BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018104
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 193/227 (85%), Positives = 212/227 (93%)
Query: 125 SIPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTD 184
++P SVDWRKKG+VT+VKDQGQCGSCWAFSTI AVEGIN I TNKLVSLSEQELVDCDTD
Sbjct: 1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD 60
Query: 185 QNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANH 244
QNQGCNGGLM+ AFEFIK++GG+TTEA YPY+A DGTCDVSKE++PAVSIDGHENVP N
Sbjct: 61 QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPEND 120
Query: 245 EDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWI 304
E+ALLKAVA QPVSVAIDAG SDFQFYSEGVFTG CGTEL+HGVA VGYGTT+DGTKYW
Sbjct: 121 ENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWT 180
Query: 305 VRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIKKSATNPTG 351
V+NSWGPEWGEKGYIRM+RGISDK+GLCGIAMEASYPIKKS+ NP+G
Sbjct: 181 VKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSNNPSG 227
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 319 bits (817), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 151/232 (65%), Positives = 181/232 (78%), Gaps = 4/232 (1%)
Query: 123 VTSIPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCD 182
V+ +PPSVDWR+KG+VT VKDQG+CGSCWAFST+ +VEGIN I T LVSLSEQEL+DCD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 183 TDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSK--ESSPAVS-IDGHEN 239
T N GC GGLM+ AFE+IK GG+ TEA YPY+A GTC+V++ ++SP V IDGH++
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQD 120
Query: 240 VPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDG 299
VPAN E+ L +AVA QPVSVA++A F FYSEGVFTGECGTEL+HGVA VGYG DG
Sbjct: 121 VPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDG 180
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIKK-SATNPT 350
YW V+NSWGP WGE+GYIR+++ GLCGIAMEASYP+K S PT
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKTYSKPKPT 232
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 130/219 (59%), Positives = 157/219 (71%), Gaps = 3/219 (1%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P VDWR G+V +KDQGQCGSCWAFSTIAAVEGIN I T L+SLSEQELVDC Q
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 186 N-QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANH 244
N +GC+GG M F+FI GG+ TEA YPY A +G C++ + VSID +ENVP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 245 EDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWI 304
E AL AVA QPVSVA++A +FQ YS G+FTG CGT ++H V VGYGT G YWI
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTE-GGIDYWI 179
Query: 305 VRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
V+NSWG WGE+GY+R+QR + G CGIA +ASYP+K
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 264 bits (675), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 125/219 (57%), Positives = 154/219 (70%), Gaps = 3/219 (1%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P S+DWR+ G+V VK+QG CGSCWAFST+AAVEGIN I+T L+SLSEQ+LVDC T
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDC-TTA 61
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N GC GG M AF+FI GG+ +E YPY+ DG C+ S ++P VSID +ENVP+++E
Sbjct: 62 NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICN-STVNAPVVSIDSYENVPSHNE 120
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
+L KAVA QPVSV +DA DFQ Y G+FTG C NH + VGYGT D +WIV
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTEND-KDFWIV 179
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIKK 344
+NSWG WGE GYIR +R I + G CGI ASYP+KK
Sbjct: 180 KNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK 218
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 263 bits (673), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 141/321 (43%), Positives = 196/321 (61%), Gaps = 7/321 (2%)
Query: 24 FHEKELESEEGLWDLYERWR-SHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLK 82
+ + +L S E L L+ W +H+ ++DEK RF +FK N+ ++ +TNK + Y L
Sbjct: 7 YSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLG 66
Query: 83 LNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPPSVDWRKKGSVTAVK 142
LN+FAD++N EF Y GS I + Q + F+ + ++P +VDWRKKG+VT V+
Sbjct: 67 LNEFADLSNDEFNEKYVGSLI-DATIEQSY--DEEFINEDIVNLPENVDWRKKGAVTPVR 123
Query: 143 DQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIK 202
QG CGSCWAFS +A VEGIN I T KLV LSEQELVDC+ ++ GC GG A E++
Sbjct: 124 HQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER-RSHGCKGGYPPYALEYVA 182
Query: 203 KKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQPVSVAID 262
K G+ +KYPY+A GTC + P V G V N+E LL A+AKQPVSV ++
Sbjct: 183 KN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVE 241
Query: 263 AGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQ 322
+ FQ Y G+F G CGT+++ V AVGYG + +++NSWG WGEKGYIR++
Sbjct: 242 SKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIK 300
Query: 323 RGISDKKGLCGIAMEASYPIK 343
R + G+CG+ + YP K
Sbjct: 301 RAPGNSPGVCGLYKSSYYPTK 321
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 129/219 (58%), Positives = 156/219 (71%), Gaps = 3/219 (1%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P VDWR G+V +KDQGQCGS WAFSTIAAVEGIN I T L+SLSEQELVDC Q
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 186 N-QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANH 244
N +GC+GG M F+FI GG+ TEA YPY A +G C++ + VSID +ENVP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 245 EDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWI 304
E AL AVA QPVSVA++A +FQ YS G+FTG CGT ++H V VGYGT G YWI
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTE-GGIDYWI 179
Query: 305 VRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
V+NSWG WGE+GY+R+QR + G CGIA +ASYP+K
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 253 bits (647), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 186/326 (57%), Gaps = 20/326 (6%)
Query: 24 FHEKELESEEGLWDLYERWR-SHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLK 82
+ + +L S E L L+E W H+ + +++DEK RF +FK N+ ++ +TNK + Y L
Sbjct: 51 YSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLG 110
Query: 83 LNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKV-----TSIPPSVDWRKKGS 137
LN FADM+N EF Y GS G Y +V +IP VDWR+KG+
Sbjct: 111 LNVFADMSNDEFKEKYTGS-------IAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGA 163
Query: 138 VTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELA 197
VT VK+QG CGS WAFS ++ +E I I T L SEQEL+DCD ++ GCNGG A
Sbjct: 164 VTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDR-RSYGCNGGYPWSA 222
Query: 198 FEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQPV 257
+ + + G + YPY+ C ++ A DG V +E ALL ++A QPV
Sbjct: 223 LQLVAQYG-IHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPV 281
Query: 258 SVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKG 317
SV ++A DFQ Y G+F G CG +++H VAAVGYG Y ++RNSWG WGE G
Sbjct: 282 SVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILIRNSWGTGWGENG 336
Query: 318 YIRMQRGISDKKGLCGIAMEASYPIK 343
YIR++RG + G+CG+ + YP+K
Sbjct: 337 YIRIKRGTGNSYGVCGLYTSSFYPVK 362
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 123/218 (56%), Positives = 149/218 (68%), Gaps = 4/218 (1%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P VDWR KG+V ++K+Q QCGSCWAFS +AAVE IN I T +L+SLSEQELVDCDT
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA- 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GCNGG M AF++I GG+ T+ YPY A G+C + VSI+G + V N+E
Sbjct: 60 SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLR--VVSINGFQRVTRNNE 117
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
AL AVA QPVSV ++A + FQ YS G+FTG CGT NHGV VGYGT G YWIV
Sbjct: 118 SALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQ-SGKNYWIV 176
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
RNSWG WG +GYI M+R ++ GLCGIA SYP K
Sbjct: 177 RNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK 214
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/219 (54%), Positives = 148/219 (67%), Gaps = 3/219 (1%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P VDWR G+V +K QG+CG CWAFS IA VEGIN I+T L+SLSEQEL+DC Q
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 186 N-QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANH 244
N +GCNGG + F+FI GG+ TE YPY A DG C+V ++ V+ID +ENVP N+
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 245 EDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWI 304
E AL AV QPVSVA+DA F+ YS G+FTG CGT ++H V VGYGT G YWI
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTE-GGIDYWI 179
Query: 305 VRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
V+NSW WGE+GY+R+ R + G CGIA SYP+K
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVG-GAGTCGIATMPSYPVK 217
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/218 (57%), Positives = 149/218 (68%), Gaps = 11/218 (5%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P +DWRKKG+VT VK+QG CGSCWAFST++ VE IN I T L+SLSEQELVDCD +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCD-KK 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N GC GG A+++I GG+ T+A YPY+A G C + +S VSIDG+ VP +E
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCNE 116
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
AL +AVA QP +VAIDA S+ FQ YS G+F+G CGT+LNHGV VGY YWIV
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY-----QANYWIV 171
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
RNSWG WGEKGYIRM R GLCGIA YP K
Sbjct: 172 RNSWGRYWGEKGYIRMLR--VGGCGLCGIARLPYYPTK 207
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/218 (55%), Positives = 149/218 (68%), Gaps = 11/218 (5%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P +DWRKKG+VT VK+QG+CGSCWAFST++ VE IN I T L+SLSEQ+LVDC+ +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCN-KK 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N GC GG A+++I GG+ TEA YPY+A G C +K+ V IDG++ VP +E
Sbjct: 60 NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKK---VVRIDGYKGVPHCNE 116
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
+AL KAVA QP VAIDA S FQ Y G+F+G CGT+LNHGV VGY YWIV
Sbjct: 117 NALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGY-----WKDYWIV 171
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
RNSWG WGE+GYIRM+R GLCGIA YP K
Sbjct: 172 RNSWGRYWGEQGYIRMKR--VGGCGLCGIARLPYYPTK 207
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 146/219 (66%), Gaps = 3/219 (1%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P VDWR G+V +K QG+CG WAFS IA VEGIN I + L+SLSEQEL+DC Q
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 186 N-QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANH 244
N +GC+GG + F+FI GG+ TE YPY A DG CDV+ + V+ID +ENVP N+
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 245 EDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWI 304
E AL AV QPVSVA+DA F+ Y+ G+FTG CGT ++H + VGYGT G YWI
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTE-GGVDYWI 179
Query: 305 VRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
V+NSW WGE+GY+R+ R + G CGIA SYP+K
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVG-GAGTCGIATMPSYPVK 217
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 145/217 (66%), Gaps = 3/217 (1%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P S+DWR KG+VT VK+QG CGS WAFSTIA VEGIN I+T L+ LSEQELVDCD +
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCD-KHS 60
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC GG + +++ G V T YPYQA C + + P V I G++ VP+N E
Sbjct: 61 YGCKGGYQTTSLQYVANNG-VHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXET 119
Query: 247 ALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIVR 306
+ L A+A QP+SV ++AG FQ Y GVF G CGT+L+H V AVGYGT+ DG Y I++
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTS-DGKNYIIIK 178
Query: 307 NSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
NSWGP WGEKGY+R++R + +G CG+ + YP K
Sbjct: 179 NSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/218 (55%), Positives = 145/218 (66%), Gaps = 11/218 (5%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P VDWR KG+V +K+QG+CGSCWAFST+ VE IN I T L+SLSEQ+LVDC + +
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDC-SKK 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N GC GG + A+++I GG+ TEA YPY+A G C +K+ V IDG + VP +E
Sbjct: 60 NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAKK---VVRIDGCKGVPQCNE 116
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
+AL AVA QP VAIDA S FQ Y G+FTG CGT+LNHGV VGY G YWIV
Sbjct: 117 NALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGY-----GKDYWIV 171
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
RNSWG WGE+GY RM+R GLCGIA YP K
Sbjct: 172 RNSWGRHWGEQGYTRMKR--VGGCGLCGIARLPFYPTK 207
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/314 (41%), Positives = 186/314 (59%), Gaps = 22/314 (7%)
Query: 39 YERWRSHHTVSRSLDEKHKRFNVFKQNV----MHVHQTNKMDKPYKLKLNKFADMTNHEF 94
+ +W++ H ++E+ R V+++N+ +H + + + + +N F DMT+ EF
Sbjct: 8 WTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEF 67
Query: 95 ASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPPSVDWRKKGSVTAVKDQGQCGSCWAFS 154
G + + R F P SVDWR+KG VT VK+QGQCGS WAFS
Sbjct: 68 RQVMNGLQNRK------PRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSWAFS 121
Query: 155 TIAAVEGINHIMTNKLVSLSEQELVDCDTDQ-NQGCNGGLMELAFEFIKKKGGVTTEAKY 213
A+EG T +L+SLSEQ LVDC + N+GCNGGLM+ AF++++ GG+ +E Y
Sbjct: 122 ATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESY 181
Query: 214 PYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAK-QPVSVAIDAGSSDFQFYS 272
PY+A + +C + + S A G ++P E AL+KAVA P+SVAIDAG F FY
Sbjct: 182 PYEATEESCKYNPKYSVANDA-GFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYK 239
Query: 273 EGV-FTGECGTE-LNHGVAAVGYG---TTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISD 327
EG+ F +C +E ++HGV VGYG T DG KYW+V+NSWG EWG GY++M + D
Sbjct: 240 EGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAK---D 296
Query: 328 KKGLCGIAMEASYP 341
++ CGIA ASYP
Sbjct: 297 RRNHCGIASAASYP 310
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 147/217 (67%), Gaps = 7/217 (3%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P S+DWR+KG+VT VK+Q CGSCWAFST+A +EGIN I+T +L+SLSEQEL+DC+ ++
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCE-RRS 60
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC+GG + +++ G V TE +YPY+ G C + P V I G++ VPAN E
Sbjct: 61 HGCDGGYQTTSLQYVVDNG-VHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEI 119
Query: 247 ALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIVR 306
+L++A+A QPVSV D+ FQFY G++ G CGT +H V AVGYG T Y +++
Sbjct: 120 SLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT-----YLLLK 174
Query: 307 NSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
NSWGP WGEKGYIR++R KG CG+ + +PIK
Sbjct: 175 NSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 230 bits (587), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 131/314 (41%), Positives = 185/314 (58%), Gaps = 22/314 (7%)
Query: 39 YERWRSHHTVSRSLDEKHKRFNVFKQNV----MHVHQTNKMDKPYKLKLNKFADMTNHEF 94
+ +W++ H ++E+ R V+++N+ +H + + + + +N F DMT+ EF
Sbjct: 12 WTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEF 71
Query: 95 ASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPPSVDWRKKGSVTAVKDQGQCGSCWAFS 154
G + + R F P SVDWR+KG VT VK+QGQCGS WAFS
Sbjct: 72 RQVMNGFQNRK------PRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSXWAFS 125
Query: 155 TIAAVEGINHIMTNKLVSLSEQELVDCDTDQ-NQGCNGGLMELAFEFIKKKGGVTTEAKY 213
A+EG T +L+SLSEQ LVDC Q N+GCNGGLM+ AF++++ GG+ +E Y
Sbjct: 126 ATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESY 185
Query: 214 PYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAK-QPVSVAIDAGSSDFQFYS 272
PY+A + +C + + S A G ++P E AL+KAVA P+SVAIDAG F FY
Sbjct: 186 PYEATEESCKYNPKYSVANDA-GFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYK 243
Query: 273 EGV-FTGECGTE-LNHGVAAVGYG---TTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISD 327
EG+ F +C +E ++HGV VGYG T D KYW+V+NSWG EWG GY++M + D
Sbjct: 244 EGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK---D 300
Query: 328 KKGLCGIAMEASYP 341
++ CGIA ASYP
Sbjct: 301 RRNHCGIASAASYP 314
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 223 bits (569), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 164/266 (61%), Gaps = 18/266 (6%)
Query: 83 LNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPPSVDWRKKGSVTAVK 142
+N F DMT+ EF G + + R + F P SVDWR+KG VT VK
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKGK------VFQEPLFYEAPRSVDWREKGYVTPVK 55
Query: 143 DQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ-NQGCNGGLMELAFEFI 201
+QGQCGSCWAFS A+EG T +L+SLSEQ LVDC Q N+GCNGGLM+ AF+++
Sbjct: 56 NQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV 115
Query: 202 KKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAK-QPVSVA 260
+ GG+ +E YPY+A + +C + + S A G ++P E AL+KAVA P+SVA
Sbjct: 116 QDNGGLDSEESYPYEATEESCKYNPKYSVANDA-GFVDIP-KQEKALMKAVATVGPISVA 173
Query: 261 IDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG---TTLDGTKYWIVRNSWGPEWGE 315
IDAG F FY EG+ F +C +E ++HGV VGYG T D KYW+V+NSWG EWG
Sbjct: 174 IDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM 233
Query: 316 KGYIRMQRGISDKKGLCGIAMEASYP 341
GY++M + D++ CGIA ASYP
Sbjct: 234 GGYVKMAK---DRRNHCGIASAASYP 256
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/223 (53%), Positives = 145/223 (65%), Gaps = 11/223 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWRKKG VT VK+Q QCGSCWAFS A+EG T KLVSLSEQ LVDC Q
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 186 -NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANH 244
NQGCNGG M AF+++K+ GG+ +E YPY A D C E+S A G V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDT-GFTVVAPGK 119
Query: 245 EDALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGY---GTTLD 298
E AL+KAVA P+SVA+DAG S FQFY G+ F +C ++ L+HGV VGY G D
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 299 GTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
+KYW+V+NSWGPEWG GY+++ + DK CGIA ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAK---DKNNHCGIATAASYP 219
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 185/323 (57%), Gaps = 21/323 (6%)
Query: 29 LESEEGLWDLYERWRSHH--TVSRSLDEKHKRFNVFKQNVMHVHQTNKMDK----PYKLK 82
L EE L +E W+ H + +DE +R ++++N+ ++ N Y+L
Sbjct: 1 LYPEEILDTHWELWKKTHRKQYNNKVDEISRRL-IWEKNLKYISIHNLEASLGVHTYELA 59
Query: 83 LNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVT-SIPPSVDWRKKGSVTAV 141
+N DMT+ E G K+ +R N T + P SVD+RKKG VT V
Sbjct: 60 MNHLGDMTSEEVVQKMTGLKVP----LSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPV 115
Query: 142 KDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFI 201
K+QGQCGSCWAFS++ A+EG T KL++LS Q LVDC +N GC GG M AF+++
Sbjct: 116 KNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYV 174
Query: 202 KKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQ-PVSVA 260
+K G+ +E YPY + +C + + A G+ +P +E AL +AVA+ PVSVA
Sbjct: 175 QKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVA 233
Query: 261 IDAGSSDFQFYSEGVFTGE-CGTE-LNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGY 318
IDA + FQFYS+GV+ E C ++ LNH V AVGYG G K+WI++NSWG WG KGY
Sbjct: 234 IDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-KGNKHWIIKNSWGENWGNKGY 292
Query: 319 IRMQRGISDKKGLCGIAMEASYP 341
I M R +K CGIA AS+P
Sbjct: 293 ILMAR---NKNNACGIANLASFP 312
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/223 (53%), Positives = 144/223 (64%), Gaps = 11/223 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWRKKG VT VK+Q QCGS WAFS A+EG T KLVSLSEQ LVDC Q
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 186 -NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANH 244
NQGCNGG M AF+++K+ GG+ +E YPY A D C E+S A G V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDT-GFTVVAPGK 119
Query: 245 EDALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGY---GTTLD 298
E AL+KAVA P+SVA+DAG S FQFY G+ F +C ++ L+HGV VGY G D
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 299 GTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
+KYW+V+NSWGPEWG GY+++ + DK CGIA ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAK---DKNNHCGIATAASYP 219
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 141/218 (64%), Gaps = 3/218 (1%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P +VDWRKKG+VT V+ QG CGSCWAFS +A VEGIN I T KLV LSEQELVDC+ +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE-RR 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GC GG A E++ K G+ +KYPY+A GTC + P V G V N+E
Sbjct: 60 SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
LL A+AKQPVSV +++ FQ Y G+F G CGT+++H V AVGYG + ++
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYI-LI 177
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
+NSWG WGEKGYIR++R + G+CG+ + YP K
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 140/218 (64%), Gaps = 3/218 (1%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P +VDWRKKG+VT V+ QG CGSCWAFS +A VEGIN I T KLV LSEQELVDC+ +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE-RR 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GC GG A E++ K G+ +KYPY+A GTC + P V G V N+E
Sbjct: 60 SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
LL A+AKQPVSV +++ FQ Y G+F G CGT++ H V AVGYG + ++
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYI-LI 177
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
+NSWG WGEKGYIR++R + G+CG+ + YP K
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 149/222 (67%), Gaps = 12/222 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCGSCWAFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A G ++P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDT-GFVDIP-KQE 119
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG---TTLDG 299
AL+KAVA P+SVAIDAG F FY EG+ F +C +E ++HGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
KYW+V+NSWG EWG GY++M + D++ CGIA ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 218
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 214 bits (545), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 149/222 (67%), Gaps = 12/222 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCGSCWAFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A G ++P E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDT-GFVDIP-KQE 120
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG---TTLDG 299
AL+KAVA P+SVAIDAG F FY EG+ F +C +E ++HGV VGYG T D
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 180
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
KYW+V+NSWG EWG GY++M + D++ CGIA ASYP
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 219
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 145/223 (65%), Gaps = 8/223 (3%)
Query: 124 TSIPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCD- 182
+ +P VDWR +G VT VKDQ CGSCWAFST A+EG + T KLVSLSEQEL+DC
Sbjct: 5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSR 64
Query: 183 TDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPA 242
+ NQ C+GG M AF+++ GG+ +E YPY A D C ++ V I G ++VP
Sbjct: 65 AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECR-AQSCEKVVKILGFKDVPR 123
Query: 243 NHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTK- 301
E A+ A+AK PVS+AI+A FQFY EGVF CGT+L+HGV VGYGT + K
Sbjct: 124 RSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKD 183
Query: 302 YWIVRNSWGPEWGEKG--YIRMQRGISDKKGLCGIAMEASYPI 342
+WI++NSWG WG G Y+ M +G ++G CG+ ++AS+P+
Sbjct: 184 FWIMKNSWGTGWGRDGYMYMAMHKG---EEGQCGLLLDASFPV 223
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 149/222 (67%), Gaps = 12/222 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCGSCWAFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A G ++P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDA-GFVDIP-KQE 119
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG---TTLDG 299
AL+KAVA P+SVAIDAG F FY EG+ F +C +E ++HGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
KYW+V+NSWG EWG GY++M + D++ CGIA ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 218
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 142/218 (65%), Gaps = 3/218 (1%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR KG+VT VK QG C SCWAFST+A VEGIN I T LV LSEQELVDCD Q
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDL-Q 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GCN G + +++ + G+ AKYPY A TC ++ P V +G V +N+E
Sbjct: 60 SYGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNE 118
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
+LL A+A QPVSV +++ DFQ Y G+F G CGT+++H V AVGYG + ++
Sbjct: 119 GSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYI-LI 177
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
+NSWGP WGE GYIR++R + G+CG+ + YPIK
Sbjct: 178 KNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPIK 215
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 143/225 (63%), Gaps = 9/225 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P S+DWRKKG+VT+VKDQG CG CWAF A+EGI+ I T +L+S+SEQ++VDCDT
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GG + AF ++ GG+ ++A YPY DGTCD++K A IDG+ NVP N
Sbjct: 62 XX-XGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKPI--AARIDGYTNVP-NSSS 117
Query: 247 ALLKAVAKQPVSVAIDAGSSDFQFYS-EGVFTGECGTE----LNHGVAAVGYGTTLDGTK 301
ALL AVAKQPVSV I S+ FQ Y+ G+F G ++ ++H V VGYG+
Sbjct: 118 ALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIKKSA 346
YWIV+NSWG EWG GYI ++R + G+C I SYP K ++
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKSTS 222
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 148/222 (66%), Gaps = 12/222 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCGS WAFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A G ++P E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDT-GFVDIP-KQE 120
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG---TTLDG 299
AL+KAVA P+SVAIDAG F FY EG+ F +C +E ++HGV VGYG T D
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 180
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
KYW+V+NSWG EWG GY++M + D++ CGIA ASYP
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 148/222 (66%), Gaps = 12/222 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCGS WAFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A G ++P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDT-GFVDIP-KQE 119
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG---TTLDG 299
AL+KAVA P+SVAIDAG F FY EG+ F +C +E ++HGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
KYW+V+NSWG EWG GY++M + D++ CGIA ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 218
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 148/222 (66%), Gaps = 12/222 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCGS WAFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A G ++P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDT-GFVDIP-KQE 119
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG---TTLDG 299
AL+KAVA P+SVAIDAG F FY EG+ F +C +E ++HGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
KYW+V+NSWG EWG GY++M + D++ CGIA ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 218
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 148/222 (66%), Gaps = 12/222 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCGS WAFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A G ++P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDA-GFVDIP-KQE 119
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG---TTLDG 299
AL+KAVA P+SVAIDAG F FY EG+ F +C +E ++HGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
KYW+V+NSWG EWG GY++M + D++ CGIA ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 218
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 21/315 (6%)
Query: 37 DLYERW-RSHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDK----PYKLKLNKFADMTN 91
DL+ +W R ++ D++H+R N++++NV H+ + N Y L LN+F DMT
Sbjct: 3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61
Query: 92 HEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPPSVDWRKKGSVTAVKDQGQCGSCW 151
EF + Y + + +G ++P +DWR+ G VT VKDQG CGS W
Sbjct: 62 EEFKAKYLTEMSRASDILS----HGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGW 117
Query: 152 AFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ-NQGCNGGLMELAFEFIKKKGGVTTE 210
AFST +EG +S SEQ+LVDC N GC GGLME A++++K+ G+ TE
Sbjct: 118 AFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQF-GLETE 176
Query: 211 AKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAV-AKQPVSVAIDAGSSDFQ 269
+ YPY A +G C +K+ A + G V + E L V A+ P +VA+D SDF
Sbjct: 177 SSYPYTAVEGQCRYNKQLGVA-KVTGFYTVHSGSEVELKNLVGAEGPAAVAVDV-ESDFM 234
Query: 270 FYSEGVFTGECGTEL--NHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISD 327
Y G++ + + L NH V AVGYGT GT YWIV+NSWG WGE+GYIRM R +
Sbjct: 235 MYRSGIYQSQTCSPLRVNHAVLAVGYGTQ-GGTDYWIVKNSWGLSWGERGYIRMVR---N 290
Query: 328 KKGLCGIAMEASYPI 342
+ +CGIA AS P+
Sbjct: 291 RGNMCGIASLASLPM 305
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 126/303 (41%), Positives = 169/303 (55%), Gaps = 19/303 (6%)
Query: 43 RSHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSK 102
++ V R + EK+ +F V N+ H + Y L +N DMT+ E S + +
Sbjct: 26 KNEEAVRRLIWEKNLKF-VMLHNLEHSMGMHS----YDLGMNHLGDMTSEEVMSLMSSLR 80
Query: 103 IKHHRMFQGTRGNGTFMYGKVTSIPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGI 162
+ Q R N T+ +P SVDWR+KG VT VK QG CG+ WAFS + A+E
Sbjct: 81 VPS----QWQR-NITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQ 135
Query: 163 NHIMTNKLVSLSEQELVDCDTDQ--NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDG 220
+ T KLVSLS Q LVDC T++ N+GCNGG M AF++I G+ ++A YPY+A D
Sbjct: 136 LKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 195
Query: 221 TCDVSKESSPAVSIDGHENVPANHEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTG 278
C + A + + +P ED L +AVA K PVSV +DA F Y GV +
Sbjct: 196 KCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP 254
Query: 279 ECGTELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEA 338
C +NHGV VGYG L+G +YW+V+NSWG +GE+GYIRM R +K CGIA
Sbjct: 255 SCTQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFP 310
Query: 339 SYP 341
SYP
Sbjct: 311 SYP 313
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 143/218 (65%), Gaps = 9/218 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P S+D+RKKG VT VK+QGQCGSCWAFS++ A+EG T KL++LS Q LVDC +N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 60
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC GG M AF+++++ G+ +E YPY D +C + + A G+ +P +E
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 247 ALLKAVAK-QPVSVAIDAGSSDFQFYSEGVFTGE-CGTE-LNHGVAAVGYGTTLDGTKYW 303
AL +AVA+ PVSVAIDA + FQFYS+GV+ E C ++ LNH V AVGYG G K+W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQ-KGNKHW 178
Query: 304 IVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
I++NSWG WG KGYI M R +K CGIA AS+P
Sbjct: 179 IIKNSWGESWGNKGYILMAR---NKNNACGIANLASFP 213
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 145/219 (66%), Gaps = 9/219 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCG+ +AFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A + G ++P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDV-GFVDIP-KQE 119
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGVF--TGECGTELNHGVAAVGYGTTLDGTKY 302
AL+KAVA P+SVAIDAG F FY EG++ + + LNH + VGYG + KY
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKY 179
Query: 303 WIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
W+V+NSWG EWG GY++M + D++ CGIA ASYP
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 215
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 204 bits (518), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 143/218 (65%), Gaps = 9/218 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P SVD+RKKG VT VK+QGQCGSCWAFS++ A+EG T KL++LS Q LVDC +N
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 62
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC GG M AF++++K G+ +E YPY + +C + + A G+ +P +E
Sbjct: 63 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 121
Query: 247 ALLKAVAK-QPVSVAIDAGSSDFQFYSEGVFTGE-CGTE-LNHGVAAVGYGTTLDGTKYW 303
AL +AVA+ PVSVAIDA + FQFYS+GV+ E C ++ LNH V AVGYG G K+W
Sbjct: 122 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-KGNKHW 180
Query: 304 IVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
I++NSWG WG KGYI M R +K CGIA AS+P
Sbjct: 181 IIKNSWGENWGNKGYILMAR---NKNNACGIANLASFP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 143/218 (65%), Gaps = 9/218 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P SVD+RKKG VT VK+QGQCGSCWAFS++ A+EG T KL++LS Q LVDC +N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 60
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC GG M AF++++K G+ +E YPY + +C + + A G+ +P +E
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 247 ALLKAVAK-QPVSVAIDAGSSDFQFYSEGVFTGE-CGTE-LNHGVAAVGYGTTLDGTKYW 303
AL +AVA+ PVSVAIDA + FQFYS+GV+ E C ++ LNH V AVGYG G K+W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-KGNKHW 178
Query: 304 IVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
I++NSWG WG KGYI M R +K CGIA AS+P
Sbjct: 179 IIKNSWGENWGNKGYILMAR---NKNNACGIANLASFP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 143/218 (65%), Gaps = 9/218 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P SVD+RKKG VT VK+QGQCGSCWAFS++ A+EG T KL++LS Q LVDC +N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 59
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC GG M AF++++K G+ +E YPY + +C + + A G+ +P +E
Sbjct: 60 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 118
Query: 247 ALLKAVAK-QPVSVAIDAGSSDFQFYSEGVFTGE-CGTE-LNHGVAAVGYGTTLDGTKYW 303
AL +AVA+ PVSVAIDA + FQFYS+GV+ E C ++ LNH V AVGYG G K+W
Sbjct: 119 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-KGNKHW 177
Query: 304 IVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
I++NSWG WG KGYI M R +K CGIA AS+P
Sbjct: 178 IIKNSWGENWGNKGYILMAR---NKNNACGIANLASFP 212
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 133/218 (61%), Gaps = 7/218 (3%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
IP VDWR+KG+VT VK+QG CGSCWAFS + +EGI I T L SEQEL+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCD-RR 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GCNGG A + + + G+ YPY+ C ++ A DG V +E
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
ALL ++A QPVSV ++A DFQ Y G+F G CG +++H VAAVGYG Y ++
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
+NSWG WGE GYIR++RG + G+CG+ + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 142/216 (65%), Gaps = 9/216 (4%)
Query: 129 SVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQG 188
SVD+RKKG VT VK+QGQCGSCWAFS++ A+EG T KL++LS Q LVDC +N G
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDG 60
Query: 189 CNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDAL 248
C GG M AF++++K G+ +E YPY + +C + + A G+ +P +E AL
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKAL 119
Query: 249 LKAVAK-QPVSVAIDAGSSDFQFYSEGVFTGE-CGTE-LNHGVAAVGYGTTLDGTKYWIV 305
+AVA+ PVSVAIDA + FQFYS+GV+ E C ++ LNH V AVGYG G K+WI+
Sbjct: 120 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-KGNKHWII 178
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
+NSWG WG KGYI M R +K CGIA AS+P
Sbjct: 179 KNSWGENWGNKGYILMAR---NKNNACGIANLASFP 211
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 144/218 (66%), Gaps = 9/218 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P SVD+R+KG VT VK+QGQCGSCWAFS++ A+EG T KL++LS Q LVDC +N
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 60
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC GG M AF++++K G+ +E YPY + +C + + A G+ +P +E
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 247 ALLKAVAK-QPVSVAIDAGSSDFQFYSEGVFTGE-CGTE-LNHGVAAVGYGTTLDGTKYW 303
AL +AVA+ PVSVAIDA + FQFYS+GV+ E C ++ LNH V AVGYG + G K+W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGES-KGNKHW 178
Query: 304 IVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
I++NSWG WG GYI+M R +K CGIA AS+P
Sbjct: 179 IIKNSWGENWGMGGYIKMAR---NKNNACGIANLASFP 213
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 132/218 (60%), Gaps = 7/218 (3%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
IP VDWR+KG+VT VK+QG CGSCWAFS + +EGI I T L SEQEL+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD-RR 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GCNGG A + + + G+ YPY+ C ++ A DG V ++
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
ALL ++A QPVSV + A DFQ Y G+F G CG +++H VAAVGYG Y ++
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
+NSWG WGE GYIR++RG + G+CG+ + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 137/220 (62%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+CWAFS + A+E + T KLVSLS Q LVDC T++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCRKYTELPYG 119
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GEKGYIRM R +K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEKGYIRMAR---NKGNHCGIASFPSYP 215
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 198 bits (503), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 131/217 (60%), Gaps = 7/217 (3%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P VDWR+KG+VT VK+QG CGSCWAFS + +EGI I T L SEQEL+DCD ++
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD-RRS 60
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GCNGG A + + + G+ YPY+ C ++ A DG V ++
Sbjct: 61 YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 247 ALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIVR 306
ALL ++A QPVSV + A DFQ Y G+F G CG +++H VAAVGYG Y +++
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILIK 174
Query: 307 NSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
NSWG WGE GYIR++RG + G+CG+ + YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 137/220 (62%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+CWAFS + A+E + T KLVSLS Q LVDC T++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYG 119
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 215
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 197 bits (501), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 132/218 (60%), Gaps = 7/218 (3%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
IP VDWR+KG+VT VK+QG CGS WAFS + +EGI I T L SEQEL+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR-R 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GCNGG A + + + G+ YPY+ C ++ A DG V +E
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
ALL ++A QPVSV ++A DFQ Y G+F G CG +++H VAAVGYG Y ++
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
+NSWG WGE GYIR++RG + G+CG+ + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 197 bits (501), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 136/220 (61%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+CWAFS + A+E + T KLVSLS Q LVDC T +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SAYRAATCRKYTELPYG 119
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GEKGYIRM R +K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEKGYIRMAR---NKGNHCGIASFPSYP 215
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 197 bits (501), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 143/218 (65%), Gaps = 7/218 (3%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
IP S+DWR+KG+VT V++QG CGSCW FS++AAVEGIN I+T +L+SLSEQEL+DC+ +
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCE-RR 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GC GG A +++ G+ YPY+ C S+ P V DG VP N+E
Sbjct: 60 SYGCRGGFPLYALQYVANS-GIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNE 118
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
AL++ +A QPVS+ ++A FQ Y G+F G CGT ++H VAAVGY G Y ++
Sbjct: 119 QALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGY-----GNDYILI 173
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
+NSWG WGE GYIR++RG + +G CG+ ++ +P K
Sbjct: 174 KNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK 211
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 197 bits (501), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 132/218 (60%), Gaps = 7/218 (3%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
IP VDWR+KG+VT VK+QG CGS WAFS + +EGI I T L SEQEL+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR-R 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GCNGG A + + + G+ YPY+ C ++ A DG V +E
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
ALL ++A QPVSV ++A DFQ Y G+F G CG +++H VAAVGYG Y ++
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
+NSWG WGE GYIR++RG + G+CG+ + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 137/220 (62%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+CWAFS + A+E + T KLVSLS Q LVDC T++
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYG 122
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 181
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 182 YWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 218
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 137/220 (62%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+CWAFS + A+E + T KLVSLS Q LVDC T++
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYG 120
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 179
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 216
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 137/220 (62%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+CWAFS + A+E + T KLVSLS Q LVDC T++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYG 119
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 137/220 (62%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+CWAFS + A+E + T KLVSLS Q LVDC T++
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYG 120
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 179
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 216
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 139/218 (63%), Gaps = 9/218 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P S+D+RKKG VT VK+QGQCGSCWAFS++ A+EG T L++L+ Q LVDC +N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDC-VSEN 60
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC GG M AF+++++ G+ +E YPY D +C + + A G+ +P +E
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEA 119
Query: 247 ALLKAVAK-QPVSVAIDAGSSDFQFYSEGVFTGE-CGTE-LNHGVAAVGYGTTLDGTKYW 303
AL +AVA PVSVAIDA + FQFYS GV+ E C ++ LNH V AVGYG G K+W
Sbjct: 120 ALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQA-GNKHW 178
Query: 304 IVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
I++NSWG WG GYI M R +K CGIA AS+P
Sbjct: 179 IIKNSWGESWGNAGYILMAR---NKNNACGIANLASFP 213
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 137/220 (62%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+CWAFS + A+E + T KLV+LS Q LVDC T++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYG 119
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 215
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 131/218 (60%), Gaps = 7/218 (3%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
IP VDWR+KG+VT VK+QG CGS WAFS + +EGI I T L SEQEL+DCD +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD-RR 59
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
+ GCNGG A + + + G+ YPY+ C ++ A DG V ++
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 246 DALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTKYWIV 305
ALL ++A QPVSV + A DFQ Y G+F G CG +++H VAAVGYG Y ++
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 306 RNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
+NSWG WGE GYIR++RG + G+CG+ + YP+K
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 176/317 (55%), Gaps = 29/317 (9%)
Query: 40 ERWR----SHHTVSRSLDEKHKRFNVFKQNVMHVHQTN----KMDKPYKLKLNKFADMTN 91
E+W +H S E+ +R +FK NV + + N K + Y +N+F DM+
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 92 HEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPP---SVDWRKKGSVTAVKDQGQCG 148
EF + K + + + R V+S P SVDWR +V+ VKDQGQCG
Sbjct: 85 EEFLAYVNRGKAQKPKHPENLR------MPYVSSKKPLAASVDWRSN-AVSEVKDQGQCG 137
Query: 149 SCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ-NQGCNGGLMELAFEFIKKKGGV 207
S W+FST AVEG + +L SLSEQ L+DC + N GC+GG M+ AF +I G+
Sbjct: 138 SSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDY-GI 196
Query: 208 TTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVAKQ-PVSVAIDAGSS 266
+E+ YPY+A C S ++ G+ ++P+ E++L AV + PV+VAIDA +
Sbjct: 197 MSESAYPYEAQGDYCRFDSSQS-VTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDA-TD 254
Query: 267 DFQFYSEGVFTGE-CG-TELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRG 324
+ QFYS G+F + C ++LNHGV VGYG+ +G YWI++NSWG WGE GY R R
Sbjct: 255 ELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD-NGQDYWILKNSWGSGWGESGYWRQVRN 313
Query: 325 ISDKKGLCGIAMEASYP 341
+ CGIA ASYP
Sbjct: 314 YGNN---CGIATAASYP 327
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 137/222 (61%), Gaps = 9/222 (4%)
Query: 124 TSIPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDT 183
++P SVDWR+KG VT VK QG CG+ WAFS + A+E + T KLVSLS Q LVDC T
Sbjct: 1 AALPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 60
Query: 184 DQ--NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVP 241
++ N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 61 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELP 119
Query: 242 ANHEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDG 299
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G
Sbjct: 120 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNG 178
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
+YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 179 KEYWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 217
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 136/220 (61%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+ WAFS + A+E + T KLVSLS Q LVDC T++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYG 119
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 136/220 (61%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+ WAFS + A+E + T KLVSLS Q LVDC T++
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYG 120
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 179
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 216
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 136/220 (61%), Gaps = 9/220 (4%)
Query: 126 IPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ 185
+P SVDWR+KG VT VK QG CG+ WAFS + A+E + T KLVSLS Q LVDC T++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 186 --NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
N+GCNGG M AF++I G+ ++A YPY+A D C + A + + +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSKYR-AATCSKYTELPYG 119
Query: 244 HEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV-FTGECGTELNHGVAAVGYGTTLDGTK 301
ED L +AVA K PVSV +DA F Y GV + C +NHGV VGYG L+G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
YW+V+NSWG +GE+GYIRM R +K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMAR---NKGNHCGIASFPSYP 215
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 145/232 (62%), Gaps = 16/232 (6%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P S DW KKG +T VK QGQCGS WAFS A+E + I T LVSLSEQEL+DC D++
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDC-VDES 61
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGH-------EN 239
+GC G +FE++ K GG+ +EA YPY+A DG C + E V+ID + E+
Sbjct: 62 EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCK-ANEIQDKVTIDNYGVQILSNES 120
Query: 240 VPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFT-GECGTE--LNHGVAAVGYGTT 296
+ E +L V +QP+SV+IDA DF FYS G++ G C + +NH V VGYG+
Sbjct: 121 TESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSE 178
Query: 297 LDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP-IKKSAT 347
DG YWI +NSWG +WG GYIR+QR + G+CG+ ASYP I+KS T
Sbjct: 179 -DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIEKSET 229
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 140/223 (62%), Gaps = 14/223 (6%)
Query: 127 PPSVDWRKKGS-VTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTD- 184
PPS+DWRKKG+ V+ VK+QG CGSCW FST A+E I T K++SL+EQ+LVDC +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 185 QNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANH 244
N GC GGL AFE+I+ G+ E YPY+ D C + + A D N+ N
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKD-VANITMND 120
Query: 245 EDALLKAVA-KQPVSVAIDAGSSDFQFYSEGVFTG----ECGTELNHGVAAVGYGTTLDG 299
E+A+++AVA PVS A + ++DF Y +G+++ + ++NH V AVGYG +G
Sbjct: 121 EEAMVEAVALYNPVSFAFEV-TNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE-NG 178
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPI 342
YWIV+NSWGP+WG GY ++RG K +CG+A ASYPI
Sbjct: 179 IPYWIVKNSWGPQWGMNGYFLIERG----KNMCGLAACASYPI 217
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 137/227 (60%), Gaps = 21/227 (9%)
Query: 129 SVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQG 188
+ DWR VT VKDQ CGSCWAFS+I +VE I NKL++LSEQELVDC + +N G
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC-SFKNYG 79
Query: 189 CNGGLMELAFEFIKKKGGVTTEAKYPYQAN-DGTCDVSKESSPAVSIDGHENVPANHEDA 247
CNGGL+ AFE + + GG+ + YPY ++ C++ + + I + +VP N
Sbjct: 80 CNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDR-CTEKYGIKNYLSVPDNKLKE 138
Query: 248 LLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGT-------TLDGT 300
L+ + +SVA+ S DF FY EG+F GECG +LNH V VG+G T G
Sbjct: 139 ALRFLGPISISVAV---SDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 195
Query: 301 K--YWIVRNSWGPEWGEKGYIRMQRGISDKKGL---CGIAMEASYPI 342
K Y+I++NSWG +WGE+G+I ++ +D+ GL CG+ +A P+
Sbjct: 196 KHYYYIIKNSWGQQWGERGFINIE---TDESGLMRKCGLGTDAFIPL 239
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 136/227 (59%), Gaps = 21/227 (9%)
Query: 129 SVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQG 188
+ DWR VT VKDQ CGS WAFS+I +VE I NKL++LSEQELVDC + +N G
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDC-SFKNYG 78
Query: 189 CNGGLMELAFEFIKKKGGVTTEAKYPYQAN-DGTCDVSKESSPAVSIDGHENVPANHEDA 247
CNGGL+ AFE + + GG+ + YPY ++ C++ + + I + +VP N
Sbjct: 79 CNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDR-CTEKYGIKNYLSVPDNKLKE 137
Query: 248 LLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGT-------TLDGT 300
L+ + +SVA+ S DF FY EG+F GECG +LNH V VG+G T G
Sbjct: 138 ALRFLGPISISVAV---SDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 194
Query: 301 K--YWIVRNSWGPEWGEKGYIRMQRGISDKKGL---CGIAMEASYPI 342
K Y+I++NSWG +WGE+G+I ++ +D+ GL CG+ +A P+
Sbjct: 195 KHYYYIIKNSWGQQWGERGFINIE---TDESGLMRKCGLGTDAFIPL 238
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 129/204 (63%), Gaps = 12/204 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P +VDWR+KG+VT VKDQGQCGSCWAFSTI +EG + N LVSLSEQ LV CDT +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDT-ID 60
Query: 187 QGCNGGLMELAFEFI--KKKGGVTTEAKYPYQANDG---TCDVSKESSPAVSIDGHENVP 241
GC GGLM+ AF +I G V TEA YPY + +G C ++ A D H ++P
Sbjct: 61 FGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITD-HVDLP 119
Query: 242 ANHEDALLKAVAKQ-PVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGT 300
+ EDA+ +A+ P+++A+DA S F Y+ G+ T +L+HGV VGY +
Sbjct: 120 QD-EDAIAAYLAENGPLAIAVDATS--FMDYNGGILTSCTSEQLDHGVLLVGYNDASN-P 175
Query: 301 KYWIVRNSWGPEWGEKGYIRMQRG 324
YWI++NSW WGE GYIR+++G
Sbjct: 176 PYWIIKNSWSNMWGEDGYIRIEKG 199
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 117/172 (68%), Gaps = 6/172 (3%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCGSCWAFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A G ++P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDT-GFVDIP-KQE 119
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG 294
AL+KAVA P+SVAIDAG F FY EG+ F +C +E ++HGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 121/203 (59%), Gaps = 10/203 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P +VDWR +G+VTAVKDQGQCGSCWAFS I VE + + L +LSEQ LV CD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD-KTD 60
Query: 187 QGCNGGLMELAFEFI--KKKGGVTTEAKYPYQANDGT---CDVSKESSPAVSIDGHENVP 241
GC+GGLM AFE+I + G V TE YPY + +G C S + A +I GH +P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGA-TITGHVELP 119
Query: 242 ANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTK 301
+ PV+VA+DA S + Y+ GV T +L+HGV VGY +
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSA-AVP 176
Query: 302 YWIVRNSWGPEWGEKGYIRMQRG 324
YWI++NSW +WGE+GYIR+ +G
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 120/203 (59%), Gaps = 10/203 (4%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P +VDWR +G+VTAVKDQGQCGSCWAFS I VE + + L +LSEQ LV CD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD-KTD 60
Query: 187 QGCNGGLMELAFEFI--KKKGGVTTEAKYPYQANDGT---CDVSKESSPAVSIDGHENVP 241
GC+GGLM AFE+I + G V TE YPY + +G C S + A +I GH +P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGA-TITGHVELP 119
Query: 242 ANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTK 301
+ PV+VA+DA S + Y+ GV T L+HGV VGY +
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEALDHGVLLVGYNDSA-AVP 176
Query: 302 YWIVRNSWGPEWGEKGYIRMQRG 324
YWI++NSW +WGE+GYIR+ +G
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 116/172 (67%), Gaps = 6/172 (3%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ- 185
P SVDWR+KG VT VK+QGQCGS WAFS A+EG T +L+SLSEQ LVDC Q
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 186 NQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHE 245
N+GCNGGLM+ AF++++ GG+ +E YPY+A + +C + + S A G ++P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDT-GFVDIP-KQE 119
Query: 246 DALLKAVAK-QPVSVAIDAGSSDFQFYSEGV-FTGECGTE-LNHGVAAVGYG 294
AL+KAVA P+SVAIDAG F FY EG+ F +C +E ++HGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 122/205 (59%), Gaps = 14/205 (6%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P +VDWR +G+VTAVKDQGQCGSCWAFS I VE + + L +L+EQ LV CD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD-KTD 60
Query: 187 QGCNGGLMELAFEFI--KKKGGVTTEAKYPYQANDGT---CDVSKESSPAVSIDGHENVP 241
GC+GGLM AFE+I + G V TE YPY + +G C S + A +I GH +P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGA-TITGHVELP 119
Query: 242 ANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTK 301
+ PV+VA+DA S + Y+ GV T +L+HGV VGY DG
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYN---DGAA 174
Query: 302 --YWIVRNSWGPEWGEKGYIRMQRG 324
YWI++NSW +WGE+GYIR+ +G
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 122/205 (59%), Gaps = 14/205 (6%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P +VDWR +G+VTAVKDQGQCGSCWAFS I VE + + L +L+EQ LV CD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD-KTD 60
Query: 187 QGCNGGLMELAFEFI--KKKGGVTTEAKYPYQANDGT---CDVSKESSPAVSIDGHENVP 241
GC+GGLM AFE+I + G V TE YPY + +G C S + A +I GH +P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGA-TITGHVELP 119
Query: 242 ANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGTTLDGTK 301
+ PV+VA+DA S + Y+ GV T +L+HGV VGY DG
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYN---DGAA 174
Query: 302 --YWIVRNSWGPEWGEKGYIRMQRG 324
YWI++NSW +WGE+GYIR+ +G
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 124/224 (55%), Gaps = 15/224 (6%)
Query: 129 SVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQG 188
+ DWR G VT VKDQ CGSCWAFS++ +VE I L SEQELVDC +N G
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSV-KNNG 81
Query: 189 CNGGLMELAFEFIKKKGGVTTEAKYPYQAN-DGTCDVSKESSPAVSIDGHENVPANHEDA 247
C GG + AF+ + GG+ ++ YPY +N TC++ K + +I + ++P +
Sbjct: 82 CYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNL-KRCNERYTIKSYVSIPDDKFKE 140
Query: 248 LLKAVAKQPVSVAIDAGSSDFQFYSEGVFTGECGTELNHGVAAVGYGT---------TLD 298
L+ + P+S++I A S DF FY G + GECG NH V VGYG ++
Sbjct: 141 ALRYLG--PISISI-AASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRME 197
Query: 299 GTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPI 342
Y+I++NSWG +WGE GYI ++ + K C I EA P+
Sbjct: 198 KFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 155/317 (48%), Gaps = 22/317 (6%)
Query: 40 ERWRSHHTV-SRSL---DEKHKRFNVFKQNVMHVHQTNKMDK----PYKLKLNKFADMTN 91
E+W + T +RS E+ R +F++ + + N+ + Y L +N F DMT
Sbjct: 20 EKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTP 79
Query: 92 HEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSI--PPSVDWRKKGSVTAVKDQGQCGS 149
E + G + G G S+ P S DWR +G V+ VK+QG CGS
Sbjct: 80 EEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGS 139
Query: 150 CWAFSTIAAVEGINHIMTNKLV--SLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGV 207
WAFS+ A+E I S+SEQ+LVDC GC+GG M AF ++ + GG+
Sbjct: 140 SWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDC-VPNALGCSGGWMNDAFTYVAQNGGI 198
Query: 208 TTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHEDALLKAVA-KQPVSVAIDAGSS 266
+E YPY+ DG C A + G+ + E+ L VA K PV+VA DA
Sbjct: 199 DSEGAYPYEMADGNCHYDPNQV-AARLSGYVYLSGPDENMLADMVATKGPVAVAFDA-DD 256
Query: 267 DFQFYSEGVFTGE-CGT-ELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRG 324
F YS GV+ C T + H V VGYG +G YW+V+NSWG WG GY ++ R
Sbjct: 257 PFGSYSGGVYYNPTCETNKFTHAVLIVGYGNE-NGQDYWLVKNSWGDGWGLDGYFKIARN 315
Query: 325 ISDKKGLCGIAMEASYP 341
++ CGIA AS P
Sbjct: 316 ANNH---CGIAGVASVP 329
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 122/221 (55%), Gaps = 15/221 (6%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
PP DWR KG+VT VKDQG CGSCWAFS VEG + L+SLSEQEL+DCD +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDK-MD 60
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
+ C GGL A+ IK GG+ TE Y YQ + +C S E + D E + +E
Sbjct: 61 KACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVE--LSQNEQ 118
Query: 247 ALLKAVAKQ-PVSVAIDAGSSDFQFYSEGV---FTGECGTEL-NHGVAAVGYGTTLDGTK 301
L +AK+ P+SVAI+A QFY G+ C L +H V VGYG D
Sbjct: 119 KLAAWLAKRGPISVAINA--FGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSD-VP 175
Query: 302 YWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPI 342
+W ++NSWG +WGEKGY + RG G CG+ AS +
Sbjct: 176 FWAIKNSWGTDWGEKGYYYLHRG----SGACGVNTMASSAV 212
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 122/240 (50%), Gaps = 21/240 (8%)
Query: 122 KVTSIPPSVDWRKK---GSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTN--KLVSLSEQ 176
++ S+P S DWR V+ V++Q CGSC++F+++ +E I+TN + LS Q
Sbjct: 202 QILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQ 261
Query: 177 ELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTC----DVSKESSPAV 232
E+V C + QGC+GG L + GV E +PY A D C + + S
Sbjct: 262 EVVSC-SPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEY 320
Query: 233 SIDGHENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVF--TGECGT----EL-N 285
G N L+ V P++VA + DF Y G++ TG EL N
Sbjct: 321 YYVGGFYGGCNEALMKLELVKHGPMAVAFEV-HDDFLHYHSGIYHHTGLSDPFNPFELTN 379
Query: 286 HGVAAVGYGT-TLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIKK 344
H V VGYG + G YWIV+NSWG +WGE GY R++RG +D+ + IAM A+ PI K
Sbjct: 380 HAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRG-TDECAIESIAM-AAIPIPK 437
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 125/240 (52%), Gaps = 21/240 (8%)
Query: 122 KVTSIPPSVDWRKK---GSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVS--LSEQ 176
K+ +P S DWR V+ V++Q CGSC++F+++ +E I+TN + LS Q
Sbjct: 203 KILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQ 262
Query: 177 ELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDG 236
E+V C + QGC GG L + G+ EA +PY D C + ++ S +
Sbjct: 263 EVVSC-SQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEY 321
Query: 237 HE--NVPANHEDALLKA--VAKQPVSVAIDAGSSDFQFYSEGVF--TGECGT----EL-N 285
H +AL+K V P++VA + DF Y +G++ TG EL N
Sbjct: 322 HYVGGFYGGCNEALMKLELVHHGPMAVAFEV-YDDFLHYKKGIYHHTGLRDPFNPFELTN 380
Query: 286 HGVAAVGYGT-TLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIKK 344
H V VGYGT + G YWIV+NSWG WGE GY R++RG +D+ + IA+ A+ PI K
Sbjct: 381 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRG-TDECAIESIAVAAT-PIPK 438
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 105/206 (50%), Gaps = 11/206 (5%)
Query: 124 TSIPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDT 183
++P +D R +VT ++ QG CGSCWAFS +AA E N + LSEQELVDC +
Sbjct: 9 VNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCAS 68
Query: 184 DQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPAN 243
GC+G + E+I++ GV E YPY A + C + +S I + +
Sbjct: 69 --QHGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRC--RRPNSQHYGISNYCQIYPP 123
Query: 244 HEDALLKAVAKQPVSVAIDAGSSD---FQFYS-EGVFTGECGTELN-HGVAAVGYGTTLD 298
+ +A+ + ++A+ G D FQ Y + + G + N H V VGYG+T
Sbjct: 124 DVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGST-Q 182
Query: 299 GTKYWIVRNSWGPEWGEKGYIRMQRG 324
G YWIVRNSW WG+ GY Q G
Sbjct: 183 GDDYWIVRNSWDTTWGDSGYGYFQAG 208
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P +D R+ +VT ++ QG CGSCWAFS +AA E N+ + L+EQELVDC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ-- 68
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC+G + E+I+ GV E+ Y Y A + +C + ++ I + + + +
Sbjct: 69 HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNVN 125
Query: 247 ALLKAVAKQPVSVAIDAGSSD---FQFYS-EGVFTGECGTELN-HGVAAVGYGTTLDGTK 301
+ +A+A+ ++A+ G D F+ Y + + G + N H V VGY + G
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY-SNAQGVD 184
Query: 302 YWIVRNSWGPEWGEKGY 318
YWIVRNSW WG+ GY
Sbjct: 185 YWIVRNSWDTNWGDNGY 201
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P +D R+ +VT ++ QG CGSCWAFS +AA E + + L+EQELVDC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ-- 68
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC+G + E+I+ GV E+ Y Y A + +C + ++ I + + + +
Sbjct: 69 HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNAN 125
Query: 247 ALLKAVAKQPVSVAIDAGSSD---FQFYS-EGVFTGECGTELN-HGVAAVGYGTTLDGTK 301
+ +A+A+ ++A+ G D F+ Y + + G + N H V VGY + G
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY-SNAQGVD 184
Query: 302 YWIVRNSWGPEWGEKGY 318
YWIVRNSW WG+ GY
Sbjct: 185 YWIVRNSWDTNWGDNGY 201
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P +D R+ +VT ++ QG CGS WAFS +AA E ++ + L+EQELVDC +
Sbjct: 91 PAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ-- 148
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC+G + E+I+ GV E+ Y Y A + +C + ++ I + + + +
Sbjct: 149 HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNAN 205
Query: 247 ALLKAVAKQPVSVAIDAGSSD---FQFYS-EGVFTGECGTELN-HGVAAVGYGTTLDGTK 301
+ +A+A+ ++A+ G D F+ Y + + G + N H V VGY + G
Sbjct: 206 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY-SNAQGVD 264
Query: 302 YWIVRNSWGPEWGEKGY 318
YWIVRNSW WG+ GY
Sbjct: 265 YWIVRNSWDTNWGDNGY 281
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 11/197 (5%)
Query: 127 PPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQN 186
P +D R+ +VT ++ QG CGS WAFS +AA E + + L+EQELVDC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ-- 68
Query: 187 QGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHENVPANHED 246
GC+G + E+I+ GV E+ Y Y A + +C + ++ I + + + +
Sbjct: 69 HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNAN 125
Query: 247 ALLKAVAKQPVSVAIDAGSSD---FQFYS-EGVFTGECGTELN-HGVAAVGYGTTLDGTK 301
+ +A+A+ ++A+ G D F+ Y + + G + N H V VGY + G
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY-SNAQGVD 184
Query: 302 YWIVRNSWGPEWGEKGY 318
YWIVRNSW WG+ GY
Sbjct: 185 YWIVRNSWDTNWGDNGY 201
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 113/266 (42%), Gaps = 45/266 (16%)
Query: 119 MYGKVTSIPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL- 173
M+ + +P S D W + ++ ++DQG CGSCWAF + A+ I TN VS+
Sbjct: 57 MFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVE 116
Query: 174 --SEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------T 209
+E L C + GCNGG A+ F +KG V+
Sbjct: 117 VSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVN 176
Query: 210 EAKYPYQANDGTCDVSKESSPAVSI----DGH-----ENVPANHEDALLKAVAKQPVSVA 260
++ P T SK P S D H +V + +D + + PV A
Sbjct: 177 GSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGA 236
Query: 261 IDAGSSDFQFYSEGVFTGECGTEL-NHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYI 319
SDF Y GV+ G + H + +G+G +GT YW+V NSW +WG+ G+
Sbjct: 237 FSV-YSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFF 294
Query: 320 RMQRGISDKKGLCGIAMEASYPIKKS 345
++ RG + CGI E I ++
Sbjct: 295 KILRG----QDHCGIESEVVAGIPRT 316
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL---SEQEL 178
+P S D W + ++ ++DQG CGSCWAF + A+ I TN VS+ +E L
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 179 VDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEAKYPYQ 216
C + GCNGG A+ F +KG V+ ++ P
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121
Query: 217 ANDGTCDVSKESSPAVSI----DGH-----ENVPANHEDALLKAVAKQPVSVAIDAGSSD 267
T SK P S D H +V + +D + + PV A SD
Sbjct: 122 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSD 180
Query: 268 FQFYSEGVFTGECGTEL-NHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGIS 326
F Y GV+ G + H + +G+G +GT YW+V NSW +WG+ G+ ++ RG
Sbjct: 181 FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRG-- 237
Query: 327 DKKGLCGIAMEASYPIKKS 345
+ CGI E I ++
Sbjct: 238 --QDHCGIESEVVAGIPRT 254
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL---SEQEL 178
+P S D W + ++ ++DQG CGSCWAF + A+ I TN VS+ +E L
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 179 VDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEAKYPYQ 216
C + GCNGG A+ F +KG V+ ++ P
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 122
Query: 217 ANDGTCDVSKESSPAVSI----DGH-----ENVPANHEDALLKAVAKQPVSVAIDAGSSD 267
T SK P S D H +V + +D + + PV A SD
Sbjct: 123 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSD 181
Query: 268 FQFYSEGVFTGECGTEL-NHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGIS 326
F Y GV+ G + H + +G+G +GT YW+V NSW +WG+ G+ ++ RG
Sbjct: 182 FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRG-- 238
Query: 327 DKKGLCGIAMEASYPIKKS 345
+ CGI E I ++
Sbjct: 239 --QDHCGIESEVVAGIPRT 255
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL---SEQEL 178
+P S D W + ++ ++DQG CGSCWAF + A+ I TN VS+ +E L
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 179 VDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEAKYPYQ 216
C + GCNGG A+ F +KG V+ ++ P
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 217 ANDGTCDVSKESSPAVSI----DGH-----ENVPANHEDALLKAVAKQPVSVAIDAGSSD 267
T SK P S D H +V + +D + + PV A SD
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSD 179
Query: 268 FQFYSEGVFTGECGTEL-NHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGIS 326
F Y GV+ G + H + +G+G +GT YW+V NSW +WG+ G+ ++ RG
Sbjct: 180 FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRG-- 236
Query: 327 DKKGLCGIAMEASYPIKKS 345
+ CGI E I ++
Sbjct: 237 --QDHCGIESEVVAGIPRT 253
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 41/238 (17%)
Query: 126 IPPSVDWRKK----GSVTAVKDQGQCGSCWAFSTIAAVEGINHIMT--NKLVSLSEQELV 179
IP S D RKK S+ ++DQ +CGSCWAF + A+ + I + + V LS +L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 180 DCDTDQNQGCNGGLMELAFEFIKKKGGVT---------------------TEAKYP---- 214
C GC GG++ A+++ K+G VT T+ KYP
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 215 --YQANDGTCDVSKESSPAVSIDGHENVPA----NHEDALLKAVAKQ-PVSVAIDAGSSD 267
Y+ K+ + D H + N E A+ K + K PV D
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTV-YED 181
Query: 268 FQFYSEGVFTGECGTELN-HGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRG 324
F Y G++ G L H + +G+G + YW++ NSW +WGE GY R+ RG
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVE-NKAPYWLIANSWNEDWGENGYFRIVRG 238
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 107/240 (44%), Gaps = 39/240 (16%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTN-KLVSLSEQELVD 180
+P S D W ++ + DQ CGSCWA + +A+ M + V +S +L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 181 CDTDQNQGCNGGLMELAFEFIKKKGGVTTEAK-YPY-----------------QAN---- 218
C +D GCNGG + A+ + G V+ + YP+ Q N
Sbjct: 132 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 191
Query: 219 --DGTCDVSKESSPAVSIDGHENVPANHEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV 275
D TCD + P V+ + ED ++ + + P VA D DF Y+ GV
Sbjct: 192 KCDYTCD--DPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDV-YEDFIAYNSGV 248
Query: 276 FTGECGTELN-HGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGI 334
+ G L H V VG+GT+ +G YW + NSW EWG GY ++RG S+ CGI
Sbjct: 249 YHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 303
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 109/259 (42%), Gaps = 45/259 (17%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL---SEQEL 178
+P S D W + ++ ++DQG CGS WAF + A+ I TN VS+ +E L
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 179 VDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEAKYPYQ 216
C + GCNGG A+ F +KG V+ A+ P
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCT 126
Query: 217 ANDGTCDVSKESSPAVSI----DGHE-----NVPANHEDALLKAVAKQPVSVAIDAGSSD 267
T SK P S D H +V + +D + + PV A SD
Sbjct: 127 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSD 185
Query: 268 FQFYSEGVFTGECGTELN-HGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGIS 326
F Y GV+ G + H + +G+G +GT YW+V NSW +WG+ G+ ++ RG
Sbjct: 186 FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRG-- 242
Query: 327 DKKGLCGIAMEASYPIKKS 345
+ CGI E I ++
Sbjct: 243 --QDHCGIESEVVAGIPRT 259
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 39/240 (16%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTN-KLVSLSEQELVD 180
+P S D W ++ + DQ CGSCWA + +A+ M + V +S +L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 181 CDTDQNQGCNGGLMELAFEFIKKKGGVTTEAK-YPY-------QANDG------------ 220
C +D GCNGG + A+ + G V+ + YP+ ++ +G
Sbjct: 154 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 213
Query: 221 ----TCDVSKESSPAVSIDGHENVPANHEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV 275
TCD + P V+ + ED ++ + + P VA D DF Y+ GV
Sbjct: 214 KCNYTCD--DPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDV-YEDFIAYNSGV 270
Query: 276 FTGECGTELN-HGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGI 334
+ G L H V VG+GT+ +G YW + NSW EWG GY ++RG S+ CGI
Sbjct: 271 YHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 325
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 39/240 (16%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTN-KLVSLSEQELVD 180
+P S D W ++ + DQ CGSCWA + +A+ M + V +S +L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 181 CDTDQNQGCNGGLMELAFEFIKKKGGVTTEAK-YPY-------QANDG------------ 220
C +D GCNGG + A+ + G V+ + YP+ ++ +G
Sbjct: 131 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 190
Query: 221 ----TCDVSKESSPAVSIDGHENVPANHEDALLKAVA-KQPVSVAIDAGSSDFQFYSEGV 275
TCD + P V+ + ED ++ + + P VA D DF Y+ GV
Sbjct: 191 KCNYTCD--DPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDV-YEDFIAYNSGV 247
Query: 276 FTGECGTELN-HGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGI 334
+ G L H V VG+GT+ +G YW + NSW EWG GY ++RG S+ CGI
Sbjct: 248 YHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 302
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 45/260 (17%)
Query: 125 SIPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL---SEQE 177
++P S D W ++ ++DQG CGSCWAF + A+ I TN V++ +E
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 178 LVDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEAKYPY 215
L C GCNGG A+ F +KG V+ A+ P
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 125
Query: 216 QANDGTCDVSKESSPAVSIDGHEN---------VPANHEDALLKAVAKQPVSVAIDAGSS 266
T +K S E+ V + ++ + + PV A S
Sbjct: 126 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTV-FS 184
Query: 267 DFQFYSEGVFTGECGTEL-NHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGI 325
DF Y GV+ E G + H + +G+G +G YW+V NSW +WG+ G+ ++ RG
Sbjct: 185 DFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-NGVPYWLVANSWNADWGDNGFFKILRG- 242
Query: 326 SDKKGLCGIAMEASYPIKKS 345
+ CGI E I ++
Sbjct: 243 ---ENHCGIESEIVAGIPRT 259
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 106/259 (40%), Gaps = 45/259 (17%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL---SEQEL 178
+P S D W ++ ++DQG CGSCWAF + A+ I TN V++ +E L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 179 VDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEAKYPYQ 216
C GCNGG A+ F +KG V+ A+ P
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 217 ANDGTCDVSKESSPAVSIDGHEN---------VPANHEDALLKAVAKQPVSVAIDAGSSD 267
T +K S E+ V + ++ + + PV A SD
Sbjct: 121 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTV-FSD 179
Query: 268 FQFYSEGVFTGECGTEL-NHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGIS 326
F Y GV+ E G + H + +G+G +G YW+V NSW +WG+ G+ ++ RG
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWGIE-NGVPYWLVANSWNADWGDNGFFKILRG-- 236
Query: 327 DKKGLCGIAMEASYPIKKS 345
+ CGI E I ++
Sbjct: 237 --ENHCGIESEIVAGIPRT 253
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 109 FQGTRGNGTFMYGKVT-----------SIPPSVDWRK-----KGSVTAVKDQGQ-CGSCW 151
++ RG+G G+ T +P S DWR S+T + Q CGSCW
Sbjct: 8 YRPLRGDGLAPLGRTTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCW 67
Query: 152 AF-STIAAVEGINHIMTNKLVS--LSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVT 208
A ST A + IN S LS Q ++DC N G G +L+ + G+
Sbjct: 68 AHASTSAMADRINIKRKGAWPSTLLSVQNVIDCG---NAGSCEGGNDLSVWDYAHQHGIP 124
Query: 209 TEAKYPYQAND---------GTCDVSKESSPAVSID----GHENVPANHEDALLKAVAKQ 255
E YQA D GTC+ KE + G + E + + A
Sbjct: 125 DETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANG 184
Query: 256 PVSVAIDAGSSDFQFYSEGVFTG-ECGTELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWG 314
P+S I A + Y+ G++ + T +NH V+ G+G + DGT+YWIVRNSWG WG
Sbjct: 185 PISCGIMA-TERLANYTGGIYAEYQDTTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWG 242
Query: 315 EKGYIRM 321
E+G++R+
Sbjct: 243 ERGWLRI 249
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 106/260 (40%), Gaps = 45/260 (17%)
Query: 125 SIPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL---SEQE 177
++P S D W ++ ++DQG CGS WAF + A+ I TN V++ +E
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 178 LVDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEAKYPY 215
L C GCNGG A+ F +KG V+ A+ P
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 181
Query: 216 QANDGTCDVSKESSPAVSIDGHEN---------VPANHEDALLKAVAKQPVSVAIDAGSS 266
T +K S E+ V + ++ + + PV A S
Sbjct: 182 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTV-FS 240
Query: 267 DFQFYSEGVFTGECGTELN-HGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGI 325
DF Y GV+ E G + H + +G+G +G YW+V NSW +WG+ G+ ++ RG
Sbjct: 241 DFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-NGVPYWLVANSWNADWGDNGFFKILRG- 298
Query: 326 SDKKGLCGIAMEASYPIKKS 345
+ CGI E I ++
Sbjct: 299 ---ENHCGIESEIVAGIPRT 315
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 126 IPPSVDWRK-----KGSVTAVKDQGQ-CGSCWAF-STIAAVEGINHIMTNKLVS--LSEQ 176
+P S DWR S+T + Q CGSCWA ST A + IN S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 177 ELVDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQAND---------GTCDVSKE 227
++DC N G G +L+ + G+ E YQA D GTC+ KE
Sbjct: 61 NVIDCG---NAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKE 117
Query: 228 SSPAVSID----GHENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGVFTG-ECGT 282
+ G + E + + A P+S I A + Y+ G++ + T
Sbjct: 118 CHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMA-TERLANYTGGIYAEYQDTT 176
Query: 283 ELNHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRM 321
+NH V+ G+G + DGT+YWIVRNSWG WGE+G++R+
Sbjct: 177 YINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 107/251 (42%), Gaps = 45/251 (17%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL---SEQEL 178
+P S D W ++ ++DQG CGSCWAF + A+ I +N V++ +E L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 179 VDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEAKYPYQ 216
C + GCNGG A+ F KKG V+ ++ P
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 217 ANDGTCDVSKESSPAVSIDGHEN--------VPANHEDALLKAVAKQ-PVSVAIDAGSSD 267
T SK P S E+ AN+E ++ + K PV A SD
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV-YSD 179
Query: 268 FQFYSEGVFTGECGTELN-HGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGIS 326
F Y GV+ G + H + +G+G +GT YW+V NSW +WG+ G+ ++ RG
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVE-NGTPYWLVGNSWNTDWGDNGFFKILRG-- 236
Query: 327 DKKGLCGIAME 337
+ CGI E
Sbjct: 237 --QDHCGIESE 245
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 126 IPPSVDWRKK---GSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTN--KLVSLSEQELVD 180
+P S DWR V+ V++Q CGSC++F+++ +E I+TN + LS QE+V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 181 CDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPAVSIDGHE-- 238
C + QGC GG L + G+ EA +PY D C + ++ S + H
Sbjct: 61 C-SQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVG 119
Query: 239 NVPANHEDALLK--AVAKQPVSVAIDAGSSDFQFYSEGVF 276
+AL+K V P++VA + DF Y +G++
Sbjct: 120 GFYGGCNEALMKLELVHHGPMAVAFEV-YDDFLHYKKGIY 158
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 107/251 (42%), Gaps = 45/251 (17%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSL---SEQEL 178
+P S D W ++ ++DQG CGSCWAF + A+ I +N V++ +E L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 179 VDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEAKYPYQ 216
C + GCNGG A+ F KKG V+ ++ P
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 217 ANDGTCDVSKESSPAVSIDGHEN--------VPANHEDALLKAVAKQ-PVSVAIDAGSSD 267
T SK P S E+ AN+E ++ + K PV A SD
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV-YSD 179
Query: 268 FQFYSEGVFTGECGTELN-HGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRMQRGIS 326
F Y GV+ G + H + +G+G +GT YW+V NSW +WG+ G+ ++ RG
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRG-- 236
Query: 327 DKKGLCGIAME 337
+ CGI E
Sbjct: 237 --QDHCGIESE 245
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 137 SVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQG-CNGGLME 195
S V+DQG C + W F++ +E I + + +S + +C +++ C+ G
Sbjct: 21 SNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSP 80
Query: 196 LAF-EFIKKKGGVTTEAKYPYQA------------------NDGTCDVSKESSPAVSIDG 236
+ F + I+ G + E+ YPY ++G +K ++ G
Sbjct: 81 MEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKG 140
Query: 237 HENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGV----FTGE-----CGTEL-NH 286
+ + + A K + ++ GS +E V F+G+ CG + +H
Sbjct: 141 YTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADH 200
Query: 287 GVAAVGYGTTLDG----TKYWIVRNSWGPEWGEKGYIRM 321
V VGYG ++ YWIVRNSWGP WG++GY ++
Sbjct: 201 AVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 61.6 bits (148), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 285 NHGVAAVGYGT-TLDGTKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYPIK 343
NH V VGYGT + G YWIV+NSWG WGE GY R++RG +D+ + IA+ A+ PI
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRG-TDECAIESIAVAAT-PIP 67
Query: 344 K 344
K
Sbjct: 68 K 68
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 137 SVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQG-CNGGLME 195
S V+DQG C + W F++ +E I + + +S + +C +++ C+ G
Sbjct: 20 SNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSP 79
Query: 196 LAF-EFIKKKGGVTTEAKYPYQA------------------NDGTCDVSKESSPAVSIDG 236
+ F + I+ G + E+ YPY ++G +K ++ G
Sbjct: 80 MEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKG 139
Query: 237 HENVPANHEDALLKAVAKQPVSVAIDAGSSDFQFYSEGV----FTGE-----CGTEL-NH 286
+ + + A K + ++ GS +E V F+G+ CG + +H
Sbjct: 140 YTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADH 199
Query: 287 GVAAVGYGTTLDG----TKYWIVRNSWGPEWGEKGYIRM 321
V VGYG ++ YWIVRNSWGP WG++GY ++
Sbjct: 200 AVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 38/204 (18%)
Query: 174 SEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVT----------------------TEA 211
+E L C + GCNGG A+ F +KG V+ +
Sbjct: 7 AEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS 66
Query: 212 KYPYQANDGTCDVSKESSPAVSI----DGHE-----NVPANHEDALLKAVAKQPVSVAID 262
+ P T SK P S D H +V + +D + + PV A
Sbjct: 67 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 126
Query: 263 AGSSDFQFYSEGVFTGECGTELN-HGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRM 321
SDF Y GV+ G + H + +G+G +GT YW+V NSW +WG+ G+ ++
Sbjct: 127 V-YSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKI 184
Query: 322 QRGISDKKGLCGIAMEASYPIKKS 345
RG + CGI E I ++
Sbjct: 185 LRG----QDHCGIESEVVAGIPRT 204
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAMEASYP 341
KYW+V+NSWG EWG GY++M + D++ CGIA ASYP
Sbjct: 2 NKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 40
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 242 ANHEDALLKAVAKQ-PVSVAIDAGSSDFQFYSEGVFTGECGTELN-HGVAAVGYGTTLDG 299
AN+E ++ + K PV A SDF Y GV+ G + H + +G+G +G
Sbjct: 106 ANNEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE-NG 163
Query: 300 TKYWIVRNSWGPEWGEKGYIRMQRGISDKKGLCGIAME 337
T YW+V NSW +WG+ G+ ++ RG + CGI E
Sbjct: 164 TPYWLVGNSWNTDWGDNGFFKILRG----QDHCGIESE 197
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 53 DEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSK 102
+EK +R+ +FK N++++H N+ Y LK+N F D++ EF Y G K
Sbjct: 40 EEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRKYLGFK 89
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTN 168
+P S D W + ++ ++DQG CGSCWAF + A+ I TN
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTN 47
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 126 IPPSVD----WRKKGSVTAVKDQGQCGSCWAFSTIAAV 159
+P S D W ++ ++DQG CGSCWAF + A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 89/232 (38%), Gaps = 49/232 (21%)
Query: 123 VTSIPPSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVE--------GINHIMTNKLVSLS 174
+ ++PP VD V DQG+ GSC A + AA++ I + + +
Sbjct: 54 IAALPPKVDLTPPFQVY---DQGRIGSCTANALAAAIQFERIHDKQSPEFIPSRLFIYYN 110
Query: 175 EQEL---VDCDTDQNQGCNGGLMELAFEFIKKKGGVTTEAKYPYQANDGTCDVSKESSPA 231
E+++ V+ D+ G ++ + + K G V E ++PY D D E P
Sbjct: 111 ERKIEGHVNYDS-------GAMIRDGIKVLHKLG-VCPEKEWPY--GDTPADPRTEEFPP 160
Query: 232 VSIDGHENVPANHEDAL-LKAVAKQPVSVAID------AGSSDFQF----YSEGVFTGEC 280
+ + ++DA K V+ ID A S F F Y+ V
Sbjct: 161 GAPASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSL 220
Query: 281 GTEL-----------NHGVAAVGYGTTLDGTKYWIVRNSWGPEWGEKGYIRM 321
+ H V VGY D +++ +RNSWG GE GY M
Sbjct: 221 PVRIPLPTKNDTLEGGHAVLCVGYD---DEIRHFRIRNSWGNNVGEDGYFWM 269
>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
Sulfur Cluster Biosynthesis
Length = 154
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 136 GSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLME 195
G+V VK QG CGSC + ST+ GI + K + E V+ D+ G +E
Sbjct: 34 GNVVRVKLQGACGSCPS-STMTMKMGIERRLMEK---IPEIVAVEALPDEETG-----LE 84
Query: 196 LAFEFIKKKGGVTTEAKYPYQ--ANDGTCDVSKESSPAVSI 234
L E I+K E PY DG+ D+ + P V I
Sbjct: 85 LNEENIEK----VLEEIRPYLIGTADGSLDLVEIEDPIVKI 121
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 134 KKGSVTAVKDQGQCGSCWAFSTIAAVE 160
K+ +T+VK+Q + G+CW +S+ + +E
Sbjct: 18 KENPITSVKNQNRAGTCWCYSSYSFLE 44
>pdb|3J21|EE Chain e, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 62
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 114 GNGTFMYGKVTSIPPSVDWRKKGSVTAVKDQGQCGSC 150
G+GT +GK S P + R+ G V+ +G C +C
Sbjct: 2 GSGTATFGKRNSTPTHIRCRRCGRVSYNVKKGYCAAC 38
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 303 WIVRNSWGPEWGEKGYIRM 321
W V NSWG + G KGY+ M
Sbjct: 391 WRVENSWGEDHGHKGYLCM 409
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 303 WIVRNSWGPEWGEKGYIRM 321
W V NSWG + G KGY+ M
Sbjct: 391 WRVENSWGEDHGHKGYLCM 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,447,138
Number of Sequences: 62578
Number of extensions: 483701
Number of successful extensions: 1251
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 126
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)