Query 018106
Match_columns 360
No_of_seqs 162 out of 2182
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 3.6E-21 7.9E-26 164.0 2.0 274 17-333 95-390 (419)
2 KOG4341 F-box protein containi 99.6 4.2E-18 9E-23 151.5 -5.8 177 17-228 68-254 (483)
3 PLN00113 leucine-rich repeat r 99.1 5.7E-10 1.2E-14 117.0 11.6 194 142-340 93-318 (968)
4 PLN00113 leucine-rich repeat r 99.0 1.3E-09 2.9E-14 114.2 10.4 128 213-341 233-367 (968)
5 PF12937 F-box-like: F-box-lik 98.9 7E-10 1.5E-14 70.5 2.9 36 20-55 1-36 (47)
6 KOG3207 Beta-tubulin folding c 98.9 5.2E-10 1.1E-14 101.0 1.6 173 168-340 120-311 (505)
7 cd00116 LRR_RI Leucine-rich re 98.9 1.3E-08 2.8E-13 92.9 10.3 178 164-341 76-289 (319)
8 KOG2120 SCF ubiquitin ligase, 98.8 4.2E-10 9E-15 97.0 -0.7 203 136-342 153-375 (419)
9 PLN03210 Resistant to P. syrin 98.8 3.1E-08 6.7E-13 105.1 11.1 62 284-346 778-841 (1153)
10 cd00116 LRR_RI Leucine-rich re 98.8 8.9E-09 1.9E-13 93.9 5.9 197 142-341 23-261 (319)
11 PLN03210 Resistant to P. syrin 98.7 1E-07 2.2E-12 101.2 10.8 125 216-346 778-909 (1153)
12 KOG4341 F-box protein containi 98.7 2.3E-09 5.1E-14 96.3 -1.3 204 142-347 138-389 (483)
13 KOG4194 Membrane glycoprotein 98.7 2.9E-09 6.3E-14 99.5 -0.7 171 166-339 266-448 (873)
14 KOG1909 Ran GTPase-activating 98.6 5.7E-08 1.2E-12 85.7 5.9 211 110-340 29-280 (382)
15 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.4E-13 92.5 0.5 176 142-319 146-336 (505)
16 PF00646 F-box: F-box domain; 98.6 1.8E-08 4E-13 64.3 1.3 38 19-56 2-39 (48)
17 KOG1947 Leucine rich repeat pr 98.5 1.4E-07 3E-12 91.1 5.5 204 142-347 188-444 (482)
18 KOG4194 Membrane glycoprotein 98.5 3.8E-08 8.2E-13 92.3 0.9 171 168-339 172-401 (873)
19 KOG3665 ZYG-1-like serine/thre 98.4 1.5E-07 3.2E-12 93.5 4.3 152 168-319 121-285 (699)
20 smart00256 FBOX A Receptor for 98.4 2E-07 4.2E-12 57.2 1.8 34 23-56 1-34 (41)
21 KOG1909 Ran GTPase-activating 98.3 5.2E-07 1.1E-11 79.7 4.5 177 142-320 92-309 (382)
22 PF14580 LRR_9: Leucine-rich r 98.3 6.7E-07 1.4E-11 73.4 4.3 40 280-319 109-150 (175)
23 PF14580 LRR_9: Leucine-rich r 98.3 2.1E-07 4.7E-12 76.3 1.3 74 282-355 86-165 (175)
24 KOG2982 Uncharacterized conser 98.1 4E-06 8.7E-11 72.8 4.0 182 142-325 71-265 (418)
25 KOG0618 Serine/threonine phosp 97.9 9.6E-07 2.1E-11 87.1 -2.2 158 160-321 301-488 (1081)
26 KOG0444 Cytoskeletal regulator 97.9 1.1E-07 2.4E-12 89.9 -9.2 186 154-343 158-375 (1255)
27 KOG0444 Cytoskeletal regulator 97.9 4.4E-07 9.5E-12 86.0 -5.6 174 142-322 197-375 (1255)
28 KOG1947 Leucine rich repeat pr 97.8 1.1E-05 2.4E-10 77.9 2.4 178 168-345 160-366 (482)
29 PRK15387 E3 ubiquitin-protein 97.8 6.4E-05 1.4E-09 75.6 7.7 30 310-340 383-412 (788)
30 PRK15370 E3 ubiquitin-protein 97.6 0.00013 2.9E-09 73.5 6.9 10 239-248 284-293 (754)
31 KOG3665 ZYG-1-like serine/thre 97.6 5E-05 1.1E-09 75.8 3.5 148 191-339 122-284 (699)
32 KOG2982 Uncharacterized conser 97.4 0.0001 2.2E-09 64.3 3.1 150 169-319 45-209 (418)
33 KOG0617 Ras suppressor protein 97.4 2.7E-06 5.9E-11 68.1 -6.8 150 165-319 29-183 (264)
34 COG5238 RNA1 Ran GTPase-activa 97.3 0.00021 4.5E-09 61.6 3.7 131 188-319 89-252 (388)
35 PRK15370 E3 ubiquitin-protein 97.2 0.00047 1E-08 69.6 5.7 180 142-341 178-378 (754)
36 KOG1259 Nischarin, modulator o 97.2 5.8E-05 1.3E-09 65.8 -0.6 128 189-320 282-410 (490)
37 KOG1859 Leucine-rich repeat pr 97.2 6.7E-05 1.5E-09 72.8 -1.1 99 107-215 51-153 (1096)
38 PRK15387 E3 ubiquitin-protein 97.1 0.0013 2.8E-08 66.4 7.4 139 159-319 214-352 (788)
39 KOG2739 Leucine-rich acidic nu 97.1 0.00017 3.6E-09 61.8 0.6 103 167-269 41-152 (260)
40 KOG4658 Apoptotic ATPase [Sign 97.0 0.00019 4.1E-09 73.6 0.9 200 142-345 571-785 (889)
41 KOG4658 Apoptotic ATPase [Sign 97.0 0.0061 1.3E-07 62.8 11.5 148 169-318 523-677 (889)
42 PF13855 LRR_8: Leucine rich r 97.0 0.00023 4.9E-09 47.7 0.6 39 280-319 21-59 (61)
43 KOG4237 Extracellular matrix p 96.9 0.00017 3.8E-09 65.2 -0.8 59 280-339 270-331 (498)
44 KOG2739 Leucine-rich acidic nu 96.9 0.00016 3.4E-09 62.0 -1.1 39 281-319 88-126 (260)
45 PF13855 LRR_8: Leucine rich r 96.8 0.00036 7.7E-09 46.7 0.1 56 170-226 2-59 (61)
46 KOG0618 Serine/threonine phosp 96.7 0.00054 1.2E-08 68.4 0.9 122 168-295 358-487 (1081)
47 PRK15386 type III secretion pr 96.6 0.0049 1.1E-07 57.3 6.5 27 216-246 94-120 (426)
48 KOG0617 Ras suppressor protein 96.6 4E-05 8.8E-10 61.5 -6.2 129 161-297 48-186 (264)
49 KOG1644 U2-associated snRNP A' 96.4 0.0036 7.9E-08 51.8 3.6 82 167-249 62-151 (233)
50 COG5238 RNA1 Ran GTPase-activa 96.3 0.0042 9.2E-08 53.8 3.9 190 130-319 44-282 (388)
51 COG4886 Leucine-rich repeat (L 96.3 0.0033 7.2E-08 59.2 3.2 79 169-249 116-197 (394)
52 PRK15386 type III secretion pr 96.1 0.02 4.2E-07 53.4 7.1 71 189-268 50-120 (426)
53 PF07723 LRR_2: Leucine Rich R 96.0 0.01 2.2E-07 31.9 3.1 25 192-216 1-26 (26)
54 KOG0281 Beta-TrCP (transducin 95.9 0.0023 5E-08 56.7 0.2 39 14-52 69-111 (499)
55 PLN03150 hypothetical protein; 95.8 0.02 4.3E-07 57.3 6.3 79 240-319 420-500 (623)
56 KOG1259 Nischarin, modulator o 95.7 0.016 3.5E-07 51.0 4.7 53 282-337 305-359 (490)
57 KOG2123 Uncharacterized conser 95.6 0.0017 3.6E-08 56.4 -1.7 96 239-336 20-123 (388)
58 KOG0472 Leucine-rich repeat pr 95.5 0.00019 4.1E-09 65.1 -8.1 47 157-203 125-172 (565)
59 PLN03150 hypothetical protein; 95.5 0.033 7.2E-07 55.7 6.6 103 218-320 420-526 (623)
60 KOG2997 F-box protein FBX9 [Ge 95.5 0.0064 1.4E-07 53.5 1.3 36 17-52 104-144 (366)
61 PF12799 LRR_4: Leucine Rich r 95.3 0.024 5.1E-07 35.0 3.3 34 284-319 1-34 (44)
62 KOG3864 Uncharacterized conser 95.3 0.0036 7.8E-08 51.8 -0.6 79 171-249 103-187 (221)
63 KOG1644 U2-associated snRNP A' 95.3 0.015 3.3E-07 48.3 2.9 103 191-296 42-152 (233)
64 COG4886 Leucine-rich repeat (L 95.2 0.016 3.4E-07 54.6 3.1 167 142-319 116-287 (394)
65 KOG2123 Uncharacterized conser 95.2 0.0014 3.1E-08 56.8 -3.5 80 166-246 38-125 (388)
66 PF12799 LRR_4: Leucine Rich r 94.7 0.017 3.7E-07 35.6 1.4 35 191-227 1-35 (44)
67 KOG0472 Leucine-rich repeat pr 94.5 0.00058 1.3E-08 62.1 -7.8 89 157-247 148-237 (565)
68 PLN03215 ascorbic acid mannose 94.4 0.023 4.9E-07 52.3 1.9 38 19-56 3-41 (373)
69 KOG4237 Extracellular matrix p 94.0 0.015 3.3E-07 53.0 0.0 46 158-203 79-128 (498)
70 KOG0531 Protein phosphatase 1, 93.6 0.0077 1.7E-07 57.2 -2.7 100 165-268 91-194 (414)
71 KOG1859 Leucine-rich repeat pr 93.5 0.013 2.9E-07 57.5 -1.4 145 168-319 83-264 (1096)
72 KOG3864 Uncharacterized conser 93.0 0.051 1.1E-06 45.2 1.4 69 279-347 120-193 (221)
73 KOG0532 Leucine-rich repeat (L 92.4 0.018 4E-07 54.9 -2.1 134 160-298 112-248 (722)
74 KOG0532 Leucine-rich repeat (L 91.2 0.012 2.6E-07 56.2 -4.6 179 155-340 84-270 (722)
75 PF13306 LRR_5: Leucine rich r 90.9 0.26 5.6E-06 38.0 3.4 11 281-291 78-88 (129)
76 KOG0274 Cdc4 and related F-box 90.1 0.12 2.6E-06 50.5 0.9 42 12-53 100-141 (537)
77 KOG0531 Protein phosphatase 1, 89.9 0.039 8.5E-07 52.4 -2.6 125 167-296 70-198 (414)
78 smart00367 LRR_CC Leucine-rich 88.6 0.22 4.8E-06 26.6 0.9 19 329-347 1-19 (26)
79 smart00367 LRR_CC Leucine-rich 88.3 0.35 7.6E-06 25.8 1.6 22 190-211 1-23 (26)
80 PF13516 LRR_6: Leucine Rich r 87.7 0.36 7.9E-06 25.1 1.4 22 190-211 1-22 (24)
81 PF13013 F-box-like_2: F-box-l 84.6 0.5 1.1E-05 35.4 1.2 30 19-48 21-50 (109)
82 KOG3926 F-box proteins [Amino 81.4 0.43 9.3E-06 41.3 -0.2 51 17-67 199-256 (332)
83 PF13306 LRR_5: Leucine rich r 80.5 1.7 3.8E-05 33.2 3.0 11 281-292 101-111 (129)
84 KOG3763 mRNA export factor TAP 76.1 2.5 5.4E-05 40.7 3.1 79 188-266 215-307 (585)
85 PF13504 LRR_7: Leucine rich r 75.8 2 4.3E-05 20.3 1.2 11 331-341 2-12 (17)
86 smart00368 LRR_RI Leucine rich 66.2 5.8 0.00013 21.5 1.9 23 284-306 2-24 (28)
87 KOG4579 Leucine-rich repeat (L 64.7 1.1 2.5E-05 35.1 -1.5 58 238-296 53-112 (177)
88 KOG4579 Leucine-rich repeat (L 64.0 0.91 2E-05 35.7 -2.1 60 167-228 51-112 (177)
89 PF09372 PRANC: PRANC domain; 59.4 11 0.00024 27.5 3.0 25 18-42 70-94 (97)
90 KOG4308 LRR-containing protein 58.1 0.23 5.1E-06 47.8 -7.8 158 163-320 109-301 (478)
91 PF00560 LRR_1: Leucine Rich R 56.6 5.3 0.00012 20.1 0.6 8 311-318 2-9 (22)
92 KOG3763 mRNA export factor TAP 53.9 12 0.00026 36.3 3.0 77 238-315 218-307 (585)
93 KOG4408 Putative Mg2+ and Co2+ 36.7 11 0.00025 33.9 -0.0 40 20-59 8-47 (386)
94 smart00370 LRR Leucine-rich re 32.2 35 0.00075 17.7 1.5 12 284-295 2-13 (26)
95 smart00369 LRR_TYP Leucine-ric 32.2 35 0.00075 17.7 1.5 12 284-295 2-13 (26)
96 smart00446 LRRcap occurring C- 22.1 64 0.0014 17.3 1.3 16 210-225 7-22 (26)
97 smart00365 LRR_SD22 Leucine-ri 21.5 71 0.0015 17.0 1.4 12 285-296 3-14 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.6e-21 Score=163.97 Aligned_cols=274 Identities=23% Similarity=0.251 Sum_probs=185.3
Q ss_pred cccccCCchHHHHHHhcCCChhhhhhhcccccchhhhhccc---ceEEeeCCCcCCCCCCCcccccccccccchhhHhHH
Q 018106 17 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSF---PILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVK 93 (360)
Q Consensus 17 ~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (360)
+--+..|||||+..||+.|+.+|+.+++.|||||.++...- ..+++..+...+
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p------------------------ 150 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP------------------------ 150 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh------------------------
Confidence 33478899999999999999999999999999999764321 123444444322
Q ss_pred HHHHHHHHHHhhhhcCCcccceEEEEeecCCCCCChhhHHHHHHHH--HHcCceEEEeecccCCCccccCcccccccCCc
Q 018106 94 KFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYTLPQAIFSANSV 171 (360)
Q Consensus 94 ~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~--~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L 171 (360)
+...+.+ ...+..|++- ... . +-++..+.+ ...++++++ +.........+...+..|..|
T Consensus 151 ---~~l~~l~------~rgV~v~Rla--r~~-~----~~prlae~~~~frsRlq~lD--LS~s~it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 151 ---DVLGRLL------SRGVIVFRLA--RSF-M----DQPRLAEHFSPFRSRLQHLD--LSNSVITVSTLHGILSQCSKL 212 (419)
T ss_pred ---hHHHHHH------hCCeEEEEcc--hhh-h----cCchhhhhhhhhhhhhHHhh--cchhheeHHHHHHHHHHHHhh
Confidence 2223333 2344444433 110 1 112233322 335688888 655555556666677779999
Q ss_pred cEEEEeeeeccCCC--CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCcc---cccc-CCCccEEE
Q 018106 172 TNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSK-ASKLKIME 244 (360)
Q Consensus 172 ~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~-l~~L~~L~ 244 (360)
+.|+|.+..+.++- ....=.+|+.|+++++.- +..+++-++..|..|.+|+|..|...... .+.+ -++|+.|+
T Consensus 213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LN 292 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLN 292 (419)
T ss_pred hhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhh
Confidence 99999999887654 333447899999999985 88889999999999999999999765432 1111 27999999
Q ss_pred ecccc-----chhhhHhhcCCCccEEEEEeecC-CCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEec
Q 018106 245 IRSFS-----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVT 317 (360)
Q Consensus 245 l~~~~-----~~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~ 317 (360)
+++|. ..+..+...||+|..|+++++.. .......+.+++.|++|+++.+. +....+.+ +...|.|.+|++.
T Consensus 293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVF 371 (419)
T ss_pred hhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee-eccCcceEEEEec
Confidence 99987 33444456899999999996543 22333456788999999997665 33343443 5678999999999
Q ss_pred CcCChhh---hhhcCCccc
Q 018106 318 RCCLPGK---IKISSNQLK 333 (360)
Q Consensus 318 ~c~~~~~---i~~~~~~L~ 333 (360)
+|..... +...+++|+
T Consensus 372 g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 372 GCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred cccCchHHHHHHHhCcccc
Confidence 9844433 334444433
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.63 E-value=4.2e-18 Score=151.53 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=102.9
Q ss_pred cccccC-CchHHHHHHhcCCChhhhhhhcccccchhhhhcccce-EEeeCCCcCCCCCCCcccccccccccchhhHhHHH
Q 018106 17 MDRISE-LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPI-LDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKK 94 (360)
Q Consensus 17 ~d~i~~-LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (360)
.+-++. ||.|++.+||++|+.+.+++++++|+-|+.+...... -..+..++....+.
T Consensus 68 ~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g--------------------- 126 (483)
T KOG4341|consen 68 NNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG--------------------- 126 (483)
T ss_pred cccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC---------------------
Confidence 344554 9999999999999999999999999999865211100 01222222111111
Q ss_pred HHHHHHHHHhhhhcCCcccceEEEEeecCCCCCChhhHHHHHHHH--HHcCceEEEeecccCCCcccc-CcccccccCCc
Q 018106 95 FMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYT-LPQAIFSANSV 171 (360)
Q Consensus 95 ~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~--~~~~l~~L~~~l~~~~~~~~~-l~~~l~~~~~L 171 (360)
..|..++ ...++.+++++++-... .-++-+..+ ..+++++|. +..+..-... +......|+.|
T Consensus 127 --~VV~~~~---~Rcgg~lk~LSlrG~r~-------v~~sslrt~~~~CpnIehL~--l~gc~~iTd~s~~sla~~C~~l 192 (483)
T KOG4341|consen 127 --GVVENMI---SRCGGFLKELSLRGCRA-------VGDSSLRTFASNCPNIEHLA--LYGCKKITDSSLLSLARYCRKL 192 (483)
T ss_pred --cceehHh---hhhcccccccccccccc-------CCcchhhHHhhhCCchhhhh--hhcceeccHHHHHHHHHhcchh
Confidence 1222223 12346777777664421 122222222 237777776 6555432222 22222237888
Q ss_pred cEEEEeeeeccCCC----CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCC
Q 018106 172 TNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG 228 (360)
Q Consensus 172 ~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~ 228 (360)
++|++..|..-... .+.+||+|+.|+++++.- ++.+++.+..+|..++++.+++|..
T Consensus 193 ~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e 254 (483)
T KOG4341|consen 193 RHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE 254 (483)
T ss_pred hhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc
Confidence 88888776532211 445778888888877764 5566777777777777777777655
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.09 E-value=5.7e-10 Score=116.96 Aligned_cols=194 Identities=16% Similarity=0.148 Sum_probs=88.8
Q ss_pred cCceEEEeecccCCCccccCccccc-ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 220 (360)
++++.|+ +..+. ....+|..++ .+++|++|++++|.+........+++|++|.++++.++.... ..+..+++|++
T Consensus 93 ~~L~~L~--Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTIN--LSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKV 168 (968)
T ss_pred CCCCEEE--CCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCC-hHHhcCCCCCE
Confidence 5677777 43221 1224555555 466777777776665432223345666666666665532211 22455566666
Q ss_pred EEeecCCCCCcc--ccccCCCccEEEecccc--chhhhHh------------------------hcCCCccEEEEEeecC
Q 018106 221 LCFSNCWGLKHL--CVSKASKLKIMEIRSFS--EEIEIVE------------------------ISVPSLQQLTLLFYGA 272 (360)
Q Consensus 221 L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~--~~~~~~~------------------------~~~p~L~~L~l~~~~~ 272 (360)
|++.+|.....+ .+..+++|+.|++.+|. ..+.... ..+++|++|++..+..
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 666655432211 12334555555555443 0011111 2334444444443332
Q ss_pred CCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEecccc
Q 018106 273 RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 273 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c 340 (360)
....+..+..+++|+.|++.++.+.+.. ...+..+++|++|++++|... .......++|+.|++.++
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 2223333444555555555544443321 112334455555555555211 122234456666666554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.01 E-value=1.3e-09 Score=114.25 Aligned_cols=128 Identities=16% Similarity=0.047 Sum_probs=64.1
Q ss_pred hcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc--chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccE
Q 018106 213 SECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKK 288 (360)
Q Consensus 213 ~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 288 (360)
..+++|++|++.+|...+.+ .+..+++|+.|.+.++. .........+++|++|+++.+......+..+..+++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 34445555555444322111 12234555555555543 111111124456666666544333333334456667777
Q ss_pred EEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106 289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 289 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~ 341 (360)
|++.++.+.... ...+..+++|++|++.+|... .......++|+.|+++++.
T Consensus 313 L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 313 LHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred EECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 777666654432 233456777777777776322 2223345677777776654
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.93 E-value=7e-10 Score=70.47 Aligned_cols=36 Identities=31% Similarity=0.683 Sum_probs=31.4
Q ss_pred ccCCchHHHHHHhcCCChhhhhhhcccccchhhhhc
Q 018106 20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV 55 (360)
Q Consensus 20 i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~ 55 (360)
|..||+||+.+||++|+.+|+++++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999998653
No 6
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.2e-10 Score=100.96 Aligned_cols=173 Identities=20% Similarity=0.179 Sum_probs=120.1
Q ss_pred cCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCC---CccccccCCCc
Q 018106 168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---KHLCVSKASKL 240 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~i~~l~~L 240 (360)
.+.|+...|.++.+...+ ....||+++.|+|+.+-+ ....+..++...|+||.|+|+.+... .......++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 567888888888876555 567899999999999887 67778888999999999999876431 11111245899
Q ss_pred cEEEecccc---chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEec
Q 018106 241 KIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT 317 (360)
Q Consensus 241 ~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 317 (360)
+.|.+..|. ..+..+...+|+|+.|.+..+..-.........+..|+.|+|+++.+.+.........+|.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 999999997 34556667899999999985531111112234467888888888776654444456678888888888
Q ss_pred CcCC--h-------hhhhhcCCccceEecccc
Q 018106 318 RCCL--P-------GKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 318 ~c~~--~-------~~i~~~~~~L~~L~l~~c 340 (360)
.|.. + .+.....++|+.|.+..-
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccC
Confidence 7711 1 112235677888877543
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=1.3e-08 Score=92.89 Aligned_cols=178 Identities=20% Similarity=0.146 Sum_probs=107.9
Q ss_pred cccccCCccEEEEeeeeccCCC--CccCC---CCCCEEEeeeEEeChHHHHHH---HhcC-CcccEEEeecCCCCCc---
Q 018106 164 AIFSANSVTNLRLVWCRLEQPF--DSIML---CSLKKLTLERVCLDEQMVQKL---ASEC-PLLEDLCFSNCWGLKH--- 231 (360)
Q Consensus 164 ~l~~~~~L~~L~L~~~~~~~~~--~~~~~---~~L~~L~L~~~~~~~~~l~~l---~~~c-p~Le~L~l~~c~~~~~--- 231 (360)
.+..+++|+.|++.+|.+.... ....+ ++|++|+++++.+++.....+ +..+ ++|++|++.+|.....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 3445678888888887765221 11112 458888888887765444432 3455 7888888888864321
Q ss_pred -c--ccccCCCccEEEecccc---chhhhHh---hcCCCccEEEEEeecCCCc----ceeeccCCCCccEEEeeccccCc
Q 018106 232 -L--CVSKASKLKIMEIRSFS---EEIEIVE---ISVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDLVSVYFAD 298 (360)
Q Consensus 232 -~--~i~~l~~L~~L~l~~~~---~~~~~~~---~~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 298 (360)
+ .+..+++|+.|++.+|. ..+..+. ...++|++|++..+..... ....+..+++|+.|+++++.+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 0 12234678888888776 1122222 2446888888885543221 12234567888888888887777
Q ss_pred HHHHHHhcCC----CCCCEEEecCcCCh----hhh---hhcCCccceEeccccc
Q 018106 299 NEFNHLISKF----PSLEDLFVTRCCLP----GKI---KISSNQLKNLLFRSCK 341 (360)
Q Consensus 299 ~~~~~~~~~~----~~L~~L~L~~c~~~----~~i---~~~~~~L~~L~l~~c~ 341 (360)
..+..+...+ +.|++|++.+|... ..+ ....++|+.++++++.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 5555554443 68888888887331 122 2234678888887654
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.2e-10 Score=96.95 Aligned_cols=203 Identities=22% Similarity=0.166 Sum_probs=135.7
Q ss_pred HHHHHHcCceEEEeecccCCCccc-cCcccccccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHHH
Q 018106 136 IRLAVENGVRELDFENITDENTVY-TLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKL 211 (360)
Q Consensus 136 l~~~~~~~l~~L~~~l~~~~~~~~-~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l 211 (360)
+.....+++..+. +.......- -.+.....-..|++|+|+...+.... ....|.+||.|++.+.+.+|+-...
T Consensus 153 l~~l~~rgV~v~R--lar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~- 229 (419)
T KOG2120|consen 153 LGRLLSRGVIVFR--LARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT- 229 (419)
T ss_pred HHHHHhCCeEEEE--cchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-
Confidence 4555667888887 432111111 11111111356899999887665443 3457889999999999988777666
Q ss_pred HhcCCcccEEEeecCCCCCcccc----ccCCCccEEEeccccchhhhH----hhcCCCccEEEEEeecCC---Ccceeec
Q 018106 212 ASECPLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGAR---RPRVVEV 280 (360)
Q Consensus 212 ~~~cp~Le~L~l~~c~~~~~~~i----~~l~~L~~L~l~~~~~~~~~~----~~~~p~L~~L~l~~~~~~---~~~~~~~ 280 (360)
++....|+.|+|++|.+++...+ ++|.+|..|+++.|...-+.+ .-.-|+|+.|.++++-.. .......
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 45568899999999999876543 578999999999998222222 124578999999833211 1112234
Q ss_pred cCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCCh--hhhh--hcCCccceEecccccc
Q 018106 281 ARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLP--GKIK--ISSNQLKNLLFRSCKY 342 (360)
Q Consensus 281 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~~--~~i~--~~~~~L~~L~l~~c~~ 342 (360)
..||+|.+|+|+.+. ++++. ...+-.++.|++|.++.|..+ +.+. ...|.|..|++.+|-.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 779999999998665 56654 445668999999999999433 2222 3578999999988743
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.78 E-value=3.1e-08 Score=105.08 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=38.5
Q ss_pred CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh--cCCccceEecccccccccc
Q 018106 284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI--SSNQLKNLLFRSCKYLKSA 346 (360)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~--~~~~L~~L~l~~c~~l~~~ 346 (360)
++|+.|++.++..... +...+..+++|+.|+|.+|..++.+.. .+++|+.|++++|..++..
T Consensus 778 ~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence 4566666655432222 222356778888888888865555432 3567888888888766543
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.77 E-value=8.9e-09 Score=93.95 Aligned_cols=197 Identities=17% Similarity=0.109 Sum_probs=130.9
Q ss_pred cCceEEEeecccCCCcc---ccCcccccccCCccEEEEeeeeccC--CC------CccCCCCCCEEEeeeEEeCh---HH
Q 018106 142 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQ--PF------DSIMLCSLKKLTLERVCLDE---QM 207 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~L~~~~~~~--~~------~~~~~~~L~~L~L~~~~~~~---~~ 207 (360)
.+++++. +..+.... ..++..+...++|++|.+.++.+.. .. ....+++|+.|.++++.+.. ..
T Consensus 23 ~~L~~l~--l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLR--LEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred hhccEEe--ecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 5599999 65443322 2344445557889999999887652 21 22347799999999998743 23
Q ss_pred HHHHHhcCCcccEEEeecCCCCCc------cccccC-CCccEEEeccccc---hhhhH---hhcCCCccEEEEEeecCCC
Q 018106 208 VQKLASECPLLEDLCFSNCWGLKH------LCVSKA-SKLKIMEIRSFSE---EIEIV---EISVPSLQQLTLLFYGARR 274 (360)
Q Consensus 208 l~~l~~~cp~Le~L~l~~c~~~~~------~~i~~l-~~L~~L~l~~~~~---~~~~~---~~~~p~L~~L~l~~~~~~~ 274 (360)
+..+... ++|++|++.+|..... ..+..+ ++|+.|++.+|.- ....+ ...+++|+.|++..+....
T Consensus 101 ~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 101 LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 4444444 6799999999864321 112345 8999999999871 11222 2356789999999665542
Q ss_pred cc----eeeccCCCCccEEEeeccccCcHH---HHHHhcCCCCCCEEEecCcCCh----hhhhhc----CCccceEeccc
Q 018106 275 PR----VVEVARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLP----GKIKIS----SNQLKNLLFRS 339 (360)
Q Consensus 275 ~~----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~c~~~----~~i~~~----~~~L~~L~l~~ 339 (360)
.. ...+...++|+.|++.++.+++.. +...+..+++|++|++++|... ..+... .++|++|++.+
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 11 122445679999999998887644 3445667899999999998432 222222 37999999998
Q ss_pred cc
Q 018106 340 CK 341 (360)
Q Consensus 340 c~ 341 (360)
|.
T Consensus 260 n~ 261 (319)
T cd00116 260 ND 261 (319)
T ss_pred CC
Confidence 84
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.67 E-value=1e-07 Score=101.21 Aligned_cols=125 Identities=25% Similarity=0.318 Sum_probs=77.6
Q ss_pred CcccEEEeecCCCCCccc--cccCCCccEEEeccccchhhhHh--hcCCCccEEEEEeecCCCcceeeccCCCCccEEEe
Q 018106 216 PLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 291 (360)
Q Consensus 216 p~Le~L~l~~c~~~~~~~--i~~l~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 291 (360)
|+|+.|++.+|.....+. +.++++|+.|++.+|. .+..+. +.+++|++|.++.|.....++ ...++|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~-~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p---~~~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI-NLETLPTGINLESLESLDLSGCSRLRTFP---DISTNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCC-CcCeeCCCCCccccCEEECCCCCcccccc---ccccccCEeEC
Confidence 455555555554433322 2345667777777665 333332 245667777776443221111 12357888888
Q ss_pred eccccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh---cCCccceEecccccccccc
Q 018106 292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKSA 346 (360)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~---~~~~L~~L~l~~c~~l~~~ 346 (360)
.++.++. +...+..+++|++|+|.+|..+..+.. ..++|+.+++.+|..++..
T Consensus 854 s~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 854 SRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 8777653 344467899999999999977766543 4567888899999888753
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=2.3e-09 Score=96.33 Aligned_cols=204 Identities=19% Similarity=0.195 Sum_probs=137.3
Q ss_pred cCceEEEeecccCCCcc-ccCcccccccCCccEEEEeeeeccCCC----CccCCCCCCEEEeeeEE-eChHHHHHHHhcC
Q 018106 142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVC-LDEQMVQKLASEC 215 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~c 215 (360)
..++++. +..+.... ..+-.....|+++++|.+.+|...+.. ....|++|+.|.+..|. +++..++.+..+|
T Consensus 138 g~lk~LS--lrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELS--LRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccc--ccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 5688888 76654433 344444556999999999998743222 55679999999998865 4888899899999
Q ss_pred CcccEEEeecCCCCCcccc----ccCCCccEEEecccc-chhh---hHhhcCCC--------------------------
Q 018106 216 PLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFS-EEIE---IVEISVPS-------------------------- 261 (360)
Q Consensus 216 p~Le~L~l~~c~~~~~~~i----~~l~~L~~L~l~~~~-~~~~---~~~~~~p~-------------------------- 261 (360)
|+|++|+++.|+.+..-.+ .++..++.+...+|. .+++ .+.-.++-
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 9999999999987654222 234556666555665 1122 22223333
Q ss_pred ccEEEEEeecCCC--cceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCC-----hhhhhhcCCccc
Q 018106 262 LQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCL-----PGKIKISSNQLK 333 (360)
Q Consensus 262 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~-----~~~i~~~~~~L~ 333 (360)
|+.+..+.+.... .......++++|+.|.+.++. +++..+..+..+++.|+.+++.+|.. +......|+.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 3333333211111 111123568899999998765 88888888888999999999998822 233445789999
Q ss_pred eEeccccccccccc
Q 018106 334 NLLFRSCKYLKSAL 347 (360)
Q Consensus 334 ~L~l~~c~~l~~~~ 347 (360)
+|++++|..+++.+
T Consensus 376 ~lslshce~itD~g 389 (483)
T KOG4341|consen 376 VLSLSHCELITDEG 389 (483)
T ss_pred cCChhhhhhhhhhh
Confidence 99999999998873
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.67 E-value=2.9e-09 Score=99.50 Aligned_cols=171 Identities=20% Similarity=0.171 Sum_probs=111.6
Q ss_pred cccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCC--CCccccccCCCcc
Q 018106 166 FSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG--LKHLCVSKASKLK 241 (360)
Q Consensus 166 ~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--~~~~~i~~l~~L~ 241 (360)
+.+.++++|+|..+++.... ...++..|++|+++++.+..-.... ++.|++|++|+|+++.. +..-....+..|+
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 34677778888777765332 4556778888888888763333333 56799999999998753 2222233457899
Q ss_pred EEEecccc-chhhhHh-hcCCCccEEEEEeecC---CCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEe
Q 018106 242 IMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGA---RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316 (360)
Q Consensus 242 ~L~l~~~~-~~~~~~~-~~~p~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L 316 (360)
.|.++.+. +.+.... ....+|+.|++..+.. .+.....+..++.|+.|.+.|+++..- ..+.+.++++||.|+|
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALEHLDL 423 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-chhhhccCcccceecC
Confidence 99998775 3333322 3567788888873322 223344567799999999999987653 3455789999999999
Q ss_pred cCcCC---hhhhhhcCCccceEeccc
Q 018106 317 TRCCL---PGKIKISSNQLKNLLFRS 339 (360)
Q Consensus 317 ~~c~~---~~~i~~~~~~L~~L~l~~ 339 (360)
.++.. ..+..... .||+|.+..
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcc
Confidence 99722 12222233 677776543
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=5.7e-08 Score=85.67 Aligned_cols=211 Identities=22% Similarity=0.274 Sum_probs=116.7
Q ss_pred CcccceEEEEeecCCCCCChhhHHHHHHHHHH--cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCc
Q 018106 110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDS 187 (360)
Q Consensus 110 ~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~--~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~ 187 (360)
...+.++++.-. ..+....+|+....+ +.+++.+++-.+..+....+|..+ +.|. . ..
T Consensus 29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L------~~l~-------~--aL 88 (382)
T KOG1909|consen 29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL------KMLS-------K--AL 88 (382)
T ss_pred cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH------HHHH-------H--HH
Confidence 445555554422 233356678877655 566666633233333334444322 1000 0 12
Q ss_pred cCCCCCCEEEeeeEEe---ChHHHHHHHhcCCcccEEEeecCCCCC-----------cc----ccccCCCccEEEecccc
Q 018106 188 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLK-----------HL----CVSKASKLKIMEIRSFS 249 (360)
Q Consensus 188 ~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~-----------~~----~i~~l~~L~~L~l~~~~ 249 (360)
..+|.|++|+|+++-+ +...+..++++|..|++|.|.+|..-. .+ .+.+-|.|+++....+.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 3455666666666665 345567778888888888888875410 01 11233678888777665
Q ss_pred ---ch---hhhHhhcCCCccEEEEEeecCCCcce----eeccCCCCccEEEeeccccCc---HHHHHHhcCCCCCCEEEe
Q 018106 250 ---EE---IEIVEISVPSLQQLTLLFYGARRPRV----VEVARSPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDLFV 316 (360)
Q Consensus 250 ---~~---~~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~L 316 (360)
.+ +....-..|.|+.+++..++...... ..+..||+|+.|+|..+.++. ..+.+.++.+|+|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 11 11122355778888887555433222 234667888888887766654 344555667777888888
Q ss_pred cCcC--------ChhhhhhcCCccceEecccc
Q 018106 317 TRCC--------LPGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 317 ~~c~--------~~~~i~~~~~~L~~L~l~~c 340 (360)
+.|. ....+....|+|+.|.+.++
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 8771 11223334566666666554
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.1e-08 Score=92.52 Aligned_cols=176 Identities=21% Similarity=0.173 Sum_probs=110.0
Q ss_pred cCceEEEeecccCCCc-cccCcccccccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHHHHhcCCc
Q 018106 142 NGVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPL 217 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~-~~~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 217 (360)
++++.|+ +...-.. ...+-..+-..++|+.|+++.+.+.... ....+++||+|.|+.|.++...+..++..||.
T Consensus 146 ~~v~~Ld--LS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 146 PNVRDLD--LSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred Ccceeec--chhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 5677777 4322111 1223333445788999999888765332 33468899999999999999999999999999
Q ss_pred ccEEEeecCCCCCccccc--cCCCccEEEecccc---chhhhHhhcCCCccEEEEEeecCCCcc------eeeccCCCCc
Q 018106 218 LEDLCFSNCWGLKHLCVS--KASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPR------VVEVARSPHL 286 (360)
Q Consensus 218 Le~L~l~~c~~~~~~~i~--~l~~L~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~------~~~~~~~~~L 286 (360)
|+.|.+.++..+.....+ -+..|+.|++.++. .......-.+|.|+-|.+..++...-. ......+|.|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 999999988543222211 23588888888776 111122346777777777755542211 1113456778
Q ss_pred cEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 287 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 287 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+.|.+..+.+.+.....-+...++|+.|.+..+
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhhcccc
Confidence 888777666644323333445666666665543
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.58 E-value=1.8e-08 Score=64.27 Aligned_cols=38 Identities=39% Similarity=0.737 Sum_probs=32.1
Q ss_pred cccCCchHHHHHHhcCCChhhhhhhcccccchhhhhcc
Q 018106 19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS 56 (360)
Q Consensus 19 ~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~ 56 (360)
.++.||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 46789999999999999999999999999999988754
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.49 E-value=1.4e-07 Score=91.10 Aligned_cols=204 Identities=22% Similarity=0.292 Sum_probs=129.1
Q ss_pred cCceEEEeecccCCCcc-ccCcccccccCCccEEEEeee-eccC-C-----CCccCCCCCCEEEeeeEE-eChHHHHHHH
Q 018106 142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWC-RLEQ-P-----FDSIMLCSLKKLTLERVC-LDEQMVQKLA 212 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~~-~~~~-~-----~~~~~~~~L~~L~L~~~~-~~~~~l~~l~ 212 (360)
+.++++. +..+.... ..+......++.|+.|.+.+| .... . .....+++|+.|.+.++. +++..+..+.
T Consensus 188 ~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 188 PLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred chhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 5667776 44332222 123445566899999999873 2111 1 144567899999999888 6889999888
Q ss_pred hcCCcccEEEeecCCCCCcccc----ccCCCccEEEecccc----chhhhHhhcCCCccEEEEEeecC------------
Q 018106 213 SECPLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA------------ 272 (360)
Q Consensus 213 ~~cp~Le~L~l~~c~~~~~~~i----~~l~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~------------ 272 (360)
..||+||.|.+.+|..++...+ ..+++|+.|++..|. ..+..+...+|+|+.|.+.....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 8899999999888886544333 246889999999887 22445555788888877653221
Q ss_pred -----CCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCC--------------CEEEecCcCChh-----hhhhc
Q 018106 273 -----RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL--------------EDLFVTRCCLPG-----KIKIS 328 (360)
Q Consensus 273 -----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--------------~~L~L~~c~~~~-----~i~~~ 328 (360)
..........+++++.+.+......+......+.+||+| +.|.+..|.... .....
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~ 425 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS 425 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhh
Confidence 012223356788888888876665554445666777766 566666662211 11112
Q ss_pred CCccceEeccccccccccc
Q 018106 329 SNQLKNLLFRSCKYLKSAL 347 (360)
Q Consensus 329 ~~~L~~L~l~~c~~l~~~~ 347 (360)
+..++.+.+.+|..++...
T Consensus 426 ~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred hhccccCCccCcccccchh
Confidence 5566777777776665543
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.47 E-value=3.8e-08 Score=92.26 Aligned_cols=171 Identities=20% Similarity=0.169 Sum_probs=89.9
Q ss_pred cCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCC--CCccccccCCCccEE
Q 018106 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG--LKHLCVSKASKLKIM 243 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--~~~~~i~~l~~L~~L 243 (360)
..++++|+|.++.+.... ....+.+|..|.|++++++.-.. ..+++.|+|+.|+|..+.. ...+...++++|+.|
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 467888888888776433 44556677888888877753332 2366778888887776643 112223344444444
Q ss_pred Eecccc-c---------------------hhhhHh----hcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106 244 EIRSFS-E---------------------EIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (360)
Q Consensus 244 ~l~~~~-~---------------------~~~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (360)
.+..+. . .+..+. ..+..|+.|+++.+....-....++.+++|+.|+|+++.++
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 444332 0 111111 12344455555533332222234566777777777666543
Q ss_pred c---HH--------------------HHHHhcCCCCCCEEEecCcCC---hh---hhhhcCCccceEeccc
Q 018106 298 D---NE--------------------FNHLISKFPSLEDLFVTRCCL---PG---KIKISSNQLKNLLFRS 339 (360)
Q Consensus 298 ~---~~--------------------~~~~~~~~~~L~~L~L~~c~~---~~---~i~~~~~~L~~L~l~~ 339 (360)
. .. -...+.++.+|++|+|+.+.. ++ ....+.++|++|.+.+
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 2 11 112244456677777766511 11 1223466777777764
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.44 E-value=1.5e-07 Score=93.51 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=113.5
Q ss_pred cCCccEEEEeeeeccCCC----CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEE
Q 018106 168 ANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM 243 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L 243 (360)
-.+|++|+++|...-... .+..||+|++|.+.+..+..+.+..+..++|+|..|+++++..-.-..++.+++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 367888888885433222 4457999999999999997777888999999999999999875555667788999999
Q ss_pred Eecccc-chhhhH--hhcCCCccEEEEEeecCCCccee------eccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEE
Q 018106 244 EIRSFS-EEIEIV--EISVPSLQQLTLLFYGARRPRVV------EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 314 (360)
Q Consensus 244 ~l~~~~-~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 314 (360)
.+.+-. .....+ ...+.+|+.|+++.........+ --..+|+|+.|+.++..+..+.+..++..-|+|+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 988665 111111 23788999999994332222111 124589999999999999999999999988998888
Q ss_pred EecCc
Q 018106 315 FVTRC 319 (360)
Q Consensus 315 ~L~~c 319 (360)
..-.|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 76654
No 20
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.36 E-value=2e-07 Score=57.20 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=31.7
Q ss_pred CchHHHHHHhcCCChhhhhhhcccccchhhhhcc
Q 018106 23 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS 56 (360)
Q Consensus 23 LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~ 56 (360)
||+|++.+||++++.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987643
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=5.2e-07 Score=79.71 Aligned_cols=177 Identities=17% Similarity=0.170 Sum_probs=115.2
Q ss_pred cCceEEEeecccCCCcc---ccCcccccccCCccEEEEeeeeccCCC---------------CccCCCCCCEEEeeeEEe
Q 018106 142 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF---------------DSIMLCSLKKLTLERVCL 203 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~L~~~~~~~~~---------------~~~~~~~L~~L~L~~~~~ 203 (360)
+.++.++ +.-....+ -.+-..+.+|.+|++|.|.+|.+.+.+ ....=|.|+++...+++.
T Consensus 92 ~~L~~ld--LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 92 PKLQKLD--LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CceeEee--ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4889998 53332222 223334556999999999999876543 122346899999999998
Q ss_pred C---hHHHHHHHhcCCcccEEEeecCCCCCc------cccccCCCccEEEeccccchh---hhHh---hcCCCccEEEEE
Q 018106 204 D---EQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFSEEI---EIVE---ISVPSLQQLTLL 268 (360)
Q Consensus 204 ~---~~~l~~l~~~cp~Le~L~l~~c~~~~~------~~i~~l~~L~~L~l~~~~~~~---~~~~---~~~p~L~~L~l~ 268 (360)
. ...+...+..+|.|+++.+..+..... .....+|+|+.|++..+.... ..+. ...|+|+.+.++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 3 334666778899999999988754221 122357999999998776111 1221 255678888888
Q ss_pred eecCCCcceee-----ccCCCCccEEEeeccccCcHHHHH---HhcCCCCCCEEEecCcC
Q 018106 269 FYGARRPRVVE-----VARSPHLKKLDLVSVYFADNEFNH---LISKFPSLEDLFVTRCC 320 (360)
Q Consensus 269 ~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~L~~c~ 320 (360)
+|-........ -...|+|+.|.+.++.++.+.... ....-|.|+.|+|++|.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 66543332222 134788888888888776543333 23346788888888873
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.30 E-value=6.7e-07 Score=73.44 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=16.3
Q ss_pred ccCCCCccEEEeeccccCc--HHHHHHhcCCCCCCEEEecCc
Q 018106 280 VARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~c 319 (360)
+..+|+|+.|++.++.++. .--..++..+|+|+.|+-...
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 4456666666666655433 112333445566666655443
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.30 E-value=2.1e-07 Score=76.34 Aligned_cols=74 Identities=19% Similarity=0.066 Sum_probs=33.8
Q ss_pred CCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh------hhhhhcCCccceEecccccccccccccceeeee
Q 018106 282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP------GKIKISSNQLKNLLFRSCKYLKSALCVKVFSTL 355 (360)
Q Consensus 282 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~------~~i~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 355 (360)
.+|+|+.|.+.++.+.+-.-...+..+|+|+.|+|.+|+.. ..+...+|+|+.|+-.....-.....-..|...
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f~~~ 165 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKLFKGK 165 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B-----------
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhcccccccccc
Confidence 57888888888777755322344678999999999998432 235568999999997766665555555555543
No 24
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=4e-06 Score=72.79 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=129.5
Q ss_pred cCceEEEeecccC-CCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106 142 NGVRELDFENITD-ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (360)
Q Consensus 142 ~~l~~L~~~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 218 (360)
..|++++ +... .....++.+.+-+.|.|+.|+|+++.+.+.- .+....+|++|.|.+...+.......+...|.+
T Consensus 71 ~~v~elD--L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELD--LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhh--cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4678888 5333 2233445555556899999999999887654 224566999999999988888888999999999
Q ss_pred cEEEeecCCC----CCccccc-cCCCccEEEecccc----chhhhHhhcCCCccEEEEEeecCCC-cceeeccCCCCccE
Q 018106 219 EDLCFSNCWG----LKHLCVS-KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKK 288 (360)
Q Consensus 219 e~L~l~~c~~----~~~~~i~-~l~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~ 288 (360)
++|.++.+.. .+.-.+. --+.++.|+...|. .+...+.-.+||+.++.+..+.... .........|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999887632 1111111 11688888988887 3444555678999999999664432 22234456788888
Q ss_pred EEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhh
Q 018106 289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI 325 (360)
Q Consensus 289 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i 325 (360)
|.|..+.+.+.+-..-+.+||.|..|.+.+++..+.+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 8898888766544555889999999999998655544
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.93 E-value=9.6e-07 Score=87.12 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=107.6
Q ss_pred cCcccccccCCccEEEEeeeeccCCC---------------------------CccCCCCCCEEEeeeEEeChHHHHHHH
Q 018106 160 TLPQAIFSANSVTNLRLVWCRLEQPF---------------------------DSIMLCSLKKLTLERVCLDEQMVQKLA 212 (360)
Q Consensus 160 ~l~~~l~~~~~L~~L~L~~~~~~~~~---------------------------~~~~~~~L~~L~L~~~~~~~~~l~~l~ 212 (360)
.+|......++|++|+|..+.+..-+ ....++.|+.|.+.++.+++..+. ++
T Consensus 301 yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l 379 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VL 379 (1081)
T ss_pred hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hh
Confidence 44445555677778887776543211 122345677788888888777766 46
Q ss_pred hcCCcccEEEeecCC--CCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEE
Q 018106 213 SECPLLEDLCFSNCW--GLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL 289 (360)
Q Consensus 213 ~~cp~Le~L~l~~c~--~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 289 (360)
.+.++|+.|+|.++. .+....+.+++.|+.|.++++. ..+..-...++.|+.|....+.. ..++ .+..++.|+.+
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVL 457 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEE
Confidence 788999999999884 2334445567888999999886 22332234677788777663222 3334 67889999999
Q ss_pred EeeccccCcHHHHHHhcCCCCCCEEEecCcCC
Q 018106 290 DLVSVYFADNEFNHLISKFPSLEDLFVTRCCL 321 (360)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 321 (360)
|++.+.++...+.+.... |+|++|+++++..
T Consensus 458 DlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 999998877666654444 8999999999853
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.88 E-value=1.1e-07 Score=89.92 Aligned_cols=186 Identities=15% Similarity=0.064 Sum_probs=98.0
Q ss_pred CCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc
Q 018106 154 DENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH 231 (360)
Q Consensus 154 ~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~ 231 (360)
+......+|+.+.+...|++|.|+++.+.... ....+.+|++|++++..-+...+..-+....+|.+++++.+.....
T Consensus 158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v 237 (1255)
T KOG0444|consen 158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV 237 (1255)
T ss_pred ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc
Confidence 34445566666666777777777776654221 1223345555566665544333333344556677777765432111
Q ss_pred -cccccCCCccEEEeccccchhhhHh---hcCCCccEEEEEeecCC------------------------CcceeeccCC
Q 018106 232 -LCVSKASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGAR------------------------RPRVVEVARS 283 (360)
Q Consensus 232 -~~i~~l~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~------------------------~~~~~~~~~~ 283 (360)
-.+-.+++|++|+++++. +..+. -.-.+|++|.++.+... +..+..++++
T Consensus 238 Pecly~l~~LrrLNLS~N~--iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNK--ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCc--eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 112235677777777664 11111 01123444444422221 1222334455
Q ss_pred CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc--CChhhhhhcCCccceEeccccccc
Q 018106 284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC--CLPGKIKISSNQLKNLLFRSCKYL 343 (360)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c--~~~~~i~~~~~~L~~L~l~~c~~l 343 (360)
.+|+.+...++.+. .+.+-+..|+.|+.|.|+.+ ..+...+...+.|+.|++..-+++
T Consensus 316 ~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHhhccccc--cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 55555555544432 23444566788888888776 233445556778888888876654
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.86 E-value=4.4e-07 Score=86.04 Aligned_cols=174 Identities=17% Similarity=0.088 Sum_probs=119.8
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 220 (360)
..++.|+ +....+....+|..+-...+|..++++.+.++..+ ....+++|++|+|+++.+++-.+. .....+||.
T Consensus 197 tsL~vLh--ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~--~~~W~~lEt 272 (1255)
T KOG0444|consen 197 TSLSVLH--MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT--EGEWENLET 272 (1255)
T ss_pred hhhhhhh--cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc--HHHHhhhhh
Confidence 3455556 55556667788888888899999999998877554 556789999999999988544332 344578999
Q ss_pred EEeecCCCCCc-cccccCCCccEEEeccccchhhhHhh---cCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 221 LCFSNCWGLKH-LCVSKASKLKIMEIRSFSEEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 221 L~l~~c~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
|+++.+....- -.+..+++|+.|.+.++.-.++.+.. .+.+|+.|... ++..+-.+..+..|+.|+.|.|+.+.+
T Consensus 273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa-nN~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA-NNKLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh-ccccccCchhhhhhHHHHHhcccccce
Confidence 99998753221 12335688988888776533333322 33456666665 333345566788999999999988774
Q ss_pred CcHHHHHHhcCCCCCCEEEecCcCCh
Q 018106 297 ADNEFNHLISKFPSLEDLFVTRCCLP 322 (360)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~c~~~ 322 (360)
.. +.+.+.-+|.|+.|++..++.+
T Consensus 352 iT--LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 352 IT--LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ee--chhhhhhcCCcceeeccCCcCc
Confidence 32 3344556789999999998543
No 28
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.79 E-value=1.1e-05 Score=77.86 Aligned_cols=178 Identities=24% Similarity=0.341 Sum_probs=104.8
Q ss_pred cCCccEEEEeeeeccCCC-----CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecC-CCCCc------ccc
Q 018106 168 ANSVTNLRLVWCRLEQPF-----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNC-WGLKH------LCV 234 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c-~~~~~------~~i 234 (360)
+..++.+++..+...... ....+|+|+.|.+.++.. .+..+..+...||+|++|++.+| ..... ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL 239 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh
Confidence 445556665554422111 233478999999988864 66667788889999999999873 22111 111
Q ss_pred ccCCCccEEEecccc----chhhhHhhcCCCccEEEEEeecC-CC-cceeeccCCCCccEEEeeccc-cCcHHHHHHhcC
Q 018106 235 SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-RR-PRVVEVARSPHLKKLDLVSVY-FADNEFNHLISK 307 (360)
Q Consensus 235 ~~l~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~ 307 (360)
..+++|++|++..|. ..+..+...||+|+.|.+..|.. .+ ........+++|++|++.++. +++..+..+...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 235788888888776 23444444577888877554442 11 222234567777777777554 445556666666
Q ss_pred CCCCCEEEecCcC---Chhhhh-----hcC-CccceEeccccccccc
Q 018106 308 FPSLEDLFVTRCC---LPGKIK-----ISS-NQLKNLLFRSCKYLKS 345 (360)
Q Consensus 308 ~~~L~~L~L~~c~---~~~~i~-----~~~-~~L~~L~l~~c~~l~~ 345 (360)
|++|+.|.+..+. .++... ... ..++.+.+.+|.+++.
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~ 366 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTD 366 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcch
Confidence 7776666555442 233222 122 2566666666666655
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.78 E-value=6.4e-05 Score=75.58 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=14.4
Q ss_pred CCCEEEecCcCChhhhhhcCCccceEecccc
Q 018106 310 SLEDLFVTRCCLPGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 310 ~L~~L~L~~c~~~~~i~~~~~~L~~L~l~~c 340 (360)
+|+.|++++|. +..+....++|+.|+++++
T Consensus 383 ~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N 412 (788)
T PRK15387 383 GLKELIVSGNR-LTSLPVLPSELKELMVSGN 412 (788)
T ss_pred ccceEEecCCc-ccCCCCcccCCCEEEccCC
Confidence 56666666542 2222222345566665554
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.60 E-value=0.00013 Score=73.49 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=5.6
Q ss_pred CccEEEeccc
Q 018106 239 KLKIMEIRSF 248 (360)
Q Consensus 239 ~L~~L~l~~~ 248 (360)
+|+.|++++|
T Consensus 284 sL~~L~Ls~N 293 (754)
T PRK15370 284 ELRYLSVYDN 293 (754)
T ss_pred CCcEEECCCC
Confidence 5555555554
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=5e-05 Score=75.78 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=90.3
Q ss_pred CCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCc---cccccCCCccEEEecccc-chhhhHhhcCCCccEE
Q 018106 191 CSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQL 265 (360)
Q Consensus 191 ~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~---~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L 265 (360)
.+|++|++++... .......+...+|.|+.|.+.+-..... .-..++|+|.+|+|++++ .++..+ -.++||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GI-S~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGI-SRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHH-hccccHHHH
Confidence 4788888888665 5566677777888888888877443222 112357888888888886 233211 256777777
Q ss_pred EEEeecCCC-cceeeccCCCCccEEEeeccccCcH--HHH---HHhcCCCCCCEEEecCcCC----hhhhhhcCCccceE
Q 018106 266 TLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN--EFN---HLISKFPSLEDLFVTRCCL----PGKIKISSNQLKNL 335 (360)
Q Consensus 266 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~---~~~~~~~~L~~L~L~~c~~----~~~i~~~~~~L~~L 335 (360)
.+.+-.... .....+-++.+|+.||++....... .+. +....+|+|+.|+.++... ++.+....|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 777322222 1223455688888888876543322 122 2233478888888887633 34444566666666
Q ss_pred eccc
Q 018106 336 LFRS 339 (360)
Q Consensus 336 ~l~~ 339 (360)
.+-+
T Consensus 281 ~~~~ 284 (699)
T KOG3665|consen 281 AALD 284 (699)
T ss_pred hhhh
Confidence 6543
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0001 Score=64.32 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=94.7
Q ss_pred CCccEEEEeeeeccCCC----CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCC---CCccccccCCCc
Q 018106 169 NSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG---LKHLCVSKASKL 240 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~---~~~~~i~~l~~L 240 (360)
..++-|.+.+|.++..+ ....+..++.|+|.++.+ +++.+..++.+.|.|+.|+|..+.- ++.+..+ ..+|
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p-~~nl 123 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP-LKNL 123 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc-ccce
Confidence 35566777788877655 334578899999999998 6777999999999999999986643 2333322 3699
Q ss_pred cEEEecccc---chhhhHhhcCCCccEEEEEeecCCC---cceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCE
Q 018106 241 KIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARR---PRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLED 313 (360)
Q Consensus 241 ~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~ 313 (360)
++|.+.+.. .....+.-..|.++.|+++.+.... .....-..-+.+++|+..++. ..+....++...||++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 999999887 2333444577888888877543210 000011122345555554333 223334455556666666
Q ss_pred EEecCc
Q 018106 314 LFVTRC 319 (360)
Q Consensus 314 L~L~~c 319 (360)
+.+..|
T Consensus 204 v~v~e~ 209 (418)
T KOG2982|consen 204 VFVCEG 209 (418)
T ss_pred eeeecC
Confidence 666665
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.35 E-value=2.7e-06 Score=68.06 Aligned_cols=150 Identities=17% Similarity=0.112 Sum_probs=64.3
Q ss_pred ccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCC-ccccccCCCccE
Q 018106 165 IFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK-HLCVSKASKLKI 242 (360)
Q Consensus 165 l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~-~~~i~~l~~L~~ 242 (360)
++...+++.|.|+++.+...+ ....+.+|+.|+++++.+.+-. .-++..|+|+.|++..+.... .-...++|.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp--~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELP--TSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcC--hhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 344455555555555443221 3445555666666555542211 224555555555554332100 011123455555
Q ss_pred EEecccc---chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 243 MEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 243 L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
|++..++ ..+..=.....-|+.|.+++++. +..+..++++.+|+.|.+..+++-. +.+-+..+..|+.|+|.++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccc
Confidence 5555443 00000001111233344442222 2233345566666666665544321 1222334555666666664
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.32 E-value=0.00021 Score=61.63 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=79.2
Q ss_pred cCCCCCCEEEeeeEEe---ChHHHHHHHhcCCcccEEEeecCCCCCcc----------------ccccCCCccEEEeccc
Q 018106 188 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLKHL----------------CVSKASKLKIMEIRSF 248 (360)
Q Consensus 188 ~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~~~----------------~i~~l~~L~~L~l~~~ 248 (360)
..||.|++..|+.+.+ ..+.+..++++...|+.|.+.+|.. +.+ .+.+-|.|+++....+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4556666666666655 3466778889999999999998853 211 1123478888777655
Q ss_pred c-ch--hhhH--hh-cCCCccEEEEEeecCCCcc-----eeeccCCCCccEEEeeccccCc---HHHHHHhcCCCCCCEE
Q 018106 249 S-EE--IEIV--EI-SVPSLQQLTLLFYGARRPR-----VVEVARSPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDL 314 (360)
Q Consensus 249 ~-~~--~~~~--~~-~~p~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L 314 (360)
. .+ .... .+ +-.+|+.+++..++..... ...+..+++|+.|+|..+.++- ..+...+..-+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 4 11 1111 11 2257788888766553321 1223457788888887776654 2334445555677888
Q ss_pred EecCc
Q 018106 315 FVTRC 319 (360)
Q Consensus 315 ~L~~c 319 (360)
.+..|
T Consensus 248 ~lnDC 252 (388)
T COG5238 248 RLNDC 252 (388)
T ss_pred cccch
Confidence 88887
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.23 E-value=0.00047 Score=69.62 Aligned_cols=180 Identities=17% Similarity=0.111 Sum_probs=102.3
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
.+..+|. +.. .....+|..+ .++|+.|++.+|.+...+ ...+++|+.|.++++.++. +..-+ .+.|+.|
T Consensus 178 ~~~~~L~--L~~--~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L 246 (754)
T PRK15370 178 NNKTELR--LKI--LGLTTIPACI--PEQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLTS--IPATL--PDTIQEM 246 (754)
T ss_pred cCceEEE--eCC--CCcCcCCccc--ccCCcEEEecCCCCCcCC-hhhccCCCEEECCCCcccc--CChhh--hccccEE
Confidence 4556666 432 2223445433 357999999998876433 2234699999999987741 22111 3579999
Q ss_pred EeecCCCCCccccccCCCccEEEeccccchhhhHhhc-CCCccEEEEEeecCCCcceeec-------------------c
Q 018106 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEIS-VPSLQQLTLLFYGARRPRVVEV-------------------A 281 (360)
Q Consensus 222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~-~p~L~~L~l~~~~~~~~~~~~~-------------------~ 281 (360)
++.+|.. ..+...-..+|+.|+++++. +..+... .++|+.|+++.+.... .+..+ .
T Consensus 247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPET 322 (754)
T ss_pred ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCcc
Confidence 9998864 33322222589999998764 3333322 3478899888544321 11000 1
Q ss_pred CCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhh-hcCCccceEeccccc
Q 018106 282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCK 341 (360)
Q Consensus 282 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~-~~~~~L~~L~l~~c~ 341 (360)
..++|+.|++.++.++. +...+ .++|+.|++++|.. ..+. ...++|+.|+|+++.
T Consensus 323 l~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~L-~~LP~~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 323 LPPGLKTLEAGENALTS--LPASL--PPELQVLDVSKNQI-TVLPETLPPTITTLDVSRNA 378 (754)
T ss_pred ccccceeccccCCcccc--CChhh--cCcccEEECCCCCC-CcCChhhcCCcCEEECCCCc
Confidence 12456666666555432 11111 25788888887632 2221 123578888887764
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.23 E-value=5.8e-05 Score=65.85 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=88.3
Q ss_pred CCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEE
Q 018106 189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTL 267 (360)
Q Consensus 189 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l 267 (360)
.+..|+.++|+++.++ .++.-..-.|.++.|+++.+.....-.+..+++|+.|+++++. .....+...+-|.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 3567889999988763 2222244579999999998865444445667899999999876 444555566778888888
Q ss_pred EeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC
Q 018106 268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (360)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 320 (360)
..+.. .....++++=.|..|++.++++..-.-.+-+.++|+|+++.|.+++
T Consensus 360 a~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 83322 1222345566788888888887553334446789999999998873
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=6.7e-05 Score=72.77 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=53.0
Q ss_pred hcCCcccceEEEEeecCCCCCChhhHHHHHHHH--HHcCceEEEeec-ccCCCccccCcccccccCCccEEEEeeeeccC
Q 018106 107 CKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFEN-ITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ 183 (360)
Q Consensus 107 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~--~~~~l~~L~~~l-~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 183 (360)
-..+.++..|+...+.. +....+.. ++.. +....+.+. + ......+.. |-.++...+|+.|.+.+|.+..
T Consensus 51 g~~g~~~~~f~a~~s~~---ads~vl~q-Lq~i~d~lqkt~~lk--l~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 51 GLSGAPVDYFRAYVSDN---ADSRVLEQ-LQRILDFLQKTKVLK--LLPSPARDPTE-PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred ccCCCCCceeEEecCCc---ccchHHHH-HHHHHHHHhhheeee--ecccCCCCCCC-CceeccccceeeEEecCcchhh
Confidence 34678899998776632 23322222 2222 224555555 3 222333332 6678889999999999998764
Q ss_pred CCCccCC-CCCCEEEeeeEEeChHHHHHHHhcC
Q 018106 184 PFDSIML-CSLKKLTLERVCLDEQMVQKLASEC 215 (360)
Q Consensus 184 ~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~c 215 (360)
.-+...+ .+|++|-..+ +.+.+..+++.|
T Consensus 124 ~~GL~~lr~qLe~LIC~~---Sl~Al~~v~asc 153 (1096)
T KOG1859|consen 124 AKGLQELRHQLEKLICHN---SLDALRHVFASC 153 (1096)
T ss_pred hhhhHHHHHhhhhhhhhc---cHHHHHHHHHHh
Confidence 3222222 2455554333 234455555443
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.11 E-value=0.0013 Score=66.39 Aligned_cols=139 Identities=21% Similarity=0.112 Sum_probs=89.6
Q ss_pred ccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCC
Q 018106 159 YTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKAS 238 (360)
Q Consensus 159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~ 238 (360)
..+|..+. ++|+.|.+.++.+..-+ ...++|++|.++++.++. +. ...++|++|++.+|. +..+... .+
T Consensus 214 tsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~-L~~Lp~l-p~ 282 (788)
T PRK15387 214 TTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHLPAL-PS 282 (788)
T ss_pred CcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--cc---CcccccceeeccCCc-hhhhhhc-hh
Confidence 35665443 47999999998876532 345899999999987742 11 124789999998875 3332221 25
Q ss_pred CccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106 239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (360)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 318 (360)
+|+.|.+.++. +..+....|+|+.|+++.+.... .+ ...++|+.|.+.++.++. +.. ..++|++|+|++
T Consensus 283 ~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~-Lp---~lp~~L~~L~Ls~N~L~~--LP~---lp~~Lq~LdLS~ 351 (788)
T PRK15387 283 GLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS-LP---ALPSELCKLWAYNNQLTS--LPT---LPSGLQELSVSD 351 (788)
T ss_pred hcCEEECcCCc--cccccccccccceeECCCCcccc-CC---CCcccccccccccCcccc--ccc---cccccceEecCC
Confidence 88999998874 44444456889999998554322 11 123467788887776643 111 124788888887
Q ss_pred c
Q 018106 319 C 319 (360)
Q Consensus 319 c 319 (360)
|
T Consensus 352 N 352 (788)
T PRK15387 352 N 352 (788)
T ss_pred C
Confidence 6
No 39
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00017 Score=61.81 Aligned_cols=103 Identities=24% Similarity=0.142 Sum_probs=74.2
Q ss_pred ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCC--CCcc-ccccCCCccE
Q 018106 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG--LKHL-CVSKASKLKI 242 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~--~~~~-~i~~l~~L~~ 242 (360)
....|+.|++.++.+.+......+|+||+|.++.+.. ...++..++..||+|++|+++++.. +.++ ....+++|++
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3567888888888877665677889999999999844 3345666678889999999998753 1221 1234578899
Q ss_pred EEecccc-----chhhhHhhcCCCccEEEEEe
Q 018106 243 MEIRSFS-----EEIEIVEISVPSLQQLTLLF 269 (360)
Q Consensus 243 L~l~~~~-----~~~~~~~~~~p~L~~L~l~~ 269 (360)
|.+..|. +.-+.+..-+|+|++|+-.+
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 9999887 33445556778888887763
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.05 E-value=0.00019 Score=73.63 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=94.2
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 220 (360)
+.++.|+ +.. ......+|..+...-+|++|++.+..+..-+ ....+..|.+|++..+..- ..+..+....++|++
T Consensus 571 ~~LrVLD--Ls~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 571 PLLRVLD--LSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQSLRV 646 (889)
T ss_pred cceEEEE--CCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc-ccccchhhhcccccE
Confidence 4555666 332 3345667777777777777777776665332 3445566667777665431 112344555777888
Q ss_pred EEeecCC-CCCcc---ccccCCCccEEEeccccchhhhHhhcCCCccEEEEEee---cCCCcceeeccCCCCccEEEeec
Q 018106 221 LCFSNCW-GLKHL---CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFY---GARRPRVVEVARSPHLKKLDLVS 293 (360)
Q Consensus 221 L~l~~c~-~~~~~---~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~ 293 (360)
|.+.... ..+.. .+..+.+|+.+.+..+...+..-....++|.++..... .........+..+.+|+.|.+.+
T Consensus 647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred EEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence 8776543 11111 12234555555554333100000122233332222211 11112233456778888888876
Q ss_pred cccCcHHHH---H-Hhc-CCCCCCEEEecCcCChhhhh--hcCCccceEeccccccccc
Q 018106 294 VYFADNEFN---H-LIS-KFPSLEDLFVTRCCLPGKIK--ISSNQLKNLLFRSCKYLKS 345 (360)
Q Consensus 294 ~~~~~~~~~---~-~~~-~~~~L~~L~L~~c~~~~~i~--~~~~~L~~L~l~~c~~l~~ 345 (360)
+.+.+.... . ... .|+++..+.+.+|....... .-.|+|+.|.+..|..+.+
T Consensus 727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc
Confidence 655321110 0 000 24444444444443322221 3345566666655554444
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.03 E-value=0.0061 Score=62.83 Aligned_cols=148 Identities=21% Similarity=0.177 Sum_probs=81.4
Q ss_pred CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCccc--cccCCCccEEEe
Q 018106 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEI 245 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~l~~L~~L~l 245 (360)
...+.+++.++.+........+|.|++|-+.++.. -...-..++...|.|..|++++|.....++ |+.+-+||.|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 56677777776665544566777888888887752 111122346678889999998877666543 445667888877
Q ss_pred ccccchhhhHhhc---CCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecC
Q 018106 246 RSFSEEIEIVEIS---VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTR 318 (360)
Q Consensus 246 ~~~~~~~~~~~~~---~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~ 318 (360)
.++. +..++.. +..|.+|++...+...........+++|++|.+.... -.+.....-+..+.+|+.|++..
T Consensus 603 ~~t~--I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 603 SDTG--ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cCCC--ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 7764 3333322 2244455554322222222223346777777775543 22222222234445555554443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.00 E-value=0.00023 Score=47.66 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=20.0
Q ss_pred ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+..+++|+.|+++++.++.- ....+..+++|++|++++|
T Consensus 21 f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 34555666666655554331 1223455566666666554
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.89 E-value=0.00017 Score=65.17 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=38.1
Q ss_pred ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC---ChhhhhhcCCccceEeccc
Q 018106 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC---LPGKIKISSNQLKNLLFRS 339 (360)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~---~~~~i~~~~~~L~~L~l~~ 339 (360)
++.+|+|++|+++++.++.-. ...+.+...|+.|.|..+. ..+.+......|+.|++.+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIE-DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred HhhcccceEeccCCCccchhh-hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence 567888899999888776532 3335666777777777751 1223345566777777654
No 44
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00016 Score=61.96 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=16.0
Q ss_pred cCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 281 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
.++|+|++|.++++.+.+-.-..-+..+++|..|++.+|
T Consensus 88 e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred hhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 334444444444444433111112333444445555544
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.76 E-value=0.00036 Score=46.69 Aligned_cols=56 Identities=25% Similarity=0.132 Sum_probs=25.8
Q ss_pred CccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecC
Q 018106 170 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC 226 (360)
Q Consensus 170 ~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 226 (360)
+|++|.+.+|.+..-. ....+++|++|.++++.+..-.- ..+.++|+|++|++.+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence 4555555555443211 23445555555555554421111 12445555555555554
No 46
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.70 E-value=0.00054 Score=68.35 Aligned_cols=122 Identities=22% Similarity=0.174 Sum_probs=65.5
Q ss_pred cCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeC-hHHHHHHHhcCCcccEEEeecCCCCCccc--cccCCCccE
Q 018106 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKI 242 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~l~~L~~ 242 (360)
.+.|+.|.+.++.+.+.. ...++++||.|+|+++++. -.+ ..+...+.||+|.|+++. ++.+. +..++.|+.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA--SKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH--HHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHH
Confidence 467888888887776554 4567788888888888663 111 124556778888887764 33222 233455555
Q ss_pred EEeccccchhhhH--hhcCCCccEEEEEeecCCCc-ceeeccCCCCccEEEeeccc
Q 018106 243 MEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSVY 295 (360)
Q Consensus 243 L~l~~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 295 (360)
|...++. +..+ ....|.|+.++++.+..... ....... |+|++|+++|+.
T Consensus 435 L~ahsN~--l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 435 LRAHSNQ--LLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HhhcCCc--eeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 5443332 1111 12455666666663332111 1111111 666666666654
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.62 E-value=0.0049 Score=57.33 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=12.4
Q ss_pred CcccEEEeecCCCCCccccccCCCccEEEec
Q 018106 216 PLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (360)
Q Consensus 216 p~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~ 246 (360)
+.|++|.+.+|..+..+ . ++|+.|.+.
T Consensus 94 ~nLe~L~Ls~Cs~L~sL--P--~sLe~L~L~ 120 (426)
T PRK15386 94 EGLEKLTVCHCPEISGL--P--ESVRSLEIK 120 (426)
T ss_pred hhhhheEccCccccccc--c--cccceEEeC
Confidence 35555555555333221 1 345555554
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.61 E-value=4e-05 Score=61.46 Aligned_cols=129 Identities=18% Similarity=0.121 Sum_probs=71.0
Q ss_pred CcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEe--ChHHHHHHHhcCCcccEEEeecCCCCCccccc--
Q 018106 161 LPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-- 235 (360)
Q Consensus 161 l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-- 235 (360)
+|.-+....+|+.|++.++.+...+ ....+|.|+.|++..++. ...+ ++.+|.||.|++.++..-.. .+.
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg----fgs~p~levldltynnl~e~-~lpgn 122 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG----FGSFPALEVLDLTYNNLNEN-SLPGN 122 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc----cCCCchhhhhhccccccccc-cCCcc
Confidence 3444555667777777777665433 455667777777766554 1122 45567777777776543111 111
Q ss_pred --cCCCccEEEeccccchhhhHh---hcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106 236 --KASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (360)
Q Consensus 236 --~l~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (360)
.+..|+.|.+..+. ++.+. -...+|+.|.+.+++. -..+..++.+..|+.|+|.++.++
T Consensus 123 ff~m~tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhHHHHHHHHHhcCCC--cccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceee
Confidence 12456666665553 22221 1344555555553332 233445667778888888877654
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.38 E-value=0.0036 Score=51.80 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=61.0
Q ss_pred ccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCC-----ccccccCC
Q 018106 167 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLK-----HLCVSKAS 238 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~-----~~~i~~l~ 238 (360)
..+.|..|.+.++++..-. ....+|+|+.|.|.++++ .-.+++. +..||+|++|.+.++..-+ ...+-.+|
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecC
Confidence 4678999999998875332 456789999999999887 4455655 5779999999998876422 23334578
Q ss_pred CccEEEecccc
Q 018106 239 KLKIMEIRSFS 249 (360)
Q Consensus 239 ~L~~L~l~~~~ 249 (360)
+|+.|++....
T Consensus 141 ~l~~LDF~kVt 151 (233)
T KOG1644|consen 141 SLRTLDFQKVT 151 (233)
T ss_pred cceEeehhhhh
Confidence 99999888665
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.34 E-value=0.0042 Score=53.79 Aligned_cols=190 Identities=15% Similarity=0.093 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHH--cCceEEEeecccCCCccccCc-------ccccccCCccEEEEeeeeccCCC------CccCCCCCC
Q 018106 130 PIVDRWIRLAVE--NGVRELDFENITDENTVYTLP-------QAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLK 194 (360)
Q Consensus 130 ~~~~~~l~~~~~--~~l~~L~~~l~~~~~~~~~l~-------~~l~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~ 194 (360)
.....|+...++ ++++...|+-.+.......++ ..+..||+|+..+|+.+.+.+.+ ....-.+|+
T Consensus 44 tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~ 123 (388)
T COG5238 44 TEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLV 123 (388)
T ss_pred HHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCce
Confidence 356678776554 667777743333333333333 35667999999999999887654 334557899
Q ss_pred EEEeeeEEeChH-------HHHH-----HHhcCCcccEEEeecCCCCCc----cc--cccCCCccEEEecccc---chhh
Q 018106 195 KLTLERVCLDEQ-------MVQK-----LASECPLLEDLCFSNCWGLKH----LC--VSKASKLKIMEIRSFS---EEIE 253 (360)
Q Consensus 195 ~L~L~~~~~~~~-------~l~~-----l~~~cp~Le~L~l~~c~~~~~----~~--i~~l~~L~~L~l~~~~---~~~~ 253 (360)
+|.+++|..+.- .+.. -+..-|.||......+..... +. +.+-..|+.+.|..+. .++.
T Consensus 124 HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~ 203 (388)
T COG5238 124 HLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVT 203 (388)
T ss_pred eEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhH
Confidence 999999976321 1111 245678899888665533111 11 1122689999998765 2223
Q ss_pred hHh----hcCCCccEEEEEeecCCCc----ceeeccCCCCccEEEeeccccCcHHHHHHhc-----CCCCCCEEEecCc
Q 018106 254 IVE----ISVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDLVSVYFADNEFNHLIS-----KFPSLEDLFVTRC 319 (360)
Q Consensus 254 ~~~----~~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~L~~c 319 (360)
.+. ..+.+|+.|++.++..... ....+..-++|+.|.+..+-++......++. .+|+|..|-...+
T Consensus 204 ~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 204 MLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 332 3678899999985544221 1222344567899999877665543333332 3689999988887
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.26 E-value=0.0033 Score=59.20 Aligned_cols=79 Identities=19% Similarity=0.081 Sum_probs=38.1
Q ss_pred CCccEEEEeeeeccCCCCccC-C-CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccc-cCCCccEEEe
Q 018106 169 NSVTNLRLVWCRLEQPFDSIM-L-CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIMEI 245 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~~~~~-~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-~l~~L~~L~l 245 (360)
+.++.|.+.++.+..-..... . ++|+.|+++++.+..-. .-+..+|.|+.|++.+|......... ..+.|+.|.+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 445666666555443322222 2 25666666665543211 12445666666666665432222221 3356666666
Q ss_pred cccc
Q 018106 246 RSFS 249 (360)
Q Consensus 246 ~~~~ 249 (360)
+++.
T Consensus 194 s~N~ 197 (394)
T COG4886 194 SGNK 197 (394)
T ss_pred cCCc
Confidence 6553
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.06 E-value=0.02 Score=53.43 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=39.8
Q ss_pred CCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEE
Q 018106 189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL 268 (360)
Q Consensus 189 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~ 268 (360)
.++++++|.+++|.+. .+.. --++|++|.+.+|..+..+.-.-.++|++|.+.+|. .+..+ .+.|+.|.+.
T Consensus 50 ~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~L~ 120 (426)
T PRK15386 50 EARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLEIK 120 (426)
T ss_pred HhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEEeC
Confidence 3677888888777432 1111 123588888877766544331112478888887774 23222 2356666665
No 53
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.02 E-value=0.01 Score=31.94 Aligned_cols=25 Identities=48% Similarity=0.832 Sum_probs=22.0
Q ss_pred CCCEEEeeeEEe-ChHHHHHHHhcCC
Q 018106 192 SLKKLTLERVCL-DEQMVQKLASECP 216 (360)
Q Consensus 192 ~L~~L~L~~~~~-~~~~l~~l~~~cp 216 (360)
+||+|.|.++.+ ++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 489999999998 5558999999998
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.88 E-value=0.0023 Score=56.68 Aligned_cols=39 Identities=28% Similarity=0.611 Sum_probs=36.0
Q ss_pred ccccccccCCc----hHHHHHHhcCCChhhhhhhcccccchhh
Q 018106 14 VVAMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQ 52 (360)
Q Consensus 14 ~~~~d~i~~LP----d~iL~~I~s~L~~~~~~~~~~vskrW~~ 52 (360)
+-+.|-|..|| |+|-+.||+||+..+++.|..|||+|++
T Consensus 69 mLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 69 MLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 33579999999 9999999999999999999999999985
No 55
>PLN03150 hypothetical protein; Provisional
Probab=95.78 E-value=0.02 Score=57.31 Aligned_cols=79 Identities=16% Similarity=0.067 Sum_probs=45.0
Q ss_pred ccEEEecccc--chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEec
Q 018106 240 LKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT 317 (360)
Q Consensus 240 L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 317 (360)
++.|.+.++. ..+..-...+++|+.|+++.+......+..+..+++|+.|+|+++.+.... ...+..+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECc
Confidence 5566666554 111112225566777777655444444445666777777777766665432 3335566777777777
Q ss_pred Cc
Q 018106 318 RC 319 (360)
Q Consensus 318 ~c 319 (360)
+|
T Consensus 499 ~N 500 (623)
T PLN03150 499 GN 500 (623)
T ss_pred CC
Confidence 66
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.71 E-value=0.016 Score=51.01 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=26.2
Q ss_pred CCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc--CChhhhhhcCCccceEec
Q 018106 282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC--CLPGKIKISSNQLKNLLF 337 (360)
Q Consensus 282 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c--~~~~~i~~~~~~L~~L~l 337 (360)
-.|.++.|+++.+.+..- .. +..+++|..|+|+++ ..++.......+.|.|.+
T Consensus 305 L~Pkir~L~lS~N~i~~v--~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTV--QN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hccceeEEeccccceeee--hh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 345666666655554331 11 445566666666665 222333334445555554
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0017 Score=56.42 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=55.4
Q ss_pred CccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106 239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (360)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 318 (360)
+.+.|+.++|.-.-..+....|.|+.|.++-+.. .....+..|.+|++|.|.-+.+.+-.-.+.+.++|+|++|-|..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 4555555555312222333566677766663322 11223456777888877777776644455677788888887777
Q ss_pred cCChh--------hhhhcCCccceEe
Q 018106 319 CCLPG--------KIKISSNQLKNLL 336 (360)
Q Consensus 319 c~~~~--------~i~~~~~~L~~L~ 336 (360)
|+... .+....|+|++|+
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 63221 2334567777776
No 58
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.49 E-value=0.00019 Score=65.13 Aligned_cols=47 Identities=26% Similarity=0.235 Sum_probs=22.5
Q ss_pred ccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEe
Q 018106 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL 203 (360)
Q Consensus 157 ~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~ 203 (360)
....++..++++..|..|+..++.+...+ ....+..|..|.+.++.+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l 172 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL 172 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch
Confidence 33445555555555555555555543322 223344455555544443
No 59
>PLN03150 hypothetical protein; Provisional
Probab=95.46 E-value=0.033 Score=55.69 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=66.0
Q ss_pred ccEEEeecCCCCCc--cccccCCCccEEEecccc--chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106 218 LEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (360)
Q Consensus 218 Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (360)
++.|+|.++...+. ..+..+++|+.|+++++. ..+......+++|+.|+++.+......+..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56666666543222 224456888888888775 12222234678888888886666555666677888888888888
Q ss_pred cccCcHHHHHHhcCCCCCCEEEecCcC
Q 018106 294 VYFADNEFNHLISKFPSLEDLFVTRCC 320 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~ 320 (360)
+.+.......+.....++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 877655444433334566777777764
No 60
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.46 E-value=0.0064 Score=53.53 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=31.3
Q ss_pred cccccCCchHHHHHHhcC-----CChhhhhhhcccccchhh
Q 018106 17 MDRISELPTFIIHHLMSY-----LSAKEVARTSVLSKKWNQ 52 (360)
Q Consensus 17 ~d~i~~LPd~iL~~I~s~-----L~~~~~~~~~~vskrW~~ 52 (360)
.+.|..||||||..||.. ++.+++.++|+|||.|+.
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 356889999999999974 567999999999999984
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.34 E-value=0.024 Score=34.98 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=21.9
Q ss_pred CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
++|++|+++++.+++ +...+..+++|++|++++|
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 467777777777764 3333567777888877776
No 62
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.0036 Score=51.82 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=51.9
Q ss_pred ccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCccccc---cCCCccEEE
Q 018106 171 VTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS---KASKLKIME 244 (360)
Q Consensus 171 L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~---~l~~L~~L~ 244 (360)
++.++-+++.+...+ ....++.++.|.+.+|.. ++..++.+....|+|+.|+|++|..+++..+. .+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 444444444443332 445677788888888876 77778877777888888888888777654432 356777776
Q ss_pred ecccc
Q 018106 245 IRSFS 249 (360)
Q Consensus 245 l~~~~ 249 (360)
+.+-.
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 66433
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.28 E-value=0.015 Score=48.25 Aligned_cols=103 Identities=22% Similarity=0.196 Sum_probs=54.5
Q ss_pred CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc-cc-ccCCCccEEEecccc-chhhhH--hhcCCCccEE
Q 018106 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CV-SKASKLKIMEIRSFS-EEIEIV--EISVPSLQQL 265 (360)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~i-~~l~~L~~L~l~~~~-~~~~~~--~~~~p~L~~L 265 (360)
.+...+.|+++.+.. + ..+.+.|.|..|.+.++.....- .+ .-+|+|+.|.+.+++ ..+..+ ...||.|++|
T Consensus 42 d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 455666666665421 1 12456777778887776542210 01 124778888877764 222222 1367777777
Q ss_pred EEEeecCC---CcceeeccCCCCccEEEeecccc
Q 018106 266 TLLFYGAR---RPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 266 ~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
.+-++... .+-...+..+|+|+.|+.....-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 77643321 12222345667777777765443
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.16 E-value=0.016 Score=54.59 Aligned_cols=167 Identities=20% Similarity=0.133 Sum_probs=105.3
Q ss_pred cCceEEEeecccCCCccccCcccccccC-CccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSAN-SVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~-~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
..+..+. +. ......++......+ +|+.|++.++.+.... ....+++|+.|.++.+.+.+-. ......+.|+
T Consensus 116 ~~l~~L~--l~--~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLD--LD--NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLN 189 (394)
T ss_pred cceeEEe--cC--CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhh
Confidence 3566666 42 333455555555554 8999999999887642 4678999999999999864322 2233689999
Q ss_pred EEEeecCCCCCccccc--cCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 220 DLCFSNCWGLKHLCVS--KASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 220 ~L~l~~c~~~~~~~i~--~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
.|++.++.. ..+... ....|+.|.+.+.. .......-...++..+.+..... ......++.+++++.|++.++.+
T Consensus 190 ~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 190 NLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred heeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccchhccccccceeccccccc
Confidence 999998764 333221 22348888888773 11111122344555555331111 11134457778899999988877
Q ss_pred CcHHHHHHhcCCCCCCEEEecCc
Q 018106 297 ADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
++... +....+|+.|+++++
T Consensus 268 ~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 268 SSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccc---ccccCccCEEeccCc
Confidence 66322 667788999999875
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0014 Score=56.80 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=56.9
Q ss_pred cccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCC-------ccccccC
Q 018106 166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLK-------HLCVSKA 237 (360)
Q Consensus 166 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~-------~~~i~~l 237 (360)
...+.|+.|.|+-+.+........|.+|+.|.|..+.+ +-+.+.. +.+.|+|+.|+|..+.-.+ ...+..+
T Consensus 38 ~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 34678888888888777655567788999999988887 4455553 7888999999997654322 2333457
Q ss_pred CCccEEEec
Q 018106 238 SKLKIMEIR 246 (360)
Q Consensus 238 ~~L~~L~l~ 246 (360)
|+|+.|+=.
T Consensus 117 PnLkKLDnv 125 (388)
T KOG2123|consen 117 PNLKKLDNV 125 (388)
T ss_pred ccchhccCc
Confidence 888887644
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.74 E-value=0.017 Score=35.60 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=21.9
Q ss_pred CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCC
Q 018106 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 227 (360)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 227 (360)
++|++|.++++.+++ +...+..+|+|+.|++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 467777777776642 33336778888888887774
No 67
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.54 E-value=0.00058 Score=62.10 Aligned_cols=89 Identities=18% Similarity=0.123 Sum_probs=43.7
Q ss_pred ccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccc
Q 018106 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS 235 (360)
Q Consensus 157 ~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~ 235 (360)
.-..+|..++.+.+|..|.+.++.+...+ ....+..|++|+...+-.+ .+..=+++..+|+.|++..+....--.+.
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~lPef~ 225 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRFLPEFP 225 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhcccccCCCCC
Confidence 34566667777777777777776654332 1223556666666555331 11111334445555555544322222233
Q ss_pred cCCCccEEEecc
Q 018106 236 KASKLKIMEIRS 247 (360)
Q Consensus 236 ~l~~L~~L~l~~ 247 (360)
+|..|+.|++..
T Consensus 226 gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 226 GCSLLKELHVGE 237 (565)
T ss_pred ccHHHHHHHhcc
Confidence 344444444443
No 68
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.36 E-value=0.023 Score=52.28 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=33.9
Q ss_pred cccCCchHHHHHHhcCCC-hhhhhhhcccccchhhhhcc
Q 018106 19 RISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVS 56 (360)
Q Consensus 19 ~i~~LPd~iL~~I~s~L~-~~~~~~~~~vskrW~~l~~~ 56 (360)
..+.||+|+|..|.++|+ .-|++|.+.|||.||.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 467899999999999997 88999999999999986543
No 69
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.02 E-value=0.015 Score=53.04 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=30.1
Q ss_pred cccCcccccc-cCCccEEEEeeeeccCCC--CccCCCCCCEEEeee-EEe
Q 018106 158 VYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLER-VCL 203 (360)
Q Consensus 158 ~~~l~~~l~~-~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~-~~~ 203 (360)
-..+|...|+ .++|+.|+|+++.+..-. ...++++|.+|.+.+ +.+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3456665565 688999999998765322 445667777777666 444
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.63 E-value=0.0077 Score=57.16 Aligned_cols=100 Identities=20% Similarity=0.136 Sum_probs=59.4
Q ss_pred ccccCCccEEEEeeeeccCCCC-ccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccE
Q 018106 165 IFSANSVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKI 242 (360)
Q Consensus 165 l~~~~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~ 242 (360)
+....+|+.|++..+.+..... ...+++|++|.++++.+ +..++. .++.|+.|++.++.....-....+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhhc
Confidence 3445777778877777665443 55677888888888776 333333 34448888887776543333344567777
Q ss_pred EEecccc-chhhhH-hhcCCCccEEEEE
Q 018106 243 MEIRSFS-EEIEIV-EISVPSLQQLTLL 268 (360)
Q Consensus 243 L~l~~~~-~~~~~~-~~~~p~L~~L~l~ 268 (360)
+++.++. ..++.. ....++++.+.+.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 7777665 111111 2345566666665
No 71
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.47 E-value=0.013 Score=57.49 Aligned_cols=145 Identities=21% Similarity=0.197 Sum_probs=73.7
Q ss_pred cCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeec-----------CCC----
Q 018106 168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSN-----------CWG---- 228 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~-----------c~~---- 228 (360)
.++++.|++-...-..+. ....|..|++|.+.+|.+ .-.++..+- .+||+|.=.+ |.+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHH---HhhhhhhhhccHHHHHHHHHHhcccccc
Confidence 466777777665433332 455788999999999988 434444432 3455553221 211
Q ss_pred -CCc--ccc---------------ccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEE
Q 018106 229 -LKH--LCV---------------SKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLD 290 (360)
Q Consensus 229 -~~~--~~i---------------~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 290 (360)
..+ +.. .=+|.|++|+++.+...-......+|.|++|+++.+....-.......|. |..|.
T Consensus 160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeee
Confidence 000 000 01366667777665411111223667777777774443322222233333 66666
Q ss_pred eeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 291 LVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
|.++.++. +.. +.++.+|+.|+++.|
T Consensus 239 lrnN~l~t--L~g-ie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 239 LRNNALTT--LRG-IENLKSLYGLDLSYN 264 (1096)
T ss_pred ecccHHHh--hhh-HHhhhhhhccchhHh
Confidence 66555433 111 344556666666654
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=0.051 Score=45.19 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=50.7
Q ss_pred eccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCChhhhh----hcCCccceEeccccccccccc
Q 018106 279 EVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLKSAL 347 (360)
Q Consensus 279 ~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~----~~~~~L~~L~l~~c~~l~~~~ 347 (360)
.+.+++.++.|.+..+. +.+..+..+....|+|+.|+|++|+.+++-. ...++|+.|.+.+.+.+...+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANLE 193 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhchH
Confidence 35677888888887665 6667777777778999999999996655432 467888888888877665543
No 73
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.37 E-value=0.018 Score=54.95 Aligned_cols=134 Identities=20% Similarity=0.147 Sum_probs=77.7
Q ss_pred cCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc-cccccCC
Q 018106 160 TLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKAS 238 (360)
Q Consensus 160 ~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~-~~i~~l~ 238 (360)
.+|..+.....|++|+|+.+.+...+...++--|+.|.++++.++.-..+ +..-+.|..|+...|+.... -.+..+.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~--ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE--IGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc--cccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 34445566677777777777766554444444588888877776211111 22456777777777654321 1223456
Q ss_pred CccEEEeccccchhhhHh--hcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCc
Q 018106 239 KLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD 298 (360)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 298 (360)
+|+.|.+..+. +..+. +..-.|..|+++ |+.....++.+..+..|++|-|.++-+..
T Consensus 190 slr~l~vrRn~--l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 190 SLRDLNVRRNH--LEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHhhhh--hhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCCCCC
Confidence 77777776654 22221 112236777777 55555566667777777777777665544
No 74
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=91.23 E-value=0.012 Score=56.17 Aligned_cols=179 Identities=18% Similarity=0.085 Sum_probs=109.2
Q ss_pred CCccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCC-Ccc
Q 018106 155 ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL-KHL 232 (360)
Q Consensus 155 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~-~~~ 232 (360)
....-.+|.....+..|+.+.|+.+.+-.-. ....+..|+.|+|+.+.++.-... +..|| |+.|.+.++... ...
T Consensus 84 rNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lp-Lkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 84 RNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLP-LKVLIVSNNKLTSLPE 160 (722)
T ss_pred ccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCc-ceeEEEecCccccCCc
Confidence 4445566666667778888888875543221 344566777888888776322222 34466 888888876531 123
Q ss_pred ccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCC
Q 018106 233 CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (360)
Q Consensus 233 ~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 311 (360)
.+..+++|..|+++.|. ..+..-......|+.|.+..+.. ..++..+. .--|..|+++++.+.. +..-+..+..|
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~L 236 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHL 236 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHh-CCceeeeecccCceee--cchhhhhhhhh
Confidence 34456899999998886 22222223444566666653332 23333444 3457779998888754 34446788999
Q ss_pred CEEEecCcCCh---hhhhhc--CCccceEecccc
Q 018106 312 EDLFVTRCCLP---GKIKIS--SNQLKNLLFRSC 340 (360)
Q Consensus 312 ~~L~L~~c~~~---~~i~~~--~~~L~~L~l~~c 340 (360)
++|.|.+|+.- ..|... -+=+|+|++.-|
T Consensus 237 q~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 237 QVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 99999998432 333332 234788888877
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.94 E-value=0.26 Score=37.98 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=5.3
Q ss_pred cCCCCccEEEe
Q 018106 281 ARSPHLKKLDL 291 (360)
Q Consensus 281 ~~~~~L~~L~l 291 (360)
..+++|+.+.+
T Consensus 78 ~~~~~l~~i~~ 88 (129)
T PF13306_consen 78 SNCTNLKNIDI 88 (129)
T ss_dssp TT-TTECEEEE
T ss_pred ccccccccccc
Confidence 34555555555
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=90.11 E-value=0.12 Score=50.47 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=37.9
Q ss_pred hcccccccccCCchHHHHHHhcCCChhhhhhhcccccchhhh
Q 018106 12 ETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53 (360)
Q Consensus 12 ~~~~~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l 53 (360)
.+....|.++.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 345568999999999999999999999999999999999853
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.90 E-value=0.039 Score=52.37 Aligned_cols=125 Identities=22% Similarity=0.095 Sum_probs=79.7
Q ss_pred ccCCccEEEEeeeeccC-CCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEe
Q 018106 167 SANSVTNLRLVWCRLEQ-PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 245 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l 245 (360)
.+..++.+.+..+.+.. ......+.+|+.|.+.++.+. .+...+..+++|+.|++.++.......+..++.|+.|.+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 34555566666555543 223567889999999998762 222225678999999999987655556666778999999
Q ss_pred ccccchhhhHhh--cCCCccEEEEEeecCCCcce-eeccCCCCccEEEeecccc
Q 018106 246 RSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 246 ~~~~~~~~~~~~--~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 296 (360)
.++. +..+.- ..++|+.++++.+....-.. . ...+.+++.+.+.++.+
T Consensus 148 ~~N~--i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNL--ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCc--chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 8885 322221 26677777777443322111 1 35677777777766543
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.60 E-value=0.22 Score=26.59 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=14.5
Q ss_pred CCccceEeccccccccccc
Q 018106 329 SNQLKNLLFRSCKYLKSAL 347 (360)
Q Consensus 329 ~~~L~~L~l~~c~~l~~~~ 347 (360)
|++|+.|+|.+|.++++.+
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 5678888888888887754
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.28 E-value=0.35 Score=25.81 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=11.2
Q ss_pred CCCCCEEEeeeEE-eChHHHHHH
Q 018106 190 LCSLKKLTLERVC-LDEQMVQKL 211 (360)
Q Consensus 190 ~~~L~~L~L~~~~-~~~~~l~~l 211 (360)
||+|++|+|++|. +++.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 3455555555554 355555443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.71 E-value=0.36 Score=25.11 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=13.4
Q ss_pred CCCCCEEEeeeEEeChHHHHHH
Q 018106 190 LCSLKKLTLERVCLDEQMVQKL 211 (360)
Q Consensus 190 ~~~L~~L~L~~~~~~~~~l~~l 211 (360)
+++|++|+|+++.++++++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3677777777777776766654
No 81
>PF13013 F-box-like_2: F-box-like domain
Probab=84.58 E-value=0.5 Score=35.41 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=26.9
Q ss_pred cccCCchHHHHHHhcCCChhhhhhhccccc
Q 018106 19 RISELPTFIIHHLMSYLSAKEVARTSVLSK 48 (360)
Q Consensus 19 ~i~~LPd~iL~~I~s~L~~~~~~~~~~vsk 48 (360)
.+.+||+|++..||.+-...+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 488899999999999999999988887776
No 82
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=81.39 E-value=0.43 Score=41.31 Aligned_cols=51 Identities=10% Similarity=0.203 Sum_probs=40.1
Q ss_pred cccccCCchHHHHHHhcCCC-hhhhhhhcccccch------hhhhcccceEEeeCCCc
Q 018106 17 MDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKW------NQLYVSFPILDFDQNYF 67 (360)
Q Consensus 17 ~d~i~~LPd~iL~~I~s~L~-~~~~~~~~~vskrW------~~l~~~~~~l~~~~~~~ 67 (360)
+-.+.+||.+++..|+.+++ -+|++.+++|--.- +.+|+.+-.++|+...+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56789999999999999999 99999999882221 36788777767766553
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.49 E-value=1.7 Score=33.21 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=3.6
Q ss_pred cCCCCccEEEee
Q 018106 281 ARSPHLKKLDLV 292 (360)
Q Consensus 281 ~~~~~L~~L~l~ 292 (360)
.++ +|+.+.+.
T Consensus 101 ~~~-~l~~i~~~ 111 (129)
T PF13306_consen 101 SNC-NLKEINIP 111 (129)
T ss_dssp TT--T--EEE-T
T ss_pred cCC-CceEEEEC
Confidence 444 55555554
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.05 E-value=2.5 Score=40.72 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=43.2
Q ss_pred cCCCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCCC--CCccccc--cCCCccEEEecccc---------chhh
Q 018106 188 IMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG--LKHLCVS--KASKLKIMEIRSFS---------EEIE 253 (360)
Q Consensus 188 ~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~--~~~~~i~--~l~~L~~L~l~~~~---------~~~~ 253 (360)
..+|.+.+++|+++++ .-+.+..+....|+|..|+|.++.. -....+. ....|++|.+.++. ..+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3466666677766666 5556666666677777777766521 1112221 12456666666554 2233
Q ss_pred hHhhcCCCccEEE
Q 018106 254 IVEISVPSLQQLT 266 (360)
Q Consensus 254 ~~~~~~p~L~~L~ 266 (360)
.+...+|+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 3334566666655
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=75.83 E-value=2 Score=20.33 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=4.4
Q ss_pred ccceEeccccc
Q 018106 331 QLKNLLFRSCK 341 (360)
Q Consensus 331 ~L~~L~l~~c~ 341 (360)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34555555444
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.22 E-value=5.8 Score=21.48 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=16.0
Q ss_pred CCccEEEeeccccCcHHHHHHhc
Q 018106 284 PHLKKLDLVSVYFADNEFNHLIS 306 (360)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~ 306 (360)
++|+.|+|+++.+.+.....+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 56788888888887766555443
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=64.71 E-value=1.1 Score=35.12 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCccEEEecccc--chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 238 SKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 238 ~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
..|+..+++++. .-...+.+..|-.+.|.+..+.. ...+..+..+|.|+.|.+..+.+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCcc
Confidence 455555665553 11123344444555555552222 12233345555666665555444
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=63.96 E-value=0.91 Score=35.67 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=34.7
Q ss_pred ccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCC
Q 018106 167 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG 228 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~ 228 (360)
....|+..+|+++.+..-+ ....||-++.|++.++.+++-..+ +...|.|+.|++.++..
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence 3455666666666654332 334566677777777665433333 45567777777766644
No 89
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=59.42 E-value=11 Score=27.50 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.5
Q ss_pred ccccCCchHHHHHHhcCCChhhhhh
Q 018106 18 DRISELPTFIIHHLMSYLSAKEVAR 42 (360)
Q Consensus 18 d~i~~LPd~iL~~I~s~L~~~~~~~ 42 (360)
..++.||.|+-.+|+++|+-.|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6789999999999999999998754
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=58.15 E-value=0.23 Score=47.77 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=92.2
Q ss_pred ccccccCCccEEEEeeeeccCCC---C--ccCC--CCCCEEEeeeEEeChHH---HHHHHhcCCcccEEEeecCCCCCc-
Q 018106 163 QAIFSANSVTNLRLVWCRLEQPF---D--SIML--CSLKKLTLERVCLDEQM---VQKLASECPLLEDLCFSNCWGLKH- 231 (360)
Q Consensus 163 ~~l~~~~~L~~L~L~~~~~~~~~---~--~~~~--~~L~~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~c~~~~~- 231 (360)
..+...++|+.|+++++.+.+.+ . .... +.|+.|.+..|.++.++ +...+..++.|+.+++..|.....
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 34445788999999998877544 1 1111 34667777777774333 334445588888888888765321
Q ss_pred -ccc----c----cCCCccEEEecccc---chhhhHh---hcCCC-ccEEEEEeecCCCcc----eeeccCC-CCccEEE
Q 018106 232 -LCV----S----KASKLKIMEIRSFS---EEIEIVE---ISVPS-LQQLTLLFYGARRPR----VVEVARS-PHLKKLD 290 (360)
Q Consensus 232 -~~i----~----~l~~L~~L~l~~~~---~~~~~~~---~~~p~-L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~ 290 (360)
..+ . ...+++.|.+..|. .....+. -..+. +..|++..+...+.. ...+..+ +.+++++
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 100 1 13478888888776 1111121 12333 455666633332221 1112333 6778888
Q ss_pred eeccccCc---HHHHHHhcCCCCCCEEEecCcC
Q 018106 291 LVSVYFAD---NEFNHLISKFPSLEDLFVTRCC 320 (360)
Q Consensus 291 l~~~~~~~---~~~~~~~~~~~~L~~L~L~~c~ 320 (360)
+..+.+++ ..+.+.+..++.+++|.++.++
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 88877765 4456667777888888888873
No 91
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=56.60 E-value=5.3 Score=20.14 Aligned_cols=8 Identities=38% Similarity=0.276 Sum_probs=3.1
Q ss_pred CCEEEecC
Q 018106 311 LEDLFVTR 318 (360)
Q Consensus 311 L~~L~L~~ 318 (360)
|++|+|++
T Consensus 2 L~~Ldls~ 9 (22)
T PF00560_consen 2 LEYLDLSG 9 (22)
T ss_dssp ESEEEETS
T ss_pred ccEEECCC
Confidence 33344443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.89 E-value=12 Score=36.26 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=40.0
Q ss_pred CCccEEEecccc----chhhhHhhcCCCccEEEEEeecCCC---cceeeccCCCCccEEEeeccccCc------HHHHHH
Q 018106 238 SKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARR---PRVVEVARSPHLKKLDLVSVYFAD------NEFNHL 304 (360)
Q Consensus 238 ~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~ 304 (360)
|.+.++.++++. +.+..+...+|+|+.|.++.+.... .....+ +...|++|-+.|+.+.. +.+..+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 445555544443 3445556677777777777331110 111112 23566777777765433 334445
Q ss_pred hcCCCCCCEEE
Q 018106 305 ISKFPSLEDLF 315 (360)
Q Consensus 305 ~~~~~~L~~L~ 315 (360)
-..||.|..|+
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 55677776664
No 93
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=36.74 E-value=11 Score=33.94 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=34.0
Q ss_pred ccCCchHHHHHHhcCCChhhhhhhcccccchhhhhcccce
Q 018106 20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPI 59 (360)
Q Consensus 20 i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~~~~ 59 (360)
+..+|++++..|++++..++++++|.|++|-..+..-.|.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~l 47 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPL 47 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcccc
Confidence 4568999999999999999999999999999876544443
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=32.23 E-value=35 Score=17.67 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=5.6
Q ss_pred CCccEEEeeccc
Q 018106 284 PHLKKLDLVSVY 295 (360)
Q Consensus 284 ~~L~~L~l~~~~ 295 (360)
++|+.|++.++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 344555554443
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=32.23 E-value=35 Score=17.67 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=5.6
Q ss_pred CCccEEEeeccc
Q 018106 284 PHLKKLDLVSVY 295 (360)
Q Consensus 284 ~~L~~L~l~~~~ 295 (360)
++|+.|++.++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 344555554443
No 96
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=22.11 E-value=64 Score=17.28 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=11.1
Q ss_pred HHHhcCCcccEEEeec
Q 018106 210 KLASECPLLEDLCFSN 225 (360)
Q Consensus 210 ~l~~~cp~Le~L~l~~ 225 (360)
.++..+|+|+.|+...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 4567788888887543
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=21.45 E-value=71 Score=17.00 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=5.6
Q ss_pred CccEEEeecccc
Q 018106 285 HLKKLDLVSVYF 296 (360)
Q Consensus 285 ~L~~L~l~~~~~ 296 (360)
+|+.|+++.+.+
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 445555544433
Done!