Query 018106
Match_columns 360
No_of_seqs 162 out of 2182
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 10:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 4E-24 1.4E-28 195.3 9.2 280 16-339 5-302 (336)
2 2p1m_B Transport inhibitor res 99.9 5.4E-23 1.9E-27 202.0 11.2 38 16-53 2-40 (594)
3 3ogk_B Coronatine-insensitive 99.9 1.7E-22 5.7E-27 198.5 13.1 41 17-57 6-51 (592)
4 4fcg_A Uncharacterized protein 99.5 4.3E-14 1.5E-18 128.4 12.9 198 140-345 79-292 (328)
5 2ast_B S-phase kinase-associat 99.5 1.2E-13 4.1E-18 125.6 12.7 202 133-340 61-282 (336)
6 3ogk_B Coronatine-insensitive 99.4 5.8E-13 2E-17 130.4 9.1 89 257-346 433-528 (592)
7 1h6u_A Internalin H; cell adhe 99.3 9.5E-12 3.3E-16 111.8 13.6 186 141-341 40-228 (308)
8 4fmz_A Internalin; leucine ric 99.3 1.1E-11 3.9E-16 113.1 14.3 166 167-341 153-322 (347)
9 4fmz_A Internalin; leucine ric 99.3 1.4E-11 4.7E-16 112.5 14.3 170 165-341 173-344 (347)
10 4fcg_A Uncharacterized protein 99.3 1.3E-12 4.4E-17 118.6 7.3 215 110-338 80-309 (328)
11 2p1m_B Transport inhibitor res 99.3 2.2E-12 7.5E-17 126.3 7.7 60 283-342 455-518 (594)
12 1ogq_A PGIP-2, polygalacturona 99.3 7.5E-12 2.6E-16 112.8 9.8 195 142-342 76-280 (313)
13 1h6u_A Internalin H; cell adhe 99.3 2.8E-11 9.6E-16 108.7 11.5 165 167-341 39-206 (308)
14 2ca6_A RAN GTPase-activating p 99.3 1.3E-11 4.3E-16 114.6 9.4 177 166-342 91-315 (386)
15 1ozn_A Reticulon 4 receptor; N 99.3 9.9E-12 3.4E-16 110.3 8.1 173 166-340 53-235 (285)
16 3rfs_A Internalin B, repeat mo 99.2 1.3E-11 4.3E-16 109.0 8.4 187 141-338 40-230 (272)
17 1h6t_A Internalin B; cell adhe 99.2 2.7E-11 9.3E-16 107.9 10.4 165 141-319 45-210 (291)
18 1o6v_A Internalin A; bacterial 99.2 8.3E-11 2.8E-15 111.9 13.9 187 142-341 177-386 (466)
19 2z80_A TOLL-like receptor 2, v 99.2 1.4E-11 4.8E-16 112.9 8.2 174 168-342 123-313 (353)
20 3t6q_A CD180 antigen; protein- 99.2 1.2E-11 4.2E-16 121.4 7.6 67 160-226 292-360 (606)
21 1o6v_A Internalin A; bacterial 99.2 1.2E-10 4.1E-15 110.8 14.1 184 142-340 156-341 (466)
22 1ogq_A PGIP-2, polygalacturona 99.2 3.3E-11 1.1E-15 108.5 9.1 195 143-342 51-256 (313)
23 3zyi_A Leucine-rich repeat-con 99.2 2.2E-11 7.4E-16 115.4 8.3 193 142-340 99-300 (452)
24 2z66_A Variable lymphocyte rec 99.2 9.8E-12 3.4E-16 111.5 4.8 197 142-341 52-259 (306)
25 3rfs_A Internalin B, repeat mo 99.2 1.8E-11 6E-16 108.0 6.3 171 167-341 39-216 (272)
26 1ozn_A Reticulon 4 receptor; N 99.2 2.9E-11 9.8E-16 107.3 7.6 172 168-341 31-212 (285)
27 3zyj_A Leucine-rich repeat-con 99.2 3.2E-11 1.1E-15 113.9 8.3 193 142-340 88-289 (440)
28 4ezg_A Putative uncharacterize 99.2 1.1E-10 3.8E-15 97.7 10.7 146 167-319 42-191 (197)
29 2o6q_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 104.7 9.0 172 142-319 37-215 (270)
30 3rgz_A Protein brassinosteroid 99.2 2.4E-11 8.2E-16 122.7 7.4 196 142-341 100-329 (768)
31 1z7x_W Ribonuclease inhibitor; 99.2 1.1E-11 3.8E-16 117.5 4.5 203 139-345 25-270 (461)
32 1m9s_A Internalin B; cell inva 99.2 6.4E-11 2.2E-15 115.9 9.8 165 141-319 42-207 (605)
33 1xku_A Decorin; proteoglycan, 99.2 1.1E-10 3.8E-15 105.8 10.7 191 142-340 76-273 (330)
34 1z7x_W Ribonuclease inhibitor; 99.2 8E-11 2.7E-15 111.6 10.0 104 238-341 199-324 (461)
35 2z66_A Variable lymphocyte rec 99.2 1.4E-11 4.8E-16 110.5 4.5 194 142-342 28-235 (306)
36 2z80_A TOLL-like receptor 2, v 99.2 1.5E-10 5.2E-15 105.9 11.4 172 142-319 52-232 (353)
37 2id5_A Lingo-1, leucine rich r 99.2 1E-10 3.5E-15 111.5 10.7 104 142-249 104-211 (477)
38 3v47_A TOLL-like receptor 5B a 99.1 1.8E-10 6.1E-15 109.0 11.7 105 236-341 297-406 (455)
39 4glp_A Monocyte differentiatio 99.1 4.4E-11 1.5E-15 107.5 7.2 203 131-341 80-305 (310)
40 2z63_A TOLL-like receptor 4, v 99.1 2.6E-11 8.8E-16 118.1 5.8 152 168-319 324-480 (570)
41 3vq2_A TLR4, TOLL-like recepto 99.1 2.7E-11 9.2E-16 119.0 5.9 174 167-341 326-532 (606)
42 3rgz_A Protein brassinosteroid 99.1 1.1E-10 3.8E-15 117.9 9.7 153 166-319 197-353 (768)
43 2ca6_A RAN GTPase-activating p 99.1 1E-10 3.5E-15 108.4 8.7 199 142-342 32-286 (386)
44 2id5_A Lingo-1, leucine rich r 99.1 2.1E-10 7.3E-15 109.3 11.1 82 259-341 199-283 (477)
45 3bz5_A Internalin-J, INLJ; leu 99.1 1.9E-10 6.6E-15 109.0 10.7 180 142-341 64-244 (457)
46 1h6t_A Internalin B; cell adhe 99.1 3.9E-10 1.3E-14 100.4 12.1 165 167-341 44-211 (291)
47 3v47_A TOLL-like receptor 5B a 99.1 1.2E-10 4E-15 110.3 8.6 84 142-228 79-166 (455)
48 3oja_A Leucine-rich immune mol 99.1 1.1E-10 3.6E-15 111.7 8.3 167 165-342 76-249 (487)
49 3vq2_A TLR4, TOLL-like recepto 99.1 1.5E-10 5.1E-15 113.7 8.9 150 165-319 281-434 (606)
50 3o6n_A APL1; leucine-rich repe 99.1 3.4E-10 1.2E-14 105.0 10.7 81 258-340 246-328 (390)
51 3zyi_A Leucine-rich repeat-con 99.1 1.8E-10 6.3E-15 109.0 8.6 192 142-341 75-277 (452)
52 3t6q_A CD180 antigen; protein- 99.1 1.7E-10 6E-15 113.2 8.6 131 165-296 274-412 (606)
53 3o53_A Protein LRIM1, AGAP0063 99.1 2E-10 7E-15 103.5 8.2 186 142-343 58-250 (317)
54 3oja_B Anopheles plasmodium-re 99.1 2.5E-10 8.5E-15 112.0 9.4 81 258-340 252-334 (597)
55 1m9s_A Internalin B; cell inva 99.1 2.6E-10 8.9E-15 111.6 9.4 163 168-340 42-207 (605)
56 3zyj_A Leucine-rich repeat-con 99.1 1.7E-10 5.7E-15 108.9 7.8 192 142-341 64-266 (440)
57 3bz5_A Internalin-J, INLJ; leu 99.1 6.3E-10 2.2E-14 105.5 11.0 158 142-319 85-243 (457)
58 1wwl_A Monocyte differentiatio 99.1 6.4E-11 2.2E-15 106.6 3.9 173 167-340 93-284 (312)
59 4ezg_A Putative uncharacterize 99.1 3.2E-10 1.1E-14 94.8 7.9 147 187-340 40-191 (197)
60 2o6q_A Variable lymphocyte rec 99.0 4.2E-10 1.4E-14 99.0 8.3 171 169-341 37-216 (270)
61 1wwl_A Monocyte differentiatio 99.0 1.5E-10 5.1E-15 104.2 5.3 192 140-340 93-306 (312)
62 1p9a_G Platelet glycoprotein I 99.0 2.8E-10 9.7E-15 101.2 6.7 188 142-340 10-205 (290)
63 1xku_A Decorin; proteoglycan, 99.0 5.5E-10 1.9E-14 101.2 8.5 191 142-341 100-304 (330)
64 2z63_A TOLL-like receptor 4, v 99.0 5.8E-10 2E-14 108.5 9.1 83 258-341 394-481 (570)
65 2z62_A TOLL-like receptor 4, v 99.0 2.3E-10 8E-15 100.9 5.7 171 165-338 48-232 (276)
66 2z81_A CD282 antigen, TOLL-lik 99.0 1.6E-09 5.4E-14 105.0 11.5 173 142-319 26-206 (549)
67 3o53_A Protein LRIM1, AGAP0063 99.0 9.9E-10 3.4E-14 99.0 9.1 166 169-340 99-272 (317)
68 3oja_A Leucine-rich immune mol 99.0 1.3E-10 4.4E-15 111.2 3.2 187 142-341 34-225 (487)
69 3goz_A Leucine-rich repeat-con 99.0 2.8E-10 9.5E-15 104.6 5.3 196 143-341 52-295 (362)
70 3oja_B Anopheles plasmodium-re 99.0 1.2E-09 4.2E-14 107.1 10.1 105 234-341 250-356 (597)
71 3o6n_A APL1; leucine-rich repe 99.0 2.1E-09 7.3E-14 99.6 11.2 60 280-340 244-305 (390)
72 1ziw_A TOLL-like receptor 3; i 99.0 7.6E-10 2.6E-14 110.2 8.5 127 212-341 476-620 (680)
73 3m19_A Variable lymphocyte rec 99.0 6.5E-10 2.2E-14 96.7 6.7 157 159-319 27-189 (251)
74 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 3.5E-10 1.2E-14 73.0 3.2 40 16-55 5-44 (53)
75 2ft3_A Biglycan; proteoglycan, 98.9 5.5E-10 1.9E-14 101.3 5.6 82 142-228 78-159 (332)
76 3goz_A Leucine-rich repeat-con 98.9 2.7E-09 9.1E-14 98.0 10.2 197 142-341 22-264 (362)
77 2xwt_C Thyrotropin receptor; s 98.9 7.3E-10 2.5E-14 95.6 5.9 173 165-341 51-237 (239)
78 3m19_A Variable lymphocyte rec 98.9 9.6E-10 3.3E-14 95.6 6.7 131 165-297 55-192 (251)
79 1p9a_G Platelet glycoprotein I 98.9 7.7E-10 2.6E-14 98.4 6.0 171 142-319 31-205 (290)
80 4eco_A Uncharacterized protein 98.9 2E-09 6.9E-14 106.3 9.6 147 190-341 432-598 (636)
81 2z7x_B TOLL-like receptor 1, v 98.9 1.6E-09 5.5E-14 104.3 8.5 15 134-148 239-253 (520)
82 4eco_A Uncharacterized protein 98.9 8.2E-10 2.8E-14 109.1 6.4 177 161-341 239-468 (636)
83 2z81_A CD282 antigen, TOLL-lik 98.9 7.6E-10 2.6E-14 107.2 5.9 179 159-341 18-207 (549)
84 1xeu_A Internalin C; cellular 98.9 1.6E-09 5.4E-14 95.0 7.4 143 167-319 39-182 (263)
85 2ell_A Acidic leucine-rich nuc 98.9 1E-09 3.5E-14 89.2 5.4 61 259-319 94-157 (168)
86 2z7x_B TOLL-like receptor 1, v 98.9 6.6E-09 2.3E-13 100.0 12.0 170 142-319 302-478 (520)
87 1xeu_A Internalin C; cellular 98.9 4.6E-10 1.6E-14 98.4 3.1 163 169-341 19-183 (263)
88 2xwt_C Thyrotropin receptor; s 98.9 7.4E-10 2.5E-14 95.5 4.3 168 169-340 31-215 (239)
89 2z62_A TOLL-like receptor 4, v 98.9 2.4E-09 8.2E-14 94.4 7.5 180 158-341 19-211 (276)
90 4ecn_A Leucine-rich repeat pro 98.9 1.9E-09 6.4E-14 109.5 7.6 133 161-296 481-631 (876)
91 3j0a_A TOLL-like receptor 5; m 98.9 3.5E-09 1.2E-13 108.0 9.3 38 166-203 120-160 (844)
92 4ecn_A Leucine-rich repeat pro 98.9 6E-09 2.1E-13 105.8 10.8 146 192-342 674-839 (876)
93 2je0_A Acidic leucine-rich nuc 98.9 5.8E-10 2E-14 88.7 2.7 16 281-296 110-125 (149)
94 1ziw_A TOLL-like receptor 3; i 98.9 7.5E-09 2.6E-13 103.0 11.1 13 329-341 221-233 (680)
95 2ra8_A Uncharacterized protein 98.9 6.4E-09 2.2E-13 95.2 9.7 137 207-345 163-321 (362)
96 3j0a_A TOLL-like receptor 5; m 98.9 3.1E-09 1.1E-13 108.4 7.9 57 284-341 266-325 (844)
97 2ft3_A Biglycan; proteoglycan, 98.8 1.7E-09 5.8E-14 98.0 4.9 168 142-319 102-274 (332)
98 4glp_A Monocyte differentiatio 98.8 1.8E-09 6.1E-14 96.9 4.9 172 168-341 90-283 (310)
99 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 4E-08 1.4E-12 95.6 14.5 38 142-181 121-158 (562)
100 2o6s_A Variable lymphocyte rec 98.8 4.1E-09 1.4E-13 88.8 4.8 143 168-319 27-175 (208)
101 2ra8_A Uncharacterized protein 98.8 2.5E-07 8.7E-12 84.5 16.9 197 94-320 92-318 (362)
102 2ell_A Acidic leucine-rich nuc 98.8 2.8E-08 9.5E-13 80.6 9.0 124 142-268 24-155 (168)
103 1jl5_A Outer protein YOPM; leu 98.8 4.2E-08 1.4E-12 92.8 11.4 31 284-319 257-287 (454)
104 3e4g_A ATP synthase subunit S, 98.7 1.6E-08 5.5E-13 82.0 6.9 91 159-249 51-150 (176)
105 3g06_A SSPH2 (leucine-rich rep 98.7 7.9E-08 2.7E-12 94.2 13.0 92 142-249 61-152 (622)
106 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 3.6E-08 1.2E-12 95.8 9.9 170 142-319 331-507 (562)
107 2je0_A Acidic leucine-rich nuc 98.7 2.7E-08 9.1E-13 79.0 7.3 123 142-267 17-147 (149)
108 3cvr_A Invasion plasmid antige 98.7 2.9E-08 9.8E-13 96.3 8.3 174 142-341 59-241 (571)
109 2o6s_A Variable lymphocyte rec 98.7 7.5E-09 2.6E-13 87.1 3.0 144 189-338 26-173 (208)
110 3un9_A NLR family member X1; l 98.6 7.2E-09 2.5E-13 95.4 2.2 108 139-249 69-194 (372)
111 3g06_A SSPH2 (leucine-rich rep 98.6 1.7E-07 5.8E-12 91.9 11.5 115 214-341 179-295 (622)
112 3e6j_A Variable lymphocyte rec 98.6 9.8E-08 3.3E-12 81.6 7.8 125 169-319 40-169 (229)
113 2v70_A SLIT-2, SLIT homolog 2 98.6 3.4E-08 1.1E-12 84.0 4.8 80 169-249 32-116 (220)
114 1jl5_A Outer protein YOPM; leu 98.6 3.9E-07 1.3E-11 86.2 12.0 157 169-341 111-268 (454)
115 1a9n_A U2A', U2A'; complex (nu 98.5 6.9E-08 2.4E-12 78.9 4.9 131 167-320 17-151 (176)
116 1ds9_A Outer arm dynein; leuci 98.5 2.9E-08 9.7E-13 82.9 2.6 123 188-336 45-180 (198)
117 2v9t_B SLIT homolog 2 protein 98.5 1.5E-07 5E-12 80.0 6.6 79 169-249 32-115 (220)
118 1a9n_A U2A', U2A'; complex (nu 98.5 6.2E-08 2.1E-12 79.2 4.0 134 188-345 16-155 (176)
119 1ds9_A Outer arm dynein; leuci 98.5 1.8E-08 6E-13 84.2 0.6 135 158-316 37-181 (198)
120 3un9_A NLR family member X1; l 98.5 1.1E-07 3.7E-12 87.5 5.9 153 168-320 71-250 (372)
121 2v9t_B SLIT homolog 2 protein 98.5 1.2E-07 3.9E-12 80.7 5.2 145 172-319 14-162 (220)
122 4g8a_A TOLL-like receptor 4; l 98.5 1.2E-07 4E-12 93.1 5.6 150 188-339 417-576 (635)
123 3e4g_A ATP synthase subunit S, 98.4 2.5E-07 8.5E-12 75.0 6.2 87 261-347 62-156 (176)
124 2xot_A Amphoterin-induced prot 98.4 2.2E-07 7.6E-12 85.1 5.5 148 169-319 39-199 (361)
125 4ay9_X Follicle-stimulating ho 98.4 1.4E-07 4.9E-12 86.0 4.1 201 142-351 30-244 (350)
126 2v70_A SLIT-2, SLIT homolog 2 98.4 2.9E-07 9.9E-12 78.2 5.8 146 172-319 14-163 (220)
127 2xot_A Amphoterin-induced prot 98.4 2.4E-07 8.2E-12 84.9 5.6 164 172-339 21-198 (361)
128 3e6j_A Variable lymphocyte rec 98.4 7.3E-07 2.5E-11 76.1 7.5 143 172-341 22-170 (229)
129 4g8a_A TOLL-like receptor 4; l 98.4 3.6E-07 1.2E-11 89.7 6.0 159 157-319 42-211 (635)
130 3cvr_A Invasion plasmid antige 98.3 7.1E-07 2.4E-11 86.5 6.5 159 142-325 80-246 (571)
131 2e31_A FBS1, F-box only protei 98.1 9.3E-07 3.2E-11 77.5 3.1 37 18-54 49-86 (297)
132 1dce_A Protein (RAB geranylger 98.1 2.1E-06 7.2E-11 83.3 5.4 101 191-319 441-543 (567)
133 1dce_A Protein (RAB geranylger 98.1 6.9E-06 2.3E-10 79.7 8.7 170 166-341 346-544 (567)
134 3l2o_B F-box only protein 4; s 98.1 7.1E-07 2.4E-11 77.4 1.5 33 20-52 5-37 (312)
135 1w8a_A SLIT protein; signaling 98.0 2.8E-06 9.7E-11 70.3 3.8 38 260-297 102-139 (192)
136 2o6r_A Variable lymphocyte rec 98.0 8.6E-06 2.9E-10 66.3 5.5 56 191-248 28-86 (177)
137 3v7d_B Cell division control p 98.0 1.9E-06 6.5E-11 81.0 1.7 39 16-54 11-49 (464)
138 2wfh_A SLIT homolog 2 protein 97.9 1.5E-05 5.1E-10 66.0 5.8 103 191-295 31-137 (193)
139 2o6r_A Variable lymphocyte rec 97.9 2.4E-05 8.2E-10 63.6 7.0 124 192-320 8-135 (177)
140 4b8c_D Glucose-repressible alc 97.9 5.4E-06 1.8E-10 82.9 3.1 108 187-298 220-330 (727)
141 2wfh_A SLIT homolog 2 protein 97.8 3.8E-05 1.3E-09 63.5 7.6 120 194-319 13-136 (193)
142 1io0_A Tropomodulin; LRR prote 97.8 3.8E-05 1.3E-09 63.1 7.6 40 280-319 117-161 (185)
143 1w8a_A SLIT protein; signaling 97.8 2.2E-05 7.4E-10 64.9 5.9 124 172-319 11-136 (192)
144 3sb4_A Hypothetical leucine ri 97.8 1.7E-05 5.7E-10 71.5 4.8 79 258-338 224-305 (329)
145 4ay9_X Follicle-stimulating ho 97.8 3.4E-05 1.2E-09 70.1 6.5 178 159-340 22-212 (350)
146 2ovr_B FBW7, F-BOX/WD repeat p 97.7 1.6E-05 5.6E-10 74.3 3.9 40 14-53 13-52 (445)
147 3sb4_A Hypothetical leucine ri 97.7 3.5E-05 1.2E-09 69.3 5.8 97 237-336 225-327 (329)
148 1p22_A F-BOX/WD-repeat protein 97.7 7.4E-06 2.5E-10 76.5 1.0 37 16-52 7-47 (435)
149 4b8c_D Glucose-repressible alc 97.7 1.2E-05 4.2E-10 80.4 2.3 146 169-321 173-328 (727)
150 1io0_A Tropomodulin; LRR prote 97.4 0.00016 5.4E-09 59.3 4.7 119 205-341 25-162 (185)
151 4fdw_A Leucine rich hypothetic 97.4 0.00029 9.9E-09 65.2 7.1 80 258-340 269-355 (401)
152 3g39_A Variable lymphocyte rec 97.2 0.00026 9E-09 57.0 4.7 80 169-249 30-113 (170)
153 2r9u_A Variable lymphocyte rec 97.2 0.00029 9.9E-09 57.1 4.7 80 169-249 33-116 (174)
154 3g39_A Variable lymphocyte rec 97.1 0.00055 1.9E-08 55.1 5.4 38 281-319 75-112 (170)
155 2r9u_A Variable lymphocyte rec 96.9 0.00067 2.3E-08 54.9 4.3 99 219-319 15-115 (174)
156 4fdw_A Leucine rich hypothetic 96.9 0.00073 2.5E-08 62.5 4.6 162 169-337 157-330 (401)
157 3rw6_A Nuclear RNA export fact 96.3 0.0025 8.6E-08 55.2 3.9 80 257-337 167-258 (267)
158 3rw6_A Nuclear RNA export fact 96.3 0.0028 9.7E-08 54.9 4.0 38 190-227 169-207 (267)
159 2ifg_A High affinity nerve gro 96.0 0.0049 1.7E-07 55.4 4.4 88 158-249 21-114 (347)
160 2ifg_A High affinity nerve gro 95.7 0.014 4.7E-07 52.4 6.0 61 187-249 27-91 (347)
161 1pgv_A TMD-1, tropomodulin TMD 95.1 0.059 2E-06 44.2 7.3 44 206-249 31-81 (197)
162 4fs7_A Uncharacterized protein 93.3 0.069 2.4E-06 48.8 4.6 76 258-338 295-374 (394)
163 4gt6_A Cell surface protein; l 93.2 0.16 5.3E-06 46.5 6.7 14 305-318 353-366 (394)
164 4fs7_A Uncharacterized protein 92.8 0.077 2.6E-06 48.5 4.1 55 280-338 293-351 (394)
165 1pgv_A TMD-1, tropomodulin TMD 92.7 0.49 1.7E-05 38.6 8.3 38 191-228 41-82 (197)
166 4gt6_A Cell surface protein; l 90.7 0.2 6.9E-06 45.7 4.4 122 188-318 262-387 (394)
167 4h09_A Hypothetical leucine ri 86.3 0.87 3E-05 41.0 5.4 99 237-337 239-340 (379)
168 4h09_A Hypothetical leucine ri 83.2 1.1 3.7E-05 40.4 4.5 103 212-318 236-342 (379)
169 3rfe_A Platelet glycoprotein I 52.2 5.6 0.00019 29.7 1.5 34 285-319 32-65 (130)
170 3rfe_A Platelet glycoprotein I 50.1 7 0.00024 29.1 1.8 35 169-203 31-67 (130)
171 2lz0_A Uncharacterized protein 22.8 53 0.0018 23.0 2.6 10 214-223 18-27 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=4e-24 Score=195.34 Aligned_cols=280 Identities=20% Similarity=0.260 Sum_probs=179.5
Q ss_pred ccccccCCchHHHHHHhcCCChhhhhhhcccccchhhhhcc---cceEEeeCCCcCCCCCCCcccccccccccchhhHhH
Q 018106 16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS---FPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV 92 (360)
Q Consensus 16 ~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (360)
+...++.||||++.+||+||+.+|+++++.|||+|+++... +..+++....+.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------ 60 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------ 60 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence 35678999999999999999999999999999999998531 223444433321
Q ss_pred HHHHHHHHHHHhhhhcCCcccceEEEEeecCCCCCChhhHHHHHHHHHHcCceEEEeecccCCCccccCcccccccCCcc
Q 018106 93 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVT 172 (360)
Q Consensus 93 ~~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~ 172 (360)
...+...+ ...++.+.+..... ...... ....+++++|+ +..+......++..+..+++|+
T Consensus 61 ---~~~~~~~~------~~~l~~L~l~~n~l--~~~~~~------~~~~~~L~~L~--L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 61 ---PDVTGRLL------SQGVIAFRCPRSFM--DQPLAE------HFSPFRVQHMD--LSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp ---HHHHHHHH------HTTCSEEECTTCEE--CSCCCS------CCCCBCCCEEE--CTTCEECHHHHHHHHTTBCCCS
T ss_pred ---HHHHHhhh------hccceEEEcCCccc--cccchh------hccCCCCCEEE--ccCCCcCHHHHHHHHhhCCCCC
Confidence 11122221 12344444321110 000000 01126888888 6544332233555666789999
Q ss_pred EEEEeeeeccCCC--CccCCCCCCEEEeeeE-EeChHHHHHHHhcCCcccEEEeecCCCCCccc----cccCC-CccEEE
Q 018106 173 NLRLVWCRLEQPF--DSIMLCSLKKLTLERV-CLDEQMVQKLASECPLLEDLCFSNCWGLKHLC----VSKAS-KLKIME 244 (360)
Q Consensus 173 ~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~----i~~l~-~L~~L~ 244 (360)
+|++.+|.+.... ....+++|++|.++++ .+++..+..++..||+|++|++.+|..+.... +..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999988765322 3345889999999998 56777788888889999999999884454321 34578 999999
Q ss_pred ecccc-----chhhhHhhcCCCccEEEEEeec-CCCcceeeccCCCCccEEEeecc-ccCcHHHHHHhcCCCCCCEEEec
Q 018106 245 IRSFS-----EEIEIVEISVPSLQQLTLLFYG-ARRPRVVEVARSPHLKKLDLVSV-YFADNEFNHLISKFPSLEDLFVT 317 (360)
Q Consensus 245 l~~~~-----~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~L~ 317 (360)
+.+|. ..+......+|+|++|+++.+. ........+..+++|+.|++.++ .+.+..+ ..+..+++|++|+++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVF 280 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEecc
Confidence 98883 1233344578899999998665 33334445677899999999877 4555544 235678999999999
Q ss_pred CcCChhhhhhcCCccceEeccc
Q 018106 318 RCCLPGKIKISSNQLKNLLFRS 339 (360)
Q Consensus 318 ~c~~~~~i~~~~~~L~~L~l~~ 339 (360)
+|...+.+.....+|+.|++.+
T Consensus 281 ~~i~~~~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 281 GIVPDGTLQLLKEALPHLQINC 302 (336)
T ss_dssp TSSCTTCHHHHHHHSTTSEESC
T ss_pred CccCHHHHHHHHhhCcceEEec
Confidence 8822222222223466666643
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=5.4e-23 Score=201.98 Aligned_cols=38 Identities=18% Similarity=0.476 Sum_probs=29.4
Q ss_pred ccccccCCchHHHHHHhcCCC-hhhhhhhcccccchhhh
Q 018106 16 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQL 53 (360)
Q Consensus 16 ~~d~i~~LPd~iL~~I~s~L~-~~~~~~~~~vskrW~~l 53 (360)
+.|+++.||||||.+||+||| .+|++++++|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 358999999999999999999 99999999999999987
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.7e-22 Score=198.46 Aligned_cols=41 Identities=17% Similarity=0.421 Sum_probs=33.2
Q ss_pred ccccc----CCchHHHHHHhcCC-Chhhhhhhcccccchhhhhccc
Q 018106 17 MDRIS----ELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSF 57 (360)
Q Consensus 17 ~d~i~----~LPd~iL~~I~s~L-~~~~~~~~~~vskrW~~l~~~~ 57 (360)
.|+++ .||||++.+||+|| +.+|++++++|||||++++...
T Consensus 6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~ 51 (592)
T 3ogk_B 6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSET 51 (592)
T ss_dssp ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhcc
Confidence 45565 89999999999999 8999999999999999986443
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.54 E-value=4.3e-14 Score=128.41 Aligned_cols=198 Identities=17% Similarity=0.185 Sum_probs=125.7
Q ss_pred HHcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106 140 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (360)
Q Consensus 140 ~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 218 (360)
...++++|+ +..... ..+|..++.+++|++|++.++.+...+ ....+++|++|.++++.++ .+..-+..+++|
T Consensus 79 ~~~~l~~L~--L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALE--LRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRL 152 (328)
T ss_dssp TSTTCCEEE--EESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTC
T ss_pred cccceeEEE--ccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCC
Confidence 336777777 543322 266666777888888888887765332 3456788888888887764 223336678888
Q ss_pred cEEEeecCCCCCcccc-----------ccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCc
Q 018106 219 EDLCFSNCWGLKHLCV-----------SKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL 286 (360)
Q Consensus 219 e~L~l~~c~~~~~~~i-----------~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L 286 (360)
++|++.+|...+.+.. .++++|+.|++.++. ..+......+++|++|+++.+.... .+..+..+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence 8888888765443321 236788888888775 2222223357788888888554432 22346677888
Q ss_pred cEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhh---hhcCCccceEeccccccccc
Q 018106 287 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKS 345 (360)
Q Consensus 287 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i---~~~~~~L~~L~l~~c~~l~~ 345 (360)
+.|+++++.+... +...+..+++|++|+|++|.....+ ...+++|+.|++++|..++.
T Consensus 232 ~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 232 EELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 8888877665443 2223556788888888887433322 34567788888887765443
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=1.2e-13 Score=125.64 Aligned_cols=202 Identities=20% Similarity=0.198 Sum_probs=138.2
Q ss_pred HHHHHHHHHcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHH
Q 018106 133 DRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQ 209 (360)
Q Consensus 133 ~~~l~~~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~ 209 (360)
+..+.....++++.++ +..... ...+..++.+++|++|++.+|.+.... ....+++|++|.++++.+++....
T Consensus 61 ~~~~~~~~~~~l~~L~--l~~n~l--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFR--CPRSFM--DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp HHHHHHHHHTTCSEEE--CTTCEE--CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred HHHHHhhhhccceEEE--cCCccc--cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence 3445555557888888 543221 122233566889999999998765321 345788999999999887766665
Q ss_pred HHHhcCCcccEEEeecCCCCCcc----ccccCCCccEEEeccc-c-c--hhhhHhhcCC-CccEEEEEeec--CC-Ccce
Q 018106 210 KLASECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSF-S-E--EIEIVEISVP-SLQQLTLLFYG--AR-RPRV 277 (360)
Q Consensus 210 ~l~~~cp~Le~L~l~~c~~~~~~----~i~~l~~L~~L~l~~~-~-~--~~~~~~~~~p-~L~~L~l~~~~--~~-~~~~ 277 (360)
. +..+|+|++|++.+|..+... .+.++++|+.|++.+| . . .+......+| +|++|+++.+. .. ....
T Consensus 137 ~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 137 T-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp H-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred H-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 4 566999999999988655532 1345789999999988 4 1 2344455788 99999998552 22 2223
Q ss_pred eeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCChhh----hhhcCCccceEecccc
Q 018106 278 VEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLFRSC 340 (360)
Q Consensus 278 ~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~~~~----i~~~~~~L~~L~l~~c 340 (360)
..+..+++|+.|+++++. +++..+. .+..+++|++|++++|..... ....+++|+.|++.+|
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 345678999999998887 6665444 356789999999998843222 2346889999999888
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=5.8e-13 Score=130.44 Aligned_cols=89 Identities=16% Similarity=0.223 Sum_probs=58.7
Q ss_pred hcCCCccEEEEEeecC--CCcce-eeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh----hhhhhcC
Q 018106 257 ISVPSLQQLTLLFYGA--RRPRV-VEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP----GKIKISS 329 (360)
Q Consensus 257 ~~~p~L~~L~l~~~~~--~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~----~~i~~~~ 329 (360)
..+++|++|+++.+.. ..... .....+++|+.|++.++.+++..+..++..+++|++|+|++|... ..+...+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 3456666666653221 11111 112347888888888888888777888888899999999988522 2334567
Q ss_pred CccceEecccccccccc
Q 018106 330 NQLKNLLFRSCKYLKSA 346 (360)
Q Consensus 330 ~~L~~L~l~~c~~l~~~ 346 (360)
++|+.|++++|. ++..
T Consensus 513 ~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 513 PSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp SSCCEEEEESCB-CCTT
T ss_pred CccCeeECcCCc-CCHH
Confidence 889999999887 5554
No 7
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.35 E-value=9.5e-12 Score=111.84 Aligned_cols=186 Identities=13% Similarity=0.085 Sum_probs=128.4
Q ss_pred HcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (360)
Q Consensus 141 ~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 220 (360)
..++++|+ +..+.... ++ .+..+++|++|++.+|.+........+++|++|.++++.++.-. -+..+++|++
T Consensus 40 l~~L~~L~--l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLS--AFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEE--CTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCE
T ss_pred cCCcCEEE--eeCCCccC--ch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCE
Confidence 35888888 54433222 33 45667889999998888765444667888999999888874321 2677889999
Q ss_pred EEeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcH
Q 018106 221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 299 (360)
Q Consensus 221 L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 299 (360)
|++.+|.......+..+++|+.|+++++. ..+.. ...+++|+.|+++.+....... +..+++|+.|+++++.+++-
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 99988865443345667889999998876 22222 3367889999888654433222 67888999999988877653
Q ss_pred HHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEeccccc
Q 018106 300 EFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 300 ~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c~ 341 (360)
.. +..+++|++|++++|.. ... ...+++|+.|++.++.
T Consensus 189 ~~---l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 189 SP---LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GG---GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred hh---hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 21 66788899999988722 222 3467788888887764
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.34 E-value=1.1e-11 Score=113.05 Aligned_cols=166 Identities=14% Similarity=0.098 Sum_probs=92.9
Q ss_pred ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEec
Q 018106 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~ 246 (360)
.+++|++|++.+|.+........+++|++|.++++.+.+-.. +..+++|+.|++.+|.......+..+++|+.|++.
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG 229 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred hCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEcc
Confidence 344455555554444332223445555555555555421111 44555555555555543322224456777777777
Q ss_pred ccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---
Q 018106 247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP--- 322 (360)
Q Consensus 247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~--- 322 (360)
+|. ..... ...+++|++|+++.+..... ..+..+++|+.|+++++.+++- ..+..+++|++|++++|...
T Consensus 230 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 230 NNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp SSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGG
T ss_pred CCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcC
Confidence 765 12222 33567777777775443221 2356777888888877776553 23566788888888877332
Q ss_pred hhhhhcCCccceEeccccc
Q 018106 323 GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 323 ~~i~~~~~~L~~L~l~~c~ 341 (360)
......+++|+.|+++++.
T Consensus 304 ~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHHHHTCTTCSEEECCSSS
T ss_pred hhHhhccccCCEEEccCCc
Confidence 2223457788888888775
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.34 E-value=1.4e-11 Score=112.48 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=130.1
Q ss_pred ccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEE
Q 018106 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (360)
Q Consensus 165 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 244 (360)
+..+++|+.|++.+|.+........+++|+.|.++++.+.+... +..+++|++|++.+|.......+..+++|+.|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 249 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLE 249 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEE
Confidence 55689999999999988765456788999999999998743322 678999999999998754444466789999999
Q ss_pred ecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh
Q 018106 245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG 323 (360)
Q Consensus 245 l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~ 323 (360)
+.++. ..+. ....+++|++|+++.+..... ..+..+++|+.|+++++.++.... ..+..+++|++|++++|....
T Consensus 250 l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 250 IGTNQISDIN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCC
T ss_pred CCCCccCCCh-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCcccc
Confidence 99986 2222 234788999999996654332 246789999999999998876543 446789999999999984322
Q ss_pred hh-hhcCCccceEeccccc
Q 018106 324 KI-KISSNQLKNLLFRSCK 341 (360)
Q Consensus 324 ~i-~~~~~~L~~L~l~~c~ 341 (360)
.. ...+++|+.|++.++.
T Consensus 326 ~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CGGGGGCTTCSEESSSCC-
T ss_pred ccChhhhhccceeehhhhc
Confidence 21 4568899999998774
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.33 E-value=1.3e-12 Score=118.61 Aligned_cols=215 Identities=16% Similarity=0.056 Sum_probs=148.9
Q ss_pred CcccceEEEEeecCCCCCChhhHHHHHHHHHHcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC-Ccc
Q 018106 110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSI 188 (360)
Q Consensus 110 ~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~ 188 (360)
...++.+.+...... . +...+. ...++++|+ +...... .+|..+..+++|++|++.+|.+...+ ...
T Consensus 80 ~~~l~~L~L~~n~l~--~----lp~~l~--~l~~L~~L~--L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 80 QPGRVALELRSVPLP--Q----FPDQAF--RLSHLQHMT--IDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp STTCCEEEEESSCCS--S----CCSCGG--GGTTCSEEE--EESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred ccceeEEEccCCCch--h----cChhhh--hCCCCCEEE--CCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHh
Confidence 467777776643221 1 111111 146899999 6544333 67777888999999999999877433 456
Q ss_pred CCCCCCEEEeeeEEeChHHHHHH--------HhcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc-chhhhHhh
Q 018106 189 MLCSLKKLTLERVCLDEQMVQKL--------ASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEI 257 (360)
Q Consensus 189 ~~~~L~~L~L~~~~~~~~~l~~l--------~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~-~~~~~~~~ 257 (360)
.+++|++|.++++.........+ +.++++|++|++.+|... .+ .+..+++|+.|++.++. ..+.....
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~ 226 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIH 226 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence 78999999999986522111111 235999999999998643 32 24567999999999887 22222234
Q ss_pred cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhh---hcCCccce
Q 018106 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKN 334 (360)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~---~~~~~L~~ 334 (360)
.+++|++|+++.+......+..+..+++|+.|+++++.+.... ...+..+++|++|+|++|.....+. ...++|+.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 7899999999976666666667889999999999987655432 2236789999999999985544443 45667777
Q ss_pred Eecc
Q 018106 335 LLFR 338 (360)
Q Consensus 335 L~l~ 338 (360)
+.+.
T Consensus 306 l~l~ 309 (328)
T 4fcg_A 306 ILVP 309 (328)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7765
No 11
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=2.2e-12 Score=126.34 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=43.2
Q ss_pred CCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh----hhhhcCCccceEecccccc
Q 018106 283 SPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG----KIKISSNQLKNLLFRSCKY 342 (360)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~----~i~~~~~~L~~L~l~~c~~ 342 (360)
+++|+.|++.++.+++..+..+...+++|++|+|++|...+ .+...+++|+.|++++|..
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 67788888887777777777766778888888888875422 2233567888888888865
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.29 E-value=7.5e-12 Score=112.77 Aligned_cols=195 Identities=15% Similarity=0.021 Sum_probs=130.1
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccC--CCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ--PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
+.+++|+ +.........+|..+..+++|++|++.++.+.. +.....+++|++|.++++.++.... ..+..+++|+
T Consensus 76 ~~L~~L~--L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLY--IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLV 152 (313)
T ss_dssp TTCSEEE--EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCC
T ss_pred CCCCeee--CCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCCCC
Confidence 6788888 542122234567677788999999999988752 2245678899999999988742221 2356789999
Q ss_pred EEEeecCCCCCcc--ccccCC-CccEEEecccc-c-hhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106 220 DLCFSNCWGLKHL--CVSKAS-KLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (360)
Q Consensus 220 ~L~l~~c~~~~~~--~i~~l~-~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (360)
+|++.+|...+.+ .+..++ +|+.|++.++. . .........+ |+.|+++.+.........+..+++|+.|+++++
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 9999988643222 334455 89999998876 1 1111112233 888888855444344455678899999999888
Q ss_pred ccCcHHHHHHhcCCCCCCEEEecCcCC---hhhhhhcCCccceEecccccc
Q 018106 295 YFADNEFNHLISKFPSLEDLFVTRCCL---PGKIKISSNQLKNLLFRSCKY 342 (360)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~L~~c~~---~~~i~~~~~~L~~L~l~~c~~ 342 (360)
.++... .. +..+++|++|++++|.. ........++|+.|+++++.-
T Consensus 232 ~l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 232 SLAFDL-GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCBG-GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ceeeec-Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 776432 11 56678999999998833 223345678899999887754
No 13
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.26 E-value=2.8e-11 Score=108.75 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=126.6
Q ss_pred ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEec
Q 018106 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~ 246 (360)
..++|++|++.++.+........+++|++|.++++.+++-.. +..+++|++|++.+|.....-.+..+++|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 468999999999987755456779999999999998843222 78899999999999875433345668999999999
Q ss_pred ccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--Chh
Q 018106 247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPG 323 (360)
Q Consensus 247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~ 323 (360)
++. ..+.. ...+++|++|+++.+....... +..+++|+.|+++++.+++-.. +..+++|++|++++|. ...
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcCh
Confidence 987 22222 3478999999999665433222 7789999999999998876322 7789999999999983 222
Q ss_pred hhhhcCCccceEeccccc
Q 018106 324 KIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 324 ~i~~~~~~L~~L~l~~c~ 341 (360)
. ...+++|+.|+++++.
T Consensus 190 ~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp G-GGGCTTCCEEECTTSC
T ss_pred h-hcCCCCCCEEEccCCc
Confidence 2 4568899999998874
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=1.3e-11 Score=114.57 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=101.1
Q ss_pred cccCCccEEEEeeeeccCCC------CccCCCCCCEEEeeeEEeChHH---HHHHHhcC---------CcccEEEeecCC
Q 018106 166 FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQM---VQKLASEC---------PLLEDLCFSNCW 227 (360)
Q Consensus 166 ~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~---l~~l~~~c---------p~Le~L~l~~c~ 227 (360)
..+++|++|+|++|.+...+ ....+++|++|.|+++.+++.. +...+..+ |+|++|++.+|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 45677777777777766532 2245677777777777764333 22233334 777777777765
Q ss_pred CCC-cc-----ccccCCCccEEEeccccc---hhhh----HhhcCCCccEEEEEeecCC----CcceeeccCCCCccEEE
Q 018106 228 GLK-HL-----CVSKASKLKIMEIRSFSE---EIEI----VEISVPSLQQLTLLFYGAR----RPRVVEVARSPHLKKLD 290 (360)
Q Consensus 228 ~~~-~~-----~i~~l~~L~~L~l~~~~~---~~~~----~~~~~p~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~ 290 (360)
... .+ .+..+++|+.|.+.+|.- .... ....+++|+.|+++.+... ......+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 321 11 122456777777777651 1111 1235677777777754432 12223456677777777
Q ss_pred eeccccCcHHHH---HHhc--CCCCCCEEEecCcCChh----hhh----hcCCccceEecccccc
Q 018106 291 LVSVYFADNEFN---HLIS--KFPSLEDLFVTRCCLPG----KIK----ISSNQLKNLLFRSCKY 342 (360)
Q Consensus 291 l~~~~~~~~~~~---~~~~--~~~~L~~L~L~~c~~~~----~i~----~~~~~L~~L~l~~c~~ 342 (360)
|+++.+++.... ..+. .+++|++|+|++|.... .+. ..+++|+.|++.++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 777777664333 2232 26777777777773322 122 3457777777776643
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=9.9e-12 Score=110.32 Aligned_cols=173 Identities=16% Similarity=0.043 Sum_probs=78.5
Q ss_pred cccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEE-eChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCc
Q 018106 166 FSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKL 240 (360)
Q Consensus 166 ~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L 240 (360)
..+++|++|++.++.+... .....+++|++|.++++. ++.-.. ..+..+++|++|++.+|..... -.+..+++|
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 3455666666665544321 123445566666666554 321111 1134456666666655543221 112334566
Q ss_pred cEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106 241 KIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (360)
Q Consensus 241 ~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 318 (360)
+.|++.++. ..+.. ....+++|++|+++.+.........+..+++|+.|++.++.++... ...+..+++|++|++++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCC
Confidence 666665553 11111 1123455666666533322111112445566666666555544321 12234455666666665
Q ss_pred cCC---hhhhhhcCCccceEecccc
Q 018106 319 CCL---PGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 319 c~~---~~~i~~~~~~L~~L~l~~c 340 (360)
|.. .......+++|+.|++.+.
T Consensus 211 n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CcCCcCCHHHcccCcccCEEeccCC
Confidence 511 1122334555666665544
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.25 E-value=1.3e-11 Score=108.97 Aligned_cols=187 Identities=14% Similarity=0.074 Sum_probs=124.5
Q ss_pred HcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (360)
Q Consensus 141 ~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 220 (360)
..+++++. +...... . ...+..+++|++|++.+|.+........+++|++|.++++.++.-. ...+..+++|++
T Consensus 40 l~~L~~L~--l~~~~i~--~-~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQII--ANNSDIK--S-VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEE--CTTSCCC--C-CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred ccceeeee--eCCCCcc--c-ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCE
Confidence 46888888 5443222 1 2245668999999999988765545667889999999988774222 123567899999
Q ss_pred EEeecCCCCCccc--cccCCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 221 LCFSNCWGLKHLC--VSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 221 L~l~~c~~~~~~~--i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
|++.+|....... +..+++|+.|++.++. ..+.. ....+++|+.|+++.+.........+..+++|+.|++.++.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 9998886432221 4557899999998885 22211 123578899999986655433333457788999999988877
Q ss_pred CcHHHHHHhcCCCCCCEEEecCcCChhhhhhcCCccceEecc
Q 018106 297 ADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFR 338 (360)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~~~~~L~~L~l~ 338 (360)
+.. ....+..+++|++|++.+|+.. ..+++|+.|.+.
T Consensus 194 ~~~-~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~ 230 (272)
T 3rfs_A 194 KSV-PDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEW 230 (272)
T ss_dssp SCC-CTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHH
T ss_pred Ccc-CHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHH
Confidence 653 2334667889999999887322 234555555544
No 17
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.24 E-value=2.7e-11 Score=107.94 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=116.1
Q ss_pred HcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (360)
Q Consensus 141 ~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 220 (360)
..+++.|. +..+.... ++ .+..+++|+.|++.+|.+........+++|+.|.++++.++. +.. +..+++|+.
T Consensus 45 l~~L~~L~--l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQII--ANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEE--CTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCE
T ss_pred cCcccEEE--ccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCE
Confidence 36788888 64433222 22 355688999999999887654446678899999999888743 222 678899999
Q ss_pred EEeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcH
Q 018106 221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 299 (360)
Q Consensus 221 L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 299 (360)
|++.+|.....-.+..+++|+.|+++++. ..+ .....+++|+.|+++.+....... +..+++|+.|+++++.+++-
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 99988865433345567889999998876 222 223367888888888655433222 67888889998888877663
Q ss_pred HHHHHhcCCCCCCEEEecCc
Q 018106 300 EFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 300 ~~~~~~~~~~~L~~L~L~~c 319 (360)
. .+..+++|+.|++++|
T Consensus 194 --~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 194 --R-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp --G-GGTTCTTCSEEEEEEE
T ss_pred --h-hhccCCCCCEEECcCC
Confidence 2 2677888888888887
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.23 E-value=8.3e-11 Score=111.87 Aligned_cols=187 Identities=14% Similarity=0.109 Sum_probs=88.9
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
+++++|+ +..+.... + ..+..+++|++|++.+|.+........+++|+.|.++++.+++- . .+..+++|+.|
T Consensus 177 ~~L~~L~--l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L 248 (466)
T 1o6v_A 177 TTLERLD--ISSNKVSD--I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDL 248 (466)
T ss_dssp TTCCEEE--CCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEE
T ss_pred CCCCEEE--CcCCcCCC--C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--h-hhhcCCCCCEE
Confidence 5677777 54332211 1 22445667777777766654433334456666666666655321 1 13455566666
Q ss_pred EeecCCCCCccccccCCCccEEEecccc-chhhhH---------------------hhcCCCccEEEEEeecCCCcceee
Q 018106 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIV---------------------EISVPSLQQLTLLFYGARRPRVVE 279 (360)
Q Consensus 222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~---------------------~~~~p~L~~L~l~~~~~~~~~~~~ 279 (360)
++.+|.......+..+++|+.|++.++. .....+ ...+|+|+.|+++.+.......
T Consensus 249 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-- 326 (466)
T 1o6v_A 249 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-- 326 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--
T ss_pred ECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--
Confidence 6655543222223344455555554443 111110 1234455555555333222111
Q ss_pred ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhh-hhcCCccceEeccccc
Q 018106 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCK 341 (360)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i-~~~~~~L~~L~l~~c~ 341 (360)
+..+++|+.|++.++.+++. ..+..+++|+.|++++|...... ...+++|+.|++.++.
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 34555555555555554442 12445566666666655221111 2345566666666553
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=112.85 Aligned_cols=174 Identities=15% Similarity=0.076 Sum_probs=84.0
Q ss_pred cCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEE-eChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCcc
Q 018106 168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLK 241 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~ 241 (360)
+++|++|++.++.+.... ....+++|++|.++++. ++.-. ...+..+++|++|++.+|..... ..+..+++|+
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 455555555555443221 12345555555555542 21110 11134455555555555432111 1223345566
Q ss_pred EEEecccc-chhhhH-hhcCCCccEEEEEeecCCCccee---eccCCCCccEEEeeccccCcHHH---HHHhcCCCCCCE
Q 018106 242 IMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVV---EVARSPHLKKLDLVSVYFADNEF---NHLISKFPSLED 313 (360)
Q Consensus 242 ~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~ 313 (360)
.|++.++. ..+... .-.+++|+.|+++.+........ .....+.++.+++....+.+..+ ...+..+++|++
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 66665554 111111 11356666666664433221111 11234556666666665555433 334567888888
Q ss_pred EEecCcCC---hhhhhhcCCccceEecccccc
Q 018106 314 LFVTRCCL---PGKIKISSNQLKNLLFRSCKY 342 (360)
Q Consensus 314 L~L~~c~~---~~~i~~~~~~L~~L~l~~c~~ 342 (360)
|++++|.. ...+...+++|+.|++.+++.
T Consensus 282 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 88888721 222334567888888887653
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.22 E-value=1.2e-11 Score=121.43 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=28.9
Q ss_pred cCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecC
Q 018106 160 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC 226 (360)
Q Consensus 160 ~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 226 (360)
.+|..+..+++|++|++.+|.+.... ....+++|++|.++++.+........+..+++|++|++.+|
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 34444444555555555555443211 23344555555555443321111111334455555555444
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.22 E-value=1.2e-10 Score=110.78 Aligned_cols=184 Identities=14% Similarity=0.085 Sum_probs=122.2
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
.+++++. +... ...++ .+..+++|+.|++.+|.+........+++|++|.++++.+..... +..+++|++|
T Consensus 156 ~~L~~L~--l~~~---~~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L 226 (466)
T 1o6v_A 156 TSLQQLS--FGNQ---VTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDEL 226 (466)
T ss_dssp TTCSEEE--EEES---CCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEE
T ss_pred CcccEee--cCCc---ccCch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEE
Confidence 6889999 4321 11222 356789999999999987765556788999999999998743221 5679999999
Q ss_pred EeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHH
Q 018106 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (360)
Q Consensus 222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (360)
++.+|.....-.+..+++|+.|++.++. ..... ...+++|++|+++.+....... +..+++|+.|++.++.+++..
T Consensus 227 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 227 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred ECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch
Confidence 9999865443345667999999999987 22222 3467899999998654433222 566777777777776665422
Q ss_pred HHHHhcCCCCCCEEEecCcCChhhh-hhcCCccceEecccc
Q 018106 301 FNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSC 340 (360)
Q Consensus 301 ~~~~~~~~~~L~~L~L~~c~~~~~i-~~~~~~L~~L~l~~c 340 (360)
. +..+++|++|++++|...... ...+++|+.|++.++
T Consensus 304 ~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 304 P---ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp G---GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred h---hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence 1 456677777777766211111 234455555555544
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.20 E-value=3.3e-11 Score=108.55 Aligned_cols=195 Identities=16% Similarity=0.054 Sum_probs=135.9
Q ss_pred CceEEEeecccCCCc-cccCcccccccCCccEEEEee-eeccCC--CCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106 143 GVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVW-CRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (360)
Q Consensus 143 ~l~~L~~~l~~~~~~-~~~l~~~l~~~~~L~~L~L~~-~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 218 (360)
+|++|+ +...... ...+|..+...++|++|++.+ +.+... .....+++|++|.++++.++.... ..+..+++|
T Consensus 51 ~l~~L~--L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTL 127 (313)
T ss_dssp CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred eEEEEE--CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCCCC
Confidence 678888 5443222 125777888899999999995 555422 245678999999999998742222 236789999
Q ss_pred cEEEeecCCCCCc--cccccCCCccEEEecccc-c-hhhhHhhcCC-CccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106 219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-E-EIEIVEISVP-SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (360)
Q Consensus 219 e~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~-~~~~~~~~~p-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (360)
++|++.+|..... ..+..+++|+.|+++++. . .+.......+ +|++|+++.+......+..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999865322 235568999999999886 1 2222223455 899999996554433444556665 99999999
Q ss_pred cccCcHHHHHHhcCCCCCCEEEecCcCChh--hhhhcCCccceEecccccc
Q 018106 294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCKY 342 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~--~i~~~~~~L~~L~l~~c~~ 342 (360)
+.++.. ....+..+++|++|++++|.... ......++|+.|+++++.-
T Consensus 207 N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 207 NMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp SEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred CcccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc
Confidence 887653 34456789999999999983221 1234578999999988754
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.20 E-value=2.2e-11 Score=115.44 Aligned_cols=193 Identities=16% Similarity=0.066 Sum_probs=111.7
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
+++++|+ +....... ..+..+..+++|++|+|.+|.+.... ....+++|++|.|+++.++.-. ...+..+++|+
T Consensus 99 ~~L~~L~--Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 174 (452)
T 3zyi_A 99 HHLEVLQ--LGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLM 174 (452)
T ss_dssp TTCCEEE--CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred CCCCEEE--CCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCccc
Confidence 4666666 43322211 11223344677777777777654322 2445677777777777653211 12245677777
Q ss_pred EEEeecCCCCCccc---cccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc
Q 018106 220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 295 (360)
Q Consensus 220 ~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (360)
+|++.+|..+..+. +..+++|+.|+++++. ..+.. ...+++|+.|+++.+.........+..+++|+.|++.++.
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 77777766555433 3356777777777765 11111 1255677777777554433334456677888888887776
Q ss_pred cCcHHHHHHhcCCCCCCEEEecCcCC---hhhhhhcCCccceEecccc
Q 018106 296 FADNEFNHLISKFPSLEDLFVTRCCL---PGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~L~~c~~---~~~i~~~~~~L~~L~l~~c 340 (360)
++... ...+..+++|++|+|++|.. .......+++|+.|++.+.
T Consensus 254 l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 254 VSLIE-RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CCEEC-TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CceEC-HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 65432 22356678888888887721 1223345677888887654
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.19 E-value=9.8e-12 Score=111.49 Aligned_cols=197 Identities=14% Similarity=0.030 Sum_probs=109.0
Q ss_pred cCceEEEeecccCCCcc-ccCcccccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
+++++|+ +....... ...+.....+++|++|++.++.+.... ....+++|++|.++++.++.......+..+++|+
T Consensus 52 ~~L~~L~--L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 52 TQLTKLS--LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp TTCSEEE--CCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred ccCCEEE--CCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence 4677777 43322211 112334445677777777776654222 2445677777777777663222112355677777
Q ss_pred EEEeecCCCCCc--cccccCCCccEEEeccccc-h--hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106 220 DLCFSNCWGLKH--LCVSKASKLKIMEIRSFSE-E--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (360)
Q Consensus 220 ~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~~-~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (360)
+|++.+|..... ..+..+++|+.|++.++.- . .......+++|++|+++.+.........+..+++|+.|+++++
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 777777653211 1234457777777777651 1 1122235677777777754443322334566777888887777
Q ss_pred ccCcHHHHHHhcCCCCCCEEEecCcCChhh---hhhcC-CccceEeccccc
Q 018106 295 YFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISS-NQLKNLLFRSCK 341 (360)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~---i~~~~-~~L~~L~l~~c~ 341 (360)
.++... ...+..+++|++|++++|..... ..... ++|+.|++++..
T Consensus 210 ~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 210 NFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCSBCC-SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCccC-hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 665421 11245677788888877732221 11223 377777776643
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=1.8e-11 Score=108.02 Aligned_cols=171 Identities=16% Similarity=0.078 Sum_probs=93.6
Q ss_pred ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc--cccCCCccEEE
Q 018106 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIME 244 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~l~~L~~L~ 244 (360)
..++|+.|.+.++.+........+++|++|.++++.+..- . -+..+++|++|++.+|....... +..+++|+.|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3566677777766655444455667777777776665321 1 24566777777777664322111 34456777777
Q ss_pred ecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC-
Q 018106 245 IRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL- 321 (360)
Q Consensus 245 l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~- 321 (360)
+.++. ..+.. ....+++|++|++..+.........+..+++|+.|+++++.++.. ....+..+++|++|++++|..
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcCC
Confidence 76664 11111 112456677777765443322222345667777777776665532 122345567777777776621
Q ss_pred --hhhhhhcCCccceEeccccc
Q 018106 322 --PGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 322 --~~~i~~~~~~L~~L~l~~c~ 341 (360)
.......+++|+.|++.++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHHhCCcCCCEEEccCCC
Confidence 11223445667777776543
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.18 E-value=2.9e-11 Score=107.33 Aligned_cols=172 Identities=15% Similarity=0.060 Sum_probs=124.5
Q ss_pred cCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc---ccccCCCccE
Q 018106 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKI 242 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~l~~L~~ 242 (360)
.++|++|++.++.+.... ....+++|++|.++++.++.-.. ..+..+++|++|++.+|..+..+ .+..+++|+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 468999999998875432 35678999999999987743222 23577999999999998644433 3456799999
Q ss_pred EEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC
Q 018106 243 MEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (360)
Q Consensus 243 L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 320 (360)
|++.++. ... ......+++|++|+++.+.........+..+++|+.|+++++.++.- ....+..+++|++|++++|.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCc
Confidence 9999886 222 12233678999999996655433333467899999999999887652 22236678999999999983
Q ss_pred Ch---hhhhhcCCccceEeccccc
Q 018106 321 LP---GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 321 ~~---~~i~~~~~~L~~L~l~~c~ 341 (360)
.. ......+++|+.|++.++.
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHhHccCcccccEeeCCCCc
Confidence 32 2233467899999998863
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.18 E-value=3.2e-11 Score=113.92 Aligned_cols=193 Identities=17% Similarity=0.121 Sum_probs=122.9
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
+++++|+ +..+.... ..+..+..+++|++|+|.+|.+.... ....+++|++|.++++.++.-. ...+..+++|+
T Consensus 88 ~~L~~L~--Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~ 163 (440)
T 3zyj_A 88 RHLEILQ--LSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLR 163 (440)
T ss_dssp SSCCEEE--CCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred CCCCEEE--CCCCcCCc-cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccC
Confidence 4677777 54332211 11233445788888888888765433 3456788888888888764211 12356788888
Q ss_pred EEEeecCCCCCccc---cccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc
Q 018106 220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 295 (360)
Q Consensus 220 ~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (360)
+|++.+|..+..+. +.++++|+.|++.++. ..+.. ...+++|+.|+++.+.........+..+++|+.|++.++.
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 88888876655433 3456888888888775 11111 2356788888888554433333456778888888888877
Q ss_pred cCcHHHHHHhcCCCCCCEEEecCcC---ChhhhhhcCCccceEecccc
Q 018106 296 FADNEFNHLISKFPSLEDLFVTRCC---LPGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~L~~c~---~~~~i~~~~~~L~~L~l~~c 340 (360)
++... ...+..+++|++|+|++|. ........+++|+.|++.+.
T Consensus 243 l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 243 IQVIE-RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCEEC-TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred eeEEC-hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 65532 2335677888888888872 12233345678888888764
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=1.1e-10 Score=97.68 Aligned_cols=146 Identities=20% Similarity=0.196 Sum_probs=83.4
Q ss_pred ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCC--ccccccCCCccEEE
Q 018106 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME 244 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~i~~l~~L~~L~ 244 (360)
.+++|+.|++.++.+........+++|++|.++++.+..-. .+..+|+|++|++.+|.... ...+..+++|+.|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 35667777777766654334556677777777777542221 25567777888777765432 22334567777777
Q ss_pred ecccc-ch-hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 245 IRSFS-EE-IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 245 l~~~~-~~-~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
++++. .. .......+++|++|+++.+....... .+..+++|+.|+++++.+++-. .+..+++|++|++.++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence 77665 11 11112355666666666443111222 3556677777777666665421 3456666777776664
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.18 E-value=5.5e-11 Score=104.70 Aligned_cols=172 Identities=16% Similarity=0.077 Sum_probs=88.7
Q ss_pred cCceEEEeecccCCCccccCcc-cccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106 142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 218 (360)
.++++|+ +..... ..++. .+..+++|++|++.++.+.... ....+++|++|.++++.+..-.. ..+..+++|
T Consensus 37 ~~l~~L~--l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLD--LQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNL 111 (270)
T ss_dssp TTCSEEE--CCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSC
T ss_pred CCCCEEE--CcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCC
Confidence 3566666 433221 12222 3344667777777766654332 22456677777777666532111 224556777
Q ss_pred cEEEeecCCCCCc--cccccCCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106 219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (360)
Q Consensus 219 e~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (360)
++|++.++..... ..+..+++|+.|+++++. ..+.. ....+++|++|++..+.........+..+++|+.|+++++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 7777766543221 113345677777776664 11111 1124566777776644333222223455667777777666
Q ss_pred ccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 295 YFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
.++.- ....+..+++|+.|+|.+|
T Consensus 192 ~l~~~-~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 192 QLKRV-PEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCCcC-CHHHhccccCCCEEEecCC
Confidence 55432 1223455666777777665
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.17 E-value=2.4e-11 Score=122.73 Aligned_cols=196 Identities=18% Similarity=0.130 Sum_probs=103.5
Q ss_pred cCceEEEeecccCCCccccCcc--cccccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHH--HHhc
Q 018106 142 NGVRELDFENITDENTVYTLPQ--AIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQK--LASE 214 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~--l~~~ 214 (360)
.++++|+ +..+.. ...+|. .+..+++|++|++.+|.+.... ....+++|++|+++++.++...... .+..
T Consensus 100 ~~L~~L~--Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 100 ASLTSLD--LSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp TTCCEEE--CCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred CCCCEEE--CCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 4788888 543222 223444 6777888999999888765332 2256788888888888773322222 2567
Q ss_pred CCcccEEEeecCCCCCccccccCCCccEEEecccc-ch-hhhHhhcCCCccEEEEEeecCCCcceeeccC----------
Q 018106 215 CPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EE-IEIVEISVPSLQQLTLLFYGARRPRVVEVAR---------- 282 (360)
Q Consensus 215 cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~-~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~---------- 282 (360)
+++|++|++.+|...+......+++|+.|++.++. .. ... .-.+++|++|+++.+......+..+..
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 77777777776654333333445555555555554 00 111 123445555555533332222223344
Q ss_pred ------------CCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC---ChhhhhhcCCccceEeccccc
Q 018106 283 ------------SPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC---LPGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 283 ------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~---~~~~i~~~~~~L~~L~l~~c~ 341 (360)
+++|++|++.++.+++.....+...+++|++|++++|. ........+++|+.|++.++.
T Consensus 256 ~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp SSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred CCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 44555555544444322212222224666666666652 222233456667777776654
No 31
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.17 E-value=1.1e-11 Score=117.51 Aligned_cols=203 Identities=17% Similarity=0.174 Sum_probs=139.2
Q ss_pred HHHcCceEEEeecccCCCccc---cCcccccccCCccEEEEeeeeccCCC---CccCCC----CCCEEEeeeEEeChH--
Q 018106 139 AVENGVRELDFENITDENTVY---TLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLC----SLKKLTLERVCLDEQ-- 206 (360)
Q Consensus 139 ~~~~~l~~L~~~l~~~~~~~~---~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~----~L~~L~L~~~~~~~~-- 206 (360)
...+++++|+ +..+..... .++..+..+++|++|+++++.+.... ....++ +|++|.++++.+++.
T Consensus 25 ~~~~~L~~L~--L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 25 PLLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred hhcCCccEEE--ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 3447999999 655443322 45556667899999999998875422 122344 799999999998653
Q ss_pred -HHHHHHhcCCcccEEEeecCCCCCccc---c-----ccCCCccEEEecccc-c--h---hhhHhhcCCCccEEEEEeec
Q 018106 207 -MVQKLASECPLLEDLCFSNCWGLKHLC---V-----SKASKLKIMEIRSFS-E--E---IEIVEISVPSLQQLTLLFYG 271 (360)
Q Consensus 207 -~l~~l~~~cp~Le~L~l~~c~~~~~~~---i-----~~l~~L~~L~l~~~~-~--~---~~~~~~~~p~L~~L~l~~~~ 271 (360)
.+...+..+++|++|++.+|.. .... + ...++|++|++.+|. . . +......+++|++|+++.+.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 4555678999999999999863 2211 1 123589999999987 1 1 12223367999999999554
Q ss_pred CCCcceeec-----cCCCCccEEEeeccccCcHH---HHHHhcCCCCCCEEEecCcCChhh--------hhhcCCccceE
Q 018106 272 ARRPRVVEV-----ARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK--------IKISSNQLKNL 335 (360)
Q Consensus 272 ~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~c~~~~~--------i~~~~~~L~~L 335 (360)
........+ ...++|+.|+++++.+++.. +...+..+++|++|++++|..... +...+++|+.|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 432211112 23679999999999887753 455667899999999999843221 11247899999
Q ss_pred eccccccccc
Q 018106 336 LFRSCKYLKS 345 (360)
Q Consensus 336 ~l~~c~~l~~ 345 (360)
++++| .++.
T Consensus 262 ~L~~n-~l~~ 270 (461)
T 1z7x_W 262 WIWEC-GITA 270 (461)
T ss_dssp ECTTS-CCCH
T ss_pred ECcCC-CCCH
Confidence 99988 4444
No 32
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=6.4e-11 Score=115.89 Aligned_cols=165 Identities=16% Similarity=0.062 Sum_probs=116.5
Q ss_pred HcCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccE
Q 018106 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (360)
Q Consensus 141 ~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 220 (360)
..+|+.|. +..+... .++ .+..+++|+.|+|.+|.+........+++|+.|.|+++.+..- . -+..+++|+.
T Consensus 42 L~~L~~L~--l~~n~i~--~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQII--ANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCB--CTTCCCC--CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCE
T ss_pred CCCCCEEE--CcCCCCC--CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCE
Confidence 36788877 5433322 222 4566889999999998876554466788999999998887432 1 2677899999
Q ss_pred EEeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcH
Q 018106 221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 299 (360)
Q Consensus 221 L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 299 (360)
|+|.+|.....-.+..+++|+.|.+++|. ..+ .....+++|+.|+++.+......+ +..+++|+.|+|+++.+.+-
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 99988865443345567899999998886 222 223367889999888655543333 77888999999988877663
Q ss_pred HHHHHhcCCCCCCEEEecCc
Q 018106 300 EFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 300 ~~~~~~~~~~~L~~L~L~~c 319 (360)
. .+..+++|+.|+|++|
T Consensus 191 --~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 191 --R-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp --G-GGTTCTTCSEEECCSE
T ss_pred --h-HHccCCCCCEEEccCC
Confidence 2 3667888999998887
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.17 E-value=1.1e-10 Score=105.79 Aligned_cols=191 Identities=14% Similarity=0.068 Sum_probs=103.1
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
+++++|+ +..+... ...|..+..+++|++|++.++.+...+ ...+++|++|.++++.++.... ..+..+++|+.|
T Consensus 76 ~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 150 (330)
T 1xku_A 76 KNLHTLI--LINNKIS-KISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVRK-SVFNGLNQMIVV 150 (330)
T ss_dssp TTCCEEE--CCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBCH-HHHTTCTTCCEE
T ss_pred CCCCEEE--CCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccC-hhhcccccEEECCCCcccccCH-hHhcCCccccEE
Confidence 5677777 5432221 122444556778888888887665322 2233678888887776643222 235677888888
Q ss_pred EeecCCCC----CccccccCCCccEEEeccccchhhhHhh-cCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 222 CFSNCWGL----KHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 222 ~l~~c~~~----~~~~i~~l~~L~~L~l~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
++.++... ....+..+++|+.|++.++. +..+.. ..++|++|+++.+.........+..+++|+.|+++++.+
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCc--cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 88776542 11223445677777777664 111111 125666666664433222223455666666666666655
Q ss_pred CcHHHHHHhcCCCCCCEEEecCcC--ChhhhhhcCCccceEecccc
Q 018106 297 ADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~c~--~~~~i~~~~~~L~~L~l~~c 340 (360)
+... ...+..+++|++|++++|. .+......+++|+.|++.++
T Consensus 229 ~~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 229 SAVD-NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CEEC-TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred ceeC-hhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence 4421 1124456666666666652 11111234556666666544
No 34
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.16 E-value=8e-11 Score=111.58 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=55.7
Q ss_pred CCccEEEecccc-ch-----hhhHhhcCCCccEEEEEeecCCCcc-----eeeccCCCCccEEEeeccccCcHH---HHH
Q 018106 238 SKLKIMEIRSFS-EE-----IEIVEISVPSLQQLTLLFYGARRPR-----VVEVARSPHLKKLDLVSVYFADNE---FNH 303 (360)
Q Consensus 238 ~~L~~L~l~~~~-~~-----~~~~~~~~p~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~---~~~ 303 (360)
++|++|++.+|. .. +......+++|++|+++.+...... ......+++|+.|+++++.+++.. +..
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 466666666654 11 1111224566777766644322111 011224677777777777766644 344
Q ss_pred HhcCCCCCCEEEecCcCChh----hhh----hcCCccceEeccccc
Q 018106 304 LISKFPSLEDLFVTRCCLPG----KIK----ISSNQLKNLLFRSCK 341 (360)
Q Consensus 304 ~~~~~~~L~~L~L~~c~~~~----~i~----~~~~~L~~L~l~~c~ 341 (360)
.+..+++|++|++++|.... .+. ...++|+.|++.+|.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 45557777777777763321 111 123578888887775
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.16 E-value=1.4e-11 Score=110.48 Aligned_cols=194 Identities=16% Similarity=0.044 Sum_probs=129.5
Q ss_pred cCceEEEeecccCCCccccCcccc-cccCCccEEEEeeeeccCC----CCccCCCCCCEEEeeeEEeChHHHHHHHhcCC
Q 018106 142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQP----FDSIMLCSLKKLTLERVCLDEQMVQKLASECP 216 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp 216 (360)
.++++|+ +..... ..++... ..+++|++|++.++.+... .....+++|++|.++++.+.. +..-+..++
T Consensus 28 ~~l~~L~--L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLE--LESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLE 101 (306)
T ss_dssp TTCCEEE--CCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCT
T ss_pred CCCCEEE--CCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCC
Confidence 4788888 544332 2455443 4578899999988876532 123457889999998887631 111156788
Q ss_pred cccEEEeecCCCCCc---cccccCCCccEEEecccc-c-hhhhHhhcCCCccEEEEEeecCCC-cceeeccCCCCccEEE
Q 018106 217 LLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLD 290 (360)
Q Consensus 217 ~Le~L~l~~c~~~~~---~~i~~l~~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ 290 (360)
+|++|++.++..... ..+..+++|+.|+++++. . ........+++|++|++..+.... ..+..+..+++|+.|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 999999988754222 134567899999998876 1 111222357899999998554433 2344577889999999
Q ss_pred eeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEecccccc
Q 018106 291 LVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCKY 342 (360)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~~ 342 (360)
++++.++... ...+..+++|++|++++|... ......+++|+.|+++++.-
T Consensus 182 Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 182 LSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 9988876532 234667899999999998321 22334678999999998743
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.5e-10 Score=105.94 Aligned_cols=172 Identities=15% Similarity=0.047 Sum_probs=118.0
Q ss_pred cCceEEEeecccCCCccccCcc-cccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcc
Q 018106 142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 218 (360)
+++++|+ +...... .++. .+..+++|++|++.++.+.... ....+++|++|+++++.++.-. ...+..+++|
T Consensus 52 ~~L~~L~--l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLD--LSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSL 126 (353)
T ss_dssp TTCCEEE--CTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTC
T ss_pred ccCcEEE--CCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccC
Confidence 4788888 6443322 2333 4556899999999998765332 3567889999999998875322 2346789999
Q ss_pred cEEEeecCCCCCc---cccccCCCccEEEecccc--chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEee
Q 018106 219 EDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS--EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 292 (360)
Q Consensus 219 e~L~l~~c~~~~~---~~i~~l~~L~~L~l~~~~--~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 292 (360)
++|++.++..... ..+..+++|+.|++.++. ..+. .....+++|++|+++.+.........+..+++|++|+++
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 9999998854321 124567899999999874 1221 122367889999998665544334456788899999998
Q ss_pred ccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 293 SVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
++.++.. ....+..+++|++|++++|
T Consensus 207 ~n~l~~~-~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 207 MKQHILL-LEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp CSCSTTH-HHHHHHHTTTEEEEEEESC
T ss_pred CCccccc-hhhhhhhcccccEEECCCC
Confidence 8877542 3344556888999999887
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.16 E-value=1e-10 Score=111.48 Aligned_cols=104 Identities=19% Similarity=0.091 Sum_probs=58.3
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
.++++|+ +..+... ...+..+..+++|++|++.++.+.... ....+++|++|.++++.++.-.. ..+..+++|+
T Consensus 104 ~~L~~L~--Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~ 179 (477)
T 2id5_A 104 SNLTKLD--ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLI 179 (477)
T ss_dssp TTCCEEE--CTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCC
T ss_pred CCCCEEE--CCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCc
Confidence 4677777 4332211 112233445677888888776653221 34567788888888777643222 2356778888
Q ss_pred EEEeecCCCCC--ccccccCCCccEEEecccc
Q 018106 220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFS 249 (360)
Q Consensus 220 ~L~l~~c~~~~--~~~i~~l~~L~~L~l~~~~ 249 (360)
.|++.++.... ...+..+++|+.|++.++.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 88887765321 1123345566666666543
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.15 E-value=1.8e-10 Score=109.04 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=61.1
Q ss_pred cCCCccEEEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCE
Q 018106 236 KASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED 313 (360)
Q Consensus 236 ~l~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 313 (360)
.+++|+.|+++++. ... ......+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++|++
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 375 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKE 375 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhccccccccE
Confidence 45677777777665 111 111225567777777754443332334566777777777777665431 223556777888
Q ss_pred EEecCcCC---hhhhhhcCCccceEeccccc
Q 018106 314 LFVTRCCL---PGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 314 L~L~~c~~---~~~i~~~~~~L~~L~l~~c~ 341 (360)
|++++|.. ...+...+++|+.|++++++
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 88877621 12233456778888877654
No 39
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.15 E-value=4.4e-11 Score=107.50 Aligned_cols=203 Identities=17% Similarity=0.114 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHcCceEEEeecccCCCccccCcccc--cccCCccEEEEeeeeccCCC------CccCCCCCCEEEeeeEE
Q 018106 131 IVDRWIRLAVENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC 202 (360)
Q Consensus 131 ~~~~~l~~~~~~~l~~L~~~l~~~~~~~~~l~~~l--~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~ 202 (360)
.+..........++++|+ +..+.. ....+..+ ...++|++|++.+|.+.... ....+++|++|.++++.
T Consensus 80 ~~~~~~~~~~~~~L~~L~--l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 80 LLVGALRVLAYSRLKELT--LEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HHHHHHHHHHHSCCCEEE--EESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred HHHHHHHhcccCceeEEE--eeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence 455555555567899999 544322 22333344 56899999999999877432 12358999999999998
Q ss_pred eChHHHHHHHhcCCcccEEEeecCCCCCc------cccccCCCccEEEecccc-chhhh----HhhcCCCccEEEEEeec
Q 018106 203 LDEQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLLFYG 271 (360)
Q Consensus 203 ~~~~~l~~l~~~cp~Le~L~l~~c~~~~~------~~i~~l~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~~~~ 271 (360)
+..... ..+..+++|++|++.+|...+. .....+++|+.|++++|. ..+.. +.-..++|++|+++.+.
T Consensus 157 l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 157 SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence 743222 2356889999999999875332 222467899999999887 22222 22367999999999665
Q ss_pred CCCcceeeccCC---CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh-hhhhcCCccceEeccccc
Q 018106 272 ARRPRVVEVARS---PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 272 ~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~-~i~~~~~~L~~L~l~~c~ 341 (360)
.....+..+..+ ++|++|+++++.++. +.. .-+++|++|+|++|.... .....+++|+.|++++..
T Consensus 236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 236 LRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred CCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 544333333444 799999999988763 111 123799999999983322 234567899999987653
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.14 E-value=2.6e-11 Score=118.13 Aligned_cols=152 Identities=17% Similarity=0.130 Sum_probs=72.7
Q ss_pred cCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHH-HHHHHhcCCcccEEEeecCCCCCcc-ccccCCCccEEEe
Q 018106 168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQM-VQKLASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEI 245 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~c~~~~~~-~i~~l~~L~~L~l 245 (360)
+++|+.|.+.++..........+++|++|.++++.++... ....+..+++|++|++.+|...... .+..+++|+.|++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEc
Confidence 3444444444444332222256677777777776653221 1123556778888887776432111 1334566666666
Q ss_pred cccc-chhh--hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 246 RSFS-EEIE--IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 246 ~~~~-~~~~--~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
.++. .... .....+++|++|+++.+.........+..+++|+.|++.++.+.+..+...+..+++|++|++++|
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 6554 1110 112245556666665333222222233445555555555544432222223344555555555554
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.14 E-value=2.7e-11 Score=118.99 Aligned_cols=174 Identities=16% Similarity=0.074 Sum_probs=84.6
Q ss_pred ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHH-HHHHHhcCCcccEEEeecCCCCCc-cccccCCCccEEE
Q 018106 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQM-VQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIME 244 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~c~~~~~-~~i~~l~~L~~L~ 244 (360)
.+++|+.|++.++..........+++|+.|.++++.++... +...+..+++|++|++.+|..... ..+..+++|+.|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 45555556555553221113345677777777776653221 122356677777777777642110 1122345555555
Q ss_pred ecccc-chh--------------------------hhHhhcCCCccEEEEEeecCCC-cceeeccCCCCccEEEeecccc
Q 018106 245 IRSFS-EEI--------------------------EIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 245 l~~~~-~~~--------------------------~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
+.++. ... ......+++|++|++..+.... ..+..+..+++|+.|+++++.+
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 55443 111 0111133445555544332222 1223345566666666666555
Q ss_pred CcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106 297 ADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~ 341 (360)
+... ...+..+++|++|++++|... ......+++|+.|+++++.
T Consensus 486 ~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 486 EQIS-WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CEEC-TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CccC-hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 4321 223455666666666666221 1223345667777776654
No 42
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.13 E-value=1.1e-10 Score=117.86 Aligned_cols=153 Identities=15% Similarity=0.019 Sum_probs=101.2
Q ss_pred cccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEE
Q 018106 166 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (360)
Q Consensus 166 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 244 (360)
..+++|++|++.+|.+.... ....+++|++|.++++.++.... ..+..+++|++|++.+|...+.+....+++|++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 45677788888777664322 34567888888888887753333 34677888888888888654433333567888888
Q ss_pred ecccc-c-hhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 245 IRSFS-E-EIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 245 l~~~~-~-~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+.++. . .+.. +.-.+++|++|++..+......+..+..+++|+.|++.++.+.+......+..+++|++|++++|
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 88775 1 1111 11124788888888555444444556778888888888777664433444667888888888877
No 43
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.13 E-value=1e-10 Score=108.44 Aligned_cols=199 Identities=16% Similarity=0.122 Sum_probs=137.9
Q ss_pred cCceEEEeecccCCCcc---ccCcccccccCCccEEEEeeeeccCCC-----C-------ccCCCCCCEEEeeeEEeChH
Q 018106 142 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF-----D-------SIMLCSLKKLTLERVCLDEQ 206 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~L~~~~~~~~~-----~-------~~~~~~L~~L~L~~~~~~~~ 206 (360)
+++++|+ +..+.... ..+...+..+++|++|+|.+|.+.... . ...+++|++|.|+++.++..
T Consensus 32 ~~L~~L~--L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIV--LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp SCCCEEE--CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCccEEE--CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 7899999 65443222 123334556899999999997543211 1 14689999999999998654
Q ss_pred ---HHHHHHhcCCcccEEEeecCCCCCc--ccc----ccC---------CCccEEEecccc---chhhhH---hhcCCCc
Q 018106 207 ---MVQKLASECPLLEDLCFSNCWGLKH--LCV----SKA---------SKLKIMEIRSFS---EEIEIV---EISVPSL 262 (360)
Q Consensus 207 ---~l~~l~~~cp~Le~L~l~~c~~~~~--~~i----~~l---------~~L~~L~l~~~~---~~~~~~---~~~~p~L 262 (360)
.+...+..+++|+.|++.+|..... ..+ ..+ ++|++|.+++|. ..+..+ ...+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 3555678899999999999864211 111 123 799999999886 122322 2378899
Q ss_pred cEEEEEeecCCCc----cee-eccCCCCccEEEeeccccCc---HHHHHHhcCCCCCCEEEecCcCChhh----hhh---
Q 018106 263 QQLTLLFYGARRP----RVV-EVARSPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDLFVTRCCLPGK----IKI--- 327 (360)
Q Consensus 263 ~~L~l~~~~~~~~----~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~L~~c~~~~~----i~~--- 327 (360)
++|.++.+..... ... .+..+++|+.|+|+++.+++ ..+...+..+++|++|+|++|..... +..
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 9999996654321 111 46788999999999998875 33455678899999999999843222 221
Q ss_pred --cCCccceEecccccc
Q 018106 328 --SSNQLKNLLFRSCKY 342 (360)
Q Consensus 328 --~~~~L~~L~l~~c~~ 342 (360)
.+++|+.|+++++.-
T Consensus 270 ~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEI 286 (386)
T ss_dssp TCSSCCCCEEECCSSCC
T ss_pred hccCCCeEEEECcCCcC
Confidence 278999999998753
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.13 E-value=2.1e-10 Score=109.26 Aligned_cols=82 Identities=10% Similarity=0.050 Sum_probs=46.2
Q ss_pred CCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceE
Q 018106 259 VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNL 335 (360)
Q Consensus 259 ~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L 335 (360)
+++|++|+++.+..............+|+.|+++++.++.- ....+..+++|++|+|++|... ......+++|+.|
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC-CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEE
T ss_pred CcccceeeCCCCccccccCcccccCccccEEECcCCccccc-CHHHhcCccccCeeECCCCcCCccChhhccccccCCEE
Confidence 44555555553322222222222334677777776666542 2334677888999999887321 1223456788888
Q ss_pred eccccc
Q 018106 336 LFRSCK 341 (360)
Q Consensus 336 ~l~~c~ 341 (360)
++.++.
T Consensus 278 ~L~~n~ 283 (477)
T 2id5_A 278 QLVGGQ 283 (477)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 887653
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.12 E-value=1.9e-10 Score=109.00 Aligned_cols=180 Identities=18% Similarity=0.115 Sum_probs=109.1
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
+++++|+ +..+.... ++ +..+++|++|++.+|.+.... ...+++|++|.++++.++.- . +..+++|++|
T Consensus 64 ~~L~~L~--Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L 132 (457)
T 3bz5_A 64 TGLTKLI--CTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYL 132 (457)
T ss_dssp TTCSEEE--CCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEE
T ss_pred CCCCEEE--ccCCcCCe--Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEE
Confidence 5666666 43332222 12 344566777777666655432 44566777777777665332 1 4566777777
Q ss_pred EeecCCCCCccccccCCCccEEEeccccchhhhHh-hcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHH
Q 018106 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (360)
Q Consensus 222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (360)
++.+|. +..+.+..+++|+.|++.++. .+..+. ..+++|+.|+++.+.... +.+..+++|+.|++.++.++..
T Consensus 133 ~l~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~---l~l~~l~~L~~L~l~~N~l~~~- 206 (457)
T 3bz5_A 133 NCARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKL- 206 (457)
T ss_dssp ECTTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCCC---CCCTTCTTCCEEECCSSCCSCC-
T ss_pred ECCCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccce---eccccCCCCCEEECcCCcCCee-
Confidence 776664 333455566777777777664 222222 256778888887554433 2267788888888888777653
Q ss_pred HHHHhcCCCCCCEEEecCcCChhhhhhcCCccceEeccccc
Q 018106 301 FNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 301 ~~~~~~~~~~L~~L~L~~c~~~~~i~~~~~~L~~L~l~~c~ 341 (360)
-+..+++|++|++++|....--...+++|+.|++.++.
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP 244 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC
T ss_pred ---ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc
Confidence 15677889999988872211013456788888887653
No 46
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.12 E-value=3.9e-10 Score=100.40 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=109.6
Q ss_pred ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEec
Q 018106 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~ 246 (360)
.+++|+.|++.+|.+........+++|++|.++++.+++-. . +..+++|+.|++.+|.....-.+..+++|+.|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence 46778888888877665444566788888888888774322 1 67788888888887764333335566788888888
Q ss_pred ccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--Chh
Q 018106 247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPG 323 (360)
Q Consensus 247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~ 323 (360)
++. ..+.. ...+++|+.|+++.+..... ..+..+++|+.|+++++.+++... +..+++|++|++++|. .+.
T Consensus 121 ~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 121 HNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG
T ss_pred CCcCCCChh-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh
Confidence 776 22221 23577888888885544332 345677888888888777765322 6677888888888772 222
Q ss_pred hhhhcCCccceEeccccc
Q 018106 324 KIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 324 ~i~~~~~~L~~L~l~~c~ 341 (360)
. ...+++|+.|++.++.
T Consensus 195 ~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 195 A-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp G-GTTCTTCSEEEEEEEE
T ss_pred h-hccCCCCCEEECcCCc
Confidence 2 3456778888887653
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.11 E-value=1.2e-10 Score=110.29 Aligned_cols=84 Identities=14% Similarity=0.004 Sum_probs=55.6
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC----CccCCCCCCEEEeeeEEeChHHHHHHHhcCCc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCLDEQMVQKLASECPL 217 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 217 (360)
.++++|+ +..+.. ....|..+..+++|++|++.+|.+.... ....+++|++|.++++.++......++..+++
T Consensus 79 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 79 SSLIILK--LDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCCEEE--CTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred ccCCEEe--CCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 5788888 543322 1223445566788888888888775311 25567888888888887743333334677888
Q ss_pred ccEEEeecCCC
Q 018106 218 LEDLCFSNCWG 228 (360)
Q Consensus 218 Le~L~l~~c~~ 228 (360)
|++|++.+|..
T Consensus 156 L~~L~L~~n~l 166 (455)
T 3v47_A 156 FHVLDLTFNKV 166 (455)
T ss_dssp CCEEECTTCCB
T ss_pred ccEEeCCCCcc
Confidence 99998887753
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=1.1e-10 Score=111.73 Aligned_cols=167 Identities=15% Similarity=0.064 Sum_probs=99.6
Q ss_pred ccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccE
Q 018106 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKI 242 (360)
Q Consensus 165 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~ 242 (360)
+..+++|++|++++|.+.. ....++|++|.++++.++... ...+|+|+.|++.+|..... ..+..+++|+.
T Consensus 76 l~~l~~L~~L~Ls~N~l~~---l~~~~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 148 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (487)
T ss_dssp CTTCTTCCEEECCSSEEEE---EEECTTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred cccCCCCCEEEecCCcCCC---CCCCCCcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence 4446667777776666552 223366777777666653221 12357777777777654322 23345678888
Q ss_pred EEecccc-ch--hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 243 MEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 243 L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
|+++++. .. ...+.-.+++|+.|+++.+..... .....+++|+.|+++++.+++-. . .+..+++|+.|+|++|
T Consensus 149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~-~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG-P-EFQSAAGVTWISLRNN 224 (487)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC-G-GGGGGTTCSEEECTTS
T ss_pred EECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCC-H-hHcCCCCccEEEecCC
Confidence 8888776 11 122222567888888885444322 22345788888888887776521 1 2556788888888887
Q ss_pred CC--hhhhhhcCCccceEecccccc
Q 018106 320 CL--PGKIKISSNQLKNLLFRSCKY 342 (360)
Q Consensus 320 ~~--~~~i~~~~~~L~~L~l~~c~~ 342 (360)
.. +......+++|+.|++.++..
T Consensus 225 ~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 225 KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred cCcccchhhccCCCCCEEEcCCCCC
Confidence 32 122233457788888877643
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.10 E-value=1.5e-10 Score=113.70 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=83.4
Q ss_pred ccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEE
Q 018106 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (360)
Q Consensus 165 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 244 (360)
+..+++|+.|++.++.+........+++|++|.+.++.++ .+..+ .+|+|++|++.+|.......+..+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 3446788888888877654434556677888888887762 22222 6788888888877655555555667777777
Q ss_pred ecccc-chh---hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 245 IRSFS-EEI---EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 245 l~~~~-~~~---~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
++++. ... ......+++|++|+++.+.... ....+..+++|+.|++.++.+........+..+++|++|++++|
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 77665 111 2223356667777766433211 11233445555555555444333211112333444444444444
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.09 E-value=3.4e-10 Score=104.99 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=39.2
Q ss_pred cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceE
Q 018106 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNL 335 (360)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L 335 (360)
.+|+|++|+++.+......+..+..+++|+.|+++++.++.- ......+++|++|++++|.. +......+++|+.|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence 455666666664433322233345566666666665554431 11123456666666666521 11112234556666
Q ss_pred ecccc
Q 018106 336 LFRSC 340 (360)
Q Consensus 336 ~l~~c 340 (360)
++.++
T Consensus 324 ~L~~N 328 (390)
T 3o6n_A 324 YLDHN 328 (390)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 66554
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.08 E-value=1.8e-10 Score=109.04 Aligned_cols=192 Identities=15% Similarity=0.092 Sum_probs=134.0
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
.+++.|+ +....... ..+..+..+++|++|+|.++.+.... ....+++|++|.|+++.++.-. ...+..+++|+
T Consensus 75 ~~l~~L~--L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLN--LMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEE--CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCC
T ss_pred CCccEEE--CcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCC
Confidence 4788888 54332221 22334556899999999998765322 4567899999999998874222 12356789999
Q ss_pred EEEeecCCCCC--ccccccCCCccEEEeccccchhhhH----hhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106 220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (360)
Q Consensus 220 ~L~l~~c~~~~--~~~i~~l~~L~~L~l~~~~~~~~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (360)
+|++.+|.... ...+..+++|+.|++.++. .+..+ ...+++|++|+++.+..... ..+..+++|+.|++++
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSG 227 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTT
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcC
Confidence 99999886422 1224467999999999876 33322 23678999999996554332 2467889999999999
Q ss_pred cccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106 294 VYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~ 341 (360)
+.++... ...+..+++|++|++++|... ......+++|+.|+++++.
T Consensus 228 N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 228 NHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp SCCSEEC-GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcCcccC-cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 8876532 334778999999999998322 2234567899999998773
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.08 E-value=1.7e-10 Score=113.18 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=82.1
Q ss_pred ccccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc---ccccCCCc
Q 018106 165 IFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKL 240 (360)
Q Consensus 165 l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~l~~L 240 (360)
+..+++|++|++.++.+...+ ....+++|++|.++++.+..... ..+..+|+|+.|++.+|.....+ .+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 445799999999998876433 45678999999999998753322 23678999999999998653222 24456788
Q ss_pred cEEEecccc-chh---hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 241 KIMEIRSFS-EEI---EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 241 ~~L~l~~~~-~~~---~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
+.|++.++. ... ......+++|++|+++.+.........+..+++|+.|++.++.+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 888887765 111 11123566777777764433222222334445555555544443
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.08 E-value=2e-10 Score=103.51 Aligned_cols=186 Identities=14% Similarity=0.041 Sum_probs=112.5
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
++++.|+ +..+.... .+. +..+++|++|++++|.+.. ....++|++|.++++.++... ...+++|++|
T Consensus 58 ~~L~~L~--Ls~n~l~~--~~~-~~~l~~L~~L~Ls~n~l~~---l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L 125 (317)
T 3o53_A 58 TKLELLN--LSSNVLYE--TLD-LESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKKNI 125 (317)
T ss_dssp TTCCEEE--CTTSCCEE--EEE-ETTCTTCCEEECCSSEEEE---EEECTTCCEEECCSSCCSEEE----ECCCSSCEEE
T ss_pred CcCCEEE--CCCCcCCc--chh-hhhcCCCCEEECcCCcccc---ccCCCCcCEEECCCCccCCcC----ccccCCCCEE
Confidence 5677777 43322211 111 4456777777777776653 223477777777777653222 1246778888
Q ss_pred EeecCCCCCc--cccccCCCccEEEecccc-ch--hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 222 CFSNCWGLKH--LCVSKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 222 ~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
++.+|..... ..+..+++|+.|+++++. .. ...+.-.+++|++|+++.+..... .....+++|+.|+++++.+
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcC
Confidence 8877754321 233456888888888776 11 122223568888888885543221 2233578899999988877
Q ss_pred CcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEeccccccc
Q 018106 297 ADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSCKYL 343 (360)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c~~l 343 (360)
+.-. ..+..+++|++|++++|.. +......+++|+.|++.++...
T Consensus 204 ~~l~--~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 204 AFMG--PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEEC--GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred Ccch--hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 6521 1256778899999988722 2222345678899988876543
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.08 E-value=2.5e-10 Score=112.02 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=36.6
Q ss_pred cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceE
Q 018106 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNL 335 (360)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L 335 (360)
.+|+|+.|+++.+......+..+..+++|+.|+++++.++.- ......+|+|++|+|++|.. +......+++|+.|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 345555555554333222223344555555555555544331 11123355566666655521 11112234555555
Q ss_pred ecccc
Q 018106 336 LFRSC 340 (360)
Q Consensus 336 ~l~~c 340 (360)
+++++
T Consensus 330 ~L~~N 334 (597)
T 3oja_B 330 YLDHN 334 (597)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55544
No 55
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.07 E-value=2.6e-10 Score=111.60 Aligned_cols=163 Identities=17% Similarity=0.090 Sum_probs=86.7
Q ss_pred cCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecc
Q 018106 168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 247 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~ 247 (360)
.++|+.|++.++.+........+++|+.|.|+++.+..-.. +..+++|+.|+|.+|.....-.+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence 45666666666655543344556666666666665532111 456666666666666432222344456666666666
Q ss_pred cc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--Chhh
Q 018106 248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPGK 324 (360)
Q Consensus 248 ~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~~ 324 (360)
+. ..+.. ...+|+|+.|.++.+..... ..+..+++|+.|+|+++.+.+... +..+++|+.|+|++|. .+.
T Consensus 119 N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~- 191 (605)
T 1m9s_A 119 NGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR- 191 (605)
T ss_dssp SCCCCCGG-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-
T ss_pred CCCCCCcc-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh-
Confidence 54 11111 22456666666664433221 234566666666666665554321 4556666666666651 111
Q ss_pred hhhcCCccceEecccc
Q 018106 325 IKISSNQLKNLLFRSC 340 (360)
Q Consensus 325 i~~~~~~L~~L~l~~c 340 (360)
....+++|+.|++.++
T Consensus 192 ~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GGTTCTTCSEEECCSE
T ss_pred HHccCCCCCEEEccCC
Confidence 1234556666666654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.07 E-value=1.7e-10 Score=108.92 Aligned_cols=192 Identities=13% Similarity=0.081 Sum_probs=131.9
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
.+++.|+ +........ .+..+..+++|++|+|.+|.+.... ....+++|++|.|+++.++.-. ...+..+++|+
T Consensus 64 ~~l~~L~--L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLN--LHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEE--CCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCC
T ss_pred CCCcEEE--ccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCc
Confidence 4778888 544332221 1234556899999999998765332 4567899999999998774221 12356789999
Q ss_pred EEEeecCCCCC--ccccccCCCccEEEeccccchhhhH----hhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106 220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (360)
Q Consensus 220 ~L~l~~c~~~~--~~~i~~l~~L~~L~l~~~~~~~~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (360)
+|++.++.... ...+..+++|+.|++.++. .+..+ ...+++|++|+++.+....- ..+..+++|+.|++++
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSG 216 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTT
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECCC
Confidence 99999886422 1234567899999999865 22222 23678999999996554321 2467889999999999
Q ss_pred cccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106 294 VYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~ 341 (360)
+.++... ...+..+++|++|+|.+|... ......+++|+.|+++++.
T Consensus 217 N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 217 NHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp SCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred CccCccC-hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 8876532 334678899999999998322 2233467899999998763
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.06 E-value=6.3e-10 Score=105.47 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=100.8
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
.++++|+ +..+..... + +..+++|++|++.++.+.... ...+++|++|.++++.++.- . +..+++|++|
T Consensus 85 ~~L~~L~--Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L 153 (457)
T 3bz5_A 85 TNLTYLA--CDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL 153 (457)
T ss_dssp TTCSEEE--CCSSCCSCC--C--CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred CCCCEEE--CcCCCCcee--e--cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence 5788888 544333222 2 556788999999888776542 56778888888888877432 1 5678888888
Q ss_pred EeecCCCCCccccccCCCccEEEeccccchhhhH-hhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHH
Q 018106 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (360)
Q Consensus 222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (360)
++.+|..++.+.+..+++|+.|+++++. +..+ ...+++|+.|.+..+..... .+..+++|+.|+++++.++.-
T Consensus 154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i- 227 (457)
T 3bz5_A 154 DCHLNKKITKLDVTPQTQLTTLDCSFNK--ITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI- 227 (457)
T ss_dssp ECTTCSCCCCCCCTTCTTCCEEECCSSC--CCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-
T ss_pred ECCCCCcccccccccCCcCCEEECCCCc--cceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-
Confidence 8888866666666667778888877765 1112 22456677777664433221 355666666666666665541
Q ss_pred HHHHhcCCCCCCEEEecCc
Q 018106 301 FNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 301 ~~~~~~~~~~L~~L~L~~c 319 (360)
. +..+++|++|++++|
T Consensus 228 -p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 228 -D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp -C--CTTCTTCSEEECCSS
T ss_pred -C--ccccCCCCEEEeeCC
Confidence 1 445566666666655
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.06 E-value=6.4e-11 Score=106.58 Aligned_cols=173 Identities=18% Similarity=0.120 Sum_probs=77.0
Q ss_pred ccCCccEEEEeeeeccCCC--Cc--cCCCCCCEEEeeeEEeChH--HHHHHHh-cCCcccEEEeecCCCCCc--cccccC
Q 018106 167 SANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQ--MVQKLAS-ECPLLEDLCFSNCWGLKH--LCVSKA 237 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~--~~--~~~~~L~~L~L~~~~~~~~--~l~~l~~-~cp~Le~L~l~~c~~~~~--~~i~~l 237 (360)
..++|++|++.+|.+.... .. ..+++|++|.++++.++.. .+..+.. ..++|++|++.+|..... -.+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3556666666666554221 11 4556666666666655322 1221110 125666666666543221 123345
Q ss_pred CCccEEEecccc-chhh----hHh-hcCCCccEEEEEeecCCCc--c-eeeccCCCCccEEEeeccccCcHHHHHHhcCC
Q 018106 238 SKLKIMEIRSFS-EEIE----IVE-ISVPSLQQLTLLFYGARRP--R-VVEVARSPHLKKLDLVSVYFADNEFNHLISKF 308 (360)
Q Consensus 238 ~~L~~L~l~~~~-~~~~----~~~-~~~p~L~~L~l~~~~~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 308 (360)
++|+.|+++++. .... .+. ..+++|++|+++.+..... . ...+..+++|+.|+++++.+++......+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 566666666554 1100 110 2445666666654333210 0 01123455666666665555442111122334
Q ss_pred CCCCEEEecCcCChhhhhhc-CCccceEecccc
Q 018106 309 PSLEDLFVTRCCLPGKIKIS-SNQLKNLLFRSC 340 (360)
Q Consensus 309 ~~L~~L~L~~c~~~~~i~~~-~~~L~~L~l~~c 340 (360)
++|++|++++|... .+... .++|+.|+++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N 284 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYN 284 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCCSEEEEEECCSS
T ss_pred CCCCEEECCCCccC-hhhhhccCCceEEECCCC
Confidence 56666666655211 22111 145666665544
No 59
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.05 E-value=3.2e-10 Score=94.84 Aligned_cols=147 Identities=16% Similarity=0.096 Sum_probs=105.7
Q ss_pred ccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecccc-ch-hhhHhhcCCCccE
Q 018106 187 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EE-IEIVEISVPSLQQ 264 (360)
Q Consensus 187 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~-~~~~~~~~p~L~~ 264 (360)
...+++|++|.++++.+++-. . +..+++|++|++.+|.....-.+..+++|++|++.++. .. .......+|+|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT--G-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT--T-GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccChH--H-HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 356789999999998875211 2 67899999999999944333355678999999999876 11 1111236789999
Q ss_pred EEEEeecCCCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEecccc
Q 018106 265 LTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 265 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c 340 (360)
|+++.+.........+..+++|+.|+++++. +++- . .+..+++|++|++++|.. .. ....+++|+.|++.+.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 9999666554444557788999999998886 6553 2 467889999999998832 22 3446788999888764
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.04 E-value=4.2e-10 Score=99.01 Aligned_cols=171 Identities=18% Similarity=0.080 Sum_probs=116.5
Q ss_pred CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEE
Q 018106 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME 244 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~ 244 (360)
++|+.|++.++.+.... ....+++|++|.++++.++.-. ...+..+++|++|++.++..... -.+..+++|+.|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 67899999998876443 3567889999999988764211 22356789999999998764221 1234578999999
Q ss_pred ecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC-
Q 018106 245 IRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL- 321 (360)
Q Consensus 245 l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~- 321 (360)
+.++. ..+. .....+++|++|+++.+.........+..+++|+.|++.++.++.-. ...+..+++|++|+|++|..
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCcCC
Confidence 98875 1221 11236789999999865544333333677899999999888765521 22356789999999998722
Q ss_pred --hhhhhhcCCccceEeccccc
Q 018106 322 --PGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 322 --~~~i~~~~~~L~~L~l~~c~ 341 (360)
.......+++|+.|++.+.+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCHHHhccccCCCEEEecCCC
Confidence 22233457789999987654
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.03 E-value=1.5e-10 Score=104.17 Aligned_cols=192 Identities=19% Similarity=0.086 Sum_probs=131.1
Q ss_pred HHcCceEEEeecccCCCccccCcccc--cccCCccEEEEeeeeccCCC-CccCC-----CCCCEEEeeeEEeChHHHHHH
Q 018106 140 VENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF-DSIML-----CSLKKLTLERVCLDEQMVQKL 211 (360)
Q Consensus 140 ~~~~l~~L~~~l~~~~~~~~~l~~~l--~~~~~L~~L~L~~~~~~~~~-~~~~~-----~~L~~L~L~~~~~~~~~l~~l 211 (360)
...++++|+ +..+.. ...+|..+ ...++|++|++.++.+...+ ....+ ++|++|.++++.++..... .
T Consensus 93 ~l~~L~~L~--L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~ 168 (312)
T 1wwl_A 93 GISGLQELT--LENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-Q 168 (312)
T ss_dssp TTSCCCEEE--EEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-T
T ss_pred CcCCccEEE--ccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-H
Confidence 347899999 543322 22344444 56899999999999876542 11223 8999999999987433222 2
Q ss_pred HhcCCcccEEEeecCCCCCcc------ccccCCCccEEEecccc-chhhhH----hhcCCCccEEEEEeecCCCcce-ee
Q 018106 212 ASECPLLEDLCFSNCWGLKHL------CVSKASKLKIMEIRSFS-EEIEIV----EISVPSLQQLTLLFYGARRPRV-VE 279 (360)
Q Consensus 212 ~~~cp~Le~L~l~~c~~~~~~------~i~~l~~L~~L~l~~~~-~~~~~~----~~~~p~L~~L~l~~~~~~~~~~-~~ 279 (360)
+..+++|++|++.+|...+.. ....+++|+.|+++++. ..+..+ ...+++|++|+++.+......+ ..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 568999999999998754321 22567999999999987 222222 2367899999999665544332 33
Q ss_pred ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC--ChhhhhhcCCccceEecccc
Q 018106 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~~i~~~~~~L~~L~l~~c 340 (360)
+..+++|+.|+++++.++. +...+ .++|++|++++|. .... ....++|+.|++.+.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~--ip~~~--~~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQ--VPKGL--PAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCCCTTCCEEECTTSCCSS--CCSSC--CSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred hhhcCCCCEEECCCCccCh--hhhhc--cCCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 4567999999999988762 12111 1799999999982 2222 446788999998765
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.02 E-value=2.8e-10 Score=101.24 Aligned_cols=188 Identities=18% Similarity=0.135 Sum_probs=124.1
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
.++++++ +.. ..-..+|..+ .++|+.|++.++.+.... ....+++|++|.++++.++.-.. ...+++|+
T Consensus 10 ~~l~~l~--~~~--~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~ 80 (290)
T 1p9a_G 10 ASHLEVN--CDK--RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLG 80 (290)
T ss_dssp TTCCEEE--CTT--SCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCC
T ss_pred CCccEEE--CCC--CCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCC
Confidence 3566666 432 2223444433 268999999998865322 45678999999999987742211 16789999
Q ss_pred EEEeecCCCCCccc--cccCCCccEEEecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc
Q 018106 220 DLCFSNCWGLKHLC--VSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 295 (360)
Q Consensus 220 ~L~l~~c~~~~~~~--i~~l~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (360)
.|++.++.. ..+. +..+++|+.|+++++. ..+. ...-.+++|++|.++.+.........+..+++|+.|+++++.
T Consensus 81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999998754 2222 3457899999999886 2221 122367899999998655543333345678999999999888
Q ss_pred cCcHHHHHHhcCCCCCCEEEecCcC--ChhhhhhcCCccceEecccc
Q 018106 296 FADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~L~~c~--~~~~i~~~~~~L~~L~l~~c 340 (360)
++.- ....+..+++|++|+|++|. .+..-....++|+.|.+.+.
T Consensus 160 l~~l-~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 160 LTEL-PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CSCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred CCcc-CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 7642 23345678999999999872 22222234567999998754
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.02 E-value=5.5e-10 Score=101.16 Aligned_cols=191 Identities=11% Similarity=0.069 Sum_probs=128.8
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChH-HHHHHHhcCCcc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQ-MVQKLASECPLL 218 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~cp~L 218 (360)
+++++|+ +...... .+|..++ ++|++|++.++.+.... ....+++|+.|.++++.++.. .....+..+++|
T Consensus 100 ~~L~~L~--Ls~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 100 VKLERLY--LSKNQLK--ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTCCEEE--CCSSCCS--BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCCCEEE--CCCCcCC--ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 6899999 6443222 4444333 79999999998876443 346789999999999887532 222346789999
Q ss_pred cEEEeecCCCCCccccccCCCccEEEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 219 e~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
++|++.++.. ..+...-.++|+.|++.++. ... ......+++|++|+++.+.........+..+++|+.|+++++.+
T Consensus 174 ~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 174 SYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred CEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 9999998864 33332223799999999886 122 12233678999999996554333233467789999999998887
Q ss_pred CcHHHHHHhcCCCCCCEEEecCcCCh---hhhh------hcCCccceEeccccc
Q 018106 297 ADNEFNHLISKFPSLEDLFVTRCCLP---GKIK------ISSNQLKNLLFRSCK 341 (360)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~------~~~~~L~~L~l~~c~ 341 (360)
+. +...+..+++|++|++++|... .... ...+.|+.|++.+.+
T Consensus 253 ~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 253 VK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SS--CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cc--CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 63 2333567899999999987211 1111 123678888887654
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.01 E-value=5.8e-10 Score=108.49 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=41.1
Q ss_pred cCCCccEEEEEeecCCCcc-eeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh----hhhhhcCCcc
Q 018106 258 SVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP----GKIKISSNQL 332 (360)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~----~~i~~~~~~L 332 (360)
.+++|++|++..+...... ...+..+++|+.|+++++.+... ....+..+++|++|++++|... ......+++|
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 3455555555432221111 12244556666666665554332 1223455666777777666322 1223345677
Q ss_pred ceEeccccc
Q 018106 333 KNLLFRSCK 341 (360)
Q Consensus 333 ~~L~l~~c~ 341 (360)
+.|+++++.
T Consensus 473 ~~L~l~~n~ 481 (570)
T 2z63_A 473 TFLDLSQCQ 481 (570)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 777776653
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.01 E-value=2.3e-10 Score=100.90 Aligned_cols=171 Identities=15% Similarity=0.091 Sum_probs=82.1
Q ss_pred ccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCC--ccccccCCCc
Q 018106 165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKL 240 (360)
Q Consensus 165 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~i~~l~~L 240 (360)
+..+++|++|++.+|.+.... ....+++|++|.++++.++.... ..+..+++|++|++.++.... ...+..+++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 344566777777666544221 23456667777776665532211 124556677777776654322 1224455667
Q ss_pred cEEEecccc-ch--hhhHhhcCCCccEEEEEeecCCCcceeeccCCCCcc----EEEeeccccCcHHHHHHhcCCCCCCE
Q 018106 241 KIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK----KLDLVSVYFADNEFNHLISKFPSLED 313 (360)
Q Consensus 241 ~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~ 313 (360)
+.|+++++. .. +......+++|++|+++.+.........+..+++|+ .|+++++.++.-. .. .....+|++
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~-~~-~~~~~~L~~ 204 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ-PG-AFKEIRLKE 204 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC-TT-SSCSCCEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC-cc-ccCCCcccE
Confidence 777776654 11 122223456666666664433221111222223333 5555555443311 11 112235666
Q ss_pred EEecCcC---ChhhhhhcCCccceEecc
Q 018106 314 LFVTRCC---LPGKIKISSNQLKNLLFR 338 (360)
Q Consensus 314 L~L~~c~---~~~~i~~~~~~L~~L~l~ 338 (360)
|++++|. ....+...+++|+.|++.
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred EECCCCceeecCHhHhcccccccEEEcc
Confidence 6666652 112222345566666665
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.00 E-value=1.6e-09 Score=104.99 Aligned_cols=173 Identities=17% Similarity=0.078 Sum_probs=107.5
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCccc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 219 (360)
+.+++|+ +...... ...+..+..+++|++|++.+|.+.... ....+++|++|+++++.++.... ..+..+++|+
T Consensus 26 ~~L~~L~--Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLD--LSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLK 101 (549)
T ss_dssp TTCCEEE--CCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCC
T ss_pred CCccEEE--CcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCc
Confidence 4677887 5433221 122334556788888888888764322 34567888888888887743332 2357788888
Q ss_pred EEEeecCCCCC-c--cccccCCCccEEEecccc--chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106 220 DLCFSNCWGLK-H--LCVSKASKLKIMEIRSFS--EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (360)
Q Consensus 220 ~L~l~~c~~~~-~--~~i~~l~~L~~L~l~~~~--~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (360)
+|++.+|.... . -.+..+++|+.|++.++. ..+. .....+++|++|++..+......+..+..+++|++|++.+
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 88888875422 1 124456888888888774 1221 1123567888888886555443444566677777777776
Q ss_pred cccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 294 VYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+..... ...++..+++|++|++++|
T Consensus 182 n~~~~~-~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 182 SESAFL-LEIFADILSSVRYLELRDT 206 (549)
T ss_dssp SBSTTH-HHHHHHSTTTBSEEEEESC
T ss_pred Cccccc-chhhHhhcccccEEEccCC
Confidence 655432 2333455777777777776
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.99 E-value=9.9e-10 Score=98.99 Aligned_cols=166 Identities=8% Similarity=-0.058 Sum_probs=71.8
Q ss_pred CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--ccc-ccCCCccEEEe
Q 018106 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCV-SKASKLKIMEI 245 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i-~~l~~L~~L~l 245 (360)
++|+.|++.+|.+.... ...+++|++|.++++.++.-.- ..+..+++|++|++.+|..... ..+ ..+++|+.|++
T Consensus 99 ~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 99 PSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECCCCccCCcC-ccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 55555555555443221 2234555555555555432111 1123455555555555532211 011 12455555555
Q ss_pred cccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh--
Q 018106 246 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP-- 322 (360)
Q Consensus 246 ~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~-- 322 (360)
+++. ..+.. ....++|+.|+++.+.... ....+..+++|+.|+++++.++. +...+..+++|+.|++++|...
T Consensus 177 ~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CCCcCccccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCc
Confidence 5554 11100 1124555555555333221 11124445555555555555442 1222344555555555555322
Q ss_pred --hhhhhcCCccceEecccc
Q 018106 323 --GKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 323 --~~i~~~~~~L~~L~l~~c 340 (360)
.......++|+.|++.++
T Consensus 253 ~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 253 TLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHhccccceEEECCCc
Confidence 122233444555554433
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=1.3e-10 Score=111.18 Aligned_cols=187 Identities=20% Similarity=0.140 Sum_probs=132.3
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
+++++|+ +..+.... ..|..+..+++|++|+|++|.+........+++|++|+|+++.++. +...|+|+.|
T Consensus 34 ~~L~~L~--Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L 104 (487)
T 3oja_A 34 WNVKELD--LSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL 104 (487)
T ss_dssp GGCCEEE--CCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred CCccEEE--eeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence 4899999 65433222 2234566789999999999987643336788999999999998742 2245999999
Q ss_pred EeecCCCCCccccccCCCccEEEecccc-chhhhH-hhcCCCccEEEEEeecCCCcceeec-cCCCCccEEEeeccccCc
Q 018106 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVVEV-ARSPHLKKLDLVSVYFAD 298 (360)
Q Consensus 222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 298 (360)
++.+|.. ..+....+++|+.|+++++. ..+... ...+++|+.|+++.+......+..+ ..+++|+.|+++++.+++
T Consensus 105 ~L~~N~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 105 HAANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ECCSSCC-CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECcCCcC-CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 9999864 43444557899999999886 222221 2357899999999665544333333 368999999999988766
Q ss_pred HHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEeccccc
Q 018106 299 NEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 299 ~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c~ 341 (360)
. . ....+++|++|+|++|.. +..-...+++|+.|+++++.
T Consensus 184 ~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 184 V--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp E--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred c--c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 3 1 123589999999999832 21224467899999998864
No 69
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=2.8e-10 Score=104.60 Aligned_cols=196 Identities=11% Similarity=0.023 Sum_probs=123.9
Q ss_pred CceEEEeecccCCCccccCcccccc----c-CCccEEEEeeeeccCCC------CccCC-CCCCEEEeeeEEeChHHHH-
Q 018106 143 GVRELDFENITDENTVYTLPQAIFS----A-NSVTNLRLVWCRLEQPF------DSIML-CSLKKLTLERVCLDEQMVQ- 209 (360)
Q Consensus 143 ~l~~L~~~l~~~~~~~~~l~~~l~~----~-~~L~~L~L~~~~~~~~~------~~~~~-~~L~~L~L~~~~~~~~~l~- 209 (360)
++++|+ +..+..... .+..+.. . ++|++|++++|.+.... ....+ ++|++|.++++.+++....
T Consensus 52 ~L~~L~--Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLN--LSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp TCCEEE--CCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred ceeEEE--CcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 799999 654432221 1222222 2 89999999999877543 12334 7899999999988544443
Q ss_pred --HHHhc-CCcccEEEeecCCCCCc--cc----cccCC-CccEEEecccc-c--hhhh---HhhcC-CCccEEEEEeecC
Q 018106 210 --KLASE-CPLLEDLCFSNCWGLKH--LC----VSKAS-KLKIMEIRSFS-E--EIEI---VEISV-PSLQQLTLLFYGA 272 (360)
Q Consensus 210 --~l~~~-cp~Le~L~l~~c~~~~~--~~----i~~l~-~L~~L~l~~~~-~--~~~~---~~~~~-p~L~~L~l~~~~~ 272 (360)
..+.. +++|++|++.+|..... .. +...+ +|++|++++|. . .... ..... ++|++|+++.+..
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 33444 56999999998854221 11 12334 99999999886 1 1111 12244 4899999996554
Q ss_pred CCcc----eeeccC-CCCccEEEeeccccCc---HHHHHHhcCCCCCCEEEecCcC---C----hhhhh---hcCCccce
Q 018106 273 RRPR----VVEVAR-SPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDLFVTRCC---L----PGKIK---ISSNQLKN 334 (360)
Q Consensus 273 ~~~~----~~~~~~-~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~L~~c~---~----~~~i~---~~~~~L~~ 334 (360)
.... ...+.. .++|+.|+++++.+++ ..+...+..+++|++|++++|. . ...+. ...++|+.
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence 3311 112233 4699999999988877 4445667788999999999883 1 22222 24556777
Q ss_pred Eeccccc
Q 018106 335 LLFRSCK 341 (360)
Q Consensus 335 L~l~~c~ 341 (360)
|++++..
T Consensus 289 LdL~~N~ 295 (362)
T 3goz_A 289 VDKNGKE 295 (362)
T ss_dssp ECTTSCB
T ss_pred EecCCCc
Confidence 7777654
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=1.2e-09 Score=107.09 Aligned_cols=105 Identities=18% Similarity=0.144 Sum_probs=72.0
Q ss_pred cccCCCccEEEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCC
Q 018106 234 VSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (360)
Q Consensus 234 i~~l~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 311 (360)
+..+++|+.|+++++. ... ......+++|+.|+++.+.... .+..+..+|+|+.|+++++.++. +...+..+++|
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L 326 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRL 326 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTC
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc--cCcccccCCCC
Confidence 3456788888888776 111 1223367899999999554432 34445678999999999988764 22224568999
Q ss_pred CEEEecCcCChhhhhhcCCccceEeccccc
Q 018106 312 EDLFVTRCCLPGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 312 ~~L~L~~c~~~~~i~~~~~~L~~L~l~~c~ 341 (360)
++|+|++|.....-...+++|+.|+++++.
T Consensus 327 ~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 327 ENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred CEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 999999984333224567899999998764
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.98 E-value=2.1e-09 Score=99.61 Aligned_cols=60 Identities=22% Similarity=0.179 Sum_probs=34.3
Q ss_pred ccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC--hhhhhhcCCccceEecccc
Q 018106 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSC 340 (360)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~i~~~~~~L~~L~l~~c 340 (360)
+..+++|+.|+++++.++... ...+..+++|++|++++|.. +.......++|+.|+++++
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred HcCCCCccEEECCCCcCCCcC-hhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence 455667777777666654421 22345567777777776621 1112234567777777766
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.98 E-value=7.6e-10 Score=110.17 Aligned_cols=127 Identities=18% Similarity=0.053 Sum_probs=68.0
Q ss_pred HhcCCcccEEEeecCCCCCc--cccccCCCccEEEeccccchhhhH------------hhcCCCccEEEEEeecCCCcce
Q 018106 212 ASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIV------------EISVPSLQQLTLLFYGARRPRV 277 (360)
Q Consensus 212 ~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~~~~~~~------------~~~~p~L~~L~l~~~~~~~~~~ 277 (360)
+..+++|+.|++.+|..... ..+.++++|+.|+++++. +..+ ...+++|+.|+++.+....-..
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN--LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC--ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 34555666666655532111 112345667777766654 1111 1245667777776444332111
Q ss_pred eeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC---hhhhhh-cCCccceEeccccc
Q 018106 278 VEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL---PGKIKI-SSNQLKNLLFRSCK 341 (360)
Q Consensus 278 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~---~~~i~~-~~~~L~~L~l~~c~ 341 (360)
..+..+++|+.|+++++.++.- ....+..+++|++|++++|.. ...... .+++|+.|++.+++
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred HHcccccCcceeECCCCCCCcC-CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 2356677777777777666531 222345677788888877621 112222 46778888877643
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.97 E-value=6.5e-10 Score=96.68 Aligned_cols=157 Identities=14% Similarity=0.057 Sum_probs=107.5
Q ss_pred ccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--ccc
Q 018106 159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCV 234 (360)
Q Consensus 159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i 234 (360)
..+|..+. ++|+.|++.++.+.... ....+++|++|.++++.++.... ..+..+++|++|++.++..... -.+
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 103 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANNQLASLPLGVF 103 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCCCcccccChhHh
Confidence 34444332 68999999998876443 35678999999999988743221 2356789999999998764321 123
Q ss_pred ccCCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCC
Q 018106 235 SKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE 312 (360)
Q Consensus 235 ~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 312 (360)
..+++|+.|+++++. ..+.. ....+++|+.|+++.+.........+..+++|+.|+++++.++.. ....+..+++|+
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~ 182 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQ 182 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCC
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCC
Confidence 457899999998886 22211 123578899999986655433333467789999999988877643 223456788999
Q ss_pred EEEecCc
Q 018106 313 DLFVTRC 319 (360)
Q Consensus 313 ~L~L~~c 319 (360)
+|++.+|
T Consensus 183 ~L~l~~N 189 (251)
T 3m19_A 183 TITLFGN 189 (251)
T ss_dssp EEECCSC
T ss_pred EEEeeCC
Confidence 9999887
No 74
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.95 E-value=3.5e-10 Score=73.00 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=34.1
Q ss_pred ccccccCCchHHHHHHhcCCChhhhhhhcccccchhhhhc
Q 018106 16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV 55 (360)
Q Consensus 16 ~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~~ 55 (360)
+.+.++.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999999999998654
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.95 E-value=5.5e-10 Score=101.28 Aligned_cols=82 Identities=10% Similarity=-0.028 Sum_probs=45.8
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
+++++|+ +..+... ...+..+..+++|++|++.++.+...+ ...+++|++|.++++.++.-. ...+..+++|+.|
T Consensus 78 ~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L 152 (332)
T 2ft3_A 78 QHLYALV--LVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIP-PNLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCI 152 (332)
T ss_dssp TTCCEEE--CCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCC-SSCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEE
T ss_pred CCCcEEE--CCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccC-ccccccCCEEECCCCccCccC-HhHhCCCccCCEE
Confidence 4677777 4332211 122334455677777777777665322 122367777777777663211 1224667777777
Q ss_pred EeecCCC
Q 018106 222 CFSNCWG 228 (360)
Q Consensus 222 ~l~~c~~ 228 (360)
++.++..
T Consensus 153 ~l~~n~l 159 (332)
T 2ft3_A 153 EMGGNPL 159 (332)
T ss_dssp ECCSCCC
T ss_pred ECCCCcc
Confidence 7776643
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.95 E-value=2.7e-09 Score=98.00 Aligned_cols=197 Identities=17% Similarity=0.104 Sum_probs=129.7
Q ss_pred cCceEEEeecccCCCccccC---cccccccC-CccEEEEeeeeccCCC--CccC-----CCCCCEEEeeeEEeCh---HH
Q 018106 142 NGVRELDFENITDENTVYTL---PQAIFSAN-SVTNLRLVWCRLEQPF--DSIM-----LCSLKKLTLERVCLDE---QM 207 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l---~~~l~~~~-~L~~L~L~~~~~~~~~--~~~~-----~~~L~~L~L~~~~~~~---~~ 207 (360)
.++++|+ +..+....... ...+...+ +|++|++++|.+.... .... +++|++|+++++.+++ ..
T Consensus 22 ~~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLD--LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TTCCEEE--CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCceEEE--ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4599999 65443322211 13344566 8999999999887553 1112 3899999999999843 34
Q ss_pred HHHHHhcC-CcccEEEeecCCCCCcccc-------cc-CCCccEEEecccc-c--hhhhH---hhcCC-CccEEEEEeec
Q 018106 208 VQKLASEC-PLLEDLCFSNCWGLKHLCV-------SK-ASKLKIMEIRSFS-E--EIEIV---EISVP-SLQQLTLLFYG 271 (360)
Q Consensus 208 l~~l~~~c-p~Le~L~l~~c~~~~~~~i-------~~-l~~L~~L~l~~~~-~--~~~~~---~~~~p-~L~~L~l~~~~ 271 (360)
+...+..+ ++|++|++.+|.. +.... .. .++|++|++++|. . ....+ ....+ +|++|+++.+.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 55556666 8999999999874 32221 12 2599999999886 1 11222 12344 89999999665
Q ss_pred CCCccee----eccCC-CCccEEEeeccccCcHH---HHHHhcC-CCCCCEEEecCcCCh-------hhhhhcCCccceE
Q 018106 272 ARRPRVV----EVARS-PHLKKLDLVSVYFADNE---FNHLISK-FPSLEDLFVTRCCLP-------GKIKISSNQLKNL 335 (360)
Q Consensus 272 ~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~---~~~~~~~-~~~L~~L~L~~c~~~-------~~i~~~~~~L~~L 335 (360)
....... .+..+ ++|+.|+++++.+++.. +...+.. .++|++|+|++|... ..+....++|+.|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 5333222 23445 59999999999887733 3333333 469999999998321 1223466899999
Q ss_pred eccccc
Q 018106 336 LFRSCK 341 (360)
Q Consensus 336 ~l~~c~ 341 (360)
+++++.
T Consensus 259 ~L~~n~ 264 (362)
T 3goz_A 259 YLDYDI 264 (362)
T ss_dssp EEEHHH
T ss_pred EeccCC
Confidence 999885
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.94 E-value=7.3e-10 Score=95.56 Aligned_cols=173 Identities=15% Similarity=0.035 Sum_probs=93.5
Q ss_pred ccccCCccEEEEeeee-ccCCC--CccCCCCCCEEEeee-EEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCc
Q 018106 165 IFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLER-VCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKL 240 (360)
Q Consensus 165 l~~~~~L~~L~L~~~~-~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L 240 (360)
+..+++|++|++.++. +.... ....+++|++|.+++ +.++.-. ...+..+++|++|++.+|.....-.+..+++|
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L 129 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCSCCCCTTCCBC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcccccccccccc
Confidence 3446777888877775 43221 345677778887776 4443111 11245677788888777653221113344555
Q ss_pred c---EEEeccc-c-chhhh-HhhcCCCcc-EEEEEeecCCCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcCC-CCC
Q 018106 241 K---IMEIRSF-S-EEIEI-VEISVPSLQ-QLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKF-PSL 311 (360)
Q Consensus 241 ~---~L~l~~~-~-~~~~~-~~~~~p~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~-~~L 311 (360)
+ .|+++++ . ..+.. ....+++|+ +|+++.+... ..+...-..++|+.|++.++. ++.- ....+..+ ++|
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L 207 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGP 207 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEE-CTTTTTTCSBCC
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccC-CHHHhhccccCC
Confidence 5 7777766 3 11111 122466777 7777644332 111111122677888887763 5431 12235566 778
Q ss_pred CEEEecCcCChhhhh-hcCCccceEeccccc
Q 018106 312 EDLFVTRCCLPGKIK-ISSNQLKNLLFRSCK 341 (360)
Q Consensus 312 ~~L~L~~c~~~~~i~-~~~~~L~~L~l~~c~ 341 (360)
++|+++++.. ..+. ...++|+.|++.++.
T Consensus 208 ~~L~l~~N~l-~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 208 SLLDVSQTSV-TALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp SEEECTTCCC-CCCCCTTCTTCSEEECTTC-
T ss_pred cEEECCCCcc-ccCChhHhccCceeeccCcc
Confidence 8888877622 1221 245677777776654
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.94 E-value=9.6e-10 Score=95.58 Aligned_cols=131 Identities=19% Similarity=0.120 Sum_probs=70.3
Q ss_pred ccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCC
Q 018106 165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASK 239 (360)
Q Consensus 165 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~ 239 (360)
+..+++|++|++.++.+.... ....+++|++|.++++.++.-.. ..+..+++|++|++.++.. ..+. +..+++
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~ 132 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTK 132 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh-hHhcccCCCCEEEcCCCcC-CCcChhHhccCCc
Confidence 344667777777776654332 23456677777776666532111 2245566777777766643 2211 234567
Q ss_pred ccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106 240 LKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (360)
Q Consensus 240 L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (360)
|+.|+++++. ..+.. ..-.+++|+.|++..+.........+..+++|+.|++.++.+.
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 7777776664 11111 1124566777777644443322234456667777777666553
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.94 E-value=7.7e-10 Score=98.42 Aligned_cols=171 Identities=15% Similarity=0.010 Sum_probs=119.3
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
.+++.|+ +....... ..+..+...++|++|++.++.+........+++|++|.++++.++ .+...+..+++|+.|
T Consensus 31 ~~l~~L~--L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILH--LSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVL 105 (290)
T ss_dssp TTCCEEE--CTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEE
T ss_pred CCCCEEE--cCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEE
Confidence 5788888 64433221 123345568999999999988764433467899999999999874 222345788999999
Q ss_pred EeecCCCCCc--cccccCCCccEEEecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106 222 CFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (360)
Q Consensus 222 ~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (360)
++.++..... -.+..+++|+.|.++++. ..+. ......++|+.|+++.+....-....+..+++|+.|+++++.++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 9998864322 224567899999999886 2221 11236789999999966554333334577899999999998876
Q ss_pred cHHHHHHhcCCCCCCEEEecCc
Q 018106 298 DNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~L~~c 319 (360)
. +...+...++|++|+|.++
T Consensus 186 ~--ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 186 T--IPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp C--CCTTTTTTCCCSEEECCSC
T ss_pred c--cChhhcccccCCeEEeCCC
Confidence 3 2223445678999999987
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.93 E-value=2e-09 Score=106.29 Aligned_cols=147 Identities=13% Similarity=0.101 Sum_probs=81.1
Q ss_pred CCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcccccc----------CCCccEEEecccc-chhhhHhh-
Q 018106 190 LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK----------ASKLKIMEIRSFS-EEIEIVEI- 257 (360)
Q Consensus 190 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----------l~~L~~L~l~~~~-~~~~~~~~- 257 (360)
+++|++|.++++.++ .....++..+++|++|++.+|... .+.... +++|+.|+++++. ..+.....
T Consensus 432 ~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 432 GINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 346666666666654 111233455677777777766432 222111 1277777777765 22221122
Q ss_pred -cCCCccEEEEEeecCCCcceeeccCCCCccEEEeec------cccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh-cC
Q 018106 258 -SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS------VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-SS 329 (360)
Q Consensus 258 -~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~-~~ 329 (360)
.+++|+.|+++.+.... .+..+..+++|+.|++++ +.+... +...+..+++|++|+|++|.. ..+.. ..
T Consensus 510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 56777777777554443 444566677777777743 333222 122345677788888877733 22221 23
Q ss_pred CccceEeccccc
Q 018106 330 NQLKNLLFRSCK 341 (360)
Q Consensus 330 ~~L~~L~l~~c~ 341 (360)
++|+.|++++++
T Consensus 587 ~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 PNISVLDIKDNP 598 (636)
T ss_dssp TTCCEEECCSCT
T ss_pred CcCCEEECcCCC
Confidence 677788777764
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.93 E-value=1.6e-09 Score=104.32 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=7.9
Q ss_pred HHHHHHHHcCceEEE
Q 018106 134 RWIRLAVENGVRELD 148 (360)
Q Consensus 134 ~~l~~~~~~~l~~L~ 148 (360)
.+.......++++++
T Consensus 239 ~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 239 RILQLVWHTTVWYFS 253 (520)
T ss_dssp HHHHHHHTSSCSEEE
T ss_pred HHHHHhhhCcccEEE
Confidence 333333345677777
No 82
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.93 E-value=8.2e-10 Score=109.11 Aligned_cols=177 Identities=9% Similarity=0.022 Sum_probs=100.1
Q ss_pred Cccccc--ccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEE-eChHHHHHHHh------cCCcccEEEeecCCCC
Q 018106 161 LPQAIF--SANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVC-LDEQMVQKLAS------ECPLLEDLCFSNCWGL 229 (360)
Q Consensus 161 l~~~l~--~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~------~cp~Le~L~l~~c~~~ 229 (360)
+|..+. .+++|++|++.+|.+... .....+++|++|.++++. ++...+..-+. .+++|++|++.+|...
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 788888 899999999999875432 245678999999999997 66522322222 3588888888887643
Q ss_pred Ccc----ccccCCCccEEEecccc-c-hhhhHhhcCCCccEEEEEeecCCCcceeeccCCC-------------------
Q 018106 230 KHL----CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSP------------------- 284 (360)
Q Consensus 230 ~~~----~i~~l~~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~------------------- 284 (360)
.+ .+..+++|+.|++.++. . .+. ....+++|+.|+++.+... ..+..+..++
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchh
Confidence 32 24456777777777665 1 121 1113344555555422211 1111122333
Q ss_pred -------CccEEEeeccccCcHHHHHHhc-------CCCCCCEEEecCcCC---hhhhhhcCCccceEeccccc
Q 018106 285 -------HLKKLDLVSVYFADNEFNHLIS-------KFPSLEDLFVTRCCL---PGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 285 -------~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~L~~c~~---~~~i~~~~~~L~~L~l~~c~ 341 (360)
+|+.|+++++.++..... .+. .+++|++|++++|.. ...+...+++|+.|+++++.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred hhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 555555555554432111 122 345677777776621 12233346777777777654
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.92 E-value=7.6e-10 Score=107.25 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=126.7
Q ss_pred ccCcccccccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--cc
Q 018106 159 YTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CV 234 (360)
Q Consensus 159 ~~l~~~l~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i 234 (360)
..+|..+. ++|++|++.++.+... .....+++|++|.++++.++.... ..+..+++|++|++.+|...... .+
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccCHHHh
Confidence 34554332 7899999999987533 245788999999999998743222 23578999999999998653322 25
Q ss_pred ccCCCccEEEecccc-ch--hhhHhhcCCCccEEEEEeecCCCcce-eeccCCCCccEEEeeccccCcHHHHHHhcCCCC
Q 018106 235 SKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 310 (360)
Q Consensus 235 ~~l~~L~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 310 (360)
..+++|++|+++++. .. .......+++|++|+++.+....... ..+..+++|++|++.++.++... ...+..+++
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~ 173 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRD 173 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-hhhhhcccc
Confidence 678999999999886 11 11223467899999999665322222 35788999999999998876542 334667899
Q ss_pred CCEEEecCcCC--h-hhhhhcCCccceEeccccc
Q 018106 311 LEDLFVTRCCL--P-GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 311 L~~L~L~~c~~--~-~~i~~~~~~L~~L~l~~c~ 341 (360)
|++|++..+.. . ..+...+++|+.|+++++.
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 99999998732 2 2223457889999988764
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=1.6e-09 Score=95.00 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=79.5
Q ss_pred ccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEec
Q 018106 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~ 246 (360)
.+++|+.|++.++.+........+++|+.|.++++.+++-.. +..+++|++|++.+|..-..-.+.. ++|+.|+++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLD 114 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECC
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEEcc
Confidence 456666666666655443334456666666666666532111 5566667777666664322112222 566666666
Q ss_pred ccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
++. ..+.. ...+++|+.|+++.+..... ..+..+++|+.|+++++.+++. ..+..+++|++|++++|
T Consensus 115 ~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 115 NNELRDTDS-LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp SSCCSBSGG-GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred CCccCCChh-hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 664 12211 22456666666664433221 1355667777777777666554 33556677777777765
No 85
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.91 E-value=1e-09 Score=89.23 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCCccEEEEEeecCCCc-ceeeccCCCCccEEEeeccccCcHH--HHHHhcCCCCCCEEEecCc
Q 018106 259 VPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSVYFADNE--FNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 259 ~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~c 319 (360)
+|+|++|+++.+..... ....+..+++|+.|+++++.++... ....+..+++|++|++.+|
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 45555555553333221 1134456677777777766654421 1234566777777777665
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.91 E-value=6.6e-09 Score=100.00 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=109.7
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEEeCh-HHHHHHHhcCCcc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDE-QMVQKLASECPLL 218 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~L 218 (360)
.+++.|+ +..........+ ..+++|++|++++|.+... .....+++|+.|.++++.++. ..+...+..+++|
T Consensus 302 ~~L~~L~--l~~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 302 MNIKNFT--VSGTRMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp CCCSEEE--EESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred CceeEEE--cCCCccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence 5677777 443322222211 3567888888888877652 244677888888888888753 3445557788888
Q ss_pred cEEEeecCCCCCccc---cccCCCccEEEeccccchhhhHhhcC-CCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106 219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVEISV-PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (360)
Q Consensus 219 e~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~~~~~~~~~~~~-p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (360)
++|++.+|.....+. +..+++|+.|+++++. -...+.... ++|+.|+++.+... ..+..+..+++|+.|+++++
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC
Confidence 888888876543233 3345788888888875 112222222 68888888865543 33444457888888888887
Q ss_pred ccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 295 YFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
.++.- ....+..+++|++|++++|
T Consensus 455 ~l~~l-~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 455 QLKSV-PDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCCcc-CHHHhccCCcccEEECcCC
Confidence 76641 1123567788888888877
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=4.6e-10 Score=98.44 Aligned_cols=163 Identities=10% Similarity=0.017 Sum_probs=117.4
Q ss_pred CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccc
Q 018106 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~ 248 (360)
.+++.+.+.++.+........+++|++|.++++.++.-. -+..+++|++|++.+|.......+..+++|+.|+++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 345555555555443323457899999999999874322 26789999999999986544334677899999999998
Q ss_pred c-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh-hhh
Q 018106 249 S-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIK 326 (360)
Q Consensus 249 ~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~-~i~ 326 (360)
. ..+..+. .++|+.|+++.+..... ..+..+++|+.|+++++.+++-. .+..+++|++|++++|.... ...
T Consensus 96 ~l~~l~~~~--~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~~l 168 (263)
T 1xeu_A 96 RLKNLNGIP--SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTGGL 168 (263)
T ss_dssp CCSCCTTCC--CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCTTS
T ss_pred ccCCcCccc--cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchHHh
Confidence 6 2222222 28999999996655432 24788999999999999887642 47789999999999983211 334
Q ss_pred hcCCccceEeccccc
Q 018106 327 ISSNQLKNLLFRSCK 341 (360)
Q Consensus 327 ~~~~~L~~L~l~~c~ 341 (360)
..+++|+.|+++++.
T Consensus 169 ~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCCCCEEEEEEEE
T ss_pred ccCCCCCEEeCCCCc
Confidence 467899999998764
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.90 E-value=7.4e-10 Score=95.53 Aligned_cols=168 Identities=13% Similarity=-0.003 Sum_probs=115.6
Q ss_pred CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEE-eChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccE
Q 018106 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKI 242 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~ 242 (360)
++|+.|++.++.+.... ....+++|++|.++++. ++.-.- ..+..+++|++|++.+|..+..+. +..+++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 48999999998875332 35678999999999986 532111 125789999999999855555443 346799999
Q ss_pred EEecccc-chhhhHhhcCCCcc---EEEEEee-cCCCcceeeccCCCCcc-EEEeeccccCcHHHHHHhcCCCCCCEEEe
Q 018106 243 MEIRSFS-EEIEIVEISVPSLQ---QLTLLFY-GARRPRVVEVARSPHLK-KLDLVSVYFADNEFNHLISKFPSLEDLFV 316 (360)
Q Consensus 243 L~l~~~~-~~~~~~~~~~p~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~L 316 (360)
|++.++. ..+.. ...+++|+ +|+++.+ ....-....+..+++|+ .|+++++.++.- ....+.. ++|++|++
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEc
Confidence 9999886 22222 23566777 9999855 33222222367889999 999998877631 1223344 78999999
Q ss_pred cCcCChhhh----hhcC-CccceEecccc
Q 018106 317 TRCCLPGKI----KISS-NQLKNLLFRSC 340 (360)
Q Consensus 317 ~~c~~~~~i----~~~~-~~L~~L~l~~c 340 (360)
.+|..+..+ ...+ ++|+.|++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 998433333 3456 89999999874
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.89 E-value=2.4e-09 Score=94.35 Aligned_cols=180 Identities=17% Similarity=0.116 Sum_probs=120.5
Q ss_pred cccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cc
Q 018106 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LC 233 (360)
Q Consensus 158 ~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~ 233 (360)
...+|..+ .++|++|++.++.+.... ....+++|++|.++++.++.-.. ..+..+++|++|++.++..... -.
T Consensus 19 l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhh
Confidence 34455433 367999999998875332 45678999999999997742221 2357789999999998864222 22
Q ss_pred cccCCCccEEEecccc-chhhhH-hhcCCCccEEEEEeecCCC-cceeeccCCCCccEEEeeccccCcH---HHHHHhcC
Q 018106 234 VSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN---EFNHLISK 307 (360)
Q Consensus 234 i~~l~~L~~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~ 307 (360)
+..+++|+.|.+.++. ..+... ...+++|++|+++.+.... ..+..+..+++|+.|+++++.++.. .+.. +..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence 4567999999999886 222221 2367899999999655433 2345678899999999999887652 2222 334
Q ss_pred CCCCC-EEEecCcCCh--hhhhhcCCccceEeccccc
Q 018106 308 FPSLE-DLFVTRCCLP--GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 308 ~~~L~-~L~L~~c~~~--~~i~~~~~~L~~L~l~~c~ 341 (360)
++.|. +|+++++... ........+|+.|+++++.
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred ccccceeeecCCCcccccCccccCCCcccEEECCCCc
Confidence 44444 8999887322 1111234489999998764
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=1.9e-09 Score=109.49 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=82.0
Q ss_pred Cccccc--ccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEE-eChHHHHHHH-------hcCCcccEEEeecCCC
Q 018106 161 LPQAIF--SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLA-------SECPLLEDLCFSNCWG 228 (360)
Q Consensus 161 l~~~l~--~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~l~-------~~cp~Le~L~l~~c~~ 228 (360)
+|..+. .+++|+.|+|.+|.+.... ....+++|+.|.++++. ++...+..-+ ..+|+|+.|++.+|..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 777776 7899999999998754322 45678899999999987 6541222212 3456888888888764
Q ss_pred CCcc----ccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCC-ccEEEeecccc
Q 018106 229 LKHL----CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH-LKKLDLVSVYF 296 (360)
Q Consensus 229 ~~~~----~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~ 296 (360)
. .+ .+..+++|+.|+++++. ..+. ....+++|+.|+++.+... ..+..+..+++ |+.|+++++.+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 3 32 24456788888887765 1111 1124566677777644433 23333444555 66666655544
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.88 E-value=3.5e-09 Score=108.01 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=19.0
Q ss_pred cccCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEe
Q 018106 166 FSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL 203 (360)
Q Consensus 166 ~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~ 203 (360)
..+++|++|++++|.+.... ....+++|++|.++++.+
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 34555555555555543221 234455556665555544
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=6e-09 Score=105.77 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=85.5
Q ss_pred CCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccc----------cCCCccEEEecccc-chhhhHhh--c
Q 018106 192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS----------KASKLKIMEIRSFS-EEIEIVEI--S 258 (360)
Q Consensus 192 ~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~----------~l~~L~~L~l~~~~-~~~~~~~~--~ 258 (360)
+|+.|.++++.++ .....++..+++|+.|++.+|.. ..+... ++++|+.|++++|. ..+..... .
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 5666666666654 11223445677788888777643 222211 12378888887775 22222222 5
Q ss_pred CCCccEEEEEeecCCCcceeeccCCCCccEEEeec------cccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh-cCCc
Q 018106 259 VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS------VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-SSNQ 331 (360)
Q Consensus 259 ~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~-~~~~ 331 (360)
+|+|+.|+++.+.... .+..+..+++|+.|+|++ +.+... +...+..+++|++|+|++|.. ..+.. ..++
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~ 828 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQ 828 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCCCSS
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCCC-CccCHhhcCC
Confidence 6788888887554433 444566778888888865 333322 222355678888888888743 33332 2357
Q ss_pred cceEecccccc
Q 018106 332 LKNLLFRSCKY 342 (360)
Q Consensus 332 L~~L~l~~c~~ 342 (360)
|+.|+|++++.
T Consensus 829 L~~LdLs~N~l 839 (876)
T 4ecn_A 829 LYILDIADNPN 839 (876)
T ss_dssp SCEEECCSCTT
T ss_pred CCEEECCCCCC
Confidence 88888887753
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.88 E-value=5.8e-10 Score=88.74 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=7.5
Q ss_pred cCCCCccEEEeecccc
Q 018106 281 ARSPHLKKLDLVSVYF 296 (360)
Q Consensus 281 ~~~~~L~~L~l~~~~~ 296 (360)
..+++|+.|+++++.+
T Consensus 110 ~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 110 KKLENLKSLDLFNCEV 125 (149)
T ss_dssp GGCTTCCEEECTTCGG
T ss_pred hhCCCCCEEeCcCCcc
Confidence 3444455555544443
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.87 E-value=7.5e-09 Score=102.96 Aligned_cols=13 Identities=15% Similarity=0.439 Sum_probs=8.9
Q ss_pred CCccceEeccccc
Q 018106 329 SNQLKNLLFRSCK 341 (360)
Q Consensus 329 ~~~L~~L~l~~c~ 341 (360)
.++|+.|++.++.
T Consensus 221 ~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 221 NTSIRNLSLSNSQ 233 (680)
T ss_dssp TSCCCEEECTTSC
T ss_pred hccccEEEccCCc
Confidence 3677888877663
No 95
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=6.4e-09 Score=95.17 Aligned_cols=137 Identities=20% Similarity=0.189 Sum_probs=88.8
Q ss_pred HHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEecccc---chhhhHhh-cCCCccEEEEEee--cCC-Cc-c--
Q 018106 207 MVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS---EEIEIVEI-SVPSLQQLTLLFY--GAR-RP-R-- 276 (360)
Q Consensus 207 ~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~---~~~~~~~~-~~p~L~~L~l~~~--~~~-~~-~-- 276 (360)
++..++..+|+|++|.|.++.......+. +++|++|.+..|. ..+..+.. .+|+|++|.++.+ ... .. .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 45677888999999999887443322233 5899999998776 22333332 6899999998621 111 10 1
Q ss_pred ---eeeccCCCCccEEEeeccccCcHHHHHHh--cCCCCCCEEEecCcCChh----hhh---hcCCccceEecccccccc
Q 018106 277 ---VVEVARSPHLKKLDLVSVYFADNEFNHLI--SKFPSLEDLFVTRCCLPG----KIK---ISSNQLKNLLFRSCKYLK 344 (360)
Q Consensus 277 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~L~~c~~~~----~i~---~~~~~L~~L~l~~c~~l~ 344 (360)
......+|+|+.|++.++.+.+.....+. ..+|+|++|+|+.|.... .+. ..+++|+.|++++|. ++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~ 320 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS 320 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence 11224589999999988887765444443 357899999998763222 122 346789999998773 44
Q ss_pred c
Q 018106 345 S 345 (360)
Q Consensus 345 ~ 345 (360)
+
T Consensus 321 d 321 (362)
T 2ra8_A 321 D 321 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.85 E-value=3.1e-09 Score=108.37 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=36.8
Q ss_pred CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcCCccceEeccccc
Q 018106 284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~~~L~~L~l~~c~ 341 (360)
++|+.|+++++.+... ....+..+++|++|+|.+|... ......+++|+.|+++++.
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 5677777776665442 1233566788888888887322 2233457788888888764
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.84 E-value=1.7e-09 Score=98.01 Aligned_cols=168 Identities=14% Similarity=0.063 Sum_probs=99.5
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHH-HHHHHhcCCcc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQM-VQKLASECPLL 218 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~L 218 (360)
+++++|+ +..... ..+|..++ ++|++|++.++.+.... ....+++|++|.++++.++... ....+... +|
T Consensus 102 ~~L~~L~--L~~n~l--~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 102 RKLQKLY--ISKNHL--VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCCEEE--CCSSCC--CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred CCCCEEE--CCCCcC--CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 5788888 543322 24444443 78999999988776443 3467889999999888774321 11223333 78
Q ss_pred cEEEeecCCCCCccccccCCCccEEEecccc-chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 219 e~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
++|++.++.. ..+...-.++|+.|+++++. .... .....+++|+.|+++.+.........+..+++|+.|+++++.+
T Consensus 175 ~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 175 NYLRISEAKL-TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp SCCBCCSSBC-SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred CEEECcCCCC-CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 8888877653 22222222577777777664 1111 1122556777777775444333333456677777777777666
Q ss_pred CcHHHHHHhcCCCCCCEEEecCc
Q 018106 297 ADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+. +...+..+++|++|++++|
T Consensus 254 ~~--lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 254 SR--VPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CB--CCTTGGGCTTCCEEECCSS
T ss_pred ee--cChhhhcCccCCEEECCCC
Confidence 52 2222556777777777776
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.84 E-value=1.8e-09 Score=96.94 Aligned_cols=172 Identities=16% Similarity=0.105 Sum_probs=117.8
Q ss_pred cCCccEEEEeeeeccCCC--Cc--cCCCCCCEEEeeeEEeChHH--HH-HHHhcCCcccEEEeecCCCCCcc--ccccCC
Q 018106 168 ANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQM--VQ-KLASECPLLEDLCFSNCWGLKHL--CVSKAS 238 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~--~~--~~~~~L~~L~L~~~~~~~~~--l~-~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~ 238 (360)
.++|++|++.+|.+.... .. ..+++|++|.++++.++... +. .-+..+++|++|++.+|...... .+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 567999999999876433 22 67899999999999985311 11 12348999999999998753322 344679
Q ss_pred CccEEEecccc-chhhhH-----hhcCCCccEEEEEeecCCCccee---eccCCCCccEEEeeccccCcHHHHHHhcCC-
Q 018106 239 KLKIMEIRSFS-EEIEIV-----EISVPSLQQLTLLFYGARRPRVV---EVARSPHLKKLDLVSVYFADNEFNHLISKF- 308 (360)
Q Consensus 239 ~L~~L~l~~~~-~~~~~~-----~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~- 308 (360)
+|+.|+++++. .....+ ...+|+|++|.++.+........ .+..+++|++|+++++.+++..... +..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 99999999986 221112 13678999999996655321111 2467899999999998876642111 2233
Q ss_pred --CCCCEEEecCcCChhhhhh-cCCccceEeccccc
Q 018106 309 --PSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCK 341 (360)
Q Consensus 309 --~~L~~L~L~~c~~~~~i~~-~~~~L~~L~l~~c~ 341 (360)
++|++|++++|... .+.. .+++|+.|+++++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNR 283 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCC
T ss_pred CcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCc
Confidence 79999999998322 2221 24799999998764
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.83 E-value=4e-08 Score=95.57 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=17.4
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeec
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRL 181 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 181 (360)
.++++|+ +..+.......|..+..+++|++|++.++.+
T Consensus 121 ~~L~~L~--Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 121 ASLRHLD--LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp TTCSEEE--CCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred ccCCEEE--CCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 3455555 4333332333334444455555555555443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.78 E-value=4.1e-09 Score=88.75 Aligned_cols=143 Identities=17% Similarity=0.016 Sum_probs=75.6
Q ss_pred cCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEE
Q 018106 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIM 243 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L 243 (360)
.++|++|++.++.+.... ....+++|++|.++++.++.-. ...+..+++|++|++.++..... ..+..+++|+.|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 357788888887765333 2346777888888777663211 12345677788888777643221 112345677777
Q ss_pred Eecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 244 EIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 244 ~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+++++. ..+.. ....+++|++|++..+.........+..+++|+.|++.++.+. ..+++|+.|.++.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWIN 175 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHH
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHH
Confidence 776664 11111 1123455666666543332222222445566666666555432 23455555555543
No 101
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=2.5e-07 Score=84.53 Aligned_cols=197 Identities=15% Similarity=0.078 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhhhhcCCcccceEEEEeecCCCC-CC-hhhHHHHHHHHH-HcCceEEEeecccCCC--------ccccCc
Q 018106 94 KFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GS-APIVDRWIRLAV-ENGVRELDFENITDEN--------TVYTLP 162 (360)
Q Consensus 94 ~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~-~~-~~~~~~~l~~~~-~~~l~~L~~~l~~~~~--------~~~~l~ 162 (360)
.+.+.+.+++. ......++.+.+..-. ++ .. ...+..+...+. .++|+.|. +..... ....+.
T Consensus 92 ~~~~~~~~fl~--~~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~--l~~~~~e~~~is~~~~~~L~ 165 (362)
T 2ra8_A 92 EGVNLMDKILK--DKKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLF--WGDIDFEEQEISWIEQVDLS 165 (362)
T ss_dssp TTCCHHHHHHH--CTTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEE--ECCCCTTTCCGGGCBCCBCH
T ss_pred cHHHHHHHHhc--CCCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhhee--ecCcchhhcccccccccCHH
Confidence 33445555552 2234457777666322 22 11 123444444333 37999998 422111 111244
Q ss_pred ccccccCCccEEEEeeee-ccCCCCccCCCCCCEEEeeeEEeChHHHHHHHh-cCCcccEEEeecCCC--CCc-------
Q 018106 163 QAIFSANSVTNLRLVWCR-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWG--LKH------- 231 (360)
Q Consensus 163 ~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~c~~--~~~------- 231 (360)
..+..+++|+.|.+.++. +... ....++|++|.|..+.++.+.+..+.. .+|+|+.|+|..+.. ...
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~--~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIG--KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCC--SCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceec--cccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 445567999999998873 2211 134789999999988888888877653 689999999863211 011
Q ss_pred --cccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcc---eeeccCCCCccEEEeeccccCcHHHHHHh-
Q 018106 232 --LCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR---VVEVARSPHLKKLDLVSVYFADNEFNHLI- 305 (360)
Q Consensus 232 --~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 305 (360)
+....+|+|+.|.+.+|. ..+.. ......+|+|++|+|+.+.+++.....+.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~----------------------i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~ 301 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAE----------------------EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCT----------------------THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT
T ss_pred HHHhcCCCCCcCEEeCCCCC----------------------CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh
Confidence 011124555555555443 11100 00112457777777777777665544443
Q ss_pred --cCCCCCCEEEecCcC
Q 018106 306 --SKFPSLEDLFVTRCC 320 (360)
Q Consensus 306 --~~~~~L~~L~L~~c~ 320 (360)
..+++|+.|+|+.|.
T Consensus 302 ~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 302 HVDKIKHLKFINMKYNY 318 (362)
T ss_dssp THHHHTTCSEEECCSBB
T ss_pred hcccCCcceEEECCCCc
Confidence 346777788777763
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.76 E-value=2.8e-08 Score=80.60 Aligned_cols=124 Identities=21% Similarity=0.073 Sum_probs=83.6
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
+++++|+ +..+......+|..+..+++|+.|++.+|.+........+++|+.|.++++.+... +..++..+|+|+.|
T Consensus 24 ~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 5788888 65544433456666667899999999998876554556788999999999988542 44556678999999
Q ss_pred EeecCCCCCc---cccccCCCccEEEecccc-chhhh----HhhcCCCccEEEEE
Q 018106 222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLL 268 (360)
Q Consensus 222 ~l~~c~~~~~---~~i~~l~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~ 268 (360)
++.+|..... ..+..+++|+.|++.++. ..... ....+|+|++|++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 9998864331 234456788888888775 11111 22245555555555
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.75 E-value=4.2e-08 Score=92.83 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=14.1
Q ss_pred CCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
++|+.|+++++.++. +....++|++|++++|
T Consensus 257 ~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 257 PSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN 287 (454)
T ss_dssp TTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred cccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence 455555555444332 1112345555555554
No 104
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.74 E-value=1.6e-08 Score=82.01 Aligned_cols=91 Identities=10% Similarity=0.130 Sum_probs=71.8
Q ss_pred ccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEE-eChHHHHHHHhc---CCcccEEEeecCCCCCcc
Q 018106 159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE---CPLLEDLCFSNCWGLKHL 232 (360)
Q Consensus 159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~c~~~~~~ 232 (360)
..+|..-...-.|++|++++|.+.+.+ ....|++|++|+|++|. +++.++..+... |++|++|+|++|..++.-
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 345543333567999999999977665 44689999999999996 699999987763 789999999999877653
Q ss_pred ---ccccCCCccEEEecccc
Q 018106 233 ---CVSKASKLKIMEIRSFS 249 (360)
Q Consensus 233 ---~i~~l~~L~~L~l~~~~ 249 (360)
.+..+++|++|++.+|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 33567999999999997
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.73 E-value=7.9e-08 Score=94.23 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=49.8
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
.++++|+ +..+... .+|. ..++|++|++++|.+...+ ..+++|++|.++++.++. + -...++|+.|
T Consensus 61 ~~L~~L~--L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp--~~l~~L~~L~Ls~N~l~~--l---~~~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLV--IPDNNLT--SLPA---LPPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLTH--L---PALPSGLCKL 126 (622)
T ss_dssp TTCSEEE--ECSCCCS--CCCC---CCTTCCEEEECSCCCSCCC--CCCTTCCEEEECSCCCCC--C---CCCCTTCCEE
T ss_pred CCCcEEE--ecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCC--CCCCCCCEEECcCCcCCC--C---CCCCCCcCEE
Confidence 4667766 4333221 2332 3467777777777655322 256677777777766531 1 1145667777
Q ss_pred EeecCCCCCccccccCCCccEEEecccc
Q 018106 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS 249 (360)
Q Consensus 222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~ 249 (360)
++.+|. +..+.. .+++|+.|++++|.
T Consensus 127 ~L~~N~-l~~lp~-~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 127 WIFGNQ-LTSLPV-LPPGLQELSVSDNQ 152 (622)
T ss_dssp ECCSSC-CSCCCC-CCTTCCEEECCSSC
T ss_pred ECCCCC-CCcCCC-CCCCCCEEECcCCc
Confidence 776654 222222 13667777776664
No 106
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.71 E-value=3.6e-08 Score=95.83 Aligned_cols=170 Identities=18% Similarity=0.115 Sum_probs=111.4
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCC--CCccCCCCCCEEEeeeEEeCh-HHHHHHHhcCCcc
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDE-QMVQKLASECPLL 218 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~L 218 (360)
.++++++ +..........+ ..+++|++|++.++.+... .....+++|+.|.++++.++. ..+...+..+++|
T Consensus 331 ~~L~~L~--l~~n~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 331 MNIKMLS--ISDTPFIHMVCP---PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405 (562)
T ss_dssp CCCSEEE--EESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC
T ss_pred CcceEEE--ccCCCcccccCc---cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC
Confidence 5677777 543332222211 3568889999988887652 244678889999998888743 3444456788899
Q ss_pred cEEEeecCCCCCccc---cccCCCccEEEeccccchhhhHhhcC-CCccEEEEEeecCCCcceeeccCCCCccEEEeecc
Q 018106 219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVEISV-PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (360)
Q Consensus 219 e~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~~~~~~~~~~~~-p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (360)
++|++.+|.....+. ...+++|+.|+++++. -...+.... ++|+.|+++.+... ..+..+..+++|+.|+++++
T Consensus 406 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS
T ss_pred CEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC
Confidence 999998876533222 3456889999998886 112222233 58889888855443 33334457888999999888
Q ss_pred ccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 295 YFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
.++.- ....+..+++|++|++++|
T Consensus 484 ~l~~l-~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 484 QLKSV-PDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCCCC-CTTSTTTCTTCCCEECCSC
T ss_pred CCCCC-CHHHHhcCCCCCEEEecCC
Confidence 77641 1223667888889998887
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.71 E-value=2.7e-08 Score=78.99 Aligned_cols=123 Identities=21% Similarity=0.136 Sum_probs=82.0
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
.++++|+ +..+......+|..+..+++|+.|++.+|.+........+++|++|.++++.++.. +...+..+++|++|
T Consensus 17 ~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred ccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence 4678888 65544332456666667889999999988876544556788899999998887542 44556778999999
Q ss_pred EeecCCCCCc---cccccCCCccEEEecccc-chhhh----HhhcCCCccEEEE
Q 018106 222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTL 267 (360)
Q Consensus 222 ~l~~c~~~~~---~~i~~l~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l 267 (360)
++.+|...+. ..+..+++|+.|+++++. ..... ....+|+|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 9988864331 234567888888888775 11111 2234566666554
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.69 E-value=2.9e-08 Score=96.25 Aligned_cols=174 Identities=14% Similarity=0.037 Sum_probs=91.5
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
.+++.|+ +...... .+|..+ .++|++|++++|.+...+ ..+++|+.|.++++.++. +.. + +.+|+.|
T Consensus 59 ~~L~~L~--Ls~n~L~--~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L 125 (571)
T 3cvr_A 59 NQFSELQ--LNRLNLS--SLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-L--PASLKHL 125 (571)
T ss_dssp TTCSEEE--CCSSCCS--CCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-C--CTTCCEE
T ss_pred CCccEEE--eCCCCCC--ccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-h--hcCCCEE
Confidence 4677777 4333222 244433 266777777777665332 456777777777776632 222 2 1267777
Q ss_pred EeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHH
Q 018106 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF 301 (360)
Q Consensus 222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 301 (360)
++.+|.. ..+.. .+++|+.|+++++. +..+....++|+.|+++.+.... .+. +. ++|+.|+++++.++. +
T Consensus 126 ~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~--l 195 (571)
T 3cvr_A 126 DVDNNQL-TMLPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES--L 195 (571)
T ss_dssp ECCSSCC-SCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS--C
T ss_pred ECCCCcC-CCCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc--h
Confidence 7776643 22222 45677777777664 22222245667777777544332 222 22 677777777666542 1
Q ss_pred HHHhcCCCCC-------CEEEecCc--CChhhhhhcCCccceEeccccc
Q 018106 302 NHLISKFPSL-------EDLFVTRC--CLPGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 302 ~~~~~~~~~L-------~~L~L~~c--~~~~~i~~~~~~L~~L~l~~c~ 341 (360)
.. +. ++| ++|+|++| ..+.......++|+.|+++++.
T Consensus 196 p~-~~--~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 196 PA-VP--VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred hh-HH--HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 11 11 144 77777766 1122212236667777776654
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.66 E-value=7.5e-09 Score=87.12 Aligned_cols=144 Identities=14% Similarity=0.083 Sum_probs=97.8
Q ss_pred CCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc-chhhh-HhhcCCCccE
Q 018106 189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQ 264 (360)
Q Consensus 189 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~ 264 (360)
..++|++|.++++.++.-. ...+..+++|++|++.++...... .+..+++|++|+++++. ..+.. ....+++|++
T Consensus 26 ~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 3568999999999874222 223578999999999988543211 13467899999999886 22221 1236789999
Q ss_pred EEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhhhcCCccceEecc
Q 018106 265 LTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFR 338 (360)
Q Consensus 265 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~~~~~L~~L~l~ 338 (360)
|+++.+.........+..+++|+.|++.++.++.. ....+..+++|++|++.+|+.. ..+++|+.|++.
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~~ 173 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEW 173 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHHH
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCee----cCCCCHHHHHHH
Confidence 99986555433333467889999999998877642 2334677899999999987322 234455555544
No 110
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=7.2e-09 Score=95.39 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=57.5
Q ss_pred HHHcCceEEEeecccCCCccc---cCcccccc-cCCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHHH
Q 018106 139 AVENGVRELDFENITDENTVY---TLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKL 211 (360)
Q Consensus 139 ~~~~~l~~L~~~l~~~~~~~~---~l~~~l~~-~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l 211 (360)
.+...+++++ +..+..... .+...+.. +++|++|+|++|.+.+.+ ....+++|++|+|+++.+++.+...+
T Consensus 69 ~~~~~L~~L~--Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 69 EVLSSLRQLN--LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HHHTTCCEEE--CTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HHHhhCCEEE--ecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 3446777777 544332221 11112222 357777777777664332 22345667777777777766555443
Q ss_pred H----hcCCcccEEEeecCCCCCcc---c----cccCCCccEEEecccc
Q 018106 212 A----SECPLLEDLCFSNCWGLKHL---C----VSKASKLKIMEIRSFS 249 (360)
Q Consensus 212 ~----~~cp~Le~L~l~~c~~~~~~---~----i~~l~~L~~L~l~~~~ 249 (360)
. ..++.|++|+|.+|.. +.. . +...++|++|++++|.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCC-HHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHHHHhcCCccceeeCCCCCC-ChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 2 2456777777777643 210 1 1234566666666664
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.62 E-value=1.7e-07 Score=91.90 Aligned_cols=115 Identities=15% Similarity=-0.031 Sum_probs=64.6
Q ss_pred cCCcccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeec
Q 018106 214 ECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (360)
Q Consensus 214 ~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (360)
.+++|+.|++.+|.. ..+.. ..++|+.|.+.++. +..+....++|+.|+++.+.... .+ ..+++|+.|++++
T Consensus 179 ~~~~L~~L~Ls~N~l-~~l~~-~~~~L~~L~L~~N~--l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 179 LPSGLQELSVSDNQL-ASLPT-LPSELYKLWAYNNR--LTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSG 250 (622)
T ss_dssp CCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSSC--CSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred cCCCCcEEECCCCCC-CCCCC-ccchhhEEECcCCc--ccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence 346666666665542 22211 13566666666654 22232334677777777443322 11 4567788888877
Q ss_pred cccCcHHHHHHhcCCCCCCEEEecCcC--ChhhhhhcCCccceEeccccc
Q 018106 294 VYFADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~--~~~~i~~~~~~L~~L~l~~c~ 341 (360)
+.++. +...+++|++|+|++|. .+......+++|+.|++.++.
T Consensus 251 N~L~~-----lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 251 NRLTS-----LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SCCSC-----CCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCc-----CCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 76653 11256778888888772 222223456778888887664
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.59 E-value=9.8e-08 Score=81.63 Aligned_cols=125 Identities=16% Similarity=0.027 Sum_probs=64.9
Q ss_pred CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccEE
Q 018106 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIM 243 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~L 243 (360)
++|+.|++.++.+.... ....+++|+.|.|+++.++.-. ...+..+++|+.|++.++.. ..+. +..+++|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcC-CccChhHhCcchhhCeE
Confidence 66777777776655332 2345666777777666652111 11235566666666666542 2111 2234555555
Q ss_pred EeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 244 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 244 ~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+++++. .. ..+..+..+++|+.|+++++.++.-. ...+..+++|++|++.+|
T Consensus 118 ~Ls~N~----------------------l~-~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 118 FMCCNK----------------------LT-ELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp ECCSSC----------------------CC-SCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTS
T ss_pred eccCCc----------------------cc-ccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCC
Confidence 555543 21 11223345566666666666554321 123455666666666665
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.58 E-value=3.4e-08 Score=84.02 Aligned_cols=80 Identities=13% Similarity=0.009 Sum_probs=40.5
Q ss_pred CCccEEEEeeeeccCCC---CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEE
Q 018106 169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIM 243 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L 243 (360)
+.++.|++.++.+.... ....+++|++|.++++.++.-.- ..+..+++|++|++.++...... .+..+++|+.|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 34566666666554221 23456666666666665532111 12445666666666665432211 13344566666
Q ss_pred Eecccc
Q 018106 244 EIRSFS 249 (360)
Q Consensus 244 ~l~~~~ 249 (360)
+++++.
T Consensus 111 ~Ls~N~ 116 (220)
T 2v70_A 111 MLRSNR 116 (220)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 665553
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.57 E-value=3.9e-07 Score=86.16 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=93.3
Q ss_pred CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccc
Q 018106 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~ 248 (360)
++|++|++.++.+...+ ...++|++|.++++.++. +.. +..+++|++|++.+|.. ..+.. ..++|+.|++.++
T Consensus 111 ~~L~~L~l~~n~l~~l~--~~~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l-~~lp~-~~~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALS--DLPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSL-KKLPD-LPPSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCC--SCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSS
T ss_pred CCCcEEECCCCccCccc--CCCCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcC-cccCC-CcccccEEECcCC
Confidence 67777777777655321 112578888887776642 222 56777888888877643 22221 1257888888777
Q ss_pred c-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhhhhh
Q 018106 249 S-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI 327 (360)
Q Consensus 249 ~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~~ 327 (360)
. ..+.. ...+++|+.|++..+.... .+ ...++|+.|+++++.++. +.. +..+++|++|++++|. +..+..
T Consensus 184 ~l~~l~~-~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~l~~ 254 (454)
T 1jl5_A 184 QLEELPE-LQNLPFLTAIYADNNSLKK-LP---DLPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNL-LKTLPD 254 (454)
T ss_dssp CCSSCCC-CTTCTTCCEEECCSSCCSS-CC---CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSSCCS
T ss_pred cCCcCcc-ccCCCCCCEEECCCCcCCc-CC---CCcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCc-CCcccc
Confidence 5 22221 2356778888877444322 11 123578888888777652 222 5678889999998872 222323
Q ss_pred cCCccceEeccccc
Q 018106 328 SSNQLKNLLFRSCK 341 (360)
Q Consensus 328 ~~~~L~~L~l~~c~ 341 (360)
..++|+.|+++++.
T Consensus 255 ~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 255 LPPSLEALNVRDNY 268 (454)
T ss_dssp CCTTCCEEECCSSC
T ss_pred cccccCEEECCCCc
Confidence 34677777776653
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.52 E-value=6.9e-08 Score=78.95 Aligned_cols=131 Identities=15% Similarity=0.024 Sum_probs=63.4
Q ss_pred ccCCccEEEEeeeeccCCCCccC-CCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEe
Q 018106 167 SANSVTNLRLVWCRLEQPFDSIM-LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 245 (360)
Q Consensus 167 ~~~~L~~L~L~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l 245 (360)
.+++|+.|++.+|.+........ +++|+.|.++++.++.- ..+..+++|+.|++.+|.. ..+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~------------ 80 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIG------------ 80 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEEC------------
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccC------------
Confidence 35666666666665543221222 23556666655554321 1234445555555554432 1111
Q ss_pred ccccchhhhHhhcCCCccEEEEEeecCCCcc-eeeccCCCCccEEEeeccccCcH--HHHHHhcCCCCCCEEEecCcC
Q 018106 246 RSFSEEIEIVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLFVTRCC 320 (360)
Q Consensus 246 ~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~c~ 320 (360)
..+...+|+|++|+++.+...... ...+..+++|+.|++.++.++.. .....+..+|+|++|++..+.
T Consensus 81 -------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 -------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred -------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 011123445555555433321111 11345677777777777665431 112245667888888877763
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=2.9e-08 Score=82.93 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=67.1
Q ss_pred cCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEE
Q 018106 188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTL 267 (360)
Q Consensus 188 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l 267 (360)
..+++|++|.++++.++. +. .+..+++|+.|++.+|... . +......+|+|+.|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~--------------------l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-K--------------------IENLDAVADTLEELWI 100 (198)
T ss_dssp HHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-S--------------------CSSHHHHHHHCSEEEE
T ss_pred hcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-c--------------------ccchhhcCCcCCEEEC
Confidence 346667777777766633 11 2455666677666665321 1 1111122345555555
Q ss_pred EeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChhh-------------hhhcCCccce
Q 018106 268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK-------------IKISSNQLKN 334 (360)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~-------------i~~~~~~L~~ 334 (360)
+.+.... .+ .+..+++|+.|++.++.+++-.....+..+++|++|++++|..... +...+++|+.
T Consensus 101 ~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 101 SYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred cCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 5443322 11 3455677777777777766533323466777788888777632111 2345677777
Q ss_pred Ee
Q 018106 335 LL 336 (360)
Q Consensus 335 L~ 336 (360)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.50 E-value=1.5e-07 Score=80.00 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=44.4
Q ss_pred CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccEE
Q 018106 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIM 243 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~L 243 (360)
++|+.|++.++.+.... ....+++|+.|.|+++.++.-.. ..+.++++|++|+|.++.. ..+. ...+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEE
Confidence 56777777776654221 34456777777777776532111 1245567777777776643 2211 2345666666
Q ss_pred Eecccc
Q 018106 244 EIRSFS 249 (360)
Q Consensus 244 ~l~~~~ 249 (360)
+++++.
T Consensus 110 ~L~~N~ 115 (220)
T 2v9t_B 110 LLNANK 115 (220)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 666554
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.50 E-value=6.2e-08 Score=79.23 Aligned_cols=134 Identities=16% Similarity=0.056 Sum_probs=79.6
Q ss_pred cCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccCCCccEEEeccccchhhhHhhcCCCccEEEE
Q 018106 188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTL 267 (360)
Q Consensus 188 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l 267 (360)
..+++|+.|.++++.++. +..+...+|+|+.|++.+|...+.-.+..++ +|+.|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~----------------------~L~~L~L 71 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLR----------------------RLKTLLV 71 (176)
T ss_dssp ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCS----------------------SCCEEEC
T ss_pred CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCC----------------------CCCEEEC
Confidence 445667777777766531 1223333446777777666422211222334 4555555
Q ss_pred EeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC--hhh----hhhcCCccceEeccccc
Q 018106 268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--PGK----IKISSNQLKNLLFRSCK 341 (360)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--~~~----i~~~~~~L~~L~l~~c~ 341 (360)
+.+.........+..+++|+.|+++++.++.-.....+..+++|++|++++|.. ... +...+++|+.|++.++.
T Consensus 72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 433222111112367899999999999886532222467899999999999832 122 35678999999998776
Q ss_pred cccc
Q 018106 342 YLKS 345 (360)
Q Consensus 342 ~l~~ 345 (360)
.-..
T Consensus 152 ~~~~ 155 (176)
T 1a9n_A 152 LKER 155 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.49 E-value=1.8e-08 Score=84.21 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=82.6
Q ss_pred cccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccccccC
Q 018106 158 VYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKA 237 (360)
Q Consensus 158 ~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~l 237 (360)
...+|..+..+++|++|++.+|.+........+++|+.|.++++.++ .+...+..+|+|+.|++.+|.....-.+..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l 114 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKL 114 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence 34455566678889999998888765444556788999999988875 2333455668888888888753221122334
Q ss_pred CCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCc-ceeeccCCCCccEEEeeccccCcH---------HHHHHhcC
Q 018106 238 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSVYFADN---------EFNHLISK 307 (360)
Q Consensus 238 ~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~---------~~~~~~~~ 307 (360)
++|+.|++.++. .... ....+..+++|+.|++.++.+... .....+..
T Consensus 115 ~~L~~L~l~~N~----------------------i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 115 VNLRVLYMSNNK----------------------ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp HHSSEEEESEEE----------------------CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCCCEEECCCCc----------------------CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 556666555543 1110 001245567777777766655332 22344667
Q ss_pred CCCCCEEEe
Q 018106 308 FPSLEDLFV 316 (360)
Q Consensus 308 ~~~L~~L~L 316 (360)
+|+|++|+-
T Consensus 173 l~~L~~Ld~ 181 (198)
T 1ds9_A 173 LPNLKKLDG 181 (198)
T ss_dssp CSSCSEECC
T ss_pred CCCcEEECC
Confidence 888888873
No 120
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=1.1e-07 Score=87.53 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=107.1
Q ss_pred cCCccEEEEeeeeccCCC-------CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--ccc----
Q 018106 168 ANSVTNLRLVWCRLEQPF-------DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCV---- 234 (360)
Q Consensus 168 ~~~L~~L~L~~~~~~~~~-------~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i---- 234 (360)
.++|+.|++.+|.+.... .....++|++|+|+++.+++..+..+...+++|++|+|.+|..... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468999999998876432 1113468999999999998888888888888999999999854221 111
Q ss_pred -ccCCCccEEEecccc---chhhhH---hhcCCCccEEEEEeecCCCcc----eeeccCCCCccEEEeeccccCcHHHHH
Q 018106 235 -SKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGARRPR----VVEVARSPHLKKLDLVSVYFADNEFNH 303 (360)
Q Consensus 235 -~~l~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~ 303 (360)
...++|+.|++++|. .....+ ....++|++|+++.+...+.. ...+...++|+.|+|+++.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 124789999999887 112222 135788999999865543221 223456778999999988888754443
Q ss_pred ---HhcCCCCCCEEEecCcC
Q 018106 304 ---LISKFPSLEDLFVTRCC 320 (360)
Q Consensus 304 ---~~~~~~~L~~L~L~~c~ 320 (360)
.+...++|++|+|++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 34567889999999884
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.47 E-value=1.2e-07 Score=80.67 Aligned_cols=145 Identities=14% Similarity=0.008 Sum_probs=98.8
Q ss_pred cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc
Q 018106 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS 249 (360)
Q Consensus 172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~ 249 (360)
+.++..++.+...+ ..-.++|+.|.++++.++.-.. ..+..+++|+.|++.++..... -.+.++++|+.|+++++.
T Consensus 14 ~~v~c~~~~l~~iP-~~l~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNLPETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCC-SSCCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCC-CccCcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 34555554443322 1123689999999998742221 1357789999999999864221 234567999999999886
Q ss_pred -chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 250 -EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 250 -~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
..+.. ....+++|+.|+++.+.........+..+++|+.|+++++.++.-. ...+..+++|++|+|.+|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCC
Confidence 22221 1236789999999966554444445778899999999998876532 234667899999999987
No 122
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.46 E-value=1.2e-07 Score=93.15 Aligned_cols=150 Identities=15% Similarity=0.018 Sum_probs=80.8
Q ss_pred cCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCC--ccccccCCCccEEEeccccchhh----hHhhcCCC
Q 018106 188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIE----IVEISVPS 261 (360)
Q Consensus 188 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~i~~l~~L~~L~l~~~~~~~~----~~~~~~p~ 261 (360)
..+++|+.+.+..+......-...+..+++++.+++..+.... ......+++|+.|.+.++. ... .....+++
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~-~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRN 495 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTT
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc-cccccCchhhhhccc
Confidence 3456666666655544111111224455666666666553311 1112335677777777664 111 11235677
Q ss_pred ccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCCh---hhhhhcC-CccceEec
Q 018106 262 LQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISS-NQLKNLLF 337 (360)
Q Consensus 262 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~---~~i~~~~-~~L~~L~l 337 (360)
|++|+++.+......+..+.++++|+.|+|+++.++.-. ...+..+++|++|+|++|... ....... ++|+.|++
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 788877755443333344667778888888777665421 223566778888888776221 1112222 46777877
Q ss_pred cc
Q 018106 338 RS 339 (360)
Q Consensus 338 ~~ 339 (360)
++
T Consensus 575 ~~ 576 (635)
T 4g8a_A 575 TQ 576 (635)
T ss_dssp TT
T ss_pred eC
Confidence 64
No 123
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=2.5e-07 Score=75.01 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=52.8
Q ss_pred CccEEEEEeecCCCcceeeccCCCCccEEEeeccc-cCcHHHHHHhcC---CCCCCEEEecCcCChhhh----hhcCCcc
Q 018106 261 SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISK---FPSLEDLFVTRCCLPGKI----KISSNQL 332 (360)
Q Consensus 261 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~L~~c~~~~~i----~~~~~~L 332 (360)
+|++|+++++...+.....+..+++|++|+|+++. ++|..+..+... +++|++|+|++|..+.+. ...+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555444333333345667777777777664 677766665542 456777777777543321 2356777
Q ss_pred ceEeccccccccccc
Q 018106 333 KNLLFRSCKYLKSAL 347 (360)
Q Consensus 333 ~~L~l~~c~~l~~~~ 347 (360)
+.|++++|+.+++.+
T Consensus 142 ~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKE 156 (176)
T ss_dssp CEEEEESCTTCCCHH
T ss_pred CEEECCCCCCCCchH
Confidence 777777777777643
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.40 E-value=2.2e-07 Score=85.11 Aligned_cols=148 Identities=20% Similarity=0.120 Sum_probs=93.1
Q ss_pred CCccEEEEeeeeccCCC--Ccc-CCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc---ccccCCCccE
Q 018106 169 NSVTNLRLVWCRLEQPF--DSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKI 242 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~--~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~l~~L~~ 242 (360)
+.++.|+|+++.+.... ... .+++|+.|.|+++.++.-.. ..+..+++|+.|+|.++.. ..+ .+..+++|+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCE
Confidence 45788888888765332 223 77888888888887642221 1256788889998888753 322 2345688888
Q ss_pred EEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeec---cCCCCccEEEeeccccCcHHHHHHhcCCCC--CCEEE
Q 018106 243 MEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEV---ARSPHLKKLDLVSVYFADNEFNHLISKFPS--LEDLF 315 (360)
Q Consensus 243 L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~ 315 (360)
|+++++. ..+ ......+++|+.|+++.+....-....+ ..+++|+.|+|+++.++.-. ...+..++. |+.|+
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGLY 195 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-HHHHHHSCHHHHTTEE
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-HHHhhhccHhhcceEE
Confidence 8888776 111 1122357888888888554432111122 56889999999888876532 223445665 47888
Q ss_pred ecCc
Q 018106 316 VTRC 319 (360)
Q Consensus 316 L~~c 319 (360)
|.+|
T Consensus 196 l~~N 199 (361)
T 2xot_A 196 LHNN 199 (361)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 8886
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.40 E-value=1.4e-07 Score=85.99 Aligned_cols=201 Identities=14% Similarity=0.037 Sum_probs=105.6
Q ss_pred cCceEEEeecccCCCccccCcccc-cccCCccEEEEeeeeccC---CCCccCCCCCCEEEe-eeEEeChHHHHHHHhcCC
Q 018106 142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQ---PFDSIMLCSLKKLTL-ERVCLDEQMVQKLASECP 216 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp 216 (360)
.++++|+ +..... ..++... ..+++|++|+|++|.+.. ......+++|+++.. .++.+..-. ...+..++
T Consensus 30 ~~l~~L~--Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELR--FVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLP 104 (350)
T ss_dssp TTCSEEE--EESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCT
T ss_pred CCCCEEE--ccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcc
Confidence 4788888 543322 2445433 347889999998887532 113345666665443 333332111 12356788
Q ss_pred cccEEEeecCCCCCcc--ccccCCCccEEEeccccchhhhHh----hc-CCCccEEEEEeecCCCcceeeccCCCCccEE
Q 018106 217 LLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVE----IS-VPSLQQLTLLFYGARRPRVVEVARSPHLKKL 289 (360)
Q Consensus 217 ~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~~~~~~~~----~~-~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 289 (360)
+|+.|++.++...... ......++..|.+.++. .+..+. .. ...++.|.++.+.... .........+|+.|
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l 182 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDEL 182 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEE
T ss_pred ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccC-CChhhccccchhHH
Confidence 8999998887542211 11223466677776554 222221 11 2356777777443321 11122234567777
Q ss_pred Eeecc-ccCcHHHHHHhcCCCCCCEEEecCcCChhhhh-hcCCccceEecccccccccccccce
Q 018106 290 DLVSV-YFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKSALCVKV 351 (360)
Q Consensus 290 ~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i~-~~~~~L~~L~l~~c~~l~~~~~~~~ 351 (360)
.+.++ .++. .....+..+++|++|+|++| .+..+. ....+|++|.+.++.+++.+..+.-
T Consensus 183 ~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 183 NLSDNNNLEE-LPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp ECTTCTTCCC-CCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTT
T ss_pred hhccCCcccC-CCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchh
Confidence 77543 3322 12234566778888888876 223332 2345677777766666655544433
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.40 E-value=2.9e-07 Score=78.15 Aligned_cols=146 Identities=15% Similarity=0.029 Sum_probs=91.2
Q ss_pred cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc
Q 018106 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS 249 (360)
Q Consensus 172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~ 249 (360)
+.+++.++.+...+ ..-.+.++.|.++++.++.-.....+..+++|+.|++.++..... -.+..+++|+.|+++++.
T Consensus 14 ~~l~~s~n~l~~iP-~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCc-cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 45666665554322 122346788888888764322222356788888888887753221 124556888888888775
Q ss_pred -chhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 250 -EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 250 -~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
..+. .....+++|++|+++.+.........+..+++|+.|+++++.++.-. ...+..+++|++|+|++|
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCc
Confidence 2221 12236788888888855554433445667888888888887765531 233567788888888877
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.39 E-value=2.4e-07 Score=84.88 Aligned_cols=164 Identities=16% Similarity=0.076 Sum_probs=106.8
Q ss_pred cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHh-cCCcccEEEeecCCCCCcc---ccccCCCccEEEecc
Q 018106 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRS 247 (360)
Q Consensus 172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~c~~~~~~---~i~~l~~L~~L~l~~ 247 (360)
+.+++.++.+...+ ..-.+.++.|.|+++.++.-... .+. .+++|+.|+|.++.. ..+ .+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCC-SSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-ccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCC
Confidence 46666666554322 12235699999999987432222 233 789999999998864 332 245679999999998
Q ss_pred cc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHh---cCCCCCCEEEecCcCC-
Q 018106 248 FS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLI---SKFPSLEDLFVTRCCL- 321 (360)
Q Consensus 248 ~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~L~~c~~- 321 (360)
+. ..+.. ....+++|+.|+++.+.........+..+++|+.|+|+++.++.-. ...+ ..+++|++|+|++|..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCC
Confidence 86 22211 2236789999999966554333345778999999999998876521 1222 5689999999999822
Q ss_pred --hhhhhhcCCc--cceEeccc
Q 018106 322 --PGKIKISSNQ--LKNLLFRS 339 (360)
Q Consensus 322 --~~~i~~~~~~--L~~L~l~~ 339 (360)
........+. ++.|++.+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCS
T ss_pred ccCHHHhhhccHhhcceEEecC
Confidence 1122233444 47788765
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.36 E-value=7.3e-07 Score=76.15 Aligned_cols=143 Identities=13% Similarity=0.052 Sum_probs=87.8
Q ss_pred cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccEEEeccc
Q 018106 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF 248 (360)
Q Consensus 172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~ 248 (360)
+.++..+..+...+ ..-.++|++|.|+++.++.-.. ..+..+++|++|++.++.. ..+. +..+++|+.|+++++
T Consensus 22 ~~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVP-AGIPTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCC-SCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccC-CCCCCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence 44555444443222 1223788888888887743211 2256678888888887753 2221 233455666665554
Q ss_pred cchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCC---hhhh
Q 018106 249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL---PGKI 325 (360)
Q Consensus 249 ~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~---~~~i 325 (360)
. ........+..+++|+.|+++++.++. +...+..+++|++|+|++|.. ....
T Consensus 99 ~----------------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 99 Q----------------------LTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp C----------------------CCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred c----------------------CCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHH
Confidence 3 211112234678999999999888763 233357889999999999822 2233
Q ss_pred hhcCCccceEeccccc
Q 018106 326 KISSNQLKNLLFRSCK 341 (360)
Q Consensus 326 ~~~~~~L~~L~l~~c~ 341 (360)
....++|+.|++.+..
T Consensus 155 ~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred HhCCCCCCEEEeeCCC
Confidence 4567899999998654
No 129
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.35 E-value=3.6e-07 Score=89.66 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=102.1
Q ss_pred ccccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc-
Q 018106 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC- 233 (360)
Q Consensus 157 ~~~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~- 233 (360)
.-..+|..+ -+++++|+|+++.+.... ....+++|++|+|+++.++.-. ...+.++++|++|+|.+|. +..+.
T Consensus 42 ~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLAL 117 (635)
T ss_dssp CCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECG
T ss_pred CcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCH
Confidence 344555433 257899999998875322 4567899999999998763211 1235678999999999885 33332
Q ss_pred --cccCCCccEEEecccc-chhhhH-hhcCCCccEEEEEeecCCC-cceeeccCCCCccEEEeeccccCc---HHHHHHh
Q 018106 234 --VSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFAD---NEFNHLI 305 (360)
Q Consensus 234 --i~~l~~L~~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~ 305 (360)
+.++++|++|++.++. ..+... .-.+++|++|+++.+.... ..+..+..+++|++|+++++.++. ..+..+-
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 3567899999999886 222222 2357888999888554422 233456778889999998877644 2333322
Q ss_pred cCCCCCCEEEecCc
Q 018106 306 SKFPSLEDLFVTRC 319 (360)
Q Consensus 306 ~~~~~L~~L~L~~c 319 (360)
.....+..+++..+
T Consensus 198 ~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 198 QMPLLNLSLDLSLN 211 (635)
T ss_dssp TCTTCCCEEECTTC
T ss_pred hhhhhhhhhhcccC
Confidence 22234456666654
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.29 E-value=7.1e-07 Score=86.48 Aligned_cols=159 Identities=16% Similarity=0.086 Sum_probs=108.6
Q ss_pred cCceEEEeecccCCCccccCcccccccCCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEE
Q 018106 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (360)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 221 (360)
.+++.|+ +..+... .+| ..+++|+.|++.+|.+...+. -..+|++|.++++.++. +.. .+++|+.|
T Consensus 80 ~~L~~L~--Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L 145 (571)
T 3cvr_A 80 PQITVLE--ITQNALI--SLP---ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTM--LPE---LPALLEYI 145 (571)
T ss_dssp TTCSEEE--CCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEE
T ss_pred CCCCEEE--CcCCCCc--ccc---cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCCcCCC--CCC---cCccccEE
Confidence 5799999 6544333 444 336899999999998765322 22399999999998743 222 68999999
Q ss_pred EeecCCCCCccccccCCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCc-------cEEEeec
Q 018106 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL-------KKLDLVS 293 (360)
Q Consensus 222 ~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~ 293 (360)
++.+|.. ..+.. .+++|+.|+++++. ..+.. +. ++|+.|+++.+... ..+. +.. +| +.|++++
T Consensus 146 ~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 146 NADNNQL-TMLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp ECCSSCC-SCCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred eCCCCcc-CcCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 9998864 33333 45899999999886 22222 22 89999999966553 2222 322 66 9999999
Q ss_pred cccCcHHHHHHhcCCCCCCEEEecCcCChhhh
Q 018106 294 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKI 325 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~~i 325 (360)
+.++. +...+..+++|++|+|++|.....+
T Consensus 217 N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 217 NRITH--IPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp SCCCC--CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred Cccee--cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 88764 2333445899999999998554433
No 131
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.14 E-value=9.3e-07 Score=77.46 Aligned_cols=37 Identities=22% Similarity=0.527 Sum_probs=34.6
Q ss_pred ccccCCchHHHHHHhcCCChhhhh-hhcccccchhhhh
Q 018106 18 DRISELPTFIIHHLMSYLSAKEVA-RTSVLSKKWNQLY 54 (360)
Q Consensus 18 d~i~~LPd~iL~~I~s~L~~~~~~-~~~~vskrW~~l~ 54 (360)
..+..||+|+|.+||++||.++++ ++++|||+|+.+.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 578899999999999999999999 9999999999764
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=2.1e-06 Score=83.34 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=58.5
Q ss_pred CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEEEeccccchhhhHhhcCCCccEEEEE
Q 018106 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL 268 (360)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~ 268 (360)
..|+.|.++++.++. +.. +..+++|+.|++.+|... .+ .+..+++|+.|+++++. +.
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~--l~--------------- 499 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA--LE--------------- 499 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC--CC---------------
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC--CC---------------
Confidence 358889998887743 233 677889999999887532 22 23456677777776664 11
Q ss_pred eecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 269 FYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 269 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
. .+ .+..+++|+.|+++++.++.......+..+++|++|+|++|
T Consensus 500 -----~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 500 -----N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp -----C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred -----C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 0 11 23455555555555555443211223445566666666655
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=6.9e-06 Score=79.73 Aligned_cols=170 Identities=12% Similarity=0.052 Sum_probs=111.5
Q ss_pred cccCCccEEEEeeeeccCCC-CccCCCCCCEEEeeeEEe------------ChHHHHHHHhcCCcccEEE-eecCCCCCc
Q 018106 166 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL------------DEQMVQKLASECPLLEDLC-FSNCWGLKH 231 (360)
Q Consensus 166 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~------------~~~~l~~l~~~cp~Le~L~-l~~c~~~~~ 231 (360)
..+++|+.|+|+++.+..-+ ....|++|+.|.++++.. ........+..+++|+.|+ +..+ .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 34667777777776654221 334566777777654420 1122334567788888888 3332 1111
Q ss_pred c--------cccc--CCCccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHH
Q 018106 232 L--------CVSK--ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (360)
Q Consensus 232 ~--------~i~~--l~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (360)
+ .+.. ...|+.|+++++. ..+.. .-.+++|+.|+++.+... ..+..+..+++|+.|+++++.++.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--
Confidence 1 1111 1478999999886 33333 346789999999966554 455578899999999999998876
Q ss_pred HHHHhcCCCCCCEEEecCcC--Ch--hhhhhcCCccceEeccccc
Q 018106 301 FNHLISKFPSLEDLFVTRCC--LP--GKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 301 ~~~~~~~~~~L~~L~L~~c~--~~--~~i~~~~~~L~~L~l~~c~ 341 (360)
+. .+..+++|++|+|++|. .. ......+++|+.|+++++.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 33 57789999999999982 22 3344578899999998765
No 134
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.09 E-value=7.1e-07 Score=77.38 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=31.8
Q ss_pred ccCCchHHHHHHhcCCChhhhhhhcccccchhh
Q 018106 20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQ 52 (360)
Q Consensus 20 i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~ 52 (360)
|+.||+||+.+||+||+.+|++++++|||+||.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999995
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.02 E-value=2.8e-06 Score=70.30 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=18.3
Q ss_pred CCccEEEEEeecCCCcceeeccCCCCccEEEeeccccC
Q 018106 260 PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (360)
Q Consensus 260 p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (360)
++|++|+++.+......+..+..+++|+.|++.++.+.
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 44444444433222222223455667777777666543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.96 E-value=8.6e-06 Score=66.28 Aligned_cols=56 Identities=23% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---cccCCCccEEEeccc
Q 018106 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF 248 (360)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~l~~L~~L~l~~~ 248 (360)
++|++|.++++.++.-. ...+..+++|++|++.++.. ..+. +..+++|+.|+++++
T Consensus 28 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 28 SSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCC
Confidence 45566666555542111 11234556666666665532 1111 223445555555544
No 137
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.95 E-value=1.9e-06 Score=81.04 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=36.6
Q ss_pred ccccccCCchHHHHHHhcCCChhhhhhhcccccchhhhh
Q 018106 16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY 54 (360)
Q Consensus 16 ~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l~ 54 (360)
.+|.|+.||+|++.+||+||+.++++++++|||+|+++.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999998754
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.89 E-value=1.5e-05 Score=66.01 Aligned_cols=103 Identities=17% Similarity=-0.017 Sum_probs=47.3
Q ss_pred CCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc-chhhh-HhhcCCCccEEE
Q 018106 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLT 266 (360)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~ 266 (360)
++|++|.++++.++. +...+..+++|+.|++.++..... -.+.++++|+.|+++++. ..+.. ....+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 456666666665531 112345666677777666543211 113345566666666554 11110 011334455555
Q ss_pred EEeecCCCcceeeccCCCCccEEEeeccc
Q 018106 267 LLFYGARRPRVVEVARSPHLKKLDLVSVY 295 (360)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (360)
+..+.........+..+++|+.|++.++.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 44332221111123445566666665544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.89 E-value=2.4e-05 Score=63.59 Aligned_cols=124 Identities=12% Similarity=0.013 Sum_probs=78.9
Q ss_pred CCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc-chhhh-HhhcCCCccEEEE
Q 018106 192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTL 267 (360)
Q Consensus 192 ~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l 267 (360)
..+.+.+.++.+..-. ....+.|+.|++.++..... ..+..+++|++|++.++. ..+.. ....+++|+.|++
T Consensus 8 ~~~~l~~~~~~l~~~p----~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP----TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCC----TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCC----CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3566777666542111 12347899999998764221 123457899999998876 22211 1236788899998
Q ss_pred EeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcC
Q 018106 268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (360)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 320 (360)
+.+.........+..+++|+.|+++++.++.- ....+..+++|++|++++|+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence 86555433333356788999999988877642 23345678889999998873
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.86 E-value=5.4e-06 Score=82.93 Aligned_cols=108 Identities=11% Similarity=0.006 Sum_probs=55.1
Q ss_pred ccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc-chhhhHhhcCCCcc
Q 018106 187 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQ 263 (360)
Q Consensus 187 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~-~~~~~~~~~~p~L~ 263 (360)
...+++|+.|.|+++.+.. +..-+..+++|++|+|.+|... .+ .+..+++|+.|+++++. ..+......+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 3455667777776666531 1111235667777777666432 22 13345667777766664 11111112455666
Q ss_pred EEEEEeecCCCcceeeccCCCCccEEEeeccccCc
Q 018106 264 QLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD 298 (360)
Q Consensus 264 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 298 (360)
+|.++.+... ..+..+..+++|+.|+|+++.++.
T Consensus 297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 6666644332 233335566666666666666554
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.85 E-value=3.8e-05 Score=63.53 Aligned_cols=120 Identities=12% Similarity=0.040 Sum_probs=78.1
Q ss_pred CEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCcc--ccccCCCccEEEecccc-chhh-hHhhcCCCccEEEEEe
Q 018106 194 KKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLF 269 (360)
Q Consensus 194 ~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~l~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~ 269 (360)
+.+.++++.++. +.. .-.+.|++|++.++.. ..+ .+..+++|+.|+++++. ..+. .....+++|++|+++.
T Consensus 13 ~~l~~~~~~l~~--ip~--~~~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPK--GIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSS--CCS--CCCTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCc--CCC--CCCCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 556666655421 110 1246899999998754 322 34567899999998876 2222 1123678899999986
Q ss_pred ecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 270 YGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+.........+..+++|+.|++.++.++.- ....+..+++|++|++.++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCC
Confidence 555443334567888999999988877642 2234567888999999886
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=3.8e-05 Score=63.07 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=24.9
Q ss_pred ccCCCCccEEEe--eccccCcHH---HHHHhcCCCCCCEEEecCc
Q 018106 280 VARSPHLKKLDL--VSVYFADNE---FNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 280 ~~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~L~~c 319 (360)
+...++|++|+| .++.+++.. +.+.+...+.|++|+|++|
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 344566777777 666666644 3344455567777777766
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.83 E-value=2.2e-05 Score=64.92 Aligned_cols=124 Identities=15% Similarity=0.010 Sum_probs=75.9
Q ss_pred cEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEEecccc
Q 018106 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS 249 (360)
Q Consensus 172 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~l~~~~ 249 (360)
+.+++.++.+...+ ..-.++|++|.++++.++.-.....+..+++|++|++.++..... -.+..+++|+.|+++++.
T Consensus 11 ~~l~~s~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCC-SCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCc-cCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 56666666554322 112347888888888764222222356677888888877653221 123344566666655543
Q ss_pred chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 250 EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 250 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
........+..+++|+.|+++++.++... ...+..+++|++|++++|
T Consensus 90 ----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 90 ----------------------IKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ----------------------CCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTC
T ss_pred ----------------------CCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCC
Confidence 22112223567899999999999887532 334667899999999987
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=1.7e-05 Score=71.47 Aligned_cols=79 Identities=16% Similarity=0.110 Sum_probs=45.0
Q ss_pred cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCC-EEEecCc-C-ChhhhhhcCCccce
Q 018106 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE-DLFVTRC-C-LPGKIKISSNQLKN 334 (360)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~L~~c-~-~~~~i~~~~~~L~~ 334 (360)
.+++|+++++..+....-....+..|++|+.|.+..+ ++. .-...+.+|++|+ .+.+... . ........|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence 4777888877743332222234567778888887654 221 1122366777887 8887652 1 11233446677777
Q ss_pred Eecc
Q 018106 335 LLFR 338 (360)
Q Consensus 335 L~l~ 338 (360)
+++.
T Consensus 302 l~l~ 305 (329)
T 3sb4_A 302 VLAT 305 (329)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7763
No 145
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.76 E-value=3.4e-05 Score=70.10 Aligned_cols=178 Identities=12% Similarity=0.023 Sum_probs=110.8
Q ss_pred ccCcccccccCCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc---
Q 018106 159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--- 233 (360)
Q Consensus 159 ~~l~~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--- 233 (360)
..+|..+ .+++++|+|.++.+..-. ....+++|++|+|+++.+....-...+.++++|.++.+..+..+..+.
T Consensus 22 t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 22 TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 4555444 368999999998876332 356789999999999875211111235678888877666655555442
Q ss_pred cccCCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcce-eeccC-CCCccEEEeeccccCcHHHHHHhcCCC
Q 018106 234 VSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRV-VEVAR-SPHLKKLDLVSVYFADNEFNHLISKFP 309 (360)
Q Consensus 234 i~~l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~ 309 (360)
+..+++|+.|++.++. ..+.. ......++..+.+..+....... ..+.. ...++.|+++++.++.- ....-..+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i--~~~~f~~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI--HNSAFNGT 177 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CTTSSTTE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--Chhhcccc
Confidence 3567899999999885 11111 12344566777776322211111 11223 34688899998877541 11122346
Q ss_pred CCCEEEecCcCChhh----hhhcCCccceEecccc
Q 018106 310 SLEDLFVTRCCLPGK----IKISSNQLKNLLFRSC 340 (360)
Q Consensus 310 ~L~~L~L~~c~~~~~----i~~~~~~L~~L~l~~c 340 (360)
+|++|.+.++..++. +...+++|+.|++++.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 799999987644443 3456789999999876
No 146
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.73 E-value=1.6e-05 Score=74.29 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=36.8
Q ss_pred ccccccccCCchHHHHHHhcCCChhhhhhhcccccchhhh
Q 018106 14 VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53 (360)
Q Consensus 14 ~~~~d~i~~LPd~iL~~I~s~L~~~~~~~~~~vskrW~~l 53 (360)
....|.++.||+|++.+||+||+.++++++++|||+|+++
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 3367999999999999999999999999999999999863
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=3.5e-05 Score=69.32 Aligned_cols=97 Identities=12% Similarity=0.000 Sum_probs=57.4
Q ss_pred CCCccEEEecccc-chhhh-HhhcCCCccEEEEEeecCCCcceeeccCCCCcc-EEEeeccccCcHHHHHHhcCCCCCCE
Q 018106 237 ASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLK-KLDLVSVYFADNEFNHLISKFPSLED 313 (360)
Q Consensus 237 l~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~ 313 (360)
+++|+.+++..+. ..+.. ....+++|+++.+..+ ...-....+.+|++|+ .|.+.. .++. .-...+.+|++|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCE
Confidence 5788888888753 22222 2236778888888732 2111122357788898 888865 3321 11234678899999
Q ss_pred EEecCc---CChhhhhhcCCccceEe
Q 018106 314 LFVTRC---CLPGKIKISSNQLKNLL 336 (360)
Q Consensus 314 L~L~~c---~~~~~i~~~~~~L~~L~ 336 (360)
+++..+ .........+++|+.+.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 998654 11233445667777765
No 148
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.69 E-value=7.4e-06 Score=76.52 Aligned_cols=37 Identities=32% Similarity=0.628 Sum_probs=35.4
Q ss_pred ccccccCCchH----HHHHHhcCCChhhhhhhcccccchhh
Q 018106 16 AMDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQ 52 (360)
Q Consensus 16 ~~d~i~~LPd~----iL~~I~s~L~~~~~~~~~~vskrW~~ 52 (360)
..|.|+.||+| |+.+||+||+.++++++++|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 57999999999 99999999999999999999999984
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.67 E-value=1.2e-05 Score=80.37 Aligned_cols=146 Identities=16% Similarity=0.078 Sum_probs=77.8
Q ss_pred CCccEEEEeeeeccCCCCccCCCCCCEEEeeeEEeChH--------HHHHHHhcCCcccEEEeecCCCCCc-cccccCCC
Q 018106 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQ--------MVQKLASECPLLEDLCFSNCWGLKH-LCVSKASK 239 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--------~l~~l~~~cp~Le~L~l~~c~~~~~-~~i~~l~~ 239 (360)
++++.|+|.++.+.... -..|+.+.|+.+.+... .....+..++.|+.|+|.+|..... ..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~----~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN----QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcch----hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 56788888776655322 12244444444433111 2234467889999999999864321 12346789
Q ss_pred ccEEEecccc-chhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106 240 LKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (360)
Q Consensus 240 L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 318 (360)
|++|+++++. ..+..-...+++|+.|+++.+... ..+..+..+++|+.|+|+++.++. +...+..+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCC
Confidence 9999999886 222222246789999999966554 455667889999999999888753 233367889999999999
Q ss_pred cCC
Q 018106 319 CCL 321 (360)
Q Consensus 319 c~~ 321 (360)
|..
T Consensus 326 N~l 328 (727)
T 4b8c_D 326 NPL 328 (727)
T ss_dssp SCC
T ss_pred Ccc
Confidence 844
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.37 E-value=0.00016 Score=59.31 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=75.5
Q ss_pred hHHHHHHHhcCCcccEEEeecCCCCCccc-------cccCCCccEEEeccccchhhhHhhcCCCccEEEEEeecCCCcce
Q 018106 205 EQMVQKLASECPLLEDLCFSNCWGLKHLC-------VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV 277 (360)
Q Consensus 205 ~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-------i~~l~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~ 277 (360)
.+.+..++..++.|++|+|.+|..++... +...++|++|+++++.-.-.... ...
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~------------------~l~ 86 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF------------------ALA 86 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH------------------HHH
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH------------------HHH
Confidence 35577788899999999999883343211 12236677777766651100000 001
Q ss_pred eeccCCCCccEEEeeccccCcHHHHH---HhcCCCCCCEEEe--cCcCC-------hhhhhhcCCccceEeccccc
Q 018106 278 VEVARSPHLKKLDLVSVYFADNEFNH---LISKFPSLEDLFV--TRCCL-------PGKIKISSNQLKNLLFRSCK 341 (360)
Q Consensus 278 ~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~L--~~c~~-------~~~i~~~~~~L~~L~l~~c~ 341 (360)
..+...++|++|+|+++.+++..... .+...+.|++|+| ++|.. +.......++|+.|+++++.
T Consensus 87 ~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 87 EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 11234578999999999998865444 4566789999999 66632 22333456899999998764
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.37 E-value=0.00029 Score=65.22 Aligned_cols=80 Identities=10% Similarity=0.035 Sum_probs=38.5
Q ss_pred cCCCccEEEEEeecCC-----CcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc-C-ChhhhhhcCC
Q 018106 258 SVPSLQQLTLLFYGAR-----RPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC-C-LPGKIKISSN 330 (360)
Q Consensus 258 ~~p~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c-~-~~~~i~~~~~ 330 (360)
.|++|+.+.+...... .-....+..|++|+.+.+... ++.- -...+.+|++|+.+.|... . ........+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I-~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~- 345 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRIL-GQGLLGGNRKVTQLTIPANVTQINFSAFNNT- 345 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCCSCCEEEECTTCCEECTTSSSSS-
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEE-hhhhhcCCCCccEEEECccccEEcHHhCCCC-
Confidence 5666666666522111 001112455667777766532 2110 1123556677777777543 1 112223345
Q ss_pred ccceEecccc
Q 018106 331 QLKNLLFRSC 340 (360)
Q Consensus 331 ~L~~L~l~~c 340 (360)
+|+.+.+.+.
T Consensus 346 ~L~~l~l~~n 355 (401)
T 4fdw_A 346 GIKEVKVEGT 355 (401)
T ss_dssp CCCEEEECCS
T ss_pred CCCEEEEcCC
Confidence 6777777543
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.24 E-value=0.00026 Score=57.04 Aligned_cols=80 Identities=13% Similarity=-0.021 Sum_probs=50.0
Q ss_pred CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEE
Q 018106 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME 244 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~ 244 (360)
++|+.|++.++.+.... ....+++|++|.|+++.++.-. ...+..+++|+.|+|.++..... -.+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 67788888887765432 3456778888888887763211 12345677888888877653221 1133457777777
Q ss_pred ecccc
Q 018106 245 IRSFS 249 (360)
Q Consensus 245 l~~~~ 249 (360)
+.++.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 77654
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.22 E-value=0.00029 Score=57.05 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=45.0
Q ss_pred CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCc--cccccCCCccEEE
Q 018106 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME 244 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~i~~l~~L~~L~ 244 (360)
++|+.|++.++.+.... ....+++|+.|.|+++.++.-. ...+..+++|+.|+|.++..... -.+..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 66777777777665332 3445677777777777663211 11245567777777776643211 1133456666666
Q ss_pred ecccc
Q 018106 245 IRSFS 249 (360)
Q Consensus 245 l~~~~ 249 (360)
+.++.
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 66554
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.13 E-value=0.00055 Score=55.13 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=19.8
Q ss_pred cCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 281 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
..+++|+.|+++++.++.- ....+..+++|++|+|++|
T Consensus 75 ~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCccCEe-CHHHhcCCCCCCEEEeCCC
Confidence 4555666666655554431 1122445566666666655
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.93 E-value=0.00067 Score=54.86 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=64.5
Q ss_pred cEEEeecCCCCCccccccCCCccEEEecccc-chh-hhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeecccc
Q 018106 219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (360)
Q Consensus 219 e~L~l~~c~~~~~~~i~~l~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (360)
..+++.++. ++.+...-.++|+.|+++++. ..+ ......+++|+.|+++.+....-....+..+++|+.|+++++.+
T Consensus 15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 455555443 233322223789999999886 222 12233678999999996655432223357889999999998887
Q ss_pred CcHHHHHHhcCCCCCCEEEecCc
Q 018106 297 ADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+.- ....+..+++|++|+|++|
T Consensus 94 ~~l-~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 94 KSI-PRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCC-CTTTTTTCTTCSEEECCSS
T ss_pred cee-CHHHhccccCCCEEEeCCC
Confidence 642 2234667899999999987
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.89 E-value=0.00073 Score=62.50 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=69.0
Q ss_pred CCccEEEEeeeecc--CCCCccCCCCCCEEEeeeEEe---ChHHHHHHHhcCCcccEEEeecCC-CCCccccccCCCccE
Q 018106 169 NSVTNLRLVWCRLE--QPFDSIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCW-GLKHLCVSKASKLKI 242 (360)
Q Consensus 169 ~~L~~L~L~~~~~~--~~~~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~-~~~~~~i~~l~~L~~ 242 (360)
.+|+.+.+.. .+. .......|++|+.+.+..+.+ ....+. |+.|+.+.+...- .+..-...++++|+.
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVTLKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTTCCEECTTTTTTCTTCCC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCchheehhhHhhCCCCCCE
Confidence 3566666554 111 111344566666666654332 222221 4566666664321 111222234456666
Q ss_pred EEeccccchhhhHhhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCc----HHHHHHhcCCCCCCEEEecC
Q 018106 243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD----NEFNHLISKFPSLEDLFVTR 318 (360)
Q Consensus 243 L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~L~~ 318 (360)
+.+...-..+..-.....+|+.+.+. .....-....+..|++|+.+.+.++.... ......+.+|++|+.+.|..
T Consensus 231 l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 231 IEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred EecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 66643221121112222456666654 11111111234556666666665443220 01122345566666666654
Q ss_pred c-C-ChhhhhhcCCccceEec
Q 018106 319 C-C-LPGKIKISSNQLKNLLF 337 (360)
Q Consensus 319 c-~-~~~~i~~~~~~L~~L~l 337 (360)
. . ........|.+|+.+.+
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEE
T ss_pred ceEEEhhhhhcCCCCccEEEE
Confidence 2 0 11122234555666555
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.33 E-value=0.0025 Score=55.19 Aligned_cols=80 Identities=24% Similarity=0.206 Sum_probs=50.7
Q ss_pred hcCCCccEEEEEeecCCC--cceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecCcCChh----------h
Q 018106 257 ISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG----------K 324 (360)
Q Consensus 257 ~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~~~----------~ 324 (360)
..+|+|++|.++.+.... .....+..+++|+.|+|+++.+.+..-..-+..+ +|++|.|.+|+... .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 457788888888554433 2222345788888888888887664212223333 88899988875432 2
Q ss_pred hhhcCCccceEec
Q 018106 325 IKISSNQLKNLLF 337 (360)
Q Consensus 325 i~~~~~~L~~L~l 337 (360)
+...+|+|+.|+=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4456788887763
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.29 E-value=0.0028 Score=54.86 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=18.3
Q ss_pred CCCCCEEEeeeEEe-ChHHHHHHHhcCCcccEEEeecCC
Q 018106 190 LCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCW 227 (360)
Q Consensus 190 ~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~ 227 (360)
+|+|++|.|+++.+ +-..+...+..+|+|+.|+|.++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 45555555555554 222333334455555555555543
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.03 E-value=0.0049 Score=55.42 Aligned_cols=88 Identities=20% Similarity=0.106 Sum_probs=59.5
Q ss_pred cccCcccccccCCccEEEEee-eeccCCC--CccCCCCCCEEEeeeEEeChHHHHHHHhcCCcccEEEeecCCCCCccc-
Q 018106 158 VYTLPQAIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC- 233 (360)
Q Consensus 158 ~~~l~~~l~~~~~L~~L~L~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~- 233 (360)
...+|. +...++|+.|+|.+ +.+.... ....+++|+.|.|+++.++.-. ...+..+++|+.|+|.++.. ..+.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l-~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL-ESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC-SCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCcc-ceeCH
Confidence 345666 66778899999986 7665332 3557889999999998774321 12357789999999988754 3222
Q ss_pred --cccCCCccEEEecccc
Q 018106 234 --VSKASKLKIMEIRSFS 249 (360)
Q Consensus 234 --i~~l~~L~~L~l~~~~ 249 (360)
... .+|+.|.+.++.
T Consensus 98 ~~~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQG-LSLQELVLSGNP 114 (347)
T ss_dssp TTTCS-CCCCEEECCSSC
T ss_pred HHccc-CCceEEEeeCCC
Confidence 122 248899888665
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.71 E-value=0.014 Score=52.44 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=32.0
Q ss_pred ccCCCCCCEEEeee-EEeChHHHHHHHhcCCcccEEEeecCCCCCcc---ccccCCCccEEEecccc
Q 018106 187 SIMLCSLKKLTLER-VCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSFS 249 (360)
Q Consensus 187 ~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~l~~L~~L~l~~~~ 249 (360)
...+++|++|.|++ +.++.-.- ..+.++++|+.|+|.++.. ..+ .+.++++|+.|+++++.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEECCSSC
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCCEEeCCCCc
Confidence 34455677777764 55421111 1245567777777776642 221 12345666666666553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.12 E-value=0.059 Score=44.16 Aligned_cols=44 Identities=7% Similarity=0.147 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCcccEEEeecCCCCCccc-------cccCCCccEEEecccc
Q 018106 206 QMVQKLASECPLLEDLCFSNCWGLKHLC-------VSKASKLKIMEIRSFS 249 (360)
Q Consensus 206 ~~l~~l~~~cp~Le~L~l~~c~~~~~~~-------i~~l~~L~~L~l~~~~ 249 (360)
+.+..++...+.|++|+|.++..++... +..-..|+.|++.+|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence 4566666777777777776642332211 1111466667766664
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.34 E-value=0.069 Score=48.83 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=42.5
Q ss_pred cCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccc--cCcHHHHHHhcCCCCCCEEEecCc-C-ChhhhhhcCCccc
Q 018106 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY--FADNEFNHLISKFPSLEDLFVTRC-C-LPGKIKISSNQLK 333 (360)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~c-~-~~~~i~~~~~~L~ 333 (360)
.+.+|+.+.+.. +...-....+.+|.+|+.+.|...- +... .+.+|.+|+.+++... . ........|++|+
T Consensus 295 ~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 295 GCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYLVEEIGKR----SFRGCTSLSNINFPLSLRKIGANAFQGCINLK 369 (394)
T ss_dssp TCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTTBTTCTTCC
T ss_pred cccccccccccc-ccceechhhhcCCCCCCEEEeCCcccEEhHH----hccCCCCCCEEEECccccEehHHHhhCCCCCC
Confidence 566777777651 1110011235667888888774321 2222 3567888888888653 1 1223345677888
Q ss_pred eEecc
Q 018106 334 NLLFR 338 (360)
Q Consensus 334 ~L~l~ 338 (360)
.+++.
T Consensus 370 ~i~lp 374 (394)
T 4fs7_A 370 KVELP 374 (394)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88775
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.21 E-value=0.16 Score=46.46 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=7.6
Q ss_pred hcCCCCCCEEEecC
Q 018106 305 ISKFPSLEDLFVTR 318 (360)
Q Consensus 305 ~~~~~~L~~L~L~~ 318 (360)
+.+|++|+.+++.+
T Consensus 353 F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 353 FSNCTALNNIEYSG 366 (394)
T ss_dssp GTTCTTCCEEEESS
T ss_pred hhCCCCCCEEEECC
Confidence 44555555555554
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.84 E-value=0.077 Score=48.51 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=32.4
Q ss_pred ccCCCCccEEEeeccc--cCcHHHHHHhcCCCCCCEEEecCc-CC-hhhhhhcCCccceEecc
Q 018106 280 VARSPHLKKLDLVSVY--FADNEFNHLISKFPSLEDLFVTRC-CL-PGKIKISSNQLKNLLFR 338 (360)
Q Consensus 280 ~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~c-~~-~~~i~~~~~~L~~L~l~ 338 (360)
+..+.+|+.+.+...- +.+. .+.+|.+|+.++|... .. .......|.+|+.+.+.
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccccccccccceechh----hhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEEC
Confidence 3467788888775321 2222 3667888998888653 11 12233456777777763
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.75 E-value=0.49 Score=38.65 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=21.6
Q ss_pred CCCCEEEeeeE-EeChHHHHHH---HhcCCcccEEEeecCCC
Q 018106 191 CSLKKLTLERV-CLDEQMVQKL---ASECPLLEDLCFSNCWG 228 (360)
Q Consensus 191 ~~L~~L~L~~~-~~~~~~l~~l---~~~cp~Le~L~l~~c~~ 228 (360)
+.|+.|+|+++ .+++++...+ +.....|+.|+|.+|..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 45666666554 5555543333 34566777777776653
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.72 E-value=0.2 Score=45.67 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=67.1
Q ss_pred cCCCCCCEEEeeeEE--eChHHHHHHHhcCCcccEEEeecC-CCCCccccccCCCccEEEeccccchhhhH-hhcCCCcc
Q 018106 188 IMLCSLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRSFSEEIEIV-EISVPSLQ 263 (360)
Q Consensus 188 ~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c-~~~~~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~p~L~ 263 (360)
..|.+|+.+.+.... ++.. .+.+|+.|+.+.+... ..+..-...+|.+|+.+.+...-..+..- ...|.+|+
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred eecccccEEecccccceecCc----ccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence 456777777774332 2322 2456888888887532 11223334457889999886432122222 23678999
Q ss_pred EEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEEecC
Q 018106 264 QLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (360)
Q Consensus 264 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 318 (360)
++.+.. ....-....+.+|.+|+.+.+.++... ...+..+.+|+.+.+..
T Consensus 338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC-------
T ss_pred EEEECc-ccCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCC
Confidence 998861 111112234678999999999765322 23356678888887754
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.33 E-value=0.87 Score=41.01 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=44.4
Q ss_pred CCCccEEEeccccchhhhH-hhcCCCccEEEEEeecCCCcceeeccCCCCccEEEeeccccCcHHHHHHhcCCCCCCEEE
Q 018106 237 ASKLKIMEIRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF 315 (360)
Q Consensus 237 l~~L~~L~l~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 315 (360)
+..|+.+.+...-..+... ...+.+|+.+.+.. ....-....+..|++|+.+.+.++.++.- -...+.+|.+|+.+.
T Consensus 239 ~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 239 MKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETL-EPRVFMDCVKLSSVT 316 (379)
T ss_dssp CSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEE-CTTTTTTCTTCCEEE
T ss_pred CccceEEEcCCCccEeCccccceeehhccccccc-cceecccccccccccccccccccccccee-hhhhhcCCCCCCEEE
Confidence 4556666554322111111 12455566666541 11111111245667777777754432210 011355677777777
Q ss_pred ecCc-CCh-hhhhhcCCccceEec
Q 018106 316 VTRC-CLP-GKIKISSNQLKNLLF 337 (360)
Q Consensus 316 L~~c-~~~-~~i~~~~~~L~~L~l 337 (360)
|... ..+ ......|.+|+.+.+
T Consensus 317 lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 317 LPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCCCCC
T ss_pred cCccccEEHHHHhhCCCCCCEEEE
Confidence 7542 111 122334556666555
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=83.18 E-value=1.1 Score=40.36 Aligned_cols=103 Identities=7% Similarity=0.077 Sum_probs=62.0
Q ss_pred HhcCCcccEEEeecCC-CCCccccccCCCccEEEeccccchhh-hHhhcCCCccEEEEEeecCCCcceeeccCCCCccEE
Q 018106 212 ASECPLLEDLCFSNCW-GLKHLCVSKASKLKIMEIRSFSEEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL 289 (360)
Q Consensus 212 ~~~cp~Le~L~l~~c~-~~~~~~i~~l~~L~~L~l~~~~~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 289 (360)
+.+|..|+.+.+...- .+.......+.+|+.+.+......+. .....|++|+.+.+.......-..-.+.+|.+|+.+
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 4567888888875431 12223334567888888864431222 123477899999886322211112246788999999
Q ss_pred Eeecc--ccCcHHHHHHhcCCCCCCEEEecC
Q 018106 290 DLVSV--YFADNEFNHLISKFPSLEDLFVTR 318 (360)
Q Consensus 290 ~l~~~--~~~~~~~~~~~~~~~~L~~L~L~~ 318 (360)
.|... .+... .+.+|.+|+++.|..
T Consensus 316 ~lp~~l~~I~~~----aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 316 TLPTALKTIQVY----AFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTTCCEECTT----TTTTCTTCCCCCCCT
T ss_pred EcCccccEEHHH----HhhCCCCCCEEEECC
Confidence 99532 13333 367889999998865
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=52.21 E-value=5.6 Score=29.71 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=16.1
Q ss_pred CccEEEeeccccCcHHHHHHhcCCCCCCEEEecCc
Q 018106 285 HLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (360)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 319 (360)
+|+.|+|+++.++.- ....+..+++|++|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTAL-PPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCcc-ChhhhhhccccCEEEecCC
Confidence 455555555544321 1222444555555555554
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=50.13 E-value=7 Score=29.14 Aligned_cols=35 Identities=20% Similarity=-0.063 Sum_probs=21.7
Q ss_pred CCccEEEEeeeeccCCC--CccCCCCCCEEEeeeEEe
Q 018106 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL 203 (360)
Q Consensus 169 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~ 203 (360)
++|+.|+|.++.+.... ....+++|+.|.|.++.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 45777777777665332 334566777777776665
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.83 E-value=53 Score=22.98 Aligned_cols=10 Identities=0% Similarity=0.255 Sum_probs=4.6
Q ss_pred cCCcccEEEe
Q 018106 214 ECPLLEDLCF 223 (360)
Q Consensus 214 ~cp~Le~L~l 223 (360)
+|..|+++.|
T Consensus 18 ~c~~L~~i~i 27 (100)
T 2lz0_A 18 GNTVIREITV 27 (100)
T ss_dssp TCTTCCCEEE
T ss_pred CCCCCcEEEc
Confidence 3444444444
Done!