RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018105
(360 letters)
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 290 bits (743), Expect = 1e-96
Identities = 170/286 (59%), Positives = 215/286 (75%), Gaps = 6/286 (2%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
M KK++ ++ D++GK+VF R D NVP++ ITDDTRIRAA+PTI++LI++GAKVIL
Sbjct: 1 MNKKTIRDV---DVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAKVIL 56
Query: 130 SSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
+SHLGRPKG V + L + RL ELL V K ++ +G EV+ V L EG VLLLEN
Sbjct: 57 ASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLEN 116
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248
VRFY EEKNDPE AK A LADLYVNDAFG AHRAHASTEG+ YL P+VAGFL++KEL
Sbjct: 117 VRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEL 175
Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308
+ L A+S+P RPF AI+GG+KV KIGVI++LLE D L++GGG+ +TF KA G VG
Sbjct: 176 EVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK 235
Query: 309 SLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
SL+EEDK++LA + + KAK KGV +P DVV+AD+FA DAN+KV
Sbjct: 236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVV 281
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 248 bits (633), Expect = 8e-80
Identities = 140/305 (45%), Positives = 200/305 (65%), Gaps = 24/305 (7%)
Query: 69 SMA-KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK- 126
S++ K SV +L DLK K+VF+R D NVPLD + IT + RI AA+PTIK+++++ +
Sbjct: 1 SLSSKLSVQDL---DLKDKRVFIRVDFNVPLDGKK-ITSNQRIVAALPTIKYVLEHHPRY 56
Query: 127 VILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLL 185
V+L+SHLG+P G K+SLAP+ L LLG V +DC+GPEVE V + G V+L
Sbjct: 57 VVLASHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVIL 116
Query: 186 LENVRFYKEEE--------------KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGV 231
LEN+R++ EEE ++ +F +L+SLAD+Y+NDAFGTAHRAH+S G
Sbjct: 117 LENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVG- 175
Query: 232 TKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLG 291
L AGFLL+KEL Y A+ +P RPF AI+GG+KV+ KI +I++LL+ D +++G
Sbjct: 176 -FDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIG 234
Query: 292 GGMIFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDAN 350
GGM FTF K + +G S+ ++ ++ L+ KAKAKGV ++LP D +IAD F+ DAN
Sbjct: 235 GGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADAN 294
Query: 351 SKVCF 355
+K
Sbjct: 295 TKTVT 299
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 244 bits (623), Expect = 3e-78
Identities = 131/302 (43%), Positives = 186/302 (61%), Gaps = 23/302 (7%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGA-KVILS 130
K S+ +L D+K KKV VR D NVP+++ I D RI A +PTI HL + GA K+IL
Sbjct: 7 KLSISDL--KDIKNKKVLVRVDFNVPIENGI-IKDTNRITATLPTINHLKKEGASKIILI 63
Query: 131 SHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENV 189
SH GRP G K++L P+ L LLG +V+ +DC+G EVE + + E V+LLEN+
Sbjct: 64 SHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENL 123
Query: 190 RFYKEEE---------------KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKY 234
RF+ EEE ++ +F L LAD+++NDAFGTAHRAH+S GV
Sbjct: 124 RFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSMVGVKLN 183
Query: 235 LKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGM 294
+K S FL++KEL+Y A+ +P+RP AI+GG+KVS KI +I++LL+ D +++GGGM
Sbjct: 184 VKASG--FLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGM 241
Query: 295 IFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
+TF K + +G+SL +E + ++ KAKAK V + LP D IAD F +AN+K
Sbjct: 242 AYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKF 301
Query: 354 CF 355
Sbjct: 302 VT 303
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 242 bits (618), Expect = 1e-77
Identities = 131/302 (43%), Positives = 181/302 (59%), Gaps = 25/302 (8%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILS 130
K ++ +L ++KGK+V +R D NVP+ Q IT++ RI+AAVP+IK + +GAK V+L
Sbjct: 2 KLTLDKL---NVKGKRVVMRVDFNVPMAAAQ-ITNNARIKAAVPSIKFCLDDGAKSVVLM 57
Query: 131 SHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
SHLGRP G + K+SL P+ L LG V+ DC+GP VEK A G V+LLEN
Sbjct: 58 SHLGRPDGSPMPDKYSLQPVAAELKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLEN 117
Query: 189 VRFYKEEEK---------------NDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
+RF+ EEE F L++L D+YVNDAFGTAHRAH+S GV
Sbjct: 118 LRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVNDAFGTAHRAHSSMVGVN- 176
Query: 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGG 293
L FL++KEL+Y A SP+RPF AI+GG+KV+ KI +I ++L+ + +++GGG
Sbjct: 177 -LPKKAGAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGG 235
Query: 294 MIFTFYK-AQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSK 352
M FTF K + +G+SL +E + L++KA A GV + LP D V ADKF A
Sbjct: 236 MAFTFLKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIG 295
Query: 353 VC 354
Sbjct: 296 QA 297
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 240 bits (614), Expect = 4e-77
Identities = 161/284 (56%), Positives = 206/284 (72%), Gaps = 6/284 (2%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
K ++ ++ DLKGK+V +R D NVP+ D + DDTRIRAA+PTIK+ ++ GAKVIL S
Sbjct: 2 KMTIRDV---DLKGKRVIMRVDFNVPVKDGV-VQDDTRIRAALPTIKYALEQGAKVILLS 57
Query: 132 HLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190
HLGRPKG +P+FSLAP+ RLSELLG +V +G EV+K V L EG VLLLEN R
Sbjct: 58 HLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTR 117
Query: 191 FYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDY 250
F+ E KNDPE AK ASLAD++VNDAFGTAHRAHAS G+ +++ PSVAGFL++KE+ +
Sbjct: 118 FHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI-PSVAGFLMEKEIKF 176
Query: 251 LVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSL 310
L +P++P+ ++GG+KVS KIGVI +L+E D +L+GG M+FTF KA G VGSS
Sbjct: 177 LSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSR 236
Query: 311 VEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
VEEDK+DLA L+ KAK KGV ++LP D VIA K P KV
Sbjct: 237 VEEDKIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVV 280
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
[TaxId: 274]}
Length = 390
Score = 232 bits (593), Expect = 4e-74
Identities = 138/277 (49%), Positives = 178/277 (64%), Gaps = 2/277 (0%)
Query: 78 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK 137
L D KGK+V VR D NVP+ D + + D+TRI ++PT++HL+ GA ++L SHLGRPK
Sbjct: 4 LLDLDPKGKRVLVRVDYNVPVQDGK-VQDETRILESLPTLRHLLAGGASLVLLSHLGRPK 62
Query: 138 GVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEK 197
G PK+SLAP+ L L E + +L G VLLLENVRF EEK
Sbjct: 63 GPDPKYSLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEK 122
Query: 198 NDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSS 257
NDPE + + A L + +V DAFG+AHRAHAS GV + L AGFL++KE+ L +
Sbjct: 123 NDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLLPA-YAGFLMEKEVRALSRLLKD 181
Query: 258 PKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLD 317
P+RP+A ++GG+KVS KIGVIESLL D LL+GG M FTF KA G VG SLVEED+LD
Sbjct: 182 PERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLD 241
Query: 318 LATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354
LA LL +A+A GV + LP DVV A++ ++V
Sbjct: 242 LAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVF 278
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
[TaxId: 5691]}
Length = 415
Score = 215 bits (547), Expect = 6e-67
Identities = 132/309 (42%), Positives = 181/309 (58%), Gaps = 27/309 (8%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
KKS+ E DLKGKKV +R D NVP+ + + IT+D RIR+A+PT+K ++ G +L S
Sbjct: 2 KKSINEC---DLKGKKVLIRVDFNVPVKNGK-ITNDYRIRSALPTLKKVLTEGGSCVLMS 57
Query: 132 HLGRPKG-----------------VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL 174
HLGRPKG K +L P+ RLSELL V A DC+
Sbjct: 58 HLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADV-- 115
Query: 175 VASLPEGGVLLLENVRFYKEEEKND----PEFAKKLASLADLYVNDAFGTAHRAHASTEG 230
V+ + G V+LLENVRFYKEE AK LAS D+Y++DAFGTAHR A+ G
Sbjct: 116 VSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTG 175
Query: 231 VTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLL 290
+ K L AG+L++KE+ Y + +P RP AIVGG+KVS KI +++++L+ D LL+
Sbjct: 176 IPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLI 235
Query: 291 GGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDAN 350
GG M +TF KAQG S+G S EE KL+ A +LL KA+ + V ++LP D V +F +
Sbjct: 236 GGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDS 295
Query: 351 SKVCFLNSY 359
+ +
Sbjct: 296 PLITEDQNI 304
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 30.3 bits (67), Expect = 0.35
Identities = 6/39 (15%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136
L+ ++ + ++ ++G +V++S+ GR
Sbjct: 13 LNSKHQVSLENE-----NALRQAQRDGIEVVVST--GRA 44
>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli
[TaxId: 562]}
Length = 258
Score = 28.2 bits (61), Expect = 1.4
Identities = 2/35 (5%), Positives = 12/35 (34%)
Query: 104 ITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG 138
+ + + + + ++ + ++ H G
Sbjct: 14 LDSEEALERLFSALVNYRESHQRPLVIVHGGGCVV 48
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli
[TaxId: 562]}
Length = 84
Score = 25.8 bits (56), Expect = 2.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 164 DDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVN 215
D I E+E + + E V+ E+V E+ K DP+ A+KL L + Y
Sbjct: 13 DKKIRSEIEAIKKIIAEFDVVK-ESVNELSEKAKTDPQAAEKLNKLIEGYTY 63
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella
flexneri [TaxId: 623]}
Length = 228
Score = 27.0 bits (59), Expect = 3.6
Identities = 6/61 (9%), Positives = 16/61 (26%)
Query: 30 RMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVF 89
R+ + + L S+ + + + + G K+V
Sbjct: 54 RVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQLICRKGESGNVKRVG 113
Query: 90 V 90
+
Sbjct: 114 L 114
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga
(Porphyridium purpureum) [TaxId: 35688]}
Length = 242
Score = 26.6 bits (58), Expect = 4.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 172 EKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLAS 208
+ ++P + N + +E K DPEF +LA+
Sbjct: 19 QPAGQAMPGKSNIFANNEAWRQEMLKQDPEFFNRLAN 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.362
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,174,671
Number of extensions: 52194
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 14
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)