Query 018107
Match_columns 360
No_of_seqs 286 out of 1042
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 7E-47 1.5E-51 365.7 9.7 187 36-222 11-209 (304)
2 smart00415 HSF heat shock fact 100.0 4.6E-35 1E-39 244.5 6.4 94 36-129 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 4E-35 8.7E-40 243.1 4.2 93 39-131 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 6.7E-33 1.5E-37 266.9 6.9 142 36-177 9-169 (282)
5 PF03310 Cauli_DNA-bind: Cauli 97.4 0.00084 1.8E-08 58.2 8.1 79 164-245 2-80 (121)
6 PF00178 Ets: Ets-domain; Int 95.6 0.0055 1.2E-07 50.1 1.4 69 42-110 6-80 (85)
7 smart00413 ETS erythroblast tr 93.2 0.08 1.7E-06 43.7 2.9 56 44-99 8-65 (87)
8 KOG3806 Predicted transcriptio 87.9 0.84 1.8E-05 42.2 4.7 62 37-98 68-131 (177)
9 PF11932 DUF3450: Protein of u 82.6 12 0.00026 35.6 10.1 60 151-210 53-112 (251)
10 PRK15422 septal ring assembly 82.6 5.6 0.00012 32.3 6.5 42 152-193 23-71 (79)
11 PF06005 DUF904: Protein of un 82.2 9.7 0.00021 30.3 7.7 42 152-193 23-64 (72)
12 PF02183 HALZ: Homeobox associ 80.3 7.4 0.00016 28.3 5.9 40 152-191 3-42 (45)
13 TIGR02449 conserved hypothetic 79.1 7.8 0.00017 30.4 6.1 40 157-196 17-63 (65)
14 PF04340 DUF484: Protein of un 78.9 8.8 0.00019 35.9 7.7 77 111-214 17-93 (225)
15 TIGR03752 conj_TIGR03752 integ 76.8 17 0.00036 38.5 9.6 56 151-206 70-126 (472)
16 PF10168 Nup88: Nuclear pore c 74.9 15 0.00032 40.9 9.1 61 151-211 562-622 (717)
17 COG3074 Uncharacterized protei 74.7 22 0.00047 28.6 7.5 30 152-181 23-52 (79)
18 PF06005 DUF904: Protein of un 74.0 15 0.00033 29.2 6.6 21 156-176 13-33 (72)
19 PF10473 CENP-F_leu_zip: Leuci 73.3 27 0.00059 31.2 8.8 59 151-209 56-114 (140)
20 PF09726 Macoilin: Transmembra 72.0 27 0.00059 38.7 10.3 26 151-176 422-447 (697)
21 PF04111 APG6: Autophagy prote 70.8 62 0.0014 32.3 11.7 51 151-201 47-97 (314)
22 PF02183 HALZ: Homeobox associ 69.1 12 0.00026 27.1 4.6 33 152-184 10-42 (45)
23 TIGR02894 DNA_bind_RsfA transc 68.3 35 0.00075 31.3 8.4 53 156-208 99-151 (161)
24 PF12325 TMF_TATA_bd: TATA ele 68.0 39 0.00085 29.4 8.4 53 151-203 34-89 (120)
25 PF14282 FlxA: FlxA-like prote 60.8 55 0.0012 27.5 7.8 25 151-175 16-40 (106)
26 PF14817 HAUS5: HAUS augmin-li 60.4 88 0.0019 34.5 11.2 54 152-205 84-137 (632)
27 PRK06800 fliH flagellar assemb 60.3 1.3E+02 0.0028 28.6 10.7 75 154-228 38-132 (228)
28 KOG4460 Nuclear pore complex, 60.2 39 0.00084 36.8 8.1 62 151-212 585-646 (741)
29 KOG4005 Transcription factor X 59.1 46 0.001 32.6 7.8 54 151-204 94-152 (292)
30 PF11932 DUF3450: Protein of u 58.5 1E+02 0.0022 29.3 10.3 55 152-206 47-101 (251)
31 PF07106 TBPIP: Tat binding pr 57.8 83 0.0018 28.1 9.0 27 152-178 77-103 (169)
32 PF12329 TMF_DNA_bd: TATA elem 54.5 97 0.0021 24.5 7.8 51 154-204 19-69 (74)
33 PF10779 XhlA: Haemolysin XhlA 53.8 1E+02 0.0022 23.9 9.0 56 152-207 4-59 (71)
34 COG5481 Uncharacterized conser 53.5 86 0.0019 24.5 7.0 28 162-189 5-32 (67)
35 PF04728 LPP: Lipoprotein leuc 53.4 84 0.0018 24.1 6.9 42 152-193 8-49 (56)
36 PF11414 Suppressor_APC: Adeno 51.3 48 0.001 27.2 5.7 44 151-194 4-47 (84)
37 TIGR02449 conserved hypothetic 51.1 1.2E+02 0.0026 23.8 8.9 57 151-207 4-60 (65)
38 smart00338 BRLZ basic region l 50.9 41 0.00088 25.4 5.0 32 151-182 30-61 (65)
39 KOG4196 bZIP transcription fac 50.6 53 0.0011 29.3 6.2 33 157-189 77-109 (135)
40 PF08826 DMPK_coil: DMPK coile 50.5 1.2E+02 0.0025 23.6 7.4 45 152-200 6-50 (61)
41 TIGR02132 phaR_Bmeg polyhydrox 50.1 93 0.002 29.2 8.0 58 151-208 83-140 (189)
42 PF07676 PD40: WD40-like Beta 49.9 13 0.00028 24.8 1.9 24 46-69 3-26 (39)
43 PRK10963 hypothetical protein; 48.5 79 0.0017 29.8 7.6 76 111-214 14-90 (223)
44 TIGR00219 mreC rod shape-deter 48.3 54 0.0012 32.2 6.7 26 154-179 66-91 (283)
45 PF07200 Mod_r: Modifier of ru 47.8 1.9E+02 0.0041 25.1 9.7 64 154-222 41-104 (150)
46 COG3074 Uncharacterized protei 47.8 1.3E+02 0.0028 24.3 7.4 49 153-201 10-58 (79)
47 PF10473 CENP-F_leu_zip: Leuci 47.3 1.6E+02 0.0035 26.3 8.9 51 151-201 70-120 (140)
48 PRK09039 hypothetical protein; 46.9 1.1E+02 0.0024 30.9 8.7 45 153-197 122-166 (343)
49 PF08614 ATG16: Autophagy prot 46.7 1.7E+02 0.0036 26.9 9.3 32 170-201 146-177 (194)
50 PRK09039 hypothetical protein; 46.5 1.1E+02 0.0024 30.9 8.7 58 152-209 128-185 (343)
51 PRK14127 cell division protein 46.3 52 0.0011 28.3 5.4 42 154-195 30-71 (109)
52 PF00170 bZIP_1: bZIP transcri 46.0 60 0.0013 24.5 5.2 29 152-180 31-59 (64)
53 COG1579 Zn-ribbon protein, pos 45.7 80 0.0017 30.7 7.2 47 152-198 36-82 (239)
54 PF05377 FlaC_arch: Flagella a 45.6 87 0.0019 23.9 5.9 31 161-191 7-37 (55)
55 PRK11637 AmiB activator; Provi 43.8 1.4E+02 0.003 30.7 9.1 32 162-193 90-121 (428)
56 PF11559 ADIP: Afadin- and alp 43.6 2.2E+02 0.0048 24.8 10.6 11 93-103 9-19 (151)
57 PRK00295 hypothetical protein; 43.1 1.3E+02 0.0027 23.5 6.7 30 164-193 22-51 (68)
58 PRK00888 ftsB cell division pr 43.1 81 0.0017 26.6 6.1 31 155-185 28-58 (105)
59 PF04102 SlyX: SlyX; InterPro 43.0 84 0.0018 24.4 5.8 42 153-194 10-51 (69)
60 PRK00846 hypothetical protein; 42.6 1.1E+02 0.0025 24.7 6.5 10 182-191 48-57 (77)
61 PRK10884 SH3 domain-containing 42.6 78 0.0017 29.9 6.5 29 98-126 65-95 (206)
62 PRK15422 septal ring assembly 42.5 71 0.0015 26.1 5.3 18 162-179 19-36 (79)
63 PF08317 Spc7: Spc7 kinetochor 42.5 1.6E+02 0.0034 29.3 9.0 46 155-200 210-255 (325)
64 smart00787 Spc7 Spc7 kinetocho 41.8 1.7E+02 0.0038 29.3 9.2 52 154-205 204-255 (312)
65 PF02403 Seryl_tRNA_N: Seryl-t 41.3 1.6E+02 0.0034 24.2 7.5 47 151-197 40-96 (108)
66 PF12329 TMF_DNA_bd: TATA elem 40.9 89 0.0019 24.7 5.7 32 166-197 17-48 (74)
67 PF04156 IncA: IncA protein; 40.6 2.2E+02 0.0047 25.6 8.9 59 151-209 92-150 (191)
68 PF05524 PEP-utilisers_N: PEP- 40.3 77 0.0017 26.6 5.6 55 169-223 36-91 (123)
69 PRK00736 hypothetical protein; 40.0 1.4E+02 0.0029 23.4 6.5 28 164-191 22-49 (68)
70 PRK11637 AmiB activator; Provi 39.7 1.7E+02 0.0037 30.0 9.1 16 158-173 93-108 (428)
71 PF10224 DUF2205: Predicted co 39.4 2.1E+02 0.0046 23.3 9.1 47 155-201 9-56 (80)
72 COG3883 Uncharacterized protei 38.9 2.4E+02 0.0051 28.0 9.4 10 201-210 102-111 (265)
73 COG2433 Uncharacterized conser 38.7 3E+02 0.0064 30.5 10.7 47 151-197 426-472 (652)
74 KOG0977 Nuclear envelope prote 37.9 2.7E+02 0.0058 30.4 10.3 66 151-216 166-244 (546)
75 KOG3863 bZIP transcription fac 37.6 58 0.0013 35.6 5.4 59 113-176 479-540 (604)
76 PF10226 DUF2216: Uncharacteri 37.6 1.9E+02 0.0042 27.3 8.1 23 153-175 54-76 (195)
77 PRK10803 tol-pal system protei 37.5 2.4E+02 0.0053 27.3 9.3 33 169-201 62-94 (263)
78 PF11559 ADIP: Afadin- and alp 37.5 2.8E+02 0.006 24.2 9.8 40 154-193 59-98 (151)
79 COG1579 Zn-ribbon protein, pos 37.2 1.1E+02 0.0024 29.7 6.8 47 151-197 93-139 (239)
80 PF09726 Macoilin: Transmembra 36.8 1.6E+02 0.0036 32.8 8.8 53 158-211 542-601 (697)
81 PF13094 CENP-Q: CENP-Q, a CEN 35.9 2.1E+02 0.0045 25.4 7.9 22 165-186 45-66 (160)
82 PF10211 Ax_dynein_light: Axon 35.3 2E+02 0.0043 26.6 7.9 26 152-177 125-150 (189)
83 PF07407 Seadorna_VP6: Seadorn 35.1 88 0.0019 32.1 5.8 28 149-176 34-61 (420)
84 PF04880 NUDE_C: NUDE protein, 34.9 21 0.00046 32.8 1.4 37 152-193 19-55 (166)
85 PF08581 Tup_N: Tup N-terminal 34.3 2.5E+02 0.0054 22.7 8.1 48 154-201 4-58 (79)
86 PRK13182 racA polar chromosome 34.2 1.3E+02 0.0028 27.7 6.5 45 152-198 97-141 (175)
87 COG3159 Uncharacterized protei 33.1 1.3E+02 0.0029 28.9 6.4 78 108-212 12-89 (218)
88 PRK13729 conjugal transfer pil 32.4 2.4E+02 0.0051 30.2 8.7 43 163-205 78-120 (475)
89 PF04977 DivIC: Septum formati 32.4 1.3E+02 0.0029 22.7 5.4 10 210-219 52-61 (80)
90 COG4942 Membrane-bound metallo 32.1 2.6E+02 0.0056 29.5 8.8 42 152-193 64-105 (420)
91 PF04977 DivIC: Septum formati 32.0 2.2E+02 0.0047 21.5 6.6 30 156-185 19-48 (80)
92 PF12718 Tropomyosin_1: Tropom 31.8 2.3E+02 0.0049 25.1 7.4 39 155-193 22-60 (143)
93 PF07888 CALCOCO1: Calcium bin 31.7 1.8E+02 0.0039 31.6 7.9 9 73-81 76-84 (546)
94 COG1382 GimC Prefoldin, chaper 31.7 1.7E+02 0.0036 25.7 6.3 42 151-192 67-108 (119)
95 PF10805 DUF2730: Protein of u 31.3 2.8E+02 0.006 23.3 7.5 42 160-201 48-91 (106)
96 PF07716 bZIP_2: Basic region 31.1 87 0.0019 22.9 3.9 23 152-174 30-52 (54)
97 PRK15396 murein lipoprotein; P 31.0 2.3E+02 0.005 22.9 6.6 31 155-185 26-56 (78)
98 PF14817 HAUS5: HAUS augmin-li 30.2 2.6E+02 0.0057 30.9 8.9 61 162-222 359-419 (632)
99 PF11853 DUF3373: Protein of u 30.1 49 0.0011 35.3 3.3 38 151-196 22-59 (489)
100 TIGR02894 DNA_bind_RsfA transc 30.0 2.2E+02 0.0047 26.3 7.0 29 73-102 14-51 (161)
101 PF07106 TBPIP: Tat binding pr 30.0 1.8E+02 0.0038 26.0 6.5 49 151-199 83-133 (169)
102 PRK05431 seryl-tRNA synthetase 29.9 2.1E+02 0.0045 29.8 7.8 51 151-201 39-92 (425)
103 PF07407 Seadorna_VP6: Seadorn 29.8 2.5E+02 0.0054 29.0 8.0 43 154-196 32-76 (420)
104 PF06156 DUF972: Protein of un 29.1 1.5E+02 0.0032 25.3 5.5 30 152-181 20-49 (107)
105 PF07888 CALCOCO1: Calcium bin 28.6 5.8E+02 0.013 27.9 11.0 45 152-196 141-185 (546)
106 PF12709 Kinetocho_Slk19: Cent 28.6 1.8E+02 0.0039 24.2 5.7 27 152-178 47-73 (87)
107 PF12718 Tropomyosin_1: Tropom 28.5 2.5E+02 0.0053 24.9 7.0 43 151-193 32-74 (143)
108 KOG3915 Transcription regulato 28.5 2.9E+02 0.0063 29.8 8.5 18 158-175 525-542 (641)
109 PRK10803 tol-pal system protei 28.4 1.3E+02 0.0029 29.1 5.8 48 151-198 37-84 (263)
110 PHA01819 hypothetical protein 28.3 77 0.0017 27.1 3.6 27 186-215 74-100 (129)
111 KOG4360 Uncharacterized coiled 28.3 2.1E+02 0.0045 31.1 7.4 53 153-205 225-277 (596)
112 PF08606 Prp19: Prp19/Pso4-lik 27.7 2.2E+02 0.0048 22.8 5.8 35 151-185 5-39 (70)
113 PHA01750 hypothetical protein 27.6 2E+02 0.0043 23.0 5.5 31 164-194 38-68 (75)
114 PF07889 DUF1664: Protein of u 27.5 3E+02 0.0064 24.3 7.2 54 152-208 41-94 (126)
115 PF12269 zf-CpG_bind_C: CpG bi 27.5 1.4E+02 0.003 29.1 5.6 27 184-210 38-64 (236)
116 PF04849 HAP1_N: HAP1 N-termin 27.4 5E+02 0.011 26.3 9.7 74 151-224 164-259 (306)
117 PLN02320 seryl-tRNA synthetase 27.2 2.4E+02 0.0053 30.3 7.9 54 113-172 69-125 (502)
118 TIGR00414 serS seryl-tRNA synt 27.0 3E+02 0.0064 28.6 8.4 51 151-201 41-95 (418)
119 PRK13922 rod shape-determining 27.0 1.9E+02 0.004 27.8 6.5 25 154-178 69-93 (276)
120 PF06785 UPF0242: Uncharacteri 26.8 2.6E+02 0.0057 28.8 7.6 8 341-348 343-350 (401)
121 PF10018 Med4: Vitamin-D-recep 26.6 4.3E+02 0.0093 24.2 8.5 52 164-219 12-63 (188)
122 PF03127 GAT: GAT domain; Int 26.3 3.1E+02 0.0067 22.4 6.9 80 153-237 10-89 (100)
123 PF10883 DUF2681: Protein of u 26.2 2.9E+02 0.0064 22.9 6.6 33 154-186 23-55 (87)
124 PF03904 DUF334: Domain of unk 25.8 4.3E+02 0.0093 25.7 8.5 40 154-193 43-82 (230)
125 PF06156 DUF972: Protein of un 25.7 2.9E+02 0.0062 23.5 6.6 18 156-173 10-27 (107)
126 PF06102 DUF947: Domain of unk 25.6 3.5E+02 0.0077 24.6 7.7 12 227-238 150-161 (168)
127 PF10146 zf-C4H2: Zinc finger- 25.6 4.6E+02 0.0099 25.3 8.8 56 154-209 32-87 (230)
128 PF04201 TPD52: Tumour protein 25.2 2.3E+02 0.0049 26.2 6.3 38 153-190 28-65 (162)
129 PRK03947 prefoldin subunit alp 25.2 3.2E+02 0.007 23.4 7.1 47 151-197 91-137 (140)
130 PF11853 DUF3373: Protein of u 25.1 64 0.0014 34.5 3.2 21 155-175 32-52 (489)
131 PRK05892 nucleoside diphosphat 25.1 2.9E+02 0.0062 24.9 7.0 24 151-174 15-38 (158)
132 KOG4497 Uncharacterized conser 25.0 68 0.0015 33.1 3.2 36 38-73 161-200 (447)
133 KOG4552 Vitamin-D-receptor int 25.0 5.1E+02 0.011 25.2 8.7 42 165-206 57-98 (272)
134 KOG0804 Cytoplasmic Zn-finger 24.8 2.7E+02 0.0059 29.7 7.5 46 155-200 348-393 (493)
135 PF04156 IncA: IncA protein; 24.5 5.1E+02 0.011 23.1 9.0 44 152-195 107-150 (191)
136 PLN02678 seryl-tRNA synthetase 24.4 3E+02 0.0065 29.1 7.9 22 151-172 44-65 (448)
137 PF04420 CHD5: CHD5-like prote 24.4 4.2E+02 0.0092 23.7 7.9 36 172-207 70-105 (161)
138 PHA02562 46 endonuclease subun 24.4 4.6E+02 0.0099 27.4 9.3 56 164-219 361-422 (562)
139 PRK06975 bifunctional uroporph 24.4 6E+02 0.013 28.0 10.5 61 152-212 351-415 (656)
140 PF10805 DUF2730: Protein of u 24.2 3.6E+02 0.0077 22.6 6.9 30 169-198 66-95 (106)
141 PF00038 Filament: Intermediat 24.1 6.5E+02 0.014 24.2 11.6 42 152-193 214-255 (312)
142 cd00632 Prefoldin_beta Prefold 22.6 3.7E+02 0.0081 22.1 6.7 44 151-194 60-103 (105)
143 PF06160 EzrA: Septation ring 22.4 3.8E+02 0.0083 28.8 8.4 35 179-213 376-410 (560)
144 PF09304 Cortex-I_coil: Cortex 22.3 5.1E+02 0.011 22.3 8.4 51 151-201 20-70 (107)
145 PF11471 Sugarporin_N: Maltopo 22.2 1.2E+02 0.0025 23.4 3.3 17 181-197 31-47 (60)
146 PF08317 Spc7: Spc7 kinetochor 22.1 5.4E+02 0.012 25.6 8.9 19 156-174 179-197 (325)
147 PRK13169 DNA replication intia 22.0 2.4E+02 0.0051 24.3 5.5 38 152-189 20-57 (110)
148 PF08912 Rho_Binding: Rho Bind 22.0 4.1E+02 0.009 21.2 8.6 23 155-177 4-26 (69)
149 PF09787 Golgin_A5: Golgin sub 21.9 3.5E+02 0.0075 28.7 7.9 39 155-193 275-313 (511)
150 PF04111 APG6: Autophagy prote 21.9 6.3E+02 0.014 25.2 9.3 16 316-331 228-243 (314)
151 KOG1760 Molecular chaperone Pr 21.4 3.5E+02 0.0075 24.1 6.4 39 151-189 78-116 (131)
152 PF02994 Transposase_22: L1 tr 21.4 3.2E+02 0.0069 27.9 7.2 78 151-234 109-190 (370)
153 KOG4010 Coiled-coil protein TP 21.4 2.9E+02 0.0063 26.3 6.2 36 155-190 45-80 (208)
154 smart00338 BRLZ basic region l 21.3 3.6E+02 0.0077 20.2 6.1 22 156-177 28-49 (65)
155 PF08826 DMPK_coil: DMPK coile 21.2 4E+02 0.0086 20.6 7.1 39 152-190 16-54 (61)
156 PF05064 Nsp1_C: Nsp1-like C-t 20.9 2.7E+02 0.0058 23.7 5.6 36 163-205 59-94 (116)
157 KOG0977 Nuclear envelope prote 20.9 5E+02 0.011 28.3 8.8 42 151-192 152-193 (546)
158 PF04012 PspA_IM30: PspA/IM30 20.8 6.6E+02 0.014 23.1 9.0 28 173-200 110-137 (221)
159 PF07798 DUF1640: Protein of u 20.8 6.3E+02 0.014 22.8 8.7 14 90-103 6-19 (177)
160 PF00170 bZIP_1: bZIP transcri 20.6 3.7E+02 0.008 20.1 6.6 16 158-173 30-45 (64)
161 PF04325 DUF465: Protein of un 20.5 1.7E+02 0.0037 21.1 3.7 24 152-175 25-48 (49)
162 PF10376 Mei5: Double-strand r 20.5 7.2E+02 0.016 23.8 9.0 60 152-211 136-196 (221)
163 PF13815 Dzip-like_N: Iguana/D 20.3 2.7E+02 0.0059 23.6 5.5 22 156-177 82-103 (118)
164 PF04051 TRAPP: Transport prot 20.3 1.6E+02 0.0034 25.9 4.3 65 37-102 57-129 (152)
165 PF04849 HAP1_N: HAP1 N-termin 20.2 6E+02 0.013 25.7 8.6 50 158-207 231-280 (306)
166 COG1730 GIM5 Predicted prefold 20.2 5.6E+02 0.012 23.0 7.7 43 151-193 91-133 (145)
167 PRK13729 conjugal transfer pil 20.2 3.2E+02 0.0069 29.3 7.0 43 156-198 78-120 (475)
168 PF01920 Prefoldin_2: Prefoldi 20.2 3.9E+02 0.0085 21.2 6.3 42 151-192 59-100 (106)
169 PRK06342 transcription elongat 20.1 1.9E+02 0.0041 26.2 4.8 19 156-174 36-54 (160)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=7e-47 Score=365.71 Aligned_cols=187 Identities=50% Similarity=0.877 Sum_probs=172.1
Q ss_pred CCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC--CCCceEecC
Q 018107 36 GPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD--PDRWEFANE 113 (360)
Q Consensus 36 ~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~--~d~~eF~h~ 113 (360)
.+++|+.|||.||+||+++++|+|+++|+||||||+..|++.+||+||||+||+|||||||+||||||+ +++|||+|+
T Consensus 11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~ 90 (304)
T KOG0627|consen 11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP 90 (304)
T ss_pred CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CccccchhcccccccccCCCCccc----hhc------ccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 114 GFLRGQRHLLKNIRRRKTTQSSAS----QQA------LDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREY 183 (360)
Q Consensus 114 ~F~Rg~~~LL~~IkRr~~~~~~~~----qq~------~~~~~e~g~~~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~ 183 (360)
+|+||+++||++|+||++.+.... ... ...++...+..+..++.+|+++++.||.|+++||++++.++.+
T Consensus 91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~ 170 (304)
T KOG0627|consen 91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT 170 (304)
T ss_pred hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999854321 111 1123445566899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhH
Q 018107 184 LQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQK 222 (360)
Q Consensus 184 l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~ 222 (360)
++.+.+++..++.+|++|+.|+++++++|.|+.++.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 999999999999999999999999999999999998764
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=4.6e-35 Score=244.46 Aligned_cols=94 Identities=69% Similarity=1.258 Sum_probs=90.7
Q ss_pred CCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccCC----------
Q 018107 36 GPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDP---------- 105 (360)
Q Consensus 36 ~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~---------- 105 (360)
++|+|+.|||+||+|+++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCceEecCCccccchhcccccccc
Q 018107 106 -DRWEFANEGFLRGQRHLLKNIRRR 129 (360)
Q Consensus 106 -d~~eF~h~~F~Rg~~~LL~~IkRr 129 (360)
+.|+|+|++|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 679999999999999999999996
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=4e-35 Score=243.12 Aligned_cols=93 Identities=55% Similarity=1.015 Sum_probs=81.5
Q ss_pred chHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccCCC---------Cce
Q 018107 39 PFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPD---------RWE 109 (360)
Q Consensus 39 ~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~d---------~~e 109 (360)
.||.|||+||+||+++++|+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 49999999999999999999999999999999999999999999999999999999999999999643 399
Q ss_pred EecCCccccchhcccccccccC
Q 018107 110 FANEGFLRGQRHLLKNIRRRKT 131 (360)
Q Consensus 110 F~h~~F~Rg~~~LL~~IkRr~~ 131 (360)
|+|++|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999975
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.97 E-value=6.7e-33 Score=266.87 Aligned_cols=142 Identities=38% Similarity=0.698 Sum_probs=114.4
Q ss_pred CCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC-C---------
Q 018107 36 GPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD-P--------- 105 (360)
Q Consensus 36 ~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~-~--------- 105 (360)
.++.|+.|||.||++|++.++|+|+++|+||||+|++.|.+.|||+||||+||+|||||||+||||||. .
T Consensus 9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~ 88 (282)
T COG5169 9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE 88 (282)
T ss_pred chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence 357899999999999999999999999999999999999999999999999999999999999999996 1
Q ss_pred CCceEecCCccccchhcccccccccCCCCcc--chhccc-------ccccccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 106 DRWEFANEGFLRGQRHLLKNIRRRKTTQSSA--SQQALD-------ACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQ 176 (360)
Q Consensus 106 d~~eF~h~~F~Rg~~~LL~~IkRr~~~~~~~--~qq~~~-------~~~e~g~~~L~~ei~~LKrd~~~L~~Ev~kLRQq 176 (360)
+.|+|.|++|++|..++|++|+|++.+.... ...+.. .+.-.....+..++.+|...++.++..+..|+.-
T Consensus 89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~ 168 (282)
T COG5169 89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEY 168 (282)
T ss_pred hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccch
Confidence 2499999999999999999999977764321 100000 0111112245667788888888888888777654
Q ss_pred H
Q 018107 177 Q 177 (360)
Q Consensus 177 q 177 (360)
+
T Consensus 169 ~ 169 (282)
T COG5169 169 N 169 (282)
T ss_pred h
Confidence 3
No 5
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=97.38 E-value=0.00084 Score=58.15 Aligned_cols=79 Identities=16% Similarity=0.329 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhHHhhHHHHHhhhccccCCCCCC
Q 018107 164 QVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQG 243 (360)
Q Consensus 164 ~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~~~~k~l~~~~~kKRr~~i~~~ 243 (360)
...+.||..+++.++.+...+++|.+++...++.+++|..+-|+++++ |...+.+-+.+++|.+++.++++..+-.+
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~d~~iip~ 78 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQPDKQIIPS 78 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT----------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCCCCCcCCC
Confidence 356789999999999999999999999999999999999999999997 78888888778999999988777666555
Q ss_pred CC
Q 018107 244 PG 245 (360)
Q Consensus 244 ~~ 245 (360)
+.
T Consensus 79 ~~ 80 (121)
T PF03310_consen 79 PE 80 (121)
T ss_dssp --
T ss_pred CC
Confidence 54
No 6
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=95.62 E-value=0.0055 Score=50.05 Aligned_cols=69 Identities=25% Similarity=0.373 Sum_probs=49.5
Q ss_pred HHHHHhccCCCCCCeEEEcC-CCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccCc----cccCCCCceE
Q 018107 42 TKTYDIVEDCNTNHIISWSR-GSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYGF----RKVDPDRWEF 110 (360)
Q Consensus 42 ~KL~~mv~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF 110 (360)
.=|.++|.|+++.++|+|+. .+.-|.|.||+++++.--- +.-..-+|.++-|-|..|.= .||...+..|
T Consensus 6 ~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y 80 (85)
T PF00178_consen 6 QFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY 80 (85)
T ss_dssp HHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred HHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence 33678899999999999999 9999999999999864311 22234578999999887642 3444444444
No 7
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=93.15 E-value=0.08 Score=43.66 Aligned_cols=56 Identities=23% Similarity=0.369 Sum_probs=42.6
Q ss_pred HHHhccCCCCCCeEEEcC-CCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107 44 TYDIVEDCNTNHIISWSR-GSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG 99 (360)
Q Consensus 44 L~~mv~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG 99 (360)
|.++|.||++.++|+|.. ++.-|.+.|+++.++.--. +-=..-||..+-|-|..|-
T Consensus 8 L~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 8 LLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 678999999999999998 6788999999988764322 1112346888888887763
No 8
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=87.92 E-value=0.84 Score=42.23 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=44.1
Q ss_pred CCchHHHHHHhccCCCCCCeEEEcC-CCCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhccc
Q 018107 37 PPPFLTKTYDIVEDCNTNHIISWSR-GSNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTY 98 (360)
Q Consensus 37 ~p~Fl~KL~~mv~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~Y 98 (360)
.-.-..=|.++|.|+++.++|+|.. +|--|.+.||++-++.---+ -=.+=||.-.-|-|..|
T Consensus 68 ~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 68 QIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred hhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 3344445667889999999999998 68789999999988754322 11234666666776655
No 9
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.58 E-value=12 Score=35.64 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQ 210 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~q 210 (360)
.+..++..|+++.+.|...+.++.......+..+..+++++..++...++|..+|.+.+.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777888888888888888888888887776664
No 10
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.55 E-value=5.6 Score=32.35 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVK-------LRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~k-------LRQqqq~~~~~l~~me~RL~~ 193 (360)
|.-||+.||.+|..|..|+.. |+++.+..+.+.+.-++||++
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888888888888888776 444444444455555555544
No 11
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.24 E-value=9.7 Score=30.26 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
|..+++.||.++..|..|...|+++.+..+....+-..||++
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665555555555555444444444444444443
No 12
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.34 E-value=7.4 Score=28.26 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKL 191 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL 191 (360)
++.+.+.||+....|..+..+|.++.+..++++..+..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555555555555544
No 13
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=79.11 E-value=7.8 Score=30.41 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHH
Q 018107 157 DRLRRDKQVLMMELV-------KLRHQQQNTREYLQLMEQKLRRTEM 196 (360)
Q Consensus 157 ~~LKrd~~~L~~Ev~-------kLRQqqq~~~~~l~~me~RL~~~E~ 196 (360)
++|+.+|..|..++. .|.++....+..+.+|-.||..+|+
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 444555554444444 3444555556666677777766664
No 14
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=78.92 E-value=8.8 Score=35.93 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=35.8
Q ss_pred ecCCccccchhcccccccccCCCCccchhcccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 111 ANEGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQK 190 (360)
Q Consensus 111 ~h~~F~Rg~~~LL~~IkRr~~~~~~~~qq~~~~~~e~g~~~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~R 190 (360)
.||.|...+++||..|+=..+. +..+ +| .-..+..||++.+..+.++..|.+.
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~~---------~~av-----SL-------------~erQ~~~LR~~~~~L~~~l~~Li~~ 69 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHPS---------GGAV-----SL-------------VERQLERLRERNRQLEEQLEELIEN 69 (225)
T ss_dssp ---------------------------------HH-----HH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCCC---------CCcc-----cH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998632111 0010 11 1123556677777777788888888
Q ss_pred HHHhHHHHHHHHHHHHHHhcCChH
Q 018107 191 LRRTEMKQQHMMSFLARAMQNPSF 214 (360)
Q Consensus 191 L~~~E~kQqQmm~FLak~~qnp~F 214 (360)
-+..|..++++..+..+++.-.++
T Consensus 70 Ar~Ne~~~~~~~~l~l~LL~a~sl 93 (225)
T PF04340_consen 70 ARENEAIFQRLHRLVLALLAARSL 93 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--SH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 888999999998888888877643
No 15
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.83 E-value=17 Score=38.54 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQL-MEQKLRRTEMKQQHMMSFLA 206 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~-me~RL~~~E~kQqQmm~FLa 206 (360)
.+..++..|.++|+.|..|..+||+..+++..+++. ++.--+.+.+.++|+-.-+.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 567788888899999999999999888777766652 22222233344445443333
No 16
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.92 E-value=15 Score=40.87 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=53.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQN 211 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qn 211 (360)
.+...+..|+..++.-..|+..++++...++..-..+.+|+..+..+|..++.-+.++++.
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888988999999999999999999999999999999999998888877764
No 17
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.66 E-value=22 Score=28.56 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTR 181 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~ 181 (360)
|.-+|+.||..|+.|.+|+..+++...+..
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 556888888888888888887766554443
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.02 E-value=15 Score=29.16 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLRHQ 176 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQq 176 (360)
|.++=.....|..|+..|+.+
T Consensus 13 i~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444443
No 19
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.34 E-value=27 Score=31.21 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=47.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAM 209 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~ 209 (360)
.|..++..+-.....|-.|+..+|.+..+....++.|.+|+...|..+.-+.+.|..+=
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46677777777788888888888888888888999999999998888877766665443
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.04 E-value=27 Score=38.70 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=12.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQ 176 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQq 176 (360)
.|+.+|.+||.|.+...+-=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 35555555555554444433334433
No 21
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.79 E-value=62 Score=32.29 Aligned_cols=51 Identities=20% Similarity=0.443 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
.+..+++.|+.+...|.+|+..|.++......++..++..+..++....+.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~ 97 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEY 97 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999888889988888887776555443
No 22
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.12 E-value=12 Score=27.12 Aligned_cols=33 Identities=33% Similarity=0.374 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYL 184 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l 184 (360)
|...++.|+.++..|..|...|+.+.+.....+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556667777777777777777777666555444
No 23
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.33 E-value=35 Score=31.34 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARA 208 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~ 208 (360)
...++.+++.|..|+..|+++....+.++..++.++..++..=+.|+..+-+|
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888888888777777777777777777776666666555544
No 24
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.00 E-value=39 Score=29.38 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQ---QNTREYLQLMEQKLRRTEMKQQHMMS 203 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqq---q~~~~~l~~me~RL~~~E~kQqQmm~ 203 (360)
.+..++.+|...+..+..||++|-.+. .....++..++..+..++.|-+-++-
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777788888776655 33345566666666666666554433
No 25
>PF14282 FlxA: FlxA-like protein
Probab=60.80 E-value=55 Score=27.53 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
+.+..|..|++....|..+|..|..
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3588999999999999999988876
No 26
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=60.40 E-value=88 Score=34.48 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFL 205 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FL 205 (360)
+..+|++|+.+...|-.+|..+..+.......++.|-+.+....+||-=+-+|=
T Consensus 84 L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~ 137 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYS 137 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444443333333
No 27
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=60.28 E-value=1.3e+02 Score=28.62 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChH-
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTR------------------EYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSF- 214 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~------------------~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~F- 214 (360)
.+...|...+..|-+|+..||++||.+. ..++.|+..-+.-++.||++---.+..+=+.+|
T Consensus 38 ~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~LwdeSi~ 117 (228)
T PRK06800 38 KDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELLWDQSFQ 117 (228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444433 245566666666777788876666665555443
Q ss_pred -HHHHHHhHHhhHHH
Q 018107 215 -VQQLAQQKDRRKEF 228 (360)
Q Consensus 215 -l~qLvqq~~~~k~l 228 (360)
..++|+|.-..+.|
T Consensus 118 LAEkIV~QaiDtR~l 132 (228)
T PRK06800 118 LAEKIVNQAVDTRLL 132 (228)
T ss_pred HHHHHHHHhhhHHHH
Confidence 34555554333333
No 28
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.19 E-value=39 Score=36.77 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=49.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCC
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNP 212 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp 212 (360)
.+...+..|++.++.=.+++..++++...++..-..+++|+..+--+|.-+|.-+-++++.|
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 45556677777777778888888888888888888888888888888888888888877765
No 29
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.06 E-value=46 Score=32.60 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLR-----RTEMKQQHMMSF 204 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~-----~~E~kQqQmm~F 204 (360)
.|+.+|..|-.+++.|..|-..||.+......+-+.+-.+|. -+|.+|+|++.-
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~ 152 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNT 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 477888888889999999999888876665555544444443 345566665443
No 30
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.52 E-value=1e+02 Score=29.31 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLA 206 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLa 206 (360)
+..+-..|..+...|..|+..|+.+......++...++++..++.+..++-.-..
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666666666666666666665544443
No 31
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.76 E-value=83 Score=28.09 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQ 178 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq 178 (360)
|+.++..|+.+...|..++..|+.+..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444444443
No 32
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.46 E-value=97 Score=24.54 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSF 204 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~F 204 (360)
.|-+.|.+....+..-|-+||.+.......+..+..++...+..-..+-.+
T Consensus 19 eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 19 EEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555555544444333
No 33
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=53.83 E-value=1e+02 Score=23.91 Aligned_cols=56 Identities=7% Similarity=0.194 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLAR 207 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak 207 (360)
+..++.+++.+...+...+..+.+........+..+.++|..++.-+.=+..++..
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777888888888888777666555554
No 34
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=53.46 E-value=86 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 162 DKQVLMMELVKLRHQQQNTREYLQLMEQ 189 (360)
Q Consensus 162 d~~~L~~Ev~kLRQqqq~~~~~l~~me~ 189 (360)
|...+...+.+|||++.....-+++|++
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445667899999999998888888876
No 35
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.40 E-value=84 Score=24.07 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
|..+|..|......|..+|..+|...+..+.+-..-.+||..
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555555544
No 36
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=51.33 E-value=48 Score=27.16 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRT 194 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~ 194 (360)
++-..+..|.+++..|++++..+.+...=...+|+.+.+|++.+
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567889999999999999999887766666777777666543
No 37
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=51.11 E-value=1.2e+02 Score=23.84 Aligned_cols=57 Identities=25% Similarity=0.205 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLAR 207 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak 207 (360)
.|+..|++|=.-.+.|..|-..||+++.....+=..+.++...+-.|-..|++=|..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 367888999999999999999999999988888888888888888888888766653
No 38
>smart00338 BRLZ basic region leucin zipper.
Probab=50.90 E-value=41 Score=25.40 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTRE 182 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~ 182 (360)
.|+.++..|..++..|..++..|+++...+..
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777666654433
No 39
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=50.60 E-value=53 Score=29.27 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 157 DRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQ 189 (360)
Q Consensus 157 ~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~ 189 (360)
..|..++..|++||.+|+++......++.+.+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888776544444444333
No 40
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.53 E-value=1.2e+02 Score=23.56 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQH 200 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQ 200 (360)
|+.|| +-++.|..|+.+.+-...++...|+..+.|.+.++..-..
T Consensus 6 L~~Ei----rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~ 50 (61)
T PF08826_consen 6 LEAEI----RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIER 50 (61)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 3467788888888877777777776666666665554433
No 41
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=50.13 E-value=93 Score=29.18 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARA 208 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~ 208 (360)
+++..|++|......++..+-....+--.....+..|++||+.++.|-.+|+..|.+-
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~ 140 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQ 140 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5777888774444444333332222334677889999999999999999998888743
No 42
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=49.88 E-value=13 Score=24.79 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=17.1
Q ss_pred HhccCCCCCCeEEEcCCCCeEEEe
Q 018107 46 DIVEDCNTNHIISWSRGSNSFVVW 69 (360)
Q Consensus 46 ~mv~dp~~~~iIsWs~~G~sFiI~ 69 (360)
.+++.+..+....|+|||+.++..
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEE
Confidence 356677777889999999987764
No 43
>PRK10963 hypothetical protein; Provisional
Probab=48.50 E-value=79 Score=29.82 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=47.7
Q ss_pred ecCCccccchhcccccccccCCCCccchhcccccccccccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 111 ANEGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEVGRFGL-DGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQ 189 (360)
Q Consensus 111 ~h~~F~Rg~~~LL~~IkRr~~~~~~~~qq~~~~~~e~g~~~L-~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~ 189 (360)
.||.|.-.+++||..|+=.-+.. + . .+| +-+ +..||++.+..+.++..|.+
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~~--------g-a-----VSL~ErQ--------------~~~LR~r~~~Le~~l~~Li~ 65 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPVR--------G-T-----VSLVEWQ--------------MARQRNHIHVLEEEMTLLME 65 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCCC--------C-e-----ecHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999775321110 1 1 111 112 44556666666666677777
Q ss_pred HHHHhHHHHHHHHHHHHHHhcCChH
Q 018107 190 KLRRTEMKQQHMMSFLARAMQNPSF 214 (360)
Q Consensus 190 RL~~~E~kQqQmm~FLak~~qnp~F 214 (360)
.-+..+.-.+++.....+++.-.+|
T Consensus 66 ~A~~Ne~l~~~~~~l~l~Ll~a~~~ 90 (223)
T PRK10963 66 QAIANEDLFYRLLPLQSRLAAADSL 90 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 7777777777777766666666544
No 44
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=48.31 E-value=54 Score=32.21 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQN 179 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~ 179 (360)
..+.+|+.+|+.|..|+..|+++++.
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888888877655543
No 45
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=47.85 E-value=1.9e+02 Score=25.14 Aligned_cols=64 Identities=27% Similarity=0.272 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQK 222 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~ 222 (360)
.+...|.+.+-.+..++..+|.+.+.....++.++.+....+++++.+..-. +|.++...++..
T Consensus 41 ~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~-----s~~~l~~~L~~~ 104 (150)
T PF07200_consen 41 AENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY-----SPDALLARLQAA 104 (150)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHH
Confidence 3444555555555566777777777777788888888888887777764332 255665555543
No 46
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.84 E-value=1.3e+02 Score=24.27 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
+..|.+-=.-...|..||..|+.+........+...+...+.++..+|+
T Consensus 10 E~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333344566777777777766655555555555555555544443
No 47
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=47.26 E-value=1.6e+02 Score=26.32 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
.+..++..++.++..|.+++.+.+.+..............|+..|+...||
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~ 120 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555554444
No 48
>PRK09039 hypothetical protein; Validated
Probab=46.88 E-value=1.1e+02 Score=30.92 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMK 197 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~k 197 (360)
..++..+|........+|..|++|....+.++.+++..|...|.+
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444444445555555555555555555555554444
No 49
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.69 E-value=1.7e+02 Score=26.87 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 170 LVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 170 v~kLRQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
+..++.++.....++..++++++.++.....+
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666667777777777777776665
No 50
>PRK09039 hypothetical protein; Validated
Probab=46.52 E-value=1.1e+02 Score=30.94 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAM 209 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~ 209 (360)
...++.....+...|.+||..||.|...++..|...+++.+..+.+...+-.-|-.++
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777788888888888888888888888888888776666666555555544
No 51
>PRK14127 cell division protein GpsB; Provisional
Probab=46.34 E-value=52 Score=28.29 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTE 195 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E 195 (360)
.=++.+-.|.+.|..|+..|+.+....+.++..++.|+...+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345677778888888888888888777777777777776543
No 52
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=46.02 E-value=60 Score=24.45 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNT 180 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~ 180 (360)
|+.++..|..++..|..++..|+++.+..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655433
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=45.68 E-value=80 Score=30.69 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQ 198 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQ 198 (360)
+..+++.++++...+..|+..++.+.......++.+.+|+...+.++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777777666655
No 54
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.61 E-value=87 Score=23.91 Aligned_cols=31 Identities=6% Similarity=0.236 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 161 RDKQVLMMELVKLRHQQQNTREYLQLMEQKL 191 (360)
Q Consensus 161 rd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL 191 (360)
.+...+-..+..+|.+.+.++..+..+++.+
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555544
No 55
>PRK11637 AmiB activator; Provisional
Probab=43.75 E-value=1.4e+02 Score=30.68 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 162 DKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 162 d~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
....+..+|..+.+++..++.++..++.+|..
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 56
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.56 E-value=2.2e+02 Score=24.79 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=6.9
Q ss_pred hhhcccCcccc
Q 018107 93 RQLNTYGFRKV 103 (360)
Q Consensus 93 RQLN~YGFrKv 103 (360)
.+|-.+||-..
T Consensus 9 ~~L~s~G~~~~ 19 (151)
T PF11559_consen 9 QQLLSRGYPSD 19 (151)
T ss_pred HHHHHCCCCCC
Confidence 45666777654
No 57
>PRK00295 hypothetical protein; Provisional
Probab=43.10 E-value=1.3e+02 Score=23.53 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 164 QVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 164 ~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
+.|-..|.+..++....+.+++.|.+||+.
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443444444444444433
No 58
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.06 E-value=81 Score=26.60 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQ 185 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~ 185 (360)
.+..++++.+.+..|+.+++++....+.++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444444443
No 59
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.99 E-value=84 Score=24.39 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRT 194 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~ 194 (360)
+..+.-+..-.+.|-..|....++....+.+++.|.+||+.+
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444555555555555545555555555555443
No 60
>PRK00846 hypothetical protein; Provisional
Probab=42.58 E-value=1.1e+02 Score=24.70 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 018107 182 EYLQLMEQKL 191 (360)
Q Consensus 182 ~~l~~me~RL 191 (360)
.+++.|.+||
T Consensus 48 ~ql~~L~~rL 57 (77)
T PRK00846 48 ELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.57 E-value=78 Score=29.89 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=17.5
Q ss_pred cCccccC--CCCceEecCCccccchhccccc
Q 018107 98 YGFRKVD--PDRWEFANEGFLRGQRHLLKNI 126 (360)
Q Consensus 98 YGFrKv~--~d~~eF~h~~F~Rg~~~LL~~I 126 (360)
.||.+|. .++--|.|..|....|.+-..+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 3677774 3455677777776666543333
No 62
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.49 E-value=71 Score=26.10 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018107 162 DKQVLMMELVKLRHQQQN 179 (360)
Q Consensus 162 d~~~L~~Ev~kLRQqqq~ 179 (360)
....|.+||..|+.+...
T Consensus 19 tI~LLqmEieELKekn~~ 36 (79)
T PRK15422 19 TITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555444333
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.46 E-value=1.6e+02 Score=29.34 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQH 200 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQ 200 (360)
++..+|.+...+..+|...|+.....+.+++.+..++.....+-++
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444443333
No 64
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.81 E-value=1.7e+02 Score=29.27 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFL 205 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FL 205 (360)
.++.++|.+...+..|+...++++...+.+++.+..+|.....+.+++..=+
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555556666666666666666666666666665555544443333
No 65
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=41.29 E-value=1.6e+02 Score=24.21 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRH----------QQQNTREYLQLMEQKLRRTEMK 197 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQ----------qqq~~~~~l~~me~RL~~~E~k 197 (360)
.+..+++.|+.++..+-.+|..+.. +-..+..++..++..+..++.+
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888877776654 3334444444444444444443
No 66
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.87 E-value=89 Score=24.74 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018107 166 LMMELVKLRHQQQNTREYLQLMEQKLRRTEMK 197 (360)
Q Consensus 166 L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~k 197 (360)
|+.|-.+|..+.......+..+...+...|..
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ 48 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 67
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.55 E-value=2.2e+02 Score=25.60 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAM 209 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~ 209 (360)
.+..+++.+.+....+..++..++...+.....++..+++++..+.....+..=+..+.
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888777777777777777777777777777666555544
No 68
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=40.31 E-value=77 Score=26.58 Aligned_cols=55 Identities=11% Similarity=0.277 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhcCChHHHHHHHhHH
Q 018107 169 ELVKLRHQQQNTREYLQLMEQKLRRTE-MKQQHMMSFLARAMQNPSFVQQLAQQKD 223 (360)
Q Consensus 169 Ev~kLRQqqq~~~~~l~~me~RL~~~E-~kQqQmm~FLak~~qnp~Fl~qLvqq~~ 223 (360)
|+.++.+-......+|+.+.+++...- .....|+..-..++.||.|+..+...-.
T Consensus 36 E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 36 EIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 444444444444445555555543321 2233788999999999999887766544
No 69
>PRK00736 hypothetical protein; Provisional
Probab=40.03 E-value=1.4e+02 Score=23.36 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 164 QVLMMELVKLRHQQQNTREYLQLMEQKL 191 (360)
Q Consensus 164 ~~L~~Ev~kLRQqqq~~~~~l~~me~RL 191 (360)
+.|...|++..++......+++.|.+|+
T Consensus 22 e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 22 EELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344433333333333333333333
No 70
>PRK11637 AmiB activator; Provisional
Probab=39.74 E-value=1.7e+02 Score=30.01 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018107 158 RLRRDKQVLMMELVKL 173 (360)
Q Consensus 158 ~LKrd~~~L~~Ev~kL 173 (360)
.+..+...+..++..+
T Consensus 93 ~~~~~i~~~~~ei~~l 108 (428)
T PRK11637 93 ETQNTLNQLNKQIDEL 108 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 71
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=39.38 E-value=2.1e+02 Score=23.31 Aligned_cols=47 Identities=13% Similarity=0.397 Sum_probs=25.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 155 EVDRLRRD-KQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 155 ei~~LKrd-~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
+++.+.++ ++.|.+|+..|+.....+-..+...++....++...+-+
T Consensus 9 d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~L 56 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYL 56 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 666777777776665555555555555444444444333
No 72
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.91 E-value=2.4e+02 Score=27.96 Aligned_cols=10 Identities=50% Similarity=0.557 Sum_probs=3.8
Q ss_pred HHHHHHHHhc
Q 018107 201 MMSFLARAMQ 210 (360)
Q Consensus 201 mm~FLak~~q 210 (360)
++.-=+|+|+
T Consensus 102 ~l~~raRAmq 111 (265)
T COG3883 102 LLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 73
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.72 E-value=3e+02 Score=30.52 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMK 197 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~k 197 (360)
.+...+++|+.++..|..++..++......+.++..+..+++.-..+
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~ 472 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRK 472 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788888888888888888888888888888887777644333
No 74
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.86 E-value=2.7e+02 Score=30.37 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHh--cCChHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQ-------QNTREYLQLMEQKLRRTEMK----QQHMMSFLARAM--QNPSFVQ 216 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqq-------q~~~~~l~~me~RL~~~E~k----QqQmm~FLak~~--qnp~Fl~ 216 (360)
.++.++..||+++.-|+.+|.++|.+. ...++.++.|.++|..+... ..+...+..+-. .++.|+.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~ 244 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFK 244 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHH
Confidence 467788888888888888888887643 23456777788888777633 333444555544 4455544
No 75
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=37.63 E-value=58 Score=35.64 Aligned_cols=59 Identities=27% Similarity=0.456 Sum_probs=35.7
Q ss_pred CCccccchhcccccccccCCCCccchhcccccccc--c-ccCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 113 EGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEV--G-RFGLDGEVDRLRRDKQVLMMELVKLRHQ 176 (360)
Q Consensus 113 ~~F~Rg~~~LL~~IkRr~~~~~~~~qq~~~~~~e~--g-~~~L~~ei~~LKrd~~~L~~Ev~kLRQq 176 (360)
..|..-+..|+..|+||...+.+.+ .|-.. - -..|+.+++.|+++++.|.+|=..+...
T Consensus 479 ~~lte~QLslIrDIRRRgKNkvAAQ-----nCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~ 540 (604)
T KOG3863|consen 479 YKLTEEQLSLIRDIRRRGKNKVAAQ-----NCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDST 540 (604)
T ss_pred cccCHHHHHHhhccccccccchhcc-----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566668889999999855433211 12100 0 0157788888888888777776655443
No 76
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=37.60 E-value=1.9e+02 Score=27.33 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
-.||..||..|+-|..|-..||.
T Consensus 54 l~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 54 LNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888765
No 77
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.54 E-value=2.4e+02 Score=27.28 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 169 ELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 169 Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
.|..|+++...++-+++.+...|+.+.++|..+
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444443
No 78
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.48 E-value=2.8e+02 Score=24.17 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
..+.++..|+..|...+.+|+.+....+..+...+.+.+.
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~ 98 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ 98 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333333333333333333
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.23 E-value=1.1e+02 Score=29.72 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMK 197 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~k 197 (360)
.|..+++.+++....|..|++.+...+.....++..+..++..+|..
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777777777666666666554
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=36.76 E-value=1.6e+02 Score=32.75 Aligned_cols=53 Identities=30% Similarity=0.425 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHhcC
Q 018107 158 RLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTE-------MKQQHMMSFLARAMQN 211 (360)
Q Consensus 158 ~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E-------~kQqQmm~FLak~~qn 211 (360)
.+|...+.|-.|+.+||.+.+..+.++..||..++.+. ...+-+|+-|+ +||+
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~-amqd 601 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALS-AMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHH
Confidence 46666677788888888888888888888887664322 22444556555 3443
No 81
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=35.92 E-value=2.1e+02 Score=25.36 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018107 165 VLMMELVKLRHQQQNTREYLQL 186 (360)
Q Consensus 165 ~L~~Ev~kLRQqqq~~~~~l~~ 186 (360)
.|..|+.+.....+....+++.
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~ 66 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQE 66 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333333333333
No 82
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.35 E-value=2e+02 Score=26.65 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQ 177 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqq 177 (360)
+..++..|+.++..|..++..++.+.
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~ 150 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKC 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444
No 83
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=35.09 E-value=88 Score=32.09 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=21.0
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 149 RFGLDGEVDRLRRDKQVLMMELVKLRHQ 176 (360)
Q Consensus 149 ~~~L~~ei~~LKrd~~~L~~Ev~kLRQq 176 (360)
.++|..|-++||++++.|..||.+|..+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888887444
No 84
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.91 E-value=21 Score=32.78 Aligned_cols=37 Identities=27% Similarity=0.561 Sum_probs=7.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
|+.|| .+++.|..|+++||.+....+.++ .+.+|++.
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHH----HHHHHHHHCH-----------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 44555 345555555555555555555555 45555543
No 85
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=34.35 E-value=2.5e+02 Score=22.71 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNT-------REYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~-------~~~l~~me~RL~~~E~kQqQm 201 (360)
.=++.+|.+...+.+|+..++.+.... -..|+.+.+.|-.+|..+.+|
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777666644333 344445555555555555444
No 86
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.22 E-value=1.3e+02 Score=27.71 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQ 198 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQ 198 (360)
+..+++.|.+..+.+-.+|+.. |.-..+.+|..|-.+|+.+|++-
T Consensus 97 l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~ 141 (175)
T PRK13182 97 ITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARL 141 (175)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433 12223455556666666666443
No 87
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.15 E-value=1.3e+02 Score=28.87 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=50.0
Q ss_pred ceEecCCccccchhcccccccccCCCCccchhcccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 108 WEFANEGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLM 187 (360)
Q Consensus 108 ~eF~h~~F~Rg~~~LL~~IkRr~~~~~~~~qq~~~~~~e~g~~~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~m 187 (360)
|-..||.|.+-+++|+..|.=..+.... -+.+ +- .+.++|+++...+..+.++
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~t------VSLv-------e~--------------ql~r~R~~~~~Le~~l~~L 64 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGT------VSLV-------ER--------------QLARLRNRIRELEEELAAL 64 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCe------eehH-------HH--------------HHHHHHHHHHHHHHHHHHH
Confidence 4458999999999999998755433211 0111 11 2455566666666667777
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhcCC
Q 018107 188 EQKLRRTEMKQQHMMSFLARAMQNP 212 (360)
Q Consensus 188 e~RL~~~E~kQqQmm~FLak~~qnp 212 (360)
++.-+..+.-+.+++..-..+++-.
T Consensus 65 ~~~A~~N~~lf~r~~~lq~~Ll~a~ 89 (218)
T COG3159 65 MENARANERLFYRLHALQLDLLDAR 89 (218)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 7777777777777777766666543
No 88
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.40 E-value=2.4e+02 Score=30.24 Aligned_cols=43 Identities=2% Similarity=0.040 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018107 163 KQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFL 205 (360)
Q Consensus 163 ~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FL 205 (360)
...|.++|..||++.+.+..+.+.++++|+.+|...++|-.=+
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456666777776666666667777777777776666654443
No 89
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.38 E-value=1.3e+02 Score=22.74 Aligned_cols=10 Identities=20% Similarity=0.886 Sum_probs=6.0
Q ss_pred cCChHHHHHH
Q 018107 210 QNPSFVQQLA 219 (360)
Q Consensus 210 qnp~Fl~qLv 219 (360)
.+|.++..++
T Consensus 52 ~~~~~ie~~A 61 (80)
T PF04977_consen 52 NDPDYIEKVA 61 (80)
T ss_pred CCHHHHHHHH
Confidence 4666665554
No 90
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.10 E-value=2.6e+02 Score=29.51 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
|..+|.+++.+...+..++....-..+.....+..++.+|..
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 333344444444433333333333333333333333333333
No 91
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.97 E-value=2.2e+02 Score=21.53 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLRHQQQNTREYLQ 185 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~ 185 (360)
+.+++.+.+.|..++..++++....+.+++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555444444333333
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.79 E-value=2.3e+02 Score=25.13 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
.+..|..++..+-.||..|.+..+.+..++..++.+|..
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444443333
No 93
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.75 E-value=1.8e+02 Score=31.61 Aligned_cols=9 Identities=44% Similarity=0.707 Sum_probs=5.4
Q ss_pred chhhhhccC
Q 018107 73 AFSITLLPK 81 (360)
Q Consensus 73 ~F~~~vLP~ 81 (360)
.|....||+
T Consensus 76 ~F~ayyLPk 84 (546)
T PF07888_consen 76 QFQAYYLPK 84 (546)
T ss_pred EECcccCCC
Confidence 466666665
No 94
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.65 E-value=1.7e+02 Score=25.66 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLR 192 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~ 192 (360)
+.+.-++.|+...+.|-..|.+|+.+....+.++..|...|+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777778888888888887777666666665555444
No 95
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.33 E-value=2.8e+02 Score=23.30 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 160 RRDKQVLMMELVKL--RHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 160 Krd~~~L~~Ev~kL--RQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
.+-.+.+-.++..| ++....++..|..|..+++.++.+-+.|
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444555555 4444455555555555555555444443
No 96
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=31.05 E-value=87 Score=22.91 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLR 174 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLR 174 (360)
+..++..|..++..|..+|..|+
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555554
No 97
>PRK15396 murein lipoprotein; Provisional
Probab=31.01 E-value=2.3e+02 Score=22.95 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQ 185 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~ 185 (360)
++++|..+.+.|..++..+.+..+..+..++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~ 56 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ 56 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444444443
No 98
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=30.19 E-value=2.6e+02 Score=30.92 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhH
Q 018107 162 DKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQK 222 (360)
Q Consensus 162 d~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~ 222 (360)
+.-.|+..+..|+.+.+........=.+.++..+.|+|.|+.|=..+-+.-.-|..|+.+|
T Consensus 359 e~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~N 419 (632)
T PF14817_consen 359 EVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGN 419 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444455555555555555555555556677788888888888887777777777777654
No 99
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=30.05 E-value=49 Score=35.30 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~ 196 (360)
.+.++++.++ +.+.|.+||..|++|+. .|.+|+..+|+
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 4556666666 66677777777766654 55566655554
No 100
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.98 E-value=2.2e+02 Score=26.28 Aligned_cols=29 Identities=34% Similarity=0.576 Sum_probs=14.3
Q ss_pred chhhhhccCccCC--CChhhHH---hhhcc----cCccc
Q 018107 73 AFSITLLPKYFKH--NNFSSFV---RQLNT----YGFRK 102 (360)
Q Consensus 73 ~F~~~vLP~yFkh--~nfsSFv---RQLN~----YGFrK 102 (360)
.++..|| +|.+. +-.+.|= ++||. .|||-
T Consensus 14 LLAEtVL-rhIReG~TQL~AFeEvg~~L~RTsAACGFRW 51 (161)
T TIGR02894 14 LLAETVL-RHIREGSTQLSAFEEVGRALNRTAAACGFRW 51 (161)
T ss_pred HHHHHHH-HHHhcchHHHHHHHHHHHHHcccHHHhcchH
Confidence 3455554 33332 2244444 67776 67764
No 101
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.97 E-value=1.8e+02 Score=26.00 Aligned_cols=49 Identities=24% Similarity=0.395 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQ--QNTREYLQLMEQKLRRTEMKQQ 199 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqq--q~~~~~l~~me~RL~~~E~kQq 199 (360)
.|..++..|+.+...|..|+..|+... ..+...+..++..+..++.+..
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666655433 1223333344444444443333
No 102
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.93 E-value=2.1e+02 Score=29.78 Aligned_cols=51 Identities=12% Similarity=0.292 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQ---QQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQq---qq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
.+..+++.|+.+++.+-+++..+... .+....+...+.+++..+|.+...+
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777653322 1234444455555555555554444
No 103
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.83 E-value=2.5e+02 Score=28.96 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQL--MEQKLRRTEM 196 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~--me~RL~~~E~ 196 (360)
.|.-.|+.+|..|.+|...||.+...+++.+.. +.+|.+.++-
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv 76 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDV 76 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 467789999999999999999998888877764 6666666544
No 104
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.05 E-value=1.5e+02 Score=25.25 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTR 181 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~ 181 (360)
+-.+|..||.....|..|-++||-+.+..+
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443333
No 105
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.62 E-value=5.8e+02 Score=27.88 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~ 196 (360)
+..+++...+++..|.++...|.++...++.++..|+..|...+.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e 185 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE 185 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554444444444444444443333
No 106
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.60 E-value=1.8e+02 Score=24.20 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQ 178 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq 178 (360)
.+..|+.|..++..|..|+..|+.+..
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665543
No 107
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.52 E-value=2.5e+02 Score=24.91 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
.++.+|..|.+.++.|-.+|-++..+.......+...+.+...
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~ 74 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN 74 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3456666666666666666666666555555555444444433
No 108
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=28.48 E-value=2.9e+02 Score=29.76 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018107 158 RLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 158 ~LKrd~~~L~~Ev~kLRQ 175 (360)
+++.++..||+|+.+.|.
T Consensus 525 Qiq~Ek~ELkmd~lrere 542 (641)
T KOG3915|consen 525 QIQLEKTELKMDFLRERE 542 (641)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555443
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.43 E-value=1.3e+02 Score=29.09 Aligned_cols=48 Identities=13% Similarity=0.255 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQ 198 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQ 198 (360)
+.+..+.+|.+..+.--+-+..|.+|...++.++..|...++....+.
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l 84 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQL 84 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456666666554444444444555555555555555555444444333
No 110
>PHA01819 hypothetical protein
Probab=28.31 E-value=77 Score=27.05 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCChHH
Q 018107 186 LMEQKLRRTEMKQQHMMSFLARAMQNPSFV 215 (360)
Q Consensus 186 ~me~RL~~~E~kQqQmm~FLak~~qnp~Fl 215 (360)
.+++|+..+| |||..||..-|+-|+-+
T Consensus 74 vleqri~sle---qq~ttflssq~qqpqqv 100 (129)
T PHA01819 74 VLEQRIASLE---QQVTTFLSSQMQQPQQV 100 (129)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhCchhh
Confidence 4566776666 48999999999888543
No 111
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=28.30 E-value=2.1e+02 Score=31.11 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFL 205 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FL 205 (360)
..++.++..++..|+.+|+.++++...+..+...|-+.|+.+-+.|.||.+=+
T Consensus 225 t~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~ 277 (596)
T KOG4360|consen 225 TKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34556666677788888888888888888888888888888887777764433
No 112
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=27.66 E-value=2.2e+02 Score=22.79 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQ 185 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~ 185 (360)
++.+=+..|+.+-.+++.|.-.||++...++.+|.
T Consensus 5 SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs 39 (70)
T PF08606_consen 5 SIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELS 39 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999877666654
No 113
>PHA01750 hypothetical protein
Probab=27.59 E-value=2e+02 Score=22.98 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018107 164 QVLMMELVKLRHQQQNTREYLQLMEQKLRRT 194 (360)
Q Consensus 164 ~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~ 194 (360)
+...+|+..|+.+.+.+......+++++..+
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455566666666665555555554444433
No 114
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.55 E-value=3e+02 Score=24.25 Aligned_cols=54 Identities=7% Similarity=0.170 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARA 208 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~ 208 (360)
|..-+..+-+..+.++..|..-|.+. ..+|+.+..+|..+..-+++|..=+..+
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhL---sqRId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHL---SQRIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444332 2344444444444444444444433333
No 115
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=27.48 E-value=1.4e+02 Score=29.06 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 018107 184 LQLMEQKLRRTEMKQQHMMSFLARAMQ 210 (360)
Q Consensus 184 l~~me~RL~~~E~kQqQmm~FLak~~q 210 (360)
...+..+|+.++.+++.|..|++++-+
T Consensus 38 q~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 38 QQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777778888888888887544
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.36 E-value=5e+02 Score=26.26 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH----------HHHHH----HHHHHHHhHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLR--------HQQQNTR----------EYLQL----MEQKLRRTEMKQQHMMSFLARA 208 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLR--------Qqqq~~~----------~~l~~----me~RL~~~E~kQqQmm~FLak~ 208 (360)
.|...+..|..+|..|..|..+|+ ++++-+. .+|.. +..+.......|.+|...++++
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677777777777665 1222222 22222 2335556666777888888887
Q ss_pred hcCChHHHHHHHhHHh
Q 018107 209 MQNPSFVQQLAQQKDR 224 (360)
Q Consensus 209 ~qnp~Fl~qLvqq~~~ 224 (360)
+.-..-++++...++.
T Consensus 244 vdlQ~r~k~~~~EnEe 259 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEE 259 (306)
T ss_pred HHHHHHHHHHhhhHHH
Confidence 7655555666655553
No 117
>PLN02320 seryl-tRNA synthetase
Probab=27.17 E-value=2.4e+02 Score=30.29 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=27.2
Q ss_pred CCccccchhc-ccccccccCCCCccchhccccccc--ccccCcHHHHHHHHHHHHHHHHHHHH
Q 018107 113 EGFLRGQRHL-LKNIRRRKTTQSSASQQALDACVE--VGRFGLDGEVDRLRRDKQVLMMELVK 172 (360)
Q Consensus 113 ~~F~Rg~~~L-L~~IkRr~~~~~~~~qq~~~~~~e--~g~~~L~~ei~~LKrd~~~L~~Ev~k 172 (360)
-.|.|.+++. ..+|++|... . . .+..++ ...-.+..+++.|+.+++.+-+++..
T Consensus 69 ~k~ir~n~~~v~~~l~~R~~~-~--~---vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 69 FKWIRDNKEAVAINIRNRNSN-A--N---LELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHhCHHHHHHHHHhcCCC-c--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777765 4556666421 1 0 111111 11113556677777777777766643
No 118
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.04 E-value=3e+02 Score=28.57 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQ----QQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQq----qq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
.+..+++.|+.+++.+-++|..+.+. .+....++..+.+++...|.+...+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 95 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777776554322 2233344445555555555444443
No 119
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.98 E-value=1.9e+02 Score=27.80 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQ 178 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq 178 (360)
..+.+++.+|+.|.+|+..|+.+..
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777766653
No 120
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.77 E-value=2.6e+02 Score=28.84 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=4.8
Q ss_pred CchhHHHH
Q 018107 341 GDENVRLL 348 (360)
Q Consensus 341 ~~~~~~~l 348 (360)
|..|+..+
T Consensus 343 W~~dL~~~ 350 (401)
T PF06785_consen 343 WETDLQLL 350 (401)
T ss_pred HHHHHHhh
Confidence 66666644
No 121
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.57 E-value=4.3e+02 Score=24.17 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHH
Q 018107 164 QVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLA 219 (360)
Q Consensus 164 ~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLv 219 (360)
..|..-|..| ++|+....+|+.+...+...+.+...++.-|..+-+ -|..++
T Consensus 12 ~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~---~L~~~~ 63 (188)
T PF10018_consen 12 DELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARK---ELRTLP 63 (188)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3344444444 445556777777777777777766666666655443 444444
No 122
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=26.31 E-value=3.1e+02 Score=22.37 Aligned_cols=80 Identities=11% Similarity=0.292 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhHHhhHHHHHhh
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMI 232 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~~~~k~l~~~~ 232 (360)
..+++..+. +-.|+.|+...-............+.+-....+.-|.+|+.++..+ .+..++..|++-++. |..++
T Consensus 10 ~~~l~~v~~-~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~-~dee~l~~lL~~ND~---L~~~l 84 (100)
T PF03127_consen 10 RSELEKVKN-NAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEV-EDEELLGELLQANDE---LNQAL 84 (100)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH---HHHHH
Confidence 345555544 5566677665544444444443344444444445556666666654 445599999998874 44444
Q ss_pred hcccc
Q 018107 233 NRKRR 237 (360)
Q Consensus 233 ~kKRr 237 (360)
.+-.+
T Consensus 85 ~~Y~~ 89 (100)
T PF03127_consen 85 ERYDR 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 123
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.19 E-value=2.9e+02 Score=22.86 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQL 186 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~ 186 (360)
-.+.+++++++.|..|...|+.+......+++.
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777776666554444443
No 124
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.84 E-value=4.3e+02 Score=25.72 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
+|++.|++++..+..++..+.+++..-..+++.+.-.|..
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888877665555555554444443
No 125
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.66 E-value=2.9e+02 Score=23.55 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKL 173 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kL 173 (360)
+..|..+...|..+|..|
T Consensus 10 l~~le~~l~~l~~~~~~L 27 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEEL 27 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 126
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=25.63 E-value=3.5e+02 Score=24.64 Aligned_cols=12 Identities=17% Similarity=0.720 Sum_probs=8.1
Q ss_pred HHHHhhhccccC
Q 018107 227 EFEDMINRKRRR 238 (360)
Q Consensus 227 ~l~~~~~kKRr~ 238 (360)
.|+.++.+||++
T Consensus 150 kl~K~lekkrKK 161 (168)
T PF06102_consen 150 KLDKYLEKKRKK 161 (168)
T ss_pred hHHHHHHHHHhh
Confidence 455577777776
No 127
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.62 E-value=4.6e+02 Score=25.25 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAM 209 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~ 209 (360)
.-|..++++.+.|..|=...-++.+.+...+..||.=++..+....++..-..+++
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777888888888777777777666665554
No 128
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=25.22 E-value=2.3e+02 Score=26.16 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQK 190 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~R 190 (360)
+.|-+.|+++..-+-.||..|||-.-.-+.+...+..+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44556666666666666666666544444444444433
No 129
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.16 E-value=3.2e+02 Score=23.44 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMK 197 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~k 197 (360)
.++.-++.|++....|...+.++.++......++..+.+.++.+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888888888888777777777777666666655443
No 130
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.15 E-value=64 Score=34.46 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
+|+.|+++.+.|.+++..+..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 445555555555444444433
No 131
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=25.08 E-value=2.9e+02 Score=24.89 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=12.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLR 174 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLR 174 (360)
.|..|++.|+..+..+..++...|
T Consensus 15 ~L~~EL~~L~~~r~~i~~~i~~Ar 38 (158)
T PRK05892 15 HLEAELARLRARRDRLAVEVNDRG 38 (158)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355666666655555555554433
No 132
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=25.04 E-value=68 Score=33.07 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=27.2
Q ss_pred CchHHHHHHhccCCCCC----CeEEEcCCCCeEEEeCCcc
Q 018107 38 PPFLTKTYDIVEDCNTN----HIISWSRGSNSFVVWDPQA 73 (360)
Q Consensus 38 p~Fl~KL~~mv~dp~~~----~iIsWs~~G~sFiI~d~~~ 73 (360)
.-|..|-|.++..-.++ .-|.|+|||+...|||.-.
T Consensus 161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L 200 (447)
T KOG4497|consen 161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL 200 (447)
T ss_pred HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence 34667788888765554 2389999999999998743
No 133
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=24.97 E-value=5.1e+02 Score=25.16 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018107 165 VLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLA 206 (360)
Q Consensus 165 ~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLa 206 (360)
.=++++.+|--+|+.....|+.++.++..-....||+-.-|.
T Consensus 57 ~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK 98 (272)
T KOG4552|consen 57 DEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLK 98 (272)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 335566777777777777777777777666666666544443
No 134
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.80 E-value=2.7e+02 Score=29.71 Aligned_cols=46 Identities=15% Similarity=0.323 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQH 200 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQ 200 (360)
+++..|.....+.+|+..+.+.+.+++..-+.++.+++....|+..
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k 393 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKK 393 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777777777777766665555444
No 135
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.46 E-value=5.1e+02 Score=23.14 Aligned_cols=44 Identities=23% Similarity=0.392 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTE 195 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E 195 (360)
+..++..++.+...+..+....+...+........|...++.+.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444444444444444444444444444
No 136
>PLN02678 seryl-tRNA synthetase
Probab=24.44 E-value=3e+02 Score=29.09 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=14.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVK 172 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~k 172 (360)
.+..+++.|+.+++.+-.+|..
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777776666666654
No 137
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.43 E-value=4.2e+02 Score=23.74 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018107 172 KLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLAR 207 (360)
Q Consensus 172 kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak 207 (360)
|+++++.....+++.+.+.+.....+...++..+..
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~ 105 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLW 105 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544444444444443
No 138
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.41 E-value=4.6e+02 Score=27.40 Aligned_cols=56 Identities=7% Similarity=0.167 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhcCChHHHHHH
Q 018107 164 QVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQH------MMSFLARAMQNPSFVQQLA 219 (360)
Q Consensus 164 ~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQ------mm~FLak~~qnp~Fl~qLv 219 (360)
..|..|+.+|..........+..++++|..+...+.. ...++...+++++|-..++
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~i~ 422 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASII 422 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444443333334444444444444433332 2445666666776654443
No 139
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=24.37 E-value=6e+02 Score=27.98 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCC
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH----QQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNP 212 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ----qqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp 212 (360)
+..++.++..+...+..|...+-+ ..+....++..++.++..+...|+++-.-+..+.+++
T Consensus 351 ~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r 415 (656)
T PRK06975 351 LDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNR 415 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 344555555566666666643221 2233445566667777666666665555454444443
No 140
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.17 E-value=3.6e+02 Score=22.61 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018107 169 ELVKLRHQQQNTREYLQLMEQKLRRTEMKQ 198 (360)
Q Consensus 169 Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQ 198 (360)
++.+|+-....++-.+..|..+++.+.+..
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333334444555666666665443
No 141
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.13 E-value=6.5e+02 Score=24.22 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
...++..+++..+.|..|+..|+.+......++..++.++..
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 345666666666666666666666655555555555554443
No 142
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.61 E-value=3.7e+02 Score=22.07 Aligned_cols=44 Identities=14% Similarity=0.343 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRT 194 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~ 194 (360)
..+.-+..|....+.|-.++.++..+...+..++..++.+|+.+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778888888888888888888888888777777654
No 143
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.38 E-value=3.8e+02 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCh
Q 018107 179 NTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPS 213 (360)
Q Consensus 179 ~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~ 213 (360)
.+...+..+.++|..++..|..|..-|..+-++-.
T Consensus 376 ~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~ 410 (560)
T PF06160_consen 376 EIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEK 410 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777778777777776666543
No 144
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=22.27 E-value=5.1e+02 Score=22.35 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
+|...++..|..+..|..+=-.|+-.++..+.+-....+|+..++.+---+
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777877777777766677777777777777777777766554443
No 145
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.23 E-value=1.2e+02 Score=23.38 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhHHH
Q 018107 181 REYLQLMEQKLRRTEMK 197 (360)
Q Consensus 181 ~~~l~~me~RL~~~E~k 197 (360)
+.+|..||+||+..|++
T Consensus 31 EqRLa~LE~rL~~ae~r 47 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQR 47 (60)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555544
No 146
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.11 E-value=5.4e+02 Score=25.57 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLR 174 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLR 174 (360)
+..|+..++.|..|+..|+
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444333
No 147
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.03 E-value=2.4e+02 Score=24.29 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQ 189 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~ 189 (360)
+-.++..||.+...|..|-+.|+-+.+..+..|..++.
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 148
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=22.02 E-value=4.1e+02 Score=21.18 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQ 177 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqq 177 (360)
.+..|..+++.|..-+..+.++.
T Consensus 4 dv~~l~~EkeeL~~klk~~qeel 26 (69)
T PF08912_consen 4 DVANLAKEKEELNNKLKKQQEEL 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 34445555555544444444333
No 149
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.95 E-value=3.5e+02 Score=28.75 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
|++.|+.|...+..|+..|+.|.+....+++.++.++..
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999998888888888887666
No 150
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.86 E-value=6.3e+02 Score=25.19 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=6.2
Q ss_pred ccchHHHHHHhccchh
Q 018107 316 TIDQRFWEDFLNEDVE 331 (360)
Q Consensus 316 ~~~~~fwe~ll~~~~~ 331 (360)
.+..-||..-++.++.
T Consensus 228 ~~~~~f~~~~Fd~am~ 243 (314)
T PF04111_consen 228 SLGRLFSSRKFDKAMV 243 (314)
T ss_dssp ---GGG--SHHHHHHH
T ss_pred hhhhhhhhcchHHHHH
Confidence 3455678655555544
No 151
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.37 E-value=3.5e+02 Score=24.10 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQ 189 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~ 189 (360)
.++.-.+.|...++.|..+|..|+.+...+..+|+.+..
T Consensus 78 ~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 78 KLDKLQDQLEEKKETLEKEIEELESELESISARMDELKK 116 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666788889999999999999988888888776554
No 152
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.37 E-value=3.2e+02 Score=27.94 Aligned_cols=78 Identities=12% Similarity=0.349 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhHHhhH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQ----QNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRK 226 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqq----q~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~~~~k 226 (360)
.|..+++.||+.......++..+.... ..+...+..+|+|+..+|.+...|-.-+. ..-.++-.-..+-.
T Consensus 109 elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~------~~~k~i~~l~~kl~ 182 (370)
T PF02994_consen 109 ELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIK------ELEKRIKKLEDKLD 182 (370)
T ss_dssp ---------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHH
Q ss_pred HHHHhhhc
Q 018107 227 EFEDMINR 234 (360)
Q Consensus 227 ~l~~~~~k 234 (360)
+|++.+.+
T Consensus 183 DlEnrsRR 190 (370)
T PF02994_consen 183 DLENRSRR 190 (370)
T ss_dssp HHHHHHTT
T ss_pred HHHhhccC
No 153
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=21.37 E-value=2.9e+02 Score=26.26 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQK 190 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~R 190 (360)
|-+.|+.+..-+-.||+.|||-.-.-+.+...+.++
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRK 80 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRK 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666655443333333333333
No 154
>smart00338 BRLZ basic region leucin zipper.
Probab=21.30 E-value=3.6e+02 Score=20.17 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLRHQQ 177 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQqq 177 (360)
+..|....+.|..|...|+.+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~ 49 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEI 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 155
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.16 E-value=4e+02 Score=20.62 Aligned_cols=39 Identities=5% Similarity=0.252 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQK 190 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~R 190 (360)
+..++.+.|..+..+..-+.....+......+|..|+.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333334444443333
No 156
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=20.94 E-value=2.7e+02 Score=23.72 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018107 163 KQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFL 205 (360)
Q Consensus 163 ~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FL 205 (360)
...|..++.++...| ..|++.|..++..|..+-..|
T Consensus 59 I~~L~~~v~~~~~~Q-------~~ld~~L~~ie~qQ~eLe~~L 94 (116)
T PF05064_consen 59 ISKLYSEVQKAESEQ-------KRLDQELDFIEAQQKELEELL 94 (116)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444 456666666666666654443
No 157
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.88 E-value=5e+02 Score=28.32 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLR 192 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~ 192 (360)
.+++++..+|++...|--|+.+|+.+.-.+..+|+.+...|.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 578899999999999999999999999888888887776543
No 158
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.83 E-value=6.6e+02 Score=23.08 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018107 173 LRHQQQNTREYLQLMEQKLRRTEMKQQH 200 (360)
Q Consensus 173 LRQqqq~~~~~l~~me~RL~~~E~kQqQ 200 (360)
+..+...++..+..|+.+|..++.+...
T Consensus 110 ~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 110 AEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444433
No 159
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.78 E-value=6.3e+02 Score=22.80 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=10.6
Q ss_pred hHHhhhcccCcccc
Q 018107 90 SFVRQLNTYGFRKV 103 (360)
Q Consensus 90 SFvRQLN~YGFrKv 103 (360)
.||++|..-||..-
T Consensus 6 ~~v~~Le~~Gft~~ 19 (177)
T PF07798_consen 6 KFVKRLEAAGFTEE 19 (177)
T ss_pred HHHHHHHHCCCCHH
Confidence 58888888888654
No 160
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.56 E-value=3.7e+02 Score=20.06 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018107 158 RLRRDKQVLMMELVKL 173 (360)
Q Consensus 158 ~LKrd~~~L~~Ev~kL 173 (360)
.|......|..|...|
T Consensus 30 ~Le~~~~~L~~en~~L 45 (64)
T PF00170_consen 30 ELEEKVEELESENEEL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 161
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=20.52 E-value=1.7e+02 Score=21.08 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
-+.++.+||+++-.|.-||.++.+
T Consensus 25 ~d~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 25 DDEELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356788888888888888887754
No 162
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=20.51 E-value=7.2e+02 Score=23.78 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH-QQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQN 211 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ-qqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qn 211 (360)
|..+-.+|.++.+..-.++.+|.. .++.+++.+..|+..+...+..-|+.+.=|...|..
T Consensus 136 l~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 136 LEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444554455555555544 334566766677777776666666665555555544
No 163
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.31 E-value=2.7e+02 Score=23.60 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLRHQQ 177 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQqq 177 (360)
+..|+...+.+..++.++++..
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~ 103 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKL 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 164
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=20.28 E-value=1.6e+02 Score=25.94 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=43.1
Q ss_pred CCchHHH-HHHhccCCCCCCeEEEcCCCCeEEEeCC-cchhhhh-ccCccCCCChhhHHh-----hhcccCccc
Q 018107 37 PPPFLTK-TYDIVEDCNTNHIISWSRGSNSFVVWDP-QAFSITL-LPKYFKHNNFSSFVR-----QLNTYGFRK 102 (360)
Q Consensus 37 ~p~Fl~K-L~~mv~dp~~~~iIsWs~~G~sFiI~d~-~~F~~~v-LP~yFkh~nfsSFvR-----QLN~YGFrK 102 (360)
.-.|+.| +|.++=....+ .+.|+.+...|+|.|. ..+.+.| +|.-..+-+|++|+. -|..-||..
T Consensus 57 ~~~fI~k~~W~~~fgk~~d-~l~~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~ 129 (152)
T PF04051_consen 57 ILKFICKDFWKMLFGKQAD-NLKTNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPA 129 (152)
T ss_dssp HHHHHHHHHHHHHHSS--S-EEEEETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHhCCCCc-cccccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCce
Confidence 4568888 89998777654 8999996566788765 3333322 454555678888884 467777764
No 165
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.22 E-value=6e+02 Score=25.72 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018107 158 RLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLAR 207 (360)
Q Consensus 158 ~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak 207 (360)
+...+...|..+|+.+++..+.....-..|..+|..+...|++|.+=|.-
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~e 280 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQE 280 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556777777777777777777777788888887778777655553
No 166
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=5.6e+02 Score=23.04 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
+.+.-++.|++..+.|-..+.++.+..+....++..+.+.++.
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777666666666555444444444444443
No 167
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.16 E-value=3.2e+02 Score=29.29 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQ 198 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQ 198 (360)
.+.|.++.+.|.+|+..+.++.+..+..|+.++..++.++.++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444444444555555555555554443
No 168
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.15 E-value=3.9e+02 Score=21.23 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLR 192 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~ 192 (360)
..+.-+..|+.+...+-.++.+|+.+...+...+..++..|.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888887777666666666666554
No 169
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=20.09 E-value=1.9e+02 Score=26.20 Aligned_cols=19 Identities=5% Similarity=-0.045 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLR 174 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLR 174 (360)
+++|+.+.+.|+.++...|
T Consensus 36 ~~~L~~El~~L~~~i~~Ar 54 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQ 54 (160)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554
Done!