BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018107
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 73/114 (64%), Gaps = 14/114 (12%)
Query: 35 AGP---PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSF 91
AGP P FLTK + +V D +T+ +I WS NSF V+D F+ +LPKYFKHNN +SF
Sbjct: 12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 92 VRQLNTYGFRK---------VDPDR--WEFANEGFLRGQRHLLKNIRRRKTTQS 134
VRQLN YGFRK V P+R EF + FLRGQ LL+NI+R+ T+ S
Sbjct: 72 VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVS 125
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 10/105 (9%)
Query: 35 AGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQ 94
+G P FL K + +V+D +TN +I W++ SFV+ + F+ LLP +KHNN +SF+RQ
Sbjct: 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61
Query: 95 LNTYGFRKV----------DPDRWEFANEGFLRGQRHLLKNIRRR 129
LN YGF K+ D D EF++ F R LL I+R+
Sbjct: 62 LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 29 REGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNF 88
R + P F+ K + +V D + I WS S VV + + F +LPKYFKH+NF
Sbjct: 4 RASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNF 63
Query: 89 SSFVRQLNTYGFRKV-----------DPDRWEFANE 113
+SFVRQLN YG+ KV + RWEF NE
Sbjct: 64 ASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
P F+ K + +V D + I WS S VV + + F +LPKYFKH+NF+SFVRQLN
Sbjct: 3 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 98 YGFRKV-----------DPDRWEFANE 113
YG+ KV + RWEF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
P F+ K + +V D + I WS S VV + + F +LPKYFKH+NF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 98 YGFRKV-----------DPDRWEFANE 113
YG+ KV + RWEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
Length = 92
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
P F+ K + V D + I WS S VV + + F +LPKYFKH+NF+SFVRQLN
Sbjct: 3 PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 98 YGFRKV-----------DPDRWEFANE 113
YG+ KV + RWEF NE
Sbjct: 63 YGWHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
P F+ K + +V D + I WS S VV + + F +L KYFKH+NF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 98 YGFRKV-----------DPDRWEFANE 113
YG+ KV + RWEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
P F+ K + +V D + I WS S VV + + F +L KYFKH+NF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 98 YGFRKV-----------DPDRWEFANE 113
YG+ KV + RWEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|3HJZ|A Chain A, The Structure Of An Aldolase From Prochlorococcus Marinus
Length = 334
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 56 IISWSR---GSNSFV-VWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFA 111
I+ W + G SF+ DP S+T + KYFK F + ++ FR +D + E A
Sbjct: 186 ILDWHKAKTGKTSFIGAEDPGVISVTQIYKYFKEKGFKT---EVXGASFRNLDEIK-ELA 241
Query: 112 NEGFLRGQRHLLKNIRRRK 130
L L+ ++R K
Sbjct: 242 GCDLLTIAPKFLEELKREK 260
>pdb|4AUE|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 717
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 262 VKIEPEEYGDLAELGLSELDR 282
KI PEEY L +LGL +LDR
Sbjct: 330 TKIIPEEYAPLTKLGLLKLDR 350
>pdb|4AUM|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 262 VKIEPEEYGDLAELGLSELDR 282
KI PEEY L +LGL +LDR
Sbjct: 332 TKIIPEEYAPLTKLGLLKLDR 352
>pdb|4AUL|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 262 VKIEPEEYGDLAELGLSELDR 282
KI PEEY L +LGL +LDR
Sbjct: 332 TKIIPEEYAPLTKLGLLKLDR 352
>pdb|4AUN|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|E Chain E, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|F Chain F, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|G Chain G, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|H Chain H, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 262 VKIEPEEYGDLAELGLSELDR 282
KI PEEY L +LGL +LDR
Sbjct: 332 TKIIPEEYAPLTKLGLLKLDR 352
>pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785
pdb|2EPG|B Chain B, Crystal Structure Of Ttha1785
Length = 487
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 288 QARLSERQRNPDDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGDENVRL 347
QA+ R+RN E ERG + + T+D+ E + + + E + G G G + RL
Sbjct: 420 QAKKVARERNLVKELAERGILVRAATRATVDEEXPEAYKDVSLVVEAVEGAGIGKKVARL 479
>pdb|2QK7|B Chain B, A Covalent S-f Heterodimer Of Staphylococcal
Gamma-hemolysin
Length = 307
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 199 QHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQ 242
QH M L+R+ NP F+ L+ ++D K+ + + +R + Q
Sbjct: 218 QHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQ 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,669,946
Number of Sequences: 62578
Number of extensions: 442148
Number of successful extensions: 1013
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 28
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)