RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018105
(360 letters)
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 521 bits (1344), Expect = 0.0
Identities = 142/288 (49%), Positives = 187/288 (64%), Gaps = 2/288 (0%)
Query: 69 SMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVI 128
S A + + DL KKVF+R D NVP DD NITDD RIR+A+PTI++ + NG VI
Sbjct: 1 SNAMSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVI 60
Query: 129 LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
L+SHLGRPK ++ K+SL P+ RL+ LL ++V A D IG + + +L G +LLLEN
Sbjct: 61 LASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLEN 120
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL--KPSVAGFLLQK 246
+RF K E KND AK+LAS+ +Y+NDAFG HRAH+S E +TK+ K AGFLLQK
Sbjct: 121 LRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQK 180
Query: 247 ELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISV 306
E+D+ + P RPF A+VGGSKVS K+ + +LL D L++GGGM FTF KA G +
Sbjct: 181 EIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDI 240
Query: 307 GSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
G+SL+EE+ L+ A +L K K GV + LP DVV A + D K
Sbjct: 241 GNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFV 288
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 515 bits (1330), Expect = 0.0
Identities = 170/286 (59%), Positives = 215/286 (75%), Gaps = 6/286 (2%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
M KK++ ++ D++GK+VF R D NVP++ ITDDTRIRAA+PTI++LI++GAKVIL
Sbjct: 1 MNKKTIRDV---DVRGKRVFCRVDFNVPMEQG-AITDDTRIRAALPTIRYLIEHGAKVIL 56
Query: 130 SSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
+SHLGRPKG V + L + RL ELL V K ++ +G EV+ V L EG VLLLEN
Sbjct: 57 ASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLEN 116
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248
VRFY EEKNDPE AK A LADLYVNDAFG AHRAHASTEG+ YL P+VAGFL++KEL
Sbjct: 117 VRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEL 175
Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308
+ L A+S+P RPF AI+GG+KV KIGVI++LLE D L++GGG+ +TF KA G VG
Sbjct: 176 EVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK 235
Query: 309 SLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
SL+EEDK++LA + + KAK KGV +P DVV+AD+FA DAN+KV
Sbjct: 236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVV 281
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 511 bits (1318), Expect = 0.0
Identities = 161/284 (56%), Positives = 206/284 (72%), Gaps = 6/284 (2%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
K ++ ++ DLKGK+V +R D NVP+ D + DDTRIRAA+PTIK+ ++ GAKVIL S
Sbjct: 2 KMTIRDV---DLKGKRVIMRVDFNVPVKDG-VVQDDTRIRAALPTIKYALEQGAKVILLS 57
Query: 132 HLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190
HLGRPKG +P+FSLAP+ RLSELLG +V +G EV+K V L EG VLLLEN R
Sbjct: 58 HLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTR 117
Query: 191 FYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDY 250
F+ E KNDPE AK ASLAD++VNDAFGTAHRAHAS G+ +++ PSVAGFL++KE+ +
Sbjct: 118 FHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI-PSVAGFLMEKEIKF 176
Query: 251 LVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSL 310
L +P++P+ ++GG+KVS KIGVI +L+E D +L+GG M+FTF KA G VGSS
Sbjct: 177 LSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSR 236
Query: 311 VEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
VEEDK+DLA L+ KAK KGV ++LP D VIA K P KV
Sbjct: 237 VEEDKIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVV 280
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 510 bits (1316), Expect = 0.0
Identities = 139/282 (49%), Positives = 183/282 (64%), Gaps = 5/282 (1%)
Query: 73 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH 132
+++ +L D KGK+V VR D NVP+ D + D+TRI ++PT++HL+ GA ++L SH
Sbjct: 2 RTLLDL---DPKGKRVLVRVDYNVPVQDG-KVQDETRILESLPTLRHLLAGGASLVLLSH 57
Query: 133 LGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFY 192
LGRPKG PK+SLAP+ L L E + +L G VLLLENVRF
Sbjct: 58 LGRPKGPDPKYSLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFE 117
Query: 193 KEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLV 252
EEKNDPE + + A L + +V DAFG+AHRAHAS GV + L P+ AGFL++KE+ L
Sbjct: 118 PGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL-PAYAGFLMEKEVRALS 176
Query: 253 GAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVE 312
+ P+RP+A ++GG+KVS KIGVIESLL D LL+GG M FTF KA G VG SLVE
Sbjct: 177 RLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVE 236
Query: 313 EDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
ED+LDLA LL +A+A GV + LP DVV A++ ++V
Sbjct: 237 EDRLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVF 278
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 493 bits (1272), Expect = e-176
Identities = 130/288 (45%), Positives = 186/288 (64%), Gaps = 12/288 (4%)
Query: 69 SMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVI 128
+M+ ++ ++ DLK KKV VR D NVP+ D +T RI AA+PTI++++ G VI
Sbjct: 3 AMSFLTLKDV---DLKDKKVLVRVDFNVPVKDG-KVTSKVRIEAAIPTIQYILDQGGAVI 58
Query: 129 LSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLL 186
L SHLGRP +FSL P+ LSE++ V A D + + G +++
Sbjct: 59 LMSHLGRPTEGEYDSQFSLEPVAKALSEIINKPVKFAKDWLDG------VDVKAGEIVMC 112
Query: 187 ENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQK 246
ENVRF E+K+ + +KK+ASL D++V DAF TAHRA AST GV KY+ + AG LL
Sbjct: 113 ENVRFNSGEKKSTDDLSKKIASLGDVFVMDAFATAHRAQASTYGVAKYIPVACAGILLTN 172
Query: 247 ELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISV 306
E+ L A+ SPK+P AAIVGGSKVS+K+ V+ +LL+ +IL++GGG+ TF KA+G V
Sbjct: 173 EIQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDV 232
Query: 307 GSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
G+SL E+D + AT +LAKAKA GVN+ +P DV +A +F+ +A + +
Sbjct: 233 GNSLYEQDLVAEATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIK 280
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Length = 415
Score = 488 bits (1260), Expect = e-174
Identities = 133/304 (43%), Positives = 182/304 (59%), Gaps = 27/304 (8%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
KKS+ E DLKGKKV +R D NVP+ + IT+D RIR+A+PT+K ++ G +L S
Sbjct: 2 KKSINEC---DLKGKKVLIRVDFNVPVKN-GKITNDYRIRSALPTLKKVLTEGGSCVLMS 57
Query: 132 HLGRPKG-----------------VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL 174
HLGRPKG K +L P+ RLSELL V A DC+ +
Sbjct: 58 HLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLN--AADV 115
Query: 175 VASLPEGGVLLLENVRFYKEE----EKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEG 230
V+ + G V+LLENVRFYKEE K+ AK LAS D+Y++DAFGTAHR A+ G
Sbjct: 116 VSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTG 175
Query: 231 VTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLL 290
+ K L AG+L++KE+ Y + +P RP AIVGG+KVS KI +++++L+ D LL+
Sbjct: 176 IPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLI 235
Query: 291 GGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDAN 350
GG M +TF KAQG S+G S EE KL+ A +LL KA+ + V ++LP D V +F +
Sbjct: 236 GGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDS 295
Query: 351 SKVC 354
+
Sbjct: 296 PLIT 299
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 488 bits (1258), Expect = e-173
Identities = 131/303 (43%), Positives = 187/303 (61%), Gaps = 23/303 (7%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGA-KVI 128
K S+ +L D+K KKV VR D NVP+++ I D RI A +PTI HL + GA K+I
Sbjct: 5 GNKLSISDLK--DIKNKKVLVRVDFNVPIENG-IIKDTNRITATLPTINHLKKEGASKII 61
Query: 129 LSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLE 187
L SH GRP G K++L P+ L LLG +V+ +DC+G EVE + + E V+LLE
Sbjct: 62 LISHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLE 121
Query: 188 NVRFYKEEE---------------KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVT 232
N+RF+ EEE ++ +F L LAD+++NDAFGTAHRAH+S GV
Sbjct: 122 NLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSMVGVK 181
Query: 233 KYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGG 292
+K +GFL++KEL+Y A+ +P+RP AI+GG+KVS KI +I++LL+ D +++GG
Sbjct: 182 LNVK--ASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGG 239
Query: 293 GMIFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANS 351
GM +TF K + +G+SL +E + ++ KAKAK V + LP D IAD F +AN+
Sbjct: 240 GMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANT 299
Query: 352 KVC 354
K
Sbjct: 300 KFV 302
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 482 bits (1243), Expect = e-171
Identities = 139/302 (46%), Positives = 197/302 (65%), Gaps = 23/302 (7%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VI 128
+K SV +L DLK K+VF+R D NVPLD IT + RI AA+PTIK+++++ + V+
Sbjct: 3 SSKLSVQDL---DLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEHHPRYVV 58
Query: 129 LSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLE 187
L+SHLG+P G K+SLAP+ L LLG V +DC+GPEVE V + G V+LLE
Sbjct: 59 LASHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLE 118
Query: 188 NVRFYKEEE--------------KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
N+R++ EEE ++ +F +L+SLAD+Y+NDAFGTAHRAH+S G
Sbjct: 119 NLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD- 177
Query: 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGG 293
L AGFLL+KEL Y A+ +P RPF AI+GG+KV+ KI +I++LL+ D +++GGG
Sbjct: 178 -LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGG 236
Query: 294 MIFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSK 352
M FTF K + +G S+ ++ ++ L+ KAKAKGV ++LP D +IAD F+ DAN+K
Sbjct: 237 MAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTK 296
Query: 353 VC 354
Sbjct: 297 TV 298
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 478 bits (1233), Expect = e-170
Identities = 128/287 (44%), Positives = 177/287 (61%), Gaps = 17/287 (5%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
M+ + +L DL GK+VF+RADLNVP+ D +T D RIRA++PTI+ ++ GAKV++
Sbjct: 1 MSVIKMTDL---DLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMV 56
Query: 130 SSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLE 187
+SHLGRP +FSL P+V L + L V D + + EG +++LE
Sbjct: 57 TSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLE 110
Query: 188 NVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKE 247
NVRF K E+K+D +KK A+L D++V DAFGTAHRA AST G+ K+ + AG LL E
Sbjct: 111 NVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAE 170
Query: 248 LDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVG 307
LD L A+ P RP AIVGGSKVS+K+ V++SL + D L++GGG+ TF AQG VG
Sbjct: 171 LDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVG 230
Query: 308 SSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
SL E D +D A LL + +PSDV +A +F+ A + +
Sbjct: 231 KSLYEADLVDEAKRLLTTCN-----IPVPSDVRVATEFSETAPATLK 272
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 471 bits (1214), Expect = e-167
Identities = 136/306 (44%), Positives = 192/306 (62%), Gaps = 26/306 (8%)
Query: 69 SMA-KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK- 126
S++ K ++ +L D+KGK+V +R D NVP+ +N IT++ RI+AAVP+IK + NGAK
Sbjct: 1 SLSNKLTLDKL---DVKGKRVVMRVDFNVPMKNN-QITNNQRIKAAVPSIKFCLDNGAKS 56
Query: 127 VILSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVL 184
V+L SHLGRP G + K+SL P+ L LLG V+ DC+GPEVEK A+ G V+
Sbjct: 57 VVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVI 116
Query: 185 LLENVRFYKEEEKND---------------PEFAKKLASLADLYVNDAFGTAHRAHASTE 229
LLEN+RF+ EEE F L+ L D+YVNDAFGTAHRAH+S
Sbjct: 117 LLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMV 176
Query: 230 GVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILL 289
GV L GFL++KEL+Y A+ SP+RPF AI+GG+KV+ KI +I ++L+ + ++
Sbjct: 177 GVN--LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMI 234
Query: 290 LGGGMIFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPD 348
+GGGM FTF K + +G+SL +E+ + L++KA+ GV + LP D V ADKF +
Sbjct: 235 IGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDEN 294
Query: 349 ANSKVC 354
A +
Sbjct: 295 AKTGQA 300
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii}
Length = 410
Score = 468 bits (1207), Expect = e-166
Identities = 94/286 (32%), Positives = 140/286 (48%), Gaps = 16/286 (5%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTP 141
+ K VF+R DLN P+ D I D R +A +PTI++LI++GAKV++ +H G+P
Sbjct: 8 NFHNKTVFLRVDLNSPMKDG-KIISDARFKAVLPTIRYLIESGAKVVIGTHQGKPYS-ED 65
Query: 142 KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDP- 200
+ LSELL V +D G + + L G V +LEN+RF EE KN P
Sbjct: 66 YTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPI 125
Query: 201 ------EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGA 254
KKL+ + D VNDAF TAHR+ S G + P + GFL++KE++ L+ A
Sbjct: 126 EECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIK-PMIMGFLMEKEIEALMRA 184
Query: 255 VSSPKRPFAAIVGGSKVSSKIGVIESLL--ETCDILLLGGGMIFTFYKAQGISVGSSLVE 312
S P ++GG+KV + V+E++L E D++L GG + F A+G +G VE
Sbjct: 185 YYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVE 244
Query: 313 EDKLDLATTLLAKAKAK----GVNLLLPSDVVIADKFAPDANSKVC 354
K + A+ + P D + K +
Sbjct: 245 FMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLS 290
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 373 bits (959), Expect = e-128
Identities = 104/228 (45%), Positives = 147/228 (64%), Gaps = 17/228 (7%)
Query: 142 KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE----- 196
K+SLAP+ L LLG V +DC+GPEVE V + G V+LLEN+R++ EEE
Sbjct: 3 KYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKV 62
Query: 197 ---------KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKE 247
++ +F +L+SLAD+Y+NDAFGTAHRAH+S G L AGFLL+KE
Sbjct: 63 DGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAAGFLLEKE 120
Query: 248 LDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-QGISV 306
L Y A+ +P RPF AI+GG+KV+ KI +I++LL+ D +++GGGM FTF K + +
Sbjct: 121 LKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEI 180
Query: 307 GSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
G S+ ++ ++ L+ KAKAKGV ++LP D +IAD F+ DAN+K
Sbjct: 181 GDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTV 228
Score = 107 bits (269), Expect = 3e-26
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
Query: 64 TRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQN 123
+ +K SV +L DLK K+VF+R D NVPLD IT + RI AA+PTIK+++++
Sbjct: 342 SEKKSLSSKLSVQDL---DLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEH 397
Query: 124 GAK-VILSSHLGRPKG 138
+ V+L+SHLGRP G
Sbjct: 398 HPRYVVLASHLGRPNG 413
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 7e-07
Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 56/190 (29%)
Query: 7 PTTL-----SLVKTAASSSLSSPRASFL-RMPTSASRRLGFSAADPLLTCHVASRLSSIK 60
P +L +L K A S L R F R ++R L ++ P H S +
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS--P---FH-----SHL- 431
Query: 61 TKGTRAVVSMAKKSVGELSGADLKGKKV-FVRADLNVPLDDNQNITDDTRIRAAVPTIKH 119
+ +L DL V F D+ +P+ D + +D +R +I
Sbjct: 432 ---------LV--PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD---LRVLSGSISE 477
Query: 120 LIQNGAKVILS-------------SHL---GRPKGVTPKFSLAPLVPRLSELLGIQVVKA 163
I I+ +H+ G P G + L L R + G++V+ A
Sbjct: 478 RI---VDCIIRLPVKWETTTQFKATHILDFG-PGGAS---GLGVLTHRNKDGTGVRVIVA 530
Query: 164 DDC-IGPEVE 172
I P+ +
Sbjct: 531 GTLDINPDDD 540
Score = 47.7 bits (113), Expect = 4e-06
Identities = 58/353 (16%), Positives = 107/353 (30%), Gaps = 122/353 (34%)
Query: 13 VKTAASSSLSSPRASFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAK 72
+ TA + + + SF A L F + C+ A +S+ S+ +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVL-FFIG---VRCYEAYPNTSLPP-------SILE 325
Query: 73 KSV--GE------LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNG 124
S+ E LS ++L ++V + N ++ ++ + L+ NG
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVN-----KTNSHLPAGKQVEIS------LV-NG 373
Query: 125 AK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGV 183
AK +++S G P+ SL L L + KA G + +
Sbjct: 374 AKNLVVS---GPPQ------SLYGLNLTLRK------AKAPS--GLDQSR---------- 406
Query: 184 LLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
+ F E K +F+ + L V F H + L P+
Sbjct: 407 -----IPF--SERK--LKFSNRF-----LPVASPF------H------SHLLVPASDLIN 440
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGS---KVSSKIG--VIESLL-ETCD----------- 286
+ + + P GS +S I +++ ++
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 287 ILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDV 339
IL G G G S L +K GV +++ +
Sbjct: 501 ILDFGPG---------GASGLGVLTHRNK-----------DGTGVRVIVAGTL 533
Score = 42.3 bits (99), Expect = 2e-04
Identities = 47/300 (15%), Positives = 80/300 (26%), Gaps = 91/300 (30%)
Query: 80 GADL-----KGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLG 134
G DL + V+ RAD H IL +
Sbjct: 1632 GMDLYKTSKAAQDVWNRAD------------------------NHFKDTYGFSILDIVIN 1667
Query: 135 RPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKE 194
P +T F R+ E + + + EK+ + E + F E
Sbjct: 1668 NPVNLTIHFG-GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE----HSTSYTFRSE 1722
Query: 195 EEK-NDPEF---AKKLASLADLYV---------NDAF-GTAH-----RAHASTEGVTKYL 235
+ + +F A L A + F G H A AS V +
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG--HSLGEYAALASLADV---M 1777
Query: 236 KPSVA-------GFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDIL 288
G +Q + S+ + +V++ E+L + +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYG---MIAINPGRVAASFSQ-EALQYVVERV 1833
Query: 289 LLGGGMIFTFYKAQGISV--------GSSLV---EEDKLDLATTLLAKAKAKGVNLL-LP 336
K G V V + LD T +L K + ++++ L
Sbjct: 1834 G----------KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Score = 36.6 bits (84), Expect = 0.014
Identities = 67/336 (19%), Positives = 101/336 (30%), Gaps = 117/336 (34%)
Query: 22 SSP--RASFLRMPTSASRRLGFSAAD-----PL-LTCHVASRLSSIKTKGTRA-VVSMAK 72
+S + + R GFS D P+ LT H K K R +M
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH----FGGEKGKRIRENYSAMIF 1693
Query: 73 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH 132
+++ + LK +K+F + K +LS+
Sbjct: 1694 ETIVD---GKLKTEKIFKEIN---------------------EHSTSYTFRSEKGLLSA- 1728
Query: 133 LGRPKGVT----PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVA--SLPEGGVLLL 186
T P A L L E + +K+ I P + A SL G
Sbjct: 1729 -------TQFTQP----A-LT--LMEKAAFEDLKSKGLI-PA-DATFAGHSL--G----- 1765
Query: 187 ENVRFYKEEEKNDPEF-AKKLASLAD-LYVNDAFGTAH-RAHASTE-------GVTKY-- 234
E+ A LASLAD + + R G + Y
Sbjct: 1766 --------------EYAA--LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 235 --LKPS-VAGFLLQKELDYLVGAVSSPKRPFAAIV-----GGSKVSSKIGVIESLLETCD 286
+ P VA Q+ L Y+V V IV V++ G + +L +
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--GDLRALDTVTN 1867
Query: 287 ILLLGGGMIFTFYKAQGISV----GSSLVEEDKLDL 318
+L F K Q I + S +EE + L
Sbjct: 1868 VL--------NFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 30.0 bits (67), Expect = 1.6
Identities = 52/289 (17%), Positives = 86/289 (29%), Gaps = 113/289 (39%)
Query: 129 LSSHLGRPKGVTPKFSLAP-------LVPRLSELLGIQVVKADDCIG--PEVEKLVA--- 176
+ ++ RP +L+ LVP S + Q+ + PE + A
Sbjct: 1 MDAYSTRP------LTLSHGSLEHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADD 52
Query: 177 ---SLPEGGVLLLENVRF-----YKEEEKNDPEFAKKL-ASLAD-----LYVND--AFGT 220
+ E L+ +F E +F + L L + L ND A
Sbjct: 53 EPTTPAE---LVG---KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-A 105
Query: 221 AHRAHASTEGVTK-------YLKPSVAGFLLQKELDY-----LVGAVSSPKRPFAAIVGG 268
A + + K Y+ A + ++ D L AV AI GG
Sbjct: 106 AKLLQENDTTLVKTKELIKNYIT---ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 269 SKVSSKIGVIES----LLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLA 324
G + L + ++ Y LV D + + L+
Sbjct: 163 Q------GNTDDYFEELRD-----------LYQTYH--------VLV-GDLIKFSAETLS 196
Query: 325 ----------KAKAKGVNLL--L--PSDVVIADKFAPDANSKVCFLNSY 359
K +G+N+L L PS+ PD + +L S
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSN-------TPDKD----YLLSI 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 7e-05
Identities = 57/381 (14%), Positives = 100/381 (26%), Gaps = 131/381 (34%)
Query: 21 LSSPRASFLRMPTSASRRLGFSAADPLLTC-------HVASR----------LSSIKTKG 63
L SP + R P S R+ D L +V SR L ++
Sbjct: 94 LMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAK 151
Query: 64 TRAVVSMAK--KSVGELSGADLKGKKVFVRADLNVP-LDDNQNITDDTRIRAAVPTIKHL 120
+ + K+ ++ KV + D + L+ + +T + +
Sbjct: 152 NVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--------M 201
Query: 121 IQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLP 179
+Q I + R K + + L LL + + L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-------------KSKPYENCL- 247
Query: 180 EGGVLLLENVRFYKEEEKNDPE----FA---KKLASLADLYVNDAFGTAHRAHASTEGVT 232
L+L NV+ + + F K L + V D A H S + +
Sbjct: 248 ----LVLLNVQ--------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 233 KYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESL-LETCDILLLG 291
L P K L + + L E
Sbjct: 296 MTLTPDEV-----KSL-------------LLKYLDCR--------PQDLPREVLTTNPRR 329
Query: 292 GGMI----------FTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDV-- 339
+I + +K V DKL +N+L P++
Sbjct: 330 LSIIAESIRDGLATWDNWK---------HVNCDKLT-------TIIESSLNVLEPAEYRK 373
Query: 340 -----VIADKFAPDAN--SKV 353
+ F P A+ + +
Sbjct: 374 MFDRLSV---FPPSAHIPTIL 391
Score = 40.6 bits (94), Expect = 7e-04
Identities = 36/259 (13%), Positives = 74/259 (28%), Gaps = 89/259 (34%)
Query: 26 ASFLRMPTSASRRLGFSAADPLLTCHVA-------SRLSSIKTKGTRAVVSMAKKSVGEL 78
+L R +P +A + + K + ++ + S+ L
Sbjct: 308 LKYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 79 SGADLKGK----KVFVRADLNVPL------------DDNQNITDDTRIRAAV------PT 116
A+ + VF ++P D + + + V T
Sbjct: 367 EPAEYRKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 117 IK-HLIQ--------NGA---KVILS-----------------------SHLG---RPKG 138
I I N + I+ SH+G +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 139 VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL----VASLPEGGVL-LLENVRFYK 193
+ +L +V L + ++ K+ A G +L L+ ++FYK
Sbjct: 486 HPERMTLFRMV-----FLDFRFLEQ---------KIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 194 EE-EKNDPEFAKKLASLAD 211
NDP++ + + ++ D
Sbjct: 532 PYICDNDPKYERLVNAILD 550
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 34.1 bits (79), Expect = 0.054
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
+ + I+ R T+ + + G +++L+S GRP G+ P
Sbjct: 17 TNSKKEISSRNRE-----TLIRIQEQGIRLVLAS--GRPTYGIVP 54
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 33.3 bits (77), Expect = 0.083
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L + +T + T+K L G + ++ GR V
Sbjct: 33 LSPDHFLTPYAKE-----TLKLLTARGINFVFAT--GRHYIDVGQ 70
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase;
HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1
PDB: 1j0b_A*
Length = 325
Score = 33.1 bits (75), Expect = 0.13
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 141 PKFSLAPL------VPRLSELLGIQV-VKADDCIGPEV 171
P+ L P +P +S +G V +K DD G +
Sbjct: 13 PRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGI 50
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or
tryptophan synthase BET like family, PLP dependent
enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium}
PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A*
4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Length = 342
Score = 33.1 bits (75), Expect = 0.13
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 141 PKFSLA----PL--VPRLSELLGIQV-VKADDCIGPEV 171
P+ PL +PRLS+ LG ++ +K DD +
Sbjct: 24 PRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAM 61
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 32.9 bits (76), Expect = 0.13
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L++ + T ++ G KV+L + GRP GV P
Sbjct: 17 LNEKNELAQATID-----AVQAAKAQGIKVVLCT--GRPLTGVQP 54
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 32.9 bits (76), Expect = 0.14
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L + I+ + I G V+L++ GRP GV
Sbjct: 17 LLPDHTISPAVKN-----AIAAARARGVNVVLTT--GRPYAGVHN 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.15
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 196 EKNDPEFAKKLASLADLYVNDAFGTAHRAHASTE 229
EK KKL + LY +D+ A A+ E
Sbjct: 18 EKQA---LKKLQASLKLYADDS-APALAIKATME 47
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 32.6 bits (75), Expect = 0.16
Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L+ ++ + ++ ++G +V++S+ GR V
Sbjct: 16 LNSKHQVSLENEN-----ALRQAQRDGIEVVVST--GRAHFDVMS 53
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 32.6 bits (75), Expect = 0.16
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L N I T+ I+++ + G V L + R +
Sbjct: 18 LRSNGKIHQATKD-----AIEYVKKKGIYVTLVT--NRHFRSAQK 55
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 32.1 bits (74), Expect = 0.22
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136
N+ I + I+ G ++L + G
Sbjct: 15 TYPNRMIHEKALE-----AIRRAESLGIPIMLVT--GNT 46
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 31.7 bits (73), Expect = 0.25
Identities = 27/154 (17%), Positives = 43/154 (27%), Gaps = 34/154 (22%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLG 157
D ++ I+ +I+ + G V L S G P+V L LG
Sbjct: 17 TDRDRLISTKAIE-----SIRSAEKKGLTVSLLS--GNVI---------PVVYALKIFLG 60
Query: 158 I----------QVVKADDCI-----GPEVEKLVASLPEGGVL---LLENVRFYKEEEKND 199
I + D I K + + + + L R D
Sbjct: 61 INGPVFGENGGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDID 120
Query: 200 PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
PE + A+ F + + H G K
Sbjct: 121 PEDVDYVRKEAESRGFVIFYSGYSWHLMNRGEDK 154
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich,
structural genomics, structural genomics consortium,
SGC, protein transport; 2.20A {Cryptosporidium parvum}
SCOP: d.159.1.7
Length = 215
Score = 31.8 bits (72), Expect = 0.25
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 21/135 (15%)
Query: 117 IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK--ADDCIGPEVEKL 174
+ L + +L G V + + L + +V D I +
Sbjct: 48 RELLATDKINYVL--CTG---NVCSQEYVEMLKNITKN---VYIVSGDLDSAIFNPDPES 99
Query: 175 VASLPEGGVLLLENVRFY-----KEEEKNDPEFAKKLASL--ADLYVNDAFGTAHRAHAS 227
PE V+ + + + +DP ++ D+ V G H+
Sbjct: 100 NGVFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILV---TGHTHKLRVF 156
Query: 228 TEGVTKYLKP-SVAG 241
+ +L P + G
Sbjct: 157 EKNGKLFLNPGTATG 171
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 31.8 bits (73), Expect = 0.31
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK-GVTP 141
D+ I + + I+ +N V++ + GR +
Sbjct: 17 RDEVYGIPESAKH-----AIRLCQKNHCSVVICT--GRSMGTIQD 54
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 31.2 bits (70), Expect = 0.42
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136
LD + P + L + VIL S +
Sbjct: 21 LDSHSYDWQPAA-----PWLTRLREANVPVILCS--SKT 52
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 31.4 bits (72), Expect = 0.45
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 17/63 (26%)
Query: 70 MAKKSVGELSGADLKGKKVFV-----RADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNG 124
A + + L + KK+ + + D T DTR +++ K+L+ G
Sbjct: 315 FASRIIDSLFN-TVTDKKIAILGFAFKKD-----------TGDTRESSSIYISKYLMDEG 362
Query: 125 AKV 127
A +
Sbjct: 363 AHL 365
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 31.4 bits (72), Expect = 0.46
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 70 MAKKSVGELSGADLKGKKVFV-----RADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNG 124
A K + EL + KK+ + + + T DTR +A+ IKHL++
Sbjct: 321 FADKIIAELFN-TVTDKKIAIFGFAFKKN-----------TGDTRESSAIHVIKHLMEEH 368
Query: 125 AKV 127
AK+
Sbjct: 369 AKL 371
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 30.7 bits (69), Expect = 0.57
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 104 ITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK 137
+ + + A ++ L G V+ + + +
Sbjct: 12 LDERGELGPAREALERLRALGVPVVPVT--AKTR 43
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 30.2 bits (69), Expect = 0.96
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
LD+ + + T ++ L Q+G V +++ GR
Sbjct: 15 LDEQKQLPLSTIE-----AVRRLKQSGVYVAIAT--GRAPFMFEH 52
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 29.8 bits (68), Expect = 1.1
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 100 DNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGI 158
+ I T ++ G K+ +++ GRPK ++ LSEL
Sbjct: 17 ETHRIPSSTIE-----ALEAAHAKGLKIFIAT--GRPK---------AIINNLSELQDR 59
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus,
phosphorylation, ribonucleoprotein, ribosome biogenesis,
RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Length = 111
Score = 28.6 bits (64), Expect = 1.2
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 60 KTKGTRAVVSM-----AKKSVGELSGADLKGKKVFVRADLNVP 97
+ + +++ L+ + +G + V D N P
Sbjct: 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106
>3lxr_F IPGB2; RHOA, GTPase, GEF, GEF-GTPase-complex, WXXXE, TTSS EF
protein, bacterial GEF, cytoskeleton dynamics; HET: GDP;
1.68A {Shigella flexneri} PDB: 3lwn_F* 3lw8_E* 3lyq_A*
Length = 192
Score = 28.9 bits (64), Expect = 1.9
Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 32/127 (25%)
Query: 29 LRMPTSASRRLGFSAA---------DPLLTCHVASRLSSIKTKGTRAVV--SMAKKSVGE 77
+ M ++ G S + D ++ C + R+ I + + S++++
Sbjct: 3 MDMLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKINTSILSSVSEQIGEN 62
Query: 78 LSGADLKGKKVFVRADLNVPLDD-----NQNITDDTR----------------IRAAVPT 116
++ KKV+V +N +D ++ I D+ R I AA +
Sbjct: 63 ITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFKQVEKDYRISLDINAAQSS 122
Query: 117 IKHLIQN 123
I HL+
Sbjct: 123 INHLVSG 129
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 29.2 bits (66), Expect = 2.1
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTPKF 143
L+ + + R + +K L + + +++S P + + F
Sbjct: 49 LNSKGSYDHN-RFQRI---LKQLQERDIRFVVAS--SNPYRQLREHF 89
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 29.1 bits (66), Expect = 2.1
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 99 DDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
D + + + IK I+ G V + + GR G+
Sbjct: 41 DKDIKVPSENID-----AIKEAIEKGYMVSICT--GRSKVGILS 77
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 29.0 bits (64), Expect = 2.2
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 106 DDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136
A P I+ L G ++I +S +
Sbjct: 15 PGYEPDPAKPIIEELKDMGFEIIFNS--SKT 43
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET:
DNA; 2.00A {Bacillus subtilis}
Length = 135
Score = 27.9 bits (62), Expect = 3.0
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL 174
++ IQ G I K+SL PL +L E + + + + +KL
Sbjct: 71 RLRMFIQKGFLFIEECEDQNGI-KFEKYSLQPLWGKLYEYIQLAQNQTQERKAEGEQKL 128
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication,
primosome; 2.3A {Geobacillus kaustophilus HTA426}
Length = 128
Score = 27.6 bits (61), Expect = 3.2
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADD 165
++ L+Q G + + H K++L PL +L L Q + +
Sbjct: 71 MVRRLLQKGM-IAIEEHTDEQGIRNEKYTLEPLWEKLVHHLYTQAAQQGE 119
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2dh9_A
Length = 92
Score = 26.8 bits (60), Expect = 3.7
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 71 AKKSVGELSGADLKGKKVFVRAD 93
A+++ ++G L G+++ VR D
Sbjct: 61 AERACRMMNGMKLSGREIDVRID 83
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 1.90A {Acinetobacter baumannii}
PDB: 3pol_A
Length = 253
Score = 28.2 bits (64), Expect = 3.7
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TDD RI G V+L+S
Sbjct: 49 TDDERIAEIC------RAEGVDVVLTS 69
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 28.3 bits (64), Expect = 4.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 10/33 (30%)
Query: 318 LATTLLAKAKAKGVNL----------LLPSDVV 340
LA TL AK ++L LLPSD++
Sbjct: 57 LAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for
structural genomics of infectious diseases; 1.75A
{Vibrio cholerae o1 biovar el tor}
Length = 252
Score = 27.8 bits (63), Expect = 4.3
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TDD R+ AV G V ++S
Sbjct: 49 TDDERVEQAV------QAFGGVVCMTS 69
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope;
1.80A {Coxiella burnetii}
Length = 256
Score = 27.9 bits (63), Expect = 4.3
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TDD RIR GA V ++S
Sbjct: 56 TDDKRIRQVA------EDFGAVVCMTS 76
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13
PDB: 1vh3_A 3duv_A*
Length = 262
Score = 27.9 bits (63), Expect = 4.7
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TD+ + GA+V ++S
Sbjct: 49 TDNENVADVA------KSFGAEVCMTS 69
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family;
structural genomics, oxidoreductase, PSI-2; HET: UGA;
1.70A {Porphyromonas gingivalis}
Length = 450
Score = 28.2 bits (64), Expect = 4.7
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKV 127
+ K G +++G+ V + + TDD R ++ I+ L++ G +V
Sbjct: 304 LFDKFSTYYKG-NVQGRCVAI---WGLSFKPG---TDDMREAPSLVLIEKLLEVGCRV 354
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 5.4
Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 72/181 (39%)
Query: 110 IRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGP 169
I A V ++ L+Q GAKV++++ R S+
Sbjct: 489 IGAEV--LQGLLQGGAKVVVTTS------------------RFSK--------------- 513
Query: 170 EVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTE 229
+ +Y+ ++ K ++L + N + E
Sbjct: 514 -----------------QVTDYYQSIYA---KYGAKGSTLIVVPFNQG------SKQDVE 547
Query: 230 GVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILL 289
+ +++ + L +LD ++ PFAAI + ++ I+S E ++
Sbjct: 548 ALIEFIYDTEKNGGLGWDLDAII--------PFAAI---PEQGIELEHIDSKSEFAHRIM 596
Query: 290 L 290
L
Sbjct: 597 L 597
Score = 27.5 bits (61), Expect = 9.8
Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 10/53 (18%)
Query: 240 AGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGG 292
+G E+ V VG S +G + +L
Sbjct: 1027 SGITDPYEMYKYVHVS---------EVGNC-SGSGMGGVSALRGMFKDRFKDE 1069
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide biosynthesis,
magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB:
3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 27.5 bits (62), Expect = 6.0
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TD + AV G +V ++
Sbjct: 65 TDHEDVARAV------EAAGGEVCMTR 85
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 27.2 bits (61), Expect = 7.2
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLV 175
+ + G ++L GR + L L LS + + D + V
Sbjct: 37 CARRFAEAGWSLVL---TGRREE-----RLQALAGELSAKTRVLPLTLDVRDRAAMSAAV 88
Query: 176 ASLPE 180
+LPE
Sbjct: 89 DNLPE 93
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase;
nucleotidyltransferase, CMP-KDO synthetase, nucleoside
monophosphate glycosides; 1.83A {Escherichia coli} SCOP:
c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A*
1h7h_A* 1h7t_A*
Length = 245
Score = 27.1 bits (61), Expect = 7.8
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TDD R+ AV G K I++
Sbjct: 50 TDDPRVEQAV------QAFGGKAIMTR 70
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 27.1 bits (61), Expect = 8.0
Identities = 5/38 (13%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 99 DDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136
+ ++ + +K + +G K+++++ GR
Sbjct: 26 FETHKVSQSSID-----ALKKVHDSGIKIVIAT--GRA 56
>3pv9_D Putative uncharacterized protein PH1245; crispr, crispr-associated
CAS1, metallonuclease, DNAse, PROK system, immune
system, nuclease; 2.85A {Pyrococcus horikoshii}
Length = 322
Score = 27.4 bits (61), Expect = 8.5
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 70 MAKKSV-----GELSGADLKGKKVFVRAD---LNVPLDDNQNITDDTRIRAAVPTIKHLI 121
M KK + G L+ + ++ + + ++ +I + + ++
Sbjct: 1 MRKKPLTIFSDGTLT---RRENTLYFESAKGRKPLAIEGIYDIYIYGHVNITSQALHYIA 57
Query: 122 QNGAKVILSSHLGRPKGV 139
Q G + +H G G
Sbjct: 58 QKGILIHFFNHYGYYDGT 75
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped
dimer, enzyme complex with COFA product, oxidoreductase;
HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP:
a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Length = 436
Score = 27.5 bits (62), Expect = 8.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKV 127
TDD R V + LI G ++
Sbjct: 327 TDDLRESPLVELAEMLIGKGYEL 349
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase
family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A*
2y5e_A* 2x4b_A
Length = 884
Score = 27.5 bits (61), Expect = 8.9
Identities = 3/44 (6%), Positives = 8/44 (18%), Gaps = 1/44 (2%)
Query: 190 RFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRA-HASTEGVT 232
F L + + R+ + +
Sbjct: 548 GGNPFGNPLQQGFNTGLFLEPNGFYQGNEADTRRSLATYADQIQ 591
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate
synthesis, exopolysaccharide, C fibrosis; HET: UGA;
1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Length = 478
Score = 27.1 bits (61), Expect = 9.5
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKV 127
+A K + G DL G+ A + N TDD R + I L+ GA++
Sbjct: 314 LADK-IVARFGEDLTGRTF---AIWGLAFKPN---TDDMREAPSRELIAELLSRGARI 364
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.362
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,118,753
Number of extensions: 314233
Number of successful extensions: 1184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1129
Number of HSP's successfully gapped: 66
Length of query: 360
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 265
Effective length of database: 4,049,298
Effective search space: 1073063970
Effective search space used: 1073063970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)