Query 018103
Match_columns 360
No_of_seqs 292 out of 1270
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 8.1E-24 2.8E-28 161.8 6.8 61 164-224 1-62 (63)
2 3igm_B PF14_0633 protein; AP2 90.7 0.21 7.2E-06 39.7 3.7 28 161-190 3-31 (77)
3 1z1b_A Integrase; protein-DNA 79.6 2.2 7.5E-05 38.7 5.2 42 167-212 14-55 (356)
4 1u3e_M HNH homing endonuclease 76.1 0.43 1.5E-05 41.5 -0.6 38 166-206 109-146 (174)
5 3jtz_A Integrase; four strande 63.1 12 0.00042 29.4 5.3 44 170-213 29-76 (88)
6 3ju0_A Phage integrase; four s 37.0 47 0.0016 27.0 4.9 43 170-212 29-75 (108)
7 1b69_A Protein (integrase); in 34.4 40 0.0014 26.0 3.8 28 162-190 8-35 (69)
8 1x60_A Sporulation-specific N- 32.5 29 0.001 25.6 2.8 23 188-210 46-68 (79)
9 2ftc_I Mitochondrial ribosomal 32.5 53 0.0018 27.4 4.6 35 177-213 80-114 (118)
10 1uta_A FTSN, MSGA, cell divisi 30.6 38 0.0013 25.3 3.2 23 188-210 46-68 (81)
11 3tj6_B Protein PS 120; cytoske 28.5 14 0.00049 23.1 0.3 18 6-31 2-19 (23)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.89 E-value=8.1e-24 Score=161.78 Aligned_cols=61 Identities=67% Similarity=1.124 Sum_probs=57.1
Q ss_pred CCceeeEECCCCcEEEEEeccC-CCeEeecCCCCCHHHHHHHHHHHHHHHhCCCccCCCCCC
Q 018103 164 KLYRGVRQRHWGKWVAEIRLPK-NRTRLWLGTFDTAEEAALAYDQAAYKLRGEFARLNFPHL 224 (360)
Q Consensus 164 S~YRGVr~r~~GKW~AeIr~p~-~gkri~LGtFdTaEEAA~AYD~AA~kl~G~~A~lNFP~~ 224 (360)
.+||||++++||||+|+|++|. +|+++|||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 3699998888999999999986 589999999999999999999999999999999999964
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=90.67 E-value=0.21 Score=39.66 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=22.9
Q ss_pred CCCCCceee-EECCCCcEEEEEeccCCCeEe
Q 018103 161 KPTKLYRGV-RQRHWGKWVAEIRLPKNRTRL 190 (360)
Q Consensus 161 ~~tS~YRGV-r~r~~GKW~AeIr~p~~gkri 190 (360)
...|+|.|| +..+.+.|+|.-.. +|+|.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 457999999 78889999999887 66554
No 3
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=79.62 E-value=2.2 Score=38.72 Aligned_cols=42 Identities=19% Similarity=0.073 Sum_probs=32.3
Q ss_pred eeeEECCCCcEEEEEeccCCCeEeecCCCCCHHHHHHHHHHHHHHH
Q 018103 167 RGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKL 212 (360)
Q Consensus 167 RGVr~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~kl 212 (360)
.||++++.|+|+.++.. +|+++.+|. |..||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 46877778999877654 888999996 8888887777665555
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=76.09 E-value=0.43 Score=41.46 Aligned_cols=38 Identities=5% Similarity=-0.079 Sum_probs=30.0
Q ss_pred ceeeEECCCCcEEEEEeccCCCeEeecCCCCCHHHHHHHHH
Q 018103 166 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD 206 (360)
Q Consensus 166 YRGVr~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD 206 (360)
++||.....++|.+.|.+ + +.++||.|++.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 567733445779999987 5 6678999999999999964
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=63.05 E-value=12 Score=29.35 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=31.0
Q ss_pred EECCCC--cEEEEEeccCCCeEeecCCCC--CHHHHHHHHHHHHHHHh
Q 018103 170 RQRHWG--KWVAEIRLPKNRTRLWLGTFD--TAEEAALAYDQAAYKLR 213 (360)
Q Consensus 170 r~r~~G--KW~AeIr~p~~gkri~LGtFd--TaEEAA~AYD~AA~kl~ 213 (360)
+-.+.| .|+-+.+...+.+++-||.|. |.++|....+++...+.
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence 334444 498888873344567899998 58888888888777663
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=36.96 E-value=47 Score=27.03 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=29.5
Q ss_pred EECCCC--cEEEEEeccCCCeEeecCCCC--CHHHHHHHHHHHHHHH
Q 018103 170 RQRHWG--KWVAEIRLPKNRTRLWLGTFD--TAEEAALAYDQAAYKL 212 (360)
Q Consensus 170 r~r~~G--KW~AeIr~p~~gkri~LGtFd--TaEEAA~AYD~AA~kl 212 (360)
+-.+.| .|+-+.+...+.+++-||.|. |..+|....+++...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 334444 498888873333567799998 4888887777776666
No 7
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=34.35 E-value=40 Score=26.04 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=21.7
Q ss_pred CCCCceeeEECCCCcEEEEEeccCCCeEe
Q 018103 162 PTKLYRGVRQRHWGKWVAEIRLPKNRTRL 190 (360)
Q Consensus 162 ~tS~YRGVr~r~~GKW~AeIr~p~~gkri 190 (360)
+.-.+.|+.+|..|+|+.++.+ ..|++.
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d-~~Gkr~ 35 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYID-SFGEPQ 35 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEEC-TTSSEE
T ss_pred CCccCCCeEEccCCcEEEEEEc-CCCCEE
Confidence 3567889999999999999987 335554
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=32.52 E-value=29 Score=25.56 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=18.7
Q ss_pred eEeecCCCCCHHHHHHHHHHHHH
Q 018103 188 TRLWLGTFDTAEEAALAYDQAAY 210 (360)
Q Consensus 188 kri~LGtFdTaEEAA~AYD~AA~ 210 (360)
-||++|.|.+.++|..+.++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 56778999999999988776554
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=32.48 E-value=53 Score=27.38 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=28.7
Q ss_pred EEEEEeccCCCeEeecCCCCCHHHHHHHHHHHHHHHh
Q 018103 177 WVAEIRLPKNRTRLWLGTFDTAEEAALAYDQAAYKLR 213 (360)
Q Consensus 177 W~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~kl~ 213 (360)
|+|+|.. +..-+-++...+++.|..|..+|+.+|=
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999985 5555557777889999999999998873
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=30.57 E-value=38 Score=25.29 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=18.8
Q ss_pred eEeecCCCCCHHHHHHHHHHHHH
Q 018103 188 TRLWLGTFDTAEEAALAYDQAAY 210 (360)
Q Consensus 188 kri~LGtFdTaEEAA~AYD~AA~ 210 (360)
-||.+|-|.+.++|..+.++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57788999999999988776654
No 11
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=28.54 E-value=14 Score=23.07 Aligned_cols=18 Identities=33% Similarity=0.813 Sum_probs=14.6
Q ss_pred hhcccCCCCCCcchHHHHHhhhhccc
Q 018103 6 DMYNSSRSISDPFREELMKALEPFMK 31 (360)
Q Consensus 6 d~y~~~~~~~~~~~~elm~aLePf~k 31 (360)
|+|+- .+|.|+||.+-|+
T Consensus 2 DIynk--------aqdv~~AL~nvi~ 19 (23)
T 3tj6_B 2 DIYNK--------AREVINAVNPVIE 19 (26)
T ss_dssp HHHHH--------HHHHHHHHHHHHH
T ss_pred hHHHH--------HHHHHHHHHHHHH
Confidence 56766 7899999998876
Done!