RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 018105
(360 letters)
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 610 bits (1574), Expect = 0.0
Identities = 307/360 (85%), Positives = 333/360 (92%), Gaps = 7/360 (1%)
Query: 1 MASATAPTTLSLVK-TAASSSLSSPRASFL-----RMPTSASRRLGFSAA-DPLLTCHVA 53
MASA APT LSL+K TAA++S ++ RAS L + ++ RRLGFSAA D + HVA
Sbjct: 1 MASAAAPTALSLLKSTAAAASTAASRASLLPVPSTGLSATSLRRLGFSAAADSRFSVHVA 60
Query: 54 SRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 113
S++ S + KG+R VVSMAKKSVG+L+ ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA
Sbjct: 61 SKVRSFRGKGSRGVVSMAKKSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 120
Query: 114 VPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 173
+PTIK+LI NGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK
Sbjct: 121 IPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 180
Query: 174 LVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
LVASLPEGGVLLLENVRFYKEEEKN+PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK
Sbjct: 181 LVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 240
Query: 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGG 293
+LKPSVAGFLLQKELDYLVGAVS+PKRPFAAIVGGSKVSSKIGVIESLLE CDILLLGGG
Sbjct: 241 FLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG 300
Query: 294 MIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
MIFTFYKAQG+SVGSSLVEEDKL+LAT+LLAKAKAKGV+LLLP+DVVIADKFAPDANSK+
Sbjct: 301 MIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKI 360
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 495 bits (1276), Expect = e-176
Identities = 246/282 (87%), Positives = 266/282 (94%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
K+SVG L ADLKGK+VFVR DLNVPLDDN NITDDTRIRAAVPTIK+L+ +GA+VIL S
Sbjct: 4 KRSVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILCS 63
Query: 132 HLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191
HLGRPKGVTPK+SL PLVPRLSELLG++VV A+DCIG EVEKLVA LPEGGVLLLENVRF
Sbjct: 64 HLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVRF 123
Query: 192 YKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYL 251
YKEEEKNDPEFAKKLASLAD+YVNDAFGTAHRAHASTEGV KYLKPSVAGFL+QKELDYL
Sbjct: 124 YKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYL 183
Query: 252 VGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLV 311
VGAV++PK+PFAAIVGGSKVS+KIGVIESLLE DILLLGGGMIFTFYKAQG SVGSSLV
Sbjct: 184 VGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLV 243
Query: 312 EEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
EEDKLDLAT+L+ KAKAKGV+LLLP+DVVIADKFAPDANSKV
Sbjct: 244 EEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKV 285
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional.
Length = 389
Score = 477 bits (1231), Expect = e-169
Identities = 178/273 (65%), Positives = 215/273 (78%), Gaps = 2/273 (0%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTP 141
DLKGK+V VR D NVP+ D ITDDTRIRAA+PTIK+L++ GAKVIL SHLGRPKG P
Sbjct: 8 DLKGKRVLVRVDFNVPVKDG-KITDDTRIRAALPTIKYLLEKGAKVILLSHLGRPKGEDP 66
Query: 142 KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPE 201
+FSLAP+ RLSELLG +V DDCIG E + +A+L +G VLLLENVRF K EEKNDPE
Sbjct: 67 EFSLAPVAKRLSELLGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVRFNKGEEKNDPE 126
Query: 202 FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRP 261
AKKLASL D++VNDAFGTAHRAHAST G+ K+LKP+ AGFL++KEL+ L A+ +P+RP
Sbjct: 127 LAKKLASLGDVFVNDAFGTAHRAHASTVGIAKFLKPAAAGFLMEKELEALGKALENPERP 186
Query: 262 FAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATT 321
F AI+GG+KVS KIGV+E+LLE D L++GGGM TF KAQG +VG SLVEED +D A
Sbjct: 187 FVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKE 246
Query: 322 LLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
LL KAK KGV + LP DVV+A +F+ DA + V
Sbjct: 247 LLEKAKEKGVKIPLPVDVVVAKEFS-DAEATVV 278
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 459 bits (1183), Expect = e-162
Identities = 183/278 (65%), Positives = 215/278 (77%), Gaps = 6/278 (2%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VT 140
DLKGK+V VR D NVPLDD ITDDTRIRAA+PTIK+L++ GAKV+L SHLGRPKG
Sbjct: 6 DLKGKRVLVRVDFNVPLDDG-KITDDTRIRAALPTIKYLLEKGAKVVLLSHLGRPKGGPK 64
Query: 141 PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE---- 196
K+SL P+ RLSELLG V DDCIGPE E +A+L G VLLLENVRFY EEE
Sbjct: 65 DKYSLKPVAKRLSELLGKPVKFVDDCIGPEAEAAIAALKPGEVLLLENVRFYAEEEGKEE 124
Query: 197 KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 256
KNDPEFAKKLASL D+YVNDAFGTAHRAHAST GV K L PS AGFL++KEL+ L A+
Sbjct: 125 KNDPEFAKKLASLGDIYVNDAFGTAHRAHASTVGVAKVLPPSAAGFLMEKELEALSKALE 184
Query: 257 SPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKL 316
+P+RPF AI+GG+KVS KI VIE+LL+ D LL+GGGM TF KAQG ++G SLVEED +
Sbjct: 185 NPERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGGGMANTFLKAQGYNIGKSLVEEDLI 244
Query: 317 DLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
+ A LL KAK KGV ++LP DVV+AD+F+ DA +KV
Sbjct: 245 ETAKELLEKAKEKGVKIVLPVDVVVADEFSADAETKVV 282
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 426 bits (1097), Expect = e-149
Identities = 179/281 (63%), Positives = 215/281 (76%), Gaps = 10/281 (3%)
Query: 81 ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVT 140
DLKGK+V VR D NVP+DD + ITDDTRIRAA+PTIK+L++ GAKV+L SHLGRPKG
Sbjct: 4 LDLKGKRVLVRVDFNVPVDDGK-ITDDTRIRAALPTIKYLLEQGAKVVLLSHLGRPKGEP 62
Query: 141 -PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKN- 198
K+SLAP+ LSELLG V A+DC+GPE E+ V +L G VLLLENVRFY EEE
Sbjct: 63 NEKYSLAPVAKALSELLGQPVTFANDCVGPEAEEAVEALKPGDVLLLENVRFYPEEEGKR 122
Query: 199 ------DPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLV 252
D EFAKKLASL D+YVNDAFGTAHRAHAS G+ L PS AGFL++KEL YL
Sbjct: 123 DDDKEADEEFAKKLASLGDVYVNDAFGTAHRAHASMVGIALLL-PSAAGFLMEKELKYLA 181
Query: 253 GAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVE 312
A+ +P+RPF AI+GG+KVS KI VIE+LL+ D L++GGGM FTF KAQG+ +G SL E
Sbjct: 182 KALENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFE 241
Query: 313 EDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
ED ++LA +LL KAKAKGV ++LP DVV+ADKF DAN+KV
Sbjct: 242 EDGIELAKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKV 282
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 422 bits (1086), Expect = e-144
Identities = 192/285 (67%), Positives = 232/285 (81%), Gaps = 5/285 (1%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
M KK++ ++ D+KGK+V VR D NVPLD+N NITDDTRIRAA+PTIK+L+ +GAKVIL
Sbjct: 1 MNKKTIRDI---DVKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAKVIL 57
Query: 130 SSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
SHLGRPKG PKFS+AP+ RLSELLG +V+ A D IG + +K VA L EG VLLLEN
Sbjct: 58 VSHLGRPKGEFDPKFSMAPVAKRLSELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLEN 117
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248
VRF+KEE KNDPEFAK+LASLAD+YVNDAFGTAHRAHAST GV +YL P+VAGFL++KE+
Sbjct: 118 VRFHKEETKNDPEFAKELASLADIYVNDAFGTAHRAHASTAGVAEYL-PAVAGFLMEKEI 176
Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308
++L A+++P+RPF AI+GG+KVS KIGVIE+LLE D LL+GGGM +TF KA+G VG
Sbjct: 177 EFLGKALANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGK 236
Query: 309 SLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
SLVEEDKLDLA LLAKA+ KGV LLLP D V+A +F DA KV
Sbjct: 237 SLVEEDKLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEHKV 281
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and
metabolism].
Length = 395
Score = 411 bits (1058), Expect = e-143
Identities = 176/288 (61%), Positives = 213/288 (73%), Gaps = 12/288 (4%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
M KK++ +L DL GK+V VR D NVP+DD ITDDTRIRAA+PTIK+L++ GAKV+L
Sbjct: 2 MMKKTILDL---DLAGKRVLVRVDFNVPVDDG-KITDDTRIRAALPTIKYLLEKGAKVVL 57
Query: 130 SSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENV 189
SHLGRPK + K SL P+ RLSELLG +V DDC+GPE + VA L +G VLLLENV
Sbjct: 58 LSHLGRPKEYSDKTSLEPVAKRLSELLGKEVKFVDDCVGPEARQAVAELKDGEVLLLENV 117
Query: 190 RFYKEEEKNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQ 245
RFY EEEKND E KKLASL D++VNDAFGTAHRAHAST G K+L PS AGFL++
Sbjct: 118 RFYSEEEKNDEEARTELVKKLASLGDVFVNDAFGTAHRAHASTVGFAKFL-PSAAGFLME 176
Query: 246 KELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGIS 305
KELD L A+ +P+RPF AI+GG+KVS KIGVIE+LL+ D L++GGGM TF KAQG
Sbjct: 177 KELDALGKALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYD 236
Query: 306 VGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
VG SLVE D +D A LL KAK K ++LP DVV+A +F+ DA + V
Sbjct: 237 VGKSLVEFDLIDGAKELLEKAKDK---IVLPVDVVVAKEFSRDAPATV 281
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
Length = 417
Score = 320 bits (822), Expect = e-107
Identities = 144/293 (49%), Positives = 192/293 (65%), Gaps = 21/293 (7%)
Query: 80 GADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG 138
LKGK+V +R D NVP+ + I D TRI+A +PTIK+L++ GAK V+L SHLGRP G
Sbjct: 12 DDQLKGKRVLIRVDFNVPIKEG-VIKDATRIKATLPTIKYLLEQGAKSVVLMSHLGRPDG 70
Query: 139 -VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE- 196
K+SL P+VP+L ELLG +V +DC+GPEVE+ A+ G V+LLEN+RF+ EEE
Sbjct: 71 RRVEKYSLKPVVPKLEELLGKKVTFLNDCVGPEVEEACANAKNGSVILLENLRFHIEEEG 130
Query: 197 ----------KNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGF 242
K D E F K L L D+YVNDAFGTAHRAH+S GV L VAGF
Sbjct: 131 KGVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFGTAHRAHSSMVGVD--LPVKVAGF 188
Query: 243 LLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTF-YKA 301
L++KELDY A+ +P+RPF AI+GG+KV+ KI +I++LL+ D +++GGGM FTF
Sbjct: 189 LMKKELDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVL 248
Query: 302 QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
+ +G SL +E+ + ++ KAK K V + LP D V ADKF +AN+KV
Sbjct: 249 DNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVV 301
>gnl|CDD|153029 pfam12595, Rhomboid_SP, Rhomboid serine protease. This domain
family is found in eukaryotes, and is approximately 210
amino acids in length. The family is found in
association with pfam01694. Rhomboid is a
seven-transmembrane spanning protein that resides in the
Golgi and acts as a serine protease to cleave Spitz.
Length = 204
Score = 33.8 bits (77), Expect = 0.074
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 1 MASATAPTTLSLVKTAASSSLSSPRASFLRMPTS---ASRRLGFSAADPLLTCHVASRLS 57
+AP T A+ S +S R+ F +P + + F AA L V R
Sbjct: 74 ADGPSAPHTPLTPGAASLCSFTSSRSGFSALPRRKRESVADMSFRAAAAL----VKGRSV 129
Query: 58 SIKTKGTRAVVSMA 71
T+ + A S
Sbjct: 130 RDATRRSFAPASFL 143
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 32.7 bits (75), Expect = 0.30
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 243 LLQKELDYLVGAVSSPKRPFAAIVGGSKV 271
L Q+ L+++VG V+SP R + A+ GG+ V
Sbjct: 9 LHQEALEHIVGGVNSPSRSYKAVGGGAPV 37
>gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain. The
UDP-glucose/GDP-mannose dehydrogenases are a small group
of enzymes which possesses the ability to catalyse the
NAD-dependent 2-fold oxidation of an alcohol to an acid
without the release of an aldehyde intermediate.
Length = 99
Score = 29.8 bits (68), Expect = 0.71
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVI 128
TDD R A+ I+ L++ GA+V+
Sbjct: 11 TDDLRESPALDIIEELLEAGAEVV 34
>gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed.
Length = 307
Score = 30.2 bits (69), Expect = 1.7
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 275 IGVIESLLETCDILLL-GGGMIFTFYKAQGISVGSSLVEE--DKLDLATTLLAK 325
I I LLE +++ GGG I Y A G G VE DK DLA LLA+
Sbjct: 165 IRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHG---VEAVIDK-DLAAALLAE 214
>gnl|CDD|226980 COG4633, COG4633, Plastocyanin domain containing protein [General
function prediction only].
Length = 272
Score = 30.0 bits (67), Expect = 1.9
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 49 TCHVASRLSSIKTKGTRAVVSM----AKKSVGELSGADL---------KGKKVFVRADLN 95
+ L S+ KG +S+ GE S DL GKK V D
Sbjct: 173 KGYEFQPLISVSNKGVETKLSVDLNGFDNPNGEYSIIDLNTRQTVTTFNGKKGIVEVDFK 232
Query: 96 VPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGR 135
+ + I D + A+ + L + + I + +LGR
Sbjct: 233 IDTSGSYGIVKDNNMIEALEVVDDLNTSDLEQIRTKYLGR 272
>gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase
family, UDP binding domain. The UDP-glucose/GDP-mannose
dehydrogenaseses are a small group of enzymes which
possesses the ability to catalyze the NAD-dependent
2-fold oxidation of an alcohol to an acid without the
release of an aldehyde intermediate.
Length = 103
Score = 28.3 bits (64), Expect = 2.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVI 128
TDD R A+ I+ L++ GA+V+
Sbjct: 11 TDDLRESPALDIIEELLEEGAEVV 34
>gnl|CDD|216021 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domain. Alignment
extended from. Highly alpha-helical. The cytosolic
endocytic adaptor proteins in fungi carry this domain at
the N-terminus; several of these have been referred to
as muniscin proteins. These N-terminal BAR, N-BAR, and
EFC/F-BAR domains are found in proteins that regulate
membrane trafficking events by inducing membrane
tubulation. The domain dimerises into a curved structure
that binds to liposomes and either senses or induces the
curvature of the membrane bilayer to cause biophysical
changes to the shape of the bilayer; it also thereby
recruits other trafficking factors, such as the GTPase
dynamin. Most EFC/F-BAR domain-family members localise
to actin-rich structures.
Length = 91
Score = 27.7 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 180 EGGVLLLENVR-FYKEEEKNDPEFAKKLASLADLY 213
+ G+ LLE + F +E + + E+AKKL LA Y
Sbjct: 19 KQGIKLLEELAKFLRERAEIEKEYAKKLRKLAKKY 53
>gnl|CDD|219777 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 29.1 bits (66), Expect = 3.1
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136
L+ ++ I++ T+ IK L + G KV++++ GRP
Sbjct: 10 LNSDKKISERTKE-----AIKKLQEKGIKVVIAT--GRP 41
>gnl|CDD|222008 pfam13252, DUF4043, Protein of unknown function (DUF4043). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 369 and
424 amino acids in length. There is a single completely
conserved residue G that may be functionally important.
Length = 342
Score = 28.8 bits (65), Expect = 4.0
Identities = 14/62 (22%), Positives = 19/62 (30%)
Query: 298 FYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLN 357
F S +++ DK L A AK + L I A V L+
Sbjct: 141 FRGGDATSDKANIDSTDKFSLKLIDKAVLYAKMMAHPLQPVPFIRPVMAGGEPYYVLLLH 200
Query: 358 SY 359
Y
Sbjct: 201 PY 202
>gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope
biogenesis, outer membrane].
Length = 414
Score = 29.1 bits (66), Expect = 4.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVI 128
TDD R A+ IK L + GA+VI
Sbjct: 324 TDDMRESPALDIIKRLQEKGAEVI 347
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 29.2 bits (65), Expect = 4.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 178 LPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYV 214
+PE + L+ + + K DPEF K+LA+L YV
Sbjct: 287 VPEALITALDELERVYTQAKADPEFHKELATLNQRYV 323
>gnl|CDD|241052 cd12608, RRM1_CoAA, RNA recognition motif 1 in vertebrate
RRM-containing coactivator activator/modulator (CoAA).
This subgroup corresponds to the RRM1 of CoAA, also
termed RNA-binding protein 14 (RBM14), or paraspeckle
protein 2 (PSP2), or synaptotagmin-interacting protein
(SYT-interacting protein), a heterogeneous nuclear
ribonucleoprotein (hnRNP)-like protein identified as a
nuclear receptor coactivator. It mediates
transcriptional coactivation and RNA splicing effects
in a promoter-preferential manner and is enhanced by
thyroid hormone receptor-binding protein (TRBP). CoAA
contains two N-terminal RNA recognition motifs (RRMs),
also termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains), and a TRBP-interacting
domain. It stimulates transcription through its
interactions with coactivators, such as TRBP and
CREB-binding protein CBP/p300, via the TRBP-interacting
domain and interaction with an RNA-containing complex,
such as DNA-dependent protein kinase-poly(ADP-ribose)
polymerase complexes, via the RRMs. .
Length = 69
Score = 26.7 bits (59), Expect = 4.5
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 41 FSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFV 90
F A +L+C V + + + +G A A +++ EL+G +L G+K+ V
Sbjct: 21 FEAYGAVLSCAVMRQFAFVHLRGEAA----ADRAIEELNGRELHGRKLVV 66
>gnl|CDD|240826 cd12380, RRM3_I_PABPs, RNA recognition motif 3 found in type I
polyadenylate-binding proteins. This subfamily
corresponds to the RRM3 of type I poly(A)-binding
proteins (PABPs), highly conserved proteins that bind
to the poly(A) tail present at the 3' ends of most
eukaryotic mRNAs. They have been implicated in the
regulation of poly(A) tail length during the
polyadenylation reaction, translation initiation, mRNA
stabilization by influencing the rate of deadenylation
and inhibition of mRNA decapping. The family represents
type I polyadenylate-binding proteins (PABPs),
including polyadenylate-binding protein 1 (PABP-1 or
PABPC1), polyadenylate-binding protein 3 (PABP-3 or
PABPC3), polyadenylate-binding protein 4 (PABP-4 or
APP-1 or iPABP), polyadenylate-binding protein 5
(PABP-5 or PABPC5), polyadenylate-binding protein
1-like (PABP-1-like or PABPC1L), polyadenylate-binding
protein 1-like 2 (PABPC1L2 or RBM32),
polyadenylate-binding protein 4-like (PABP-4-like or
PABPC4L), yeast polyadenylate-binding protein,
cytoplasmic and nuclear (PABP or ACBP-67), and similar
proteins. PABP-1 is an ubiquitously expressed
multifunctional protein that may play a role in 3' end
formation of mRNA, translation initiation, mRNA
stabilization, protection of poly(A) from nuclease
activity, mRNA deadenylation, inhibition of mRNA
decapping, and mRNP maturation. Although PABP-1 is
thought to be a cytoplasmic protein, it is also found
in the nucleus. PABP-1 may be involved in
nucleocytoplasmic trafficking and utilization of mRNP
particles. PABP-1 contains four copies of RNA
recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains), a
less well conserved linker region, and a proline-rich
C-terminal conserved domain (CTD). PABP-3 is a
testis-specific poly(A)-binding protein specifically
expressed in round spermatids. It is mainly found in
mammalian and may play an important role in the
testis-specific regulation of mRNA homeostasis. PABP-3
shows significant sequence similarity to PABP-1.
However, it binds to poly(A) with a lower affinity than
PABP-1. PABP-1 possesses an A-rich sequence in its
5'-UTR and allows binding of PABP and blockage of
translation of its own mRNA. In contrast, PABP-3 lacks
the A-rich sequence in its 5'-UTR. PABP-4 is an
inducible poly(A)-binding protein (iPABP) that is
primarily localized to the cytoplasm. It shows
significant sequence similarity to PABP-1 as well. The
RNA binding properties of PABP-1 and PABP-4 appear to
be identical. PABP-5 is encoded by PABPC5 gene within
the X-specific subinterval, and expressed in fetal
brain and in a range of adult tissues in mammalian,
such as ovary and testis. It may play an important role
in germ cell development. Moreover, unlike other PABPs,
PABP-5 contains only four RRMs, but lacks both the
linker region and the CTD. PABP-1-like and PABP-1-like
2 are the orthologs of PABP-1. PABP-4-like is the
ortholog of PABP-5. Their cellular functions remain
unclear. The family also includes the yeast PABP, a
conserved poly(A) binding protein containing poly(A)
tails that can be attached to the 3'-ends of mRNAs. The
yeast PABP and its homologs may play important roles in
the initiation of translation and in mRNA decay. Like
vertebrate PABP-1, the yeast PABP contains four RRMs, a
linker region, and a proline-rich CTD as well. The
first two RRMs are mainly responsible for specific
binding to poly(A). The proline-rich region may be
involved in protein-protein interactions. .
Length = 80
Score = 26.8 bits (60), Expect = 4.9
Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Query: 71 AKKSVGELSGADLKGKKVFV-RA 92
A+K+V EL+G ++ GKK++V RA
Sbjct: 55 AQKAVEELNGKEVNGKKLYVGRA 77
>gnl|CDD|102377 PRK06438, PRK06438, hypothetical protein; Provisional.
Length = 292
Score = 28.7 bits (64), Expect = 5.3
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 19/82 (23%)
Query: 260 RPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGIS----VGSSLVEEDK 315
RP + V G +G + LET TFY+ IS L + K
Sbjct: 68 RPISLSVNGVS----LGPLTRYLETN-----------TFYRIPEISGVKDFNRELDKFQK 112
Query: 316 LDLATTLLAKAKAKGVNLLLPS 337
+D L KG+++ LPS
Sbjct: 113 IDENPPLPLYHLKKGISIFLPS 134
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 28.4 bits (63), Expect = 5.3
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 27/121 (22%)
Query: 7 PTTLSLVKTAASSSLSSPRASFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRA 66
T VKT S+ R FL AS GF+ CH RL + +KG
Sbjct: 35 AETRVAVKTVNESASLRERIEFL---NEASVMKGFT-------CHHVVRLLGVVSKGQPT 84
Query: 67 VVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK 126
+V M + G+L K ++R+ L ++N PT++ +IQ A+
Sbjct: 85 LVVMELMAHGDL--------KSYLRS-LRPEAENNPG--------RPPPTLQEMIQMAAE 127
Query: 127 V 127
+
Sbjct: 128 I 128
>gnl|CDD|240859 cd12413, RRM1_RBM28_like, RNA recognition motif 1 in RNA-binding
protein 28 (RBM28) and similar proteins. This
subfamily corresponds to the RRM1 of RBM28 and Nop4p.
RBM28 is a specific nucleolar component of the
spliceosomal small nuclear ribonucleoproteins (snRNPs),
possibly coordinating their transition through the
nucleolus. It specifically associates with U1, U2, U4,
U5, and U6 small nuclear RNAs (snRNAs), and may play a
role in the maturation of both small nuclear and
ribosomal RNAs. RBM28 has four RNA recognition motifs
(RRMs), also termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains), and an extremely acidic
region between RRM2 and RRM3. The family also includes
nucleolar protein 4 (Nop4p or Nop77p) encoded by
YPL043W from Saccharomyces cerevisiae. It is an
essential nucleolar protein involved in processing and
maturation of 27S pre-rRNA and biogenesis of 60S
ribosomal subunits. Nop4p also contains four RRMs. .
Length = 79
Score = 26.4 bits (59), Expect = 6.0
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 41 FSAADPLLTCHVASRLSSIKTKG----TRAVVSMAKKSVGELSGADLKGKKVFV 90
FS P+ C V S K +G T A+ AK+++ E G+K+ V
Sbjct: 20 FSEVGPIKRCFVVKDKGSKKCRGFGYVTFALEEDAKRALEEKKKTKFGGRKIHV 73
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 28.3 bits (64), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 141 PKFSLA----PL--VPRLSELLGIQV-VKADDCIG 168
P+ LA PL +PRLS LG + +K DD G
Sbjct: 7 PRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTG 41
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 28.0 bits (63), Expect = 9.1
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 81 ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS-HLGRPKGV 139
A LK +V D P + I +D R + L A VI +S GRPKGV
Sbjct: 68 AVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTDPDDL----AYVIYTSGSTGRPKGV 123
>gnl|CDD|224378 COG1461, COG1461, Predicted kinase related to dihydroxyacetone
kinase [General function prediction only].
Length = 542
Score = 28.0 bits (63), Expect = 9.9
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGIS 305
D + + K F IV G V S + ++L +T + LL I T Y + +
Sbjct: 449 DTKIDGIEIKKGDFLGIVNGKIVVSGEDLEDALKKTLEKLLDEDSEIVTIYYGKDAT 505
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.362
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,755,519
Number of extensions: 1740638
Number of successful extensions: 1950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1925
Number of HSP's successfully gapped: 49
Length of query: 360
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 262
Effective length of database: 6,590,910
Effective search space: 1726818420
Effective search space used: 1726818420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)