Query 018107
Match_columns 360
No_of_seqs 286 out of 1042
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:03:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 3E-40 1E-44 275.6 7.2 95 35-129 2-106 (106)
2 2ldu_A Heat shock factor prote 100.0 2.4E-39 8.3E-44 277.7 7.2 99 34-132 14-123 (125)
3 3hts_B Heat shock transcriptio 100.0 1.7E-33 5.8E-38 233.9 3.2 81 34-114 9-100 (102)
4 1gvj_A C-ETS-1 protein, P54; t 89.2 0.049 1.7E-06 47.6 -1.1 84 29-112 31-119 (146)
5 1bc8_C SAP-1, protein (SAP-1 E 89.1 0.094 3.2E-06 42.6 0.6 74 38-111 5-83 (93)
6 1awc_A Protein (GA binding pro 88.7 0.19 6.4E-06 42.0 2.2 68 44-111 7-79 (110)
7 1fli_A FLI-1; transcription/DN 88.7 0.22 7.6E-06 40.7 2.6 63 37-99 5-68 (98)
8 4avp_A ETS translocation varia 88.3 0.2 6.8E-06 41.5 2.0 75 37-111 11-90 (106)
9 2nny_A C-ETS-1 protein, P54; p 87.5 0.21 7E-06 44.7 1.8 78 34-111 61-143 (171)
10 2ypr_A Protein FEV; transcript 86.5 0.41 1.4E-05 39.4 3.0 75 37-111 7-86 (102)
11 2dao_A Transcription factor ET 80.8 1.2 4.1E-05 37.5 3.5 76 36-111 7-88 (118)
12 3jtg_A ETS-related transcripti 80.0 0.84 2.9E-05 37.6 2.3 72 40-111 7-85 (103)
13 2jee_A YIIU; FTSZ, septum, coi 79.6 13 0.00043 29.4 8.8 26 152-177 25-50 (81)
14 1hbx_G ETS-domain protein ELK- 79.4 0.44 1.5E-05 42.0 0.4 75 38-112 6-85 (157)
15 2lf8_A Transcription factor ET 80.0 0.41 1.4E-05 40.9 0.0 56 43-98 10-67 (128)
16 1wwx_A E74-like factor 5 ESE-2 77.2 1.4 4.7E-05 36.6 2.8 76 35-111 6-88 (107)
17 1pue_E Protein (transcription 74.6 1.1 3.8E-05 35.9 1.5 68 43-111 7-83 (89)
18 1yo5_C SAM pointed domain cont 72.4 1.3 4.5E-05 36.0 1.5 66 36-101 9-77 (97)
19 2yy0_A C-MYC-binding protein; 69.7 8.9 0.00031 27.7 5.2 31 154-184 19-49 (53)
20 3i00_A HIP-I, huntingtin-inter 67.2 37 0.0013 28.3 9.3 42 152-196 13-54 (120)
21 2wt7_A Proto-oncogene protein 65.4 13 0.00045 27.3 5.6 31 151-181 27-57 (63)
22 1t2k_D Cyclic-AMP-dependent tr 59.7 17 0.00058 26.4 5.2 30 151-180 26-55 (61)
23 4dzn_A Coiled-coil peptide CC- 58.6 15 0.00052 23.6 4.1 24 152-175 7-30 (33)
24 3he5_B Synzip2; heterodimeric 58.0 30 0.001 24.3 5.8 40 152-191 8-47 (52)
25 2wt7_B Transcription factor MA 57.6 25 0.00087 28.1 6.3 71 114-193 17-87 (90)
26 2w83_C C-JUN-amino-terminal ki 55.8 13 0.00044 29.0 4.1 41 151-191 34-74 (77)
27 3hnw_A Uncharacterized protein 54.6 77 0.0027 26.8 9.3 35 155-189 76-110 (138)
28 3hnw_A Uncharacterized protein 54.4 44 0.0015 28.3 7.7 50 151-200 65-114 (138)
29 1uix_A RHO-associated kinase; 54.3 71 0.0024 24.5 9.4 10 200-209 57-66 (71)
30 3e98_A GAF domain of unknown f 54.1 31 0.0011 31.8 7.3 78 110-214 41-118 (252)
31 2yy0_A C-MYC-binding protein; 53.5 25 0.00084 25.3 5.1 29 162-190 20-48 (53)
32 4gkw_A Spindle assembly abnorm 52.2 60 0.0021 27.9 8.1 46 153-198 45-90 (167)
33 1kd8_B GABH BLL, GCN4 acid bas 51.4 19 0.00064 24.2 3.8 26 152-177 6-31 (36)
34 3m48_A General control protein 50.8 18 0.00062 23.9 3.6 24 152-175 5-28 (33)
35 3oja_B Anopheles plasmodium-re 50.8 1.2E+02 0.0041 30.2 11.6 14 162-175 517-530 (597)
36 1deb_A APC protein, adenomatou 50.0 70 0.0024 23.1 8.1 39 156-194 5-43 (54)
37 4etp_A Kinesin-like protein KA 46.8 59 0.002 32.0 8.4 47 155-201 4-50 (403)
38 3a7p_A Autophagy protein 16; c 46.7 1.2E+02 0.0042 26.4 9.3 32 170-201 98-129 (152)
39 1hjb_A Ccaat/enhancer binding 46.4 28 0.00095 27.6 4.8 28 152-179 41-68 (87)
40 1jnm_A Proto-oncogene C-JUN; B 46.1 18 0.0006 26.5 3.4 31 151-181 26-56 (62)
41 3uux_B Mitochondrial division 45.3 1.2E+02 0.0041 28.3 9.6 72 156-227 151-222 (242)
42 1ci6_A Transcription factor AT 44.9 36 0.0012 25.0 5.0 28 151-178 27-54 (63)
43 2dgc_A Protein (GCN4); basic d 43.9 18 0.00061 26.8 3.2 27 151-177 34-60 (63)
44 4dzn_A Coiled-coil peptide CC- 42.6 54 0.0018 21.1 4.7 22 155-176 3-24 (33)
45 1wt6_A Myotonin-protein kinase 42.5 84 0.0029 24.7 6.9 41 151-195 18-58 (81)
46 3na7_A HP0958; flagellar bioge 41.4 1.1E+02 0.0037 27.9 8.8 13 315-327 206-218 (256)
47 3c3g_A Alpha/beta peptide with 39.6 35 0.0012 22.5 3.6 24 152-175 5-28 (33)
48 1kd8_A GABH AIV, GCN4 acid bas 39.6 37 0.0013 22.8 3.8 26 152-177 6-31 (36)
49 3cue_D Transport protein parti 39.5 20 0.00069 32.2 3.4 63 37-100 86-157 (193)
50 1wt6_A Myotonin-protein kinase 39.2 87 0.003 24.6 6.5 22 179-200 35-56 (81)
51 3q8t_A Beclin-1; autophagy, AT 38.8 1.4E+02 0.0049 23.5 11.4 50 151-200 8-57 (96)
52 3c3f_A Alpha/beta peptide with 38.4 40 0.0014 22.3 3.8 24 152-175 6-29 (34)
53 1a93_B MAX protein, coiled coi 38.4 47 0.0016 22.1 4.1 17 154-170 14-30 (34)
54 1jcd_A Major outer membrane li 38.0 1.1E+02 0.0038 22.0 6.7 42 152-193 9-50 (52)
55 1deb_A APC protein, adenomatou 36.5 1.2E+02 0.0041 21.9 7.1 42 152-193 8-49 (54)
56 2oxj_A Hybrid alpha/beta pepti 36.4 42 0.0014 22.3 3.6 24 152-175 6-29 (34)
57 1uo4_A General control protein 35.5 47 0.0016 22.0 3.8 24 152-175 6-29 (34)
58 2wq1_A General control protein 34.6 51 0.0017 21.7 3.8 24 152-175 5-28 (33)
59 2bni_A General control protein 34.6 50 0.0017 21.9 3.8 24 152-175 6-29 (34)
60 2hy6_A General control protein 33.9 52 0.0018 21.8 3.8 24 152-175 6-29 (34)
61 3tnu_A Keratin, type I cytoske 33.9 2E+02 0.0068 23.7 10.3 40 153-192 37-76 (131)
62 3efg_A Protein SLYX homolog; x 33.8 68 0.0023 24.6 5.2 41 155-195 22-62 (78)
63 4emc_A Monopolin complex subun 32.7 1.4E+02 0.0048 26.9 7.7 33 157-189 23-55 (190)
64 4etp_A Kinesin-like protein KA 32.5 1.2E+02 0.0042 29.7 8.1 32 164-195 6-37 (403)
65 3tnu_B Keratin, type II cytosk 32.1 2.1E+02 0.0072 23.4 11.8 42 152-193 34-75 (129)
66 3m91_A Proteasome-associated A 31.8 1.2E+02 0.0041 21.7 5.8 35 152-186 14-48 (51)
67 2xdj_A Uncharacterized protein 31.7 1.1E+02 0.0039 23.7 6.2 37 158-194 24-60 (83)
68 1deq_A Fibrinogen (alpha chain 31.7 2.8E+02 0.0097 27.5 10.3 12 226-237 151-162 (390)
69 1nkp_B MAX protein, MYC proto- 31.6 51 0.0018 25.0 4.1 29 156-184 49-77 (83)
70 1lwu_C Fibrinogen gamma chain; 31.6 1.1E+02 0.0038 29.5 7.3 34 166-199 10-43 (323)
71 1s1c_X RHO-associated, coiled- 31.4 1.7E+02 0.006 22.3 8.7 18 161-178 6-23 (71)
72 1nkp_A C-MYC, MYC proto-oncoge 31.4 84 0.0029 24.4 5.4 32 155-186 53-84 (88)
73 3bj4_A Potassium voltage-gated 31.3 80 0.0027 22.6 4.7 31 179-209 14-44 (49)
74 3u06_A Protein claret segregat 30.6 1.7E+02 0.0057 28.9 8.7 30 166-195 15-44 (412)
75 3ra3_B P2F; coiled coil domain 30.2 57 0.002 20.3 3.3 20 156-175 2-21 (28)
76 1gd2_E Transcription factor PA 30.1 55 0.0019 24.8 3.9 34 151-184 33-66 (70)
77 1gu4_A CAAT/enhancer binding p 29.8 49 0.0017 25.6 3.7 28 151-178 40-67 (78)
78 1sz7_A BET3 homolog, trafficki 29.3 40 0.0014 30.4 3.6 64 37-101 83-154 (200)
79 1dh3_A Transcription factor CR 27.6 38 0.0013 24.3 2.6 26 151-176 26-51 (55)
80 3t97_C Nuclear pore glycoprote 27.4 1.5E+02 0.0052 22.0 5.9 36 163-205 14-49 (64)
81 4e61_A Protein BIM1; EB1-like 27.0 2.6E+02 0.0089 22.9 7.8 32 166-197 9-40 (106)
82 3ghg_A Fibrinogen alpha chain; 27.0 1.3E+02 0.0046 31.1 7.3 78 154-237 81-159 (562)
83 3mq7_A Bone marrow stromal ant 26.3 1E+02 0.0035 25.8 5.2 23 163-185 73-95 (121)
84 3na7_A HP0958; flagellar bioge 26.1 2E+02 0.007 26.0 7.9 21 183-203 98-118 (256)
85 3ljm_A Coil Ser L9C; de novo d 25.2 82 0.0028 20.0 3.4 23 173-195 6-28 (31)
86 2r2v_A GCN4 leucine zipper; co 24.6 95 0.0033 20.6 3.8 24 152-175 6-29 (34)
87 1nlw_A MAD protein, MAX dimeri 24.3 95 0.0033 23.8 4.5 29 155-183 48-76 (80)
88 2jee_A YIIU; FTSZ, septum, coi 23.7 2.6E+02 0.009 21.8 9.3 34 152-185 11-44 (81)
89 3kqg_A Langerin, C-type lectin 23.7 1E+02 0.0036 25.6 5.1 14 152-165 4-17 (182)
90 2dq0_A Seryl-tRNA synthetase; 23.7 2.2E+02 0.0077 28.3 8.3 47 151-197 42-91 (455)
91 3q8t_A Beclin-1; autophagy, AT 23.1 2.8E+02 0.0095 21.9 8.1 24 153-176 24-47 (96)
92 2zqm_A Prefoldin beta subunit 23.1 2.5E+02 0.0085 21.9 7.0 43 151-193 67-109 (117)
93 3qne_A Seryl-tRNA synthetase, 23.0 2.3E+02 0.008 28.7 8.3 50 151-200 44-96 (485)
94 1g6u_A Domain swapped dimer; d 22.4 2E+02 0.0067 19.8 6.6 15 182-196 27-41 (48)
95 2v66_B Nuclear distribution pr 22.1 3.3E+02 0.011 22.3 11.4 44 163-206 37-80 (111)
96 3u06_A Protein claret segregat 21.5 2.5E+02 0.0087 27.6 8.1 35 162-196 4-38 (412)
97 1go4_E MAD1 (mitotic arrest de 21.3 1.7E+02 0.0059 23.7 5.6 31 154-184 12-42 (100)
98 1wle_A Seryl-tRNA synthetase; 21.3 3.7E+02 0.013 27.3 9.4 23 152-174 82-104 (501)
99 3a7p_A Autophagy protein 16; c 21.1 4.1E+02 0.014 23.0 10.5 63 154-223 68-138 (152)
100 4emc_A Monopolin complex subun 20.5 3.1E+02 0.011 24.6 7.6 40 152-191 25-64 (190)
101 3swy_A Cyclic nucleotide-gated 20.1 2.3E+02 0.0079 19.8 6.5 42 152-196 3-44 (46)
102 1fxk_A Prefoldin; archaeal pro 20.1 2.6E+02 0.0088 21.5 6.4 43 151-193 62-104 (107)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=3e-40 Score=275.56 Aligned_cols=95 Identities=43% Similarity=0.825 Sum_probs=91.5
Q ss_pred CCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC----------
Q 018107 35 AGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD---------- 104 (360)
Q Consensus 35 ~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~---------- 104 (360)
+++|+||.|||+||+||+++++|+|+++|++|+|+|+.+|+++|||+||||+||+|||||||+|||||+.
T Consensus 2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~ 81 (106)
T 1hks_A 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD 81 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCceEecCCccccchhcccccccc
Q 018107 105 PDRWEFANEGFLRGQRHLLKNIRRR 129 (360)
Q Consensus 105 ~d~~eF~h~~F~Rg~~~LL~~IkRr 129 (360)
++.|+|+|++|+||+++||.+|+||
T Consensus 82 ~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 82 RDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCceEEECcCccCcCHHHHhhCcCC
Confidence 5789999999999999999999997
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=277.70 Aligned_cols=99 Identities=54% Similarity=0.888 Sum_probs=94.3
Q ss_pred CCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC---------
Q 018107 34 DAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD--------- 104 (360)
Q Consensus 34 ~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~--------- 104 (360)
...+|+||.|||+||+||++++||+|+++|++|+|+|+.+|+++|||+||||+||+||+||||+|||+||.
T Consensus 14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~ 93 (125)
T 2ldu_A 14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVK 93 (125)
T ss_dssp SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSS
T ss_pred CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred --CCCceEecCCccccchhcccccccccCC
Q 018107 105 --PDRWEFANEGFLRGQRHLLKNIRRRKTT 132 (360)
Q Consensus 105 --~d~~eF~h~~F~Rg~~~LL~~IkRr~~~ 132 (360)
++.|+|+|++|+||+++||.+|+||++.
T Consensus 94 ~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 94 PERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp CSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred CCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 4689999999999999999999999875
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.97 E-value=1.7e-33 Score=233.85 Aligned_cols=81 Identities=47% Similarity=0.869 Sum_probs=77.1
Q ss_pred CCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC---------
Q 018107 34 DAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD--------- 104 (360)
Q Consensus 34 ~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~--------- 104 (360)
...+|+||.|||.||+||++++||+|+++|++|||+|+..|+++|||+||||+||+||+||||+|||||+.
T Consensus 9 ~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~ 88 (102)
T 3hts_B 9 SMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLS 88 (102)
T ss_dssp -CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------
T ss_pred CCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --CCCceEecCC
Q 018107 105 --PDRWEFANEG 114 (360)
Q Consensus 105 --~d~~eF~h~~ 114 (360)
+++|||+|++
T Consensus 89 ~~~~~wEF~n~~ 100 (102)
T 3hts_B 89 NNDSRWEFENER 100 (102)
T ss_dssp CCSCCEEEEECC
T ss_pred CCcCCeEecCCC
Confidence 7899999986
No 4
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=89.23 E-value=0.049 Score=47.58 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=60.7
Q ss_pred CCCCCCCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhcccCcc----cc
Q 018107 29 REGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTYGFR----KV 103 (360)
Q Consensus 29 ~e~~~~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~YGFr----Kv 103 (360)
+.+....++.....=|.++|.|++..++|+|...+--|.+.|+++.++..-.+ -=..-||...-|-|..|-=+ ||
T Consensus 31 ~~~~~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv 110 (146)
T 1gvj_A 31 LAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKT 110 (146)
T ss_dssp HHHHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred ccCCCCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEec
Confidence 33333556777777888999999999999999998899999999888754321 11345788888988887433 55
Q ss_pred CCCCceEec
Q 018107 104 DPDRWEFAN 112 (360)
Q Consensus 104 ~~d~~eF~h 112 (360)
...+..|..
T Consensus 111 ~GkrlvY~F 119 (146)
T 1gvj_A 111 AGKRYVYRF 119 (146)
T ss_dssp TTSSSEEEE
T ss_pred CCCeEEEEe
Confidence 555656543
No 5
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=89.10 E-value=0.094 Score=42.56 Aligned_cols=74 Identities=15% Similarity=0.310 Sum_probs=53.6
Q ss_pred CchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC---c-cccCCCCceEe
Q 018107 38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG---F-RKVDPDRWEFA 111 (360)
Q Consensus 38 p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG---F-rKv~~d~~eF~ 111 (360)
.....=|.++|.||++.++|+|...+.-|.+.|+++.++.--. +-=..-||...-|-|..|- . +||...+..|.
T Consensus 5 i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~ 83 (93)
T 1bc8_C 5 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK 83 (93)
T ss_dssp CCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence 3444557889999999999999988779999999988875433 1114557888999998874 2 35555565554
No 6
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=88.74 E-value=0.19 Score=41.98 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=49.0
Q ss_pred HHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhcccCc----cccCCCCceEe
Q 018107 44 TYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTYGF----RKVDPDRWEFA 111 (360)
Q Consensus 44 L~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~ 111 (360)
|.++|.||++.++|+|...+.-|.+.||+..++.--.+ -=..-||...-|-|..|.= +||...+..|.
T Consensus 7 LleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~ 79 (110)
T 1awc_A 7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK 79 (110)
T ss_dssp HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence 57889999999999999988899999998888754332 1133468888888888743 23444445553
No 7
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=88.73 E-value=0.22 Score=40.73 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=46.4
Q ss_pred CCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107 37 PPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG 99 (360)
Q Consensus 37 ~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG 99 (360)
......=|.++|+|+++.++|+|...+--|.+.|+++.++.--. +-=..-||...-|-|..|-
T Consensus 5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 33444556778899999999999988889999999888874332 1113457888888887774
No 8
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=88.26 E-value=0.2 Score=41.54 Aligned_cols=75 Identities=20% Similarity=0.381 Sum_probs=54.7
Q ss_pred CCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhccc---Cc-cccCCCCceEe
Q 018107 37 PPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTY---GF-RKVDPDRWEFA 111 (360)
Q Consensus 37 ~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~ 111 (360)
......=|.++|+|+++.++|+|...+..|.+.|++..++.--. +-=..-||..+-|-|..| |. +||...+..|.
T Consensus 11 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYk 90 (106)
T 4avp_A 11 SLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK 90 (106)
T ss_dssp CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEE
T ss_pred cEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEE
Confidence 34555557788999999999999998889999999888864322 111355799999998887 33 46665665554
No 9
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=87.51 E-value=0.21 Score=44.66 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=57.2
Q ss_pred CCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhcccCcc----ccCCCCc
Q 018107 34 DAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTYGFR----KVDPDRW 108 (360)
Q Consensus 34 ~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~YGFr----Kv~~d~~ 108 (360)
..++.....=|.++|.|+...++|+|...+--|.+.|+++.++..-.+ -=..-||...-|-|..|-=+ ||...+.
T Consensus 61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl 140 (171)
T 2nny_A 61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 140 (171)
T ss_dssp TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTT
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeE
Confidence 445666667788899999999999999998899999999888754331 11344688888988887543 4554555
Q ss_pred eEe
Q 018107 109 EFA 111 (360)
Q Consensus 109 eF~ 111 (360)
.|.
T Consensus 141 vY~ 143 (171)
T 2nny_A 141 VYR 143 (171)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 10
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=86.51 E-value=0.41 Score=39.37 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=53.0
Q ss_pred CCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccCc----cccCCCCceEe
Q 018107 37 PPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYGF----RKVDPDRWEFA 111 (360)
Q Consensus 37 ~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~ 111 (360)
......=|.++|+|+++.++|+|...+.-|.+.||++.++.--. +-=..-||.-+-|-|..|-= +||...+..|.
T Consensus 7 ~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYk 86 (102)
T 2ypr_A 7 QIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYR 86 (102)
T ss_dssp SCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEE
T ss_pred cEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence 33444556788999999999999988889999999888864322 11135678889998888732 45555555553
No 11
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.81 E-value=1.2 Score=37.53 Aligned_cols=76 Identities=22% Similarity=0.369 Sum_probs=54.4
Q ss_pred CCCchHHHHHHhccCCCCCCeEEEcCC-CCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhccc---Cc-cccCCCCce
Q 018107 36 GPPPFLTKTYDIVEDCNTNHIISWSRG-SNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTY---GF-RKVDPDRWE 109 (360)
Q Consensus 36 ~~p~Fl~KL~~mv~dp~~~~iIsWs~~-G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y---GF-rKv~~d~~e 109 (360)
+....-.=|.++|.||.+.++|+|... +.-|.+.||+..++..-. +-=..-||...-|-|..| |. +||...+..
T Consensus 7 g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~v 86 (118)
T 2dao_A 7 GCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLL 86 (118)
T ss_dssp CCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSE
T ss_pred cchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEE
Confidence 345555667889999999999999874 458999999888875433 212345789999999888 33 456555655
Q ss_pred Ee
Q 018107 110 FA 111 (360)
Q Consensus 110 F~ 111 (360)
|.
T Consensus 87 Y~ 88 (118)
T 2dao_A 87 FR 88 (118)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 12
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=80.05 E-value=0.84 Score=37.58 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=48.8
Q ss_pred hHHHHHHhccCCC-CCCeEEEcCC-CCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC---c-cccCCCCceEe
Q 018107 40 FLTKTYDIVEDCN-TNHIISWSRG-SNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG---F-RKVDPDRWEFA 111 (360)
Q Consensus 40 Fl~KL~~mv~dp~-~~~iIsWs~~-G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG---F-rKv~~d~~eF~ 111 (360)
...=|.++|.||+ ..++|+|... .--|.+.||+..++.--. +-=..-||..+-|-|..|- . +||...+..|.
T Consensus 7 LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~ 85 (103)
T 3jtg_A 7 LWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 85 (103)
T ss_dssp HHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred HHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence 3344677889987 5689999975 458999999888864322 1114568999999988873 2 34554555553
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.57 E-value=13 Score=29.38 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQ 177 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqq 177 (360)
|.-+++.||..|..|..|...++...
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677888888888777777744433
No 14
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=79.39 E-value=0.44 Score=42.00 Aligned_cols=75 Identities=13% Similarity=0.286 Sum_probs=53.8
Q ss_pred CchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhcccCc----cccCCCCceEec
Q 018107 38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTYGF----RKVDPDRWEFAN 112 (360)
Q Consensus 38 p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~h 112 (360)
.....=|.++|.|+.+.++|+|...+.-|.+.|+++.++..-.+ -=..-||...-|-|..|-= +||...+..|..
T Consensus 6 i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF 85 (157)
T 1hbx_G 6 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 85 (157)
T ss_dssp CCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence 34445567889999999999999887799999999888754331 1134578888898888742 345555555543
No 15
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=79.99 E-value=0.41 Score=40.87 Aligned_cols=56 Identities=18% Similarity=0.382 Sum_probs=37.8
Q ss_pred HHHHhccCCCCCCeEEEcCCC-CeEEEeCCcchhhhhccC-ccCCCChhhHHhhhccc
Q 018107 43 KTYDIVEDCNTNHIISWSRGS-NSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTY 98 (360)
Q Consensus 43 KL~~mv~dp~~~~iIsWs~~G-~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~Y 98 (360)
=|.++|.|+++.++|+|...+ .-|.+.|++..++.--.+ -=..-||...-|-|..|
T Consensus 10 FLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyY 67 (128)
T 2lf8_A 10 YVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHY 67 (128)
Confidence 356789999999999998854 489999998777643221 11123456666666655
No 16
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=77.21 E-value=1.4 Score=36.57 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=52.1
Q ss_pred CCCCchHHHHHHhccCCC-CCCeEEEcCC-CCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhcccCc----cccCCCC
Q 018107 35 AGPPPFLTKTYDIVEDCN-TNHIISWSRG-SNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTYGF----RKVDPDR 107 (360)
Q Consensus 35 ~~~p~Fl~KL~~mv~dp~-~~~iIsWs~~-G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~YGF----rKv~~d~ 107 (360)
.+......=|.+||.||+ ..++|+|... .--|.+.|+++.++.--.+ -=..-||...-|-|..|-= +||. .+
T Consensus 6 ~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~-~r 84 (107)
T 1wwx_A 6 SGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-RR 84 (107)
T ss_dssp CSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS-SS
T ss_pred CCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc-ce
Confidence 345566667788999986 5689999874 5689999998888753221 1134578888898888742 4553 55
Q ss_pred ceEe
Q 018107 108 WEFA 111 (360)
Q Consensus 108 ~eF~ 111 (360)
..|.
T Consensus 85 lvY~ 88 (107)
T 1wwx_A 85 LVYK 88 (107)
T ss_dssp SEEE
T ss_pred EEEE
Confidence 5553
No 17
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=74.61 E-value=1.1 Score=35.94 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=45.7
Q ss_pred HHHHhccCCCCCCeEEEcCC-CCeEEEe--CCcchhhhhccC--ccCCCChhhHHhhhcccCc----cccCCCCceEe
Q 018107 43 KTYDIVEDCNTNHIISWSRG-SNSFVVW--DPQAFSITLLPK--YFKHNNFSSFVRQLNTYGF----RKVDPDRWEFA 111 (360)
Q Consensus 43 KL~~mv~dp~~~~iIsWs~~-G~sFiI~--d~~~F~~~vLP~--yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~ 111 (360)
=|.++|.||++.++|+|... ..-|.+. |+++.++.--.+ .=+.-||...-|-|..|.= +||. .+..|.
T Consensus 7 FL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r~vY~ 83 (89)
T 1pue_E 7 FLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KKLTYQ 83 (89)
T ss_dssp HHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-STTEEE
T ss_pred HHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ceEEEe
Confidence 35788999999999999864 3568775 777777653322 1125578889898888732 3454 455543
No 18
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=72.40 E-value=1.3 Score=36.05 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=48.0
Q ss_pred CCCchHHHHHHhccCCC-CCCeEEEcC-CCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccCcc
Q 018107 36 GPPPFLTKTYDIVEDCN-TNHIISWSR-GSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYGFR 101 (360)
Q Consensus 36 ~~p~Fl~KL~~mv~dp~-~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGFr 101 (360)
+......=|.++|.||+ +.++|+|.. .+--|.+.|+++.++.--. +-=..-||...-|-|..|--+
T Consensus 9 ~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~ 77 (97)
T 1yo5_C 9 QPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 77 (97)
T ss_dssp CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred CeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence 34555666788999986 478999985 5778999999888875332 112345788999999888543
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.65 E-value=8.9 Score=27.67 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYL 184 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l 184 (360)
.+++.|+.+++.|..++..|+++++.+..++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888777777777777665555443
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.20 E-value=37 Score=28.34 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~ 196 (360)
-+..|+.|+++.+.|..|+.+++.+.+. .+..|+.|+..+|.
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~---~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQR---VVLQLKGHVSELEA 54 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3567999999999999999999887753 33444455554443
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.45 E-value=13 Score=27.32 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=24.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTR 181 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~ 181 (360)
.|..+++.|..+|..|..||..|+.+.....
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888899999999988888877764433
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.69 E-value=17 Score=26.40 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNT 180 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~ 180 (360)
.|+.+++.|..+|..|..||..|+.+....
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888776433
No 23
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=58.65 E-value=15 Score=23.64 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
+..||..||++..+|.-|+..|+|
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555555555555555444
No 24
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=58.05 E-value=30 Score=24.32 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKL 191 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL 191 (360)
+...|.+||+|+-.|...-..|..-.-+.+.++..++..+
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 4566777888776666555555444444445555444433
No 25
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=57.62 E-value=25 Score=28.07 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=40.0
Q ss_pred CccccchhcccccccccCCCCccchhcccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 114 GFLRGQRHLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 114 ~F~Rg~~~LL~~IkRr~~~~~~~~qq~~~~~~e~g~~~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
++.+.....|+.++|+-. +-.....|-. -=-.+...|..++..|+.|+..|+++...+...+..|.+++..
T Consensus 17 gls~eev~~lKq~RRtlK-----NRgyAq~CR~----Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLK-----NRGYAQSCRY----KRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp TCCHHHHHHHHHHHHHHH-----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhh-----hhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777766532 2222223310 0113455666777777777777777777777777777666653
No 26
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.79 E-value=13 Score=29.01 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKL 191 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL 191 (360)
+|-.+++.|-.++.+|..|+..+++-.......+..||+.|
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999988887655555555555443
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.60 E-value=77 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQ 189 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~ 189 (360)
+++.|..+.+.+-.|+..|+++....+..+..+..
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333333333
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.40 E-value=44 Score=28.33 Aligned_cols=50 Identities=6% Similarity=0.098 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQH 200 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQ 200 (360)
++-.++-.++++...|..++..+..+.+....++.....++...++.-..
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~ 114 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666665554333
No 29
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=54.33 E-value=71 Score=24.47 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q 018107 200 HMMSFLARAM 209 (360)
Q Consensus 200 Qmm~FLak~~ 209 (360)
|-++-||-+|
T Consensus 57 QAVNKLAEIM 66 (71)
T 1uix_A 57 QAVNKLAEIM 66 (71)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 30
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=54.13 E-value=31 Score=31.84 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=34.8
Q ss_pred EecCCccccchhcccccccccCCCCccchhcccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 110 FANEGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQ 189 (360)
Q Consensus 110 F~h~~F~Rg~~~LL~~IkRr~~~~~~~~qq~~~~~~e~g~~~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~ 189 (360)
=.||.|.-.+++||..++=..+.. +. .+|. -..+.+||++....+.++..|.+
T Consensus 41 ~~~PdFf~~~~~Ll~~L~lph~~~--------~a------VSL~-------------erQ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 41 SQHPEFFVEHDELIPELRIPHQPG--------DA------VSLV-------------ERQVRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp ----------------------------------------CHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHhhCHHHHHhCCCCCCCC--------Cc------ccHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999999999885322110 10 0111 11255566666777777778888
Q ss_pred HHHHhHHHHHHHHHHHHHHhcCChH
Q 018107 190 KLRRTEMKQQHMMSFLARAMQNPSF 214 (360)
Q Consensus 190 RL~~~E~kQqQmm~FLak~~qnp~F 214 (360)
.-+..+....++..+..+++.-.+|
T Consensus 94 ~A~~Ne~l~~~~~~l~l~LL~a~sl 118 (252)
T 3e98_A 94 VARENDRLFDKTRRLVLDLLDATSL 118 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 8888888888888888877776544
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.49 E-value=25 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 162 DKQVLMMELVKLRHQQQNTREYLQLMEQK 190 (360)
Q Consensus 162 d~~~L~~Ev~kLRQqqq~~~~~l~~me~R 190 (360)
|.+.|..|+..||++......+++.+..|
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444433
No 32
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=52.22 E-value=60 Score=27.94 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQ 198 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQ 198 (360)
.+.+++|++.+.+-..||.+||.+...++..+.....-|......|
T Consensus 45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQ 90 (167)
T 4gkw_A 45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQ 90 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHH
Confidence 3567888888888888999998888777777776666665544443
No 33
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=51.40 E-value=19 Score=24.23 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQ 177 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqq 177 (360)
|+..++.|...+..|..||.+||.-.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 67889999999999999999997643
No 34
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=50.81 E-value=18 Score=23.87 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
|+..++.|-.++..|..||.+|+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 678899999999999999999875
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.77 E-value=1.2e+02 Score=30.23 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 018107 162 DKQVLMMELVKLRH 175 (360)
Q Consensus 162 d~~~L~~Ev~kLRQ 175 (360)
+.+.+..++.++++
T Consensus 517 ~~~~~~~~~~~~~~ 530 (597)
T 3oja_B 517 RQAFKLRETQARRT 530 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 33333333333333
No 36
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=50.04 E-value=70 Score=23.10 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018107 156 VDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRT 194 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~ 194 (360)
+++|-++-+.|..|-..||++.++...++..+|..--.|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 455666667777777777777777777777666644443
No 37
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=46.83 E-value=59 Score=32.03 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
+++.|+.+...|.+++..+.++.+..+..++.+.+++...|..-.++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555565555555666666666666655443333
No 38
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=46.74 E-value=1.2e+02 Score=26.36 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018107 170 LVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201 (360)
Q Consensus 170 v~kLRQqqq~~~~~l~~me~RL~~~E~kQqQm 201 (360)
+..++.++...+.++..++++++.++...+.+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777777766554
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.44 E-value=28 Score=27.58 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQN 179 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~ 179 (360)
+..++..|..+|..|..+|..|+.+...
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776665543
No 40
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=46.15 E-value=18 Score=26.45 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=24.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTR 181 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~ 181 (360)
.|+.+++.|..+|..|..+|..|+.+.....
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888887764433
No 41
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=45.33 E-value=1.2e+02 Score=28.28 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhHHhhHH
Q 018107 156 VDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKE 227 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~~~~k~ 227 (360)
+..|++..+.+..++.-|-=+..-+..++..+..+|+.+..+++.++.-||++=++-.||-.-+..-+.|.+
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 356788888888777766555566788888888999999999999999999999988888766655444433
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.89 E-value=36 Score=25.00 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQ 178 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq 178 (360)
.|..+++.|+.+|..|..+|..|+.+.+
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777776654
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=43.91 E-value=18 Score=26.81 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQ 177 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqq 177 (360)
.|+.+++.|+.+|..|..|+..|+++.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999988764
No 44
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.62 E-value=54 Score=21.09 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQ 176 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQq 176 (360)
||..||++..+|..|+..|+=+
T Consensus 3 eiaalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776666666543
No 45
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.52 E-value=84 Score=24.67 Aligned_cols=41 Identities=32% Similarity=0.354 Sum_probs=24.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTE 195 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E 195 (360)
.|+.|| +-++.+..|+.+.|--.+++..+|+..+.|.+.++
T Consensus 18 ALeaEI----qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~ 58 (81)
T 1wt6_A 18 ALEEEV----LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLE 58 (81)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 34667777777777766666655555555544443
No 46
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.41 E-value=1.1e+02 Score=27.93 Aligned_cols=13 Identities=8% Similarity=0.557 Sum_probs=8.1
Q ss_pred cccchHHHHHHhc
Q 018107 315 FTIDQRFWEDFLN 327 (360)
Q Consensus 315 ~~~~~~fwe~ll~ 327 (360)
-.|+...+-++..
T Consensus 206 ~~lppq~~~~i~~ 218 (256)
T 3na7_A 206 IRLNDKIYTEVLT 218 (256)
T ss_dssp CBCCHHHHHHHHH
T ss_pred eeeCHHHHHHHHC
Confidence 3566666666654
No 47
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.64 E-value=35 Score=22.51 Aligned_cols=24 Identities=4% Similarity=0.202 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
|+..++.|=..+..|..||.+||.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678888888999999999998875
No 48
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=39.60 E-value=37 Score=22.80 Aligned_cols=26 Identities=23% Similarity=0.412 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQ 177 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqq 177 (360)
|+.+++.|-..+..|-.||.+||.-.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77889999999999999999997643
No 49
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=39.48 E-value=20 Score=32.15 Aligned_cols=63 Identities=21% Similarity=0.375 Sum_probs=48.7
Q ss_pred CCchHHH-HHHhccCCCCCCeEEEcCCCCeEEE-eCCcchhhhh-ccCcc-CCCChhhHHh-----hhcccCc
Q 018107 37 PPPFLTK-TYDIVEDCNTNHIISWSRGSNSFVV-WDPQAFSITL-LPKYF-KHNNFSSFVR-----QLNTYGF 100 (360)
Q Consensus 37 ~p~Fl~K-L~~mv~dp~~~~iIsWs~~G~sFiI-~d~~~F~~~v-LP~yF-kh~nfsSFvR-----QLN~YGF 100 (360)
...|+.| +|.++=.-.. +...|+++++.|+| .|..-+...| +|... ..-+|++|+. -|.+-||
T Consensus 86 ~l~fI~k~~Wk~lfgk~~-d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 86 TSEVLSKCAFKIFLNITP-NITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHHHSSCCC-CCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 4568855 7988877654 47889999999999 7777666655 78776 6779999984 4788899
No 50
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.18 E-value=87 Score=24.59 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 018107 179 NTREYLQLMEQKLRRTEMKQQH 200 (360)
Q Consensus 179 ~~~~~l~~me~RL~~~E~kQqQ 200 (360)
.++.-..+.+.+|+..|.+.+-
T Consensus 35 ~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 51
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=38.82 E-value=1.4e+02 Score=23.55 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQH 200 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQ 200 (360)
.+..++..|+.+-..|..|+..|..+...+...|..++..++.....-.+
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~ 57 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ 57 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46788999999999999999999999989999998888877776655443
No 52
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=38.40 E-value=40 Score=22.32 Aligned_cols=24 Identities=4% Similarity=0.137 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
|+..++.|=..+..|..||.+||.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 678888888899999999998875
No 53
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=38.37 E-value=47 Score=22.05 Aligned_cols=17 Identities=24% Similarity=0.558 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMEL 170 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev 170 (360)
.+|+.||++|..|-.+|
T Consensus 14 qDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45555555555554444
No 54
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.96 E-value=1.1e+02 Score=21.95 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
|..+|+.|..+-..|..+|..+|-..+..+.+-..-.+||..
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455666666666666667777776666666666666666643
No 55
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.47 E-value=1.2e+02 Score=21.89 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
|-.+++-||++|..|.+|+..--.+....+.+--.|.+-+..
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 456788999999999999998888777777766666665543
No 56
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=36.42 E-value=42 Score=22.28 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
|+..++.|=.+++.|..||.+||.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 678888888999999999998874
No 57
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=35.54 E-value=47 Score=22.02 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
|+..++.|=..+..|..||.+|+.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678888888899999999998875
No 58
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=34.61 E-value=51 Score=21.72 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
|+..++.|-..+..|..||.+|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 677888888888999999988864
No 59
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.57 E-value=50 Score=21.90 Aligned_cols=24 Identities=8% Similarity=0.375 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
|+..++.|=..+..|..||.+||.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 678889999999999999999875
No 60
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=33.91 E-value=52 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
|+..++.|-..+..|-.||.+|+.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678889999999999999999875
No 61
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.87 E-value=2e+02 Score=23.66 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLR 192 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~ 192 (360)
..+|..|++..+.|..|+..++.+.......+..++.|..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566677777777777777776665555555555555543
No 62
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.80 E-value=68 Score=24.65 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTE 195 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E 195 (360)
.+.-.-.-.+.|...|++..++....+.++..|.+|++.++
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444555555555555455555555555554443
No 63
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.68 E-value=1.4e+02 Score=26.89 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 157 DRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQ 189 (360)
Q Consensus 157 ~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~ 189 (360)
..|..++..|.+++....++.+..+.++++++.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444333333333333333333
No 64
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.45 E-value=1.2e+02 Score=29.71 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018107 164 QVLMMELVKLRHQQQNTREYLQLMEQKLRRTE 195 (360)
Q Consensus 164 ~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E 195 (360)
..|..|+..|+++....+..+..++.+++.+.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444443
No 65
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.07 E-value=2.1e+02 Score=23.40 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
...+|..|++..+.|..|+..++.+.......+..++.|...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888877776777777666665543
No 66
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.77 E-value=1.2e+02 Score=21.66 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQL 186 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~ 186 (360)
+..++..|...|..|..-+...|++...+..++..
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666677777777766666555544
No 67
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.74 E-value=1.1e+02 Score=23.72 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018107 158 RLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRT 194 (360)
Q Consensus 158 ~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~ 194 (360)
.|....+.|..||.+||=+.+....++..|.+|.+..
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 68
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.69 E-value=2.8e+02 Score=27.49 Aligned_cols=12 Identities=42% Similarity=0.351 Sum_probs=7.5
Q ss_pred HHHHHhhhcccc
Q 018107 226 KEFEDMINRKRR 237 (360)
Q Consensus 226 k~l~~~~~kKRr 237 (360)
+.||..|..+||
T Consensus 151 qRLE~~Id~c~~ 162 (390)
T 1deq_A 151 KRLEVDIDIKIR 162 (390)
T ss_pred HHHHHHHHHHhc
Confidence 346767766665
No 69
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.61 E-value=51 Score=25.04 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLRHQQQNTREYL 184 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQqqq~~~~~l 184 (360)
|..|+..++.|..|+..|+++......++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665554433333
No 70
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.55 E-value=1.1e+02 Score=29.53 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018107 166 LMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQ 199 (360)
Q Consensus 166 L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQq 199 (360)
|..|+.+|.....+...+++.|+..|..++.+.+
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~ 43 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVT 43 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555544444333
No 71
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=31.38 E-value=1.7e+02 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018107 161 RDKQVLMMELVKLRHQQQ 178 (360)
Q Consensus 161 rd~~~L~~Ev~kLRQqqq 178 (360)
++...|..|...|.++.+
T Consensus 6 k~i~~l~~E~eel~~klk 23 (71)
T 1s1c_X 6 KDIEILRRENEELTEKMK 23 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444433333
No 72
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=31.35 E-value=84 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREYLQL 186 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~ 186 (360)
-|..|+..+..|..|+..|+++++....+++.
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666555554443
No 73
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=31.31 E-value=80 Score=22.57 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 018107 179 NTREYLQLMEQKLRRTEMKQQHMMSFLARAM 209 (360)
Q Consensus 179 ~~~~~l~~me~RL~~~E~kQqQmm~FLak~~ 209 (360)
++...+..+|+.+..|++|-.+|+..+..++
T Consensus 14 S~~~Rl~rVE~qV~~md~KLd~l~~~~~~~l 44 (49)
T 3bj4_A 14 TIGARLNRVEDKVTQLDQRLALITDMLHQLL 44 (49)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777778888888777776666544
No 74
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.65 E-value=1.7e+02 Score=28.93 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018107 166 LMMELVKLRHQQQNTREYLQLMEQKLRRTE 195 (360)
Q Consensus 166 L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E 195 (360)
|...+..++++.+.+..+++.++++|...+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 44 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSN 44 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444455555444433
No 75
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.21 E-value=57 Score=20.25 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018107 156 VDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 156 i~~LKrd~~~L~~Ev~kLRQ 175 (360)
|.+||+.+..|.+|+..|.-
T Consensus 2 irrlkqknarlkqeiaaley 21 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEY 21 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHH
Confidence 34566666666666666543
No 76
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.14 E-value=55 Score=24.85 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYL 184 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l 184 (360)
.|+.++..|...++.|..|...||++...+..++
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777776665544444
No 77
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.83 E-value=49 Score=25.62 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=19.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQ 178 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq 178 (360)
.+...+..|..+|..|..+|..|+.+..
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777766553
No 78
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=29.25 E-value=40 Score=30.44 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=47.9
Q ss_pred CCchHHH-HHHhccCCCCCCeEEEcCCCCeEEE-eCCcchhhhh-ccCccCCCChhhHHh-----hhcccCcc
Q 018107 37 PPPFLTK-TYDIVEDCNTNHIISWSRGSNSFVV-WDPQAFSITL-LPKYFKHNNFSSFVR-----QLNTYGFR 101 (360)
Q Consensus 37 ~p~Fl~K-L~~mv~dp~~~~iIsWs~~G~sFiI-~d~~~F~~~v-LP~yFkh~nfsSFvR-----QLN~YGFr 101 (360)
...|+.| +|.++=.-.. +...|+++++.|+| .|..-+...| +|.-.+.-+|++|+. -|.+-||.
T Consensus 83 ~l~fI~k~~Wk~lFgk~a-d~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 83 TADVIAKVAFKMYLGITP-SITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHHHTHHHHHHSCCC-EEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 3567754 6888866543 58899999999999 7777665544 677667788999984 47888887
No 79
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.65 E-value=38 Score=24.31 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=18.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQ 176 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQq 176 (360)
.|+.++..|..+|..|..++..|++.
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777776654
No 80
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=27.36 E-value=1.5e+02 Score=22.02 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018107 163 KQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFL 205 (360)
Q Consensus 163 ~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FL 205 (360)
...|..++.++.+.| +.+++.|..++..|..+=.+|
T Consensus 14 I~~L~~~v~~~e~~Q-------~~ldq~Ld~Ie~QQ~ELe~~L 49 (64)
T 3t97_C 14 ITSLHREVEKVKLDQ-------KRLDQELDFILSQQKELEDLL 49 (64)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 345666676666655 345566666666666654444
No 81
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.03 E-value=2.6e+02 Score=22.87 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018107 166 LMMELVKLRHQQQNTREYLQLMEQKLRRTEMK 197 (360)
Q Consensus 166 L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~k 197 (360)
|.+|+...+++......+++.+...+..+|+.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444445555443
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.97 E-value=1.3e+02 Score=31.11 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhHHhhHHHHHhh
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYLQ-LMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMI 232 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~-~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~~~~k~l~~~~ 232 (360)
.+++..-+..-..|++-++...+..+...++. .|+.|+.+++.+-+.-+ -..+||| .-|..++....+ ||-.|
T Consensus 81 Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQ--snLedq~~kIQR---LEvDI 154 (562)
T 3ghg_A 81 KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQ--KNVRAQLVDMKR---LEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHH---HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHH---HHHHH
Q ss_pred hcccc
Q 018107 233 NRKRR 237 (360)
Q Consensus 233 ~kKRr 237 (360)
..|+|
T Consensus 155 diqir 159 (562)
T 3ghg_A 155 DIKIR 159 (562)
T ss_dssp HHHHH
T ss_pred HHHHH
No 83
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.34 E-value=1e+02 Score=25.82 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018107 163 KQVLMMELVKLRHQQQNTREYLQ 185 (360)
Q Consensus 163 ~~~L~~Ev~kLRQqqq~~~~~l~ 185 (360)
.+.|.-||..|.|+.++....+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666655555554443
No 84
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.10 E-value=2e+02 Score=26.03 Aligned_cols=21 Identities=0% Similarity=0.121 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 018107 183 YLQLMEQKLRRTEMKQQHMMS 203 (360)
Q Consensus 183 ~l~~me~RL~~~E~kQqQmm~ 203 (360)
++..++.|+...|.....+|.
T Consensus 98 Eie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 85
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=25.18 E-value=82 Score=19.97 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 018107 173 LRHQQQNTREYLQLMEQKLRRTE 195 (360)
Q Consensus 173 LRQqqq~~~~~l~~me~RL~~~E 195 (360)
|..+.-.....+++++.+|.+.|
T Consensus 6 lekkcaalesklqalekkleale 28 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666665554
No 86
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.59 E-value=95 Score=20.57 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
++..++.|-..+..|-.||.+|+.
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567788888888888888888864
No 87
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.32 E-value=95 Score=23.77 Aligned_cols=29 Identities=10% Similarity=0.313 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQNTREY 183 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~ 183 (360)
-|..|+.+...|..|+..|+.++.....+
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777776666665444433
No 88
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.71 E-value=2.6e+02 Score=21.78 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=15.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQ 185 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~ 185 (360)
|+..|..+=.....|..||..|+++......+.+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~ 44 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555554444333333
No 89
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=23.71 E-value=1e+02 Score=25.58 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=3.0
Q ss_pred cHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQV 165 (360)
Q Consensus 152 L~~ei~~LKrd~~~ 165 (360)
|.++++.||+|.+.
T Consensus 4 l~~~~~~l~~~~~~ 17 (182)
T 3kqg_A 4 LNAQIPELKSDLEK 17 (182)
T ss_dssp ---------CHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 55677777776653
No 90
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.65 E-value=2.2e+02 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQ---QQNTREYLQLMEQKLRRTEMK 197 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQq---qq~~~~~l~~me~RL~~~E~k 197 (360)
.+..+++.|+.+++.+-++|.+++.. ......++..+.+++..+|.+
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE 91 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666554321 122333444444444444433
No 91
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.14 E-value=2.8e+02 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 153 DGEVDRLRRDKQVLMMELVKLRHQ 176 (360)
Q Consensus 153 ~~ei~~LKrd~~~L~~Ev~kLRQq 176 (360)
-.++..|.++...|-.||..++.+
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455555555555555444443
No 92
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.12 E-value=2.5e+02 Score=21.88 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
..+.-+..|....+.|-.++.+|..+...+...+..++..|+.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777766666666655555543
No 93
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.95 E-value=2.3e+02 Score=28.73 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQ---QNTREYLQLMEQKLRRTEMKQQH 200 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqq---q~~~~~l~~me~RL~~~E~kQqQ 200 (360)
.+..+++.|+.+++.+-++|..++..- +....++..+.++|..+|.+..+
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~ 96 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAE 96 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777776666554321 23334444555555554444333
No 94
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.38 E-value=2e+02 Score=19.84 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhHH
Q 018107 182 EYLQLMEQKLRRTEM 196 (360)
Q Consensus 182 ~~l~~me~RL~~~E~ 196 (360)
.++++++.+|.....
T Consensus 27 selqalekklaalks 41 (48)
T 1g6u_A 27 SELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 95
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.12 E-value=3.3e+02 Score=22.34 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018107 163 KQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLA 206 (360)
Q Consensus 163 ~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLa 206 (360)
...|..||..||.....+..++..+|+.-...|..-.-..+-|.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 45577888888888888888888888888888877666655555
No 96
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.54 E-value=2.5e+02 Score=27.61 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018107 162 DKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196 (360)
Q Consensus 162 d~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~ 196 (360)
+...|-.|+..++++....+.+++.+...+..++.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777666666666666655543
No 97
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.30 E-value=1.7e+02 Score=23.66 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQQQNTREYL 184 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l 184 (360)
.+++.|++....|-.|..+||++....+.+|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788877777777777777664444433
No 98
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.30 E-value=3.7e+02 Score=27.26 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLR 174 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLR 174 (360)
+..+++.|+.+++.+-++|..++
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555443
No 99
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.15 E-value=4.1e+02 Score=23.04 Aligned_cols=63 Identities=10% Similarity=0.124 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CChHHHHHHHhHH
Q 018107 154 GEVDRLRRDKQVLMMELVKLRHQ-------QQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQ-NPSFVQQLAQQKD 223 (360)
Q Consensus 154 ~ei~~LKrd~~~L~~Ev~kLRQq-------qq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~q-np~Fl~qLvqq~~ 223 (360)
..|..|+.+...|..++..+... .+..+..+.++.-++..+|.+-+.+ -. |...+.+++.++.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL-------q~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL-------KKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 45566666666666666666543 3444555555555555555544433 33 4456667766544
No 100
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.51 E-value=3.1e+02 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKL 191 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL 191 (360)
|..|+..|..+.+..-.|+..|+.+.+..+.++.....++
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4455555555555555566666555555555555444433
No 101
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.10 E-value=2.3e+02 Score=19.80 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018107 152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196 (360)
Q Consensus 152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~ 196 (360)
++..+++|..-.+.|..-+++|--++..++. .|.+||..+|.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~---KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQM---KMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 5667777777777777777777666654443 34466666664
No 102
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.09 E-value=2.6e+02 Score=21.45 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~ 193 (360)
..+.-+..|....+.+-.++.+|..+...++..+..++..|+.
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777778888888888877777777777766665543
Done!