Query 018107
Match_columns 360
No_of_seqs 286 out of 1042
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 10:03:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018107.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018107hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hksa_ a.4.5.22 (A:) Heat-sho 100.0 5.2E-37 3.8E-41 253.7 7.2 95 35-129 2-106 (106)
2 d2htsa_ a.4.5.22 (A:) Heat-sho 100.0 4.7E-31 3.4E-35 213.5 3.4 78 37-114 2-90 (92)
3 d1pp7u_ a.4.5.44 (U:) 39 kda i 92.8 0.017 1.2E-06 46.6 1.6 75 37-119 27-110 (114)
4 d1gvja_ a.4.5.21 (A:) ETS-1 tr 92.7 0.0041 3E-07 52.1 -2.4 82 29-110 31-117 (142)
5 d1flia_ a.4.5.21 (A:) Fli-1 {H 91.4 0.031 2.2E-06 43.9 1.6 62 38-99 6-68 (98)
6 d1awca_ a.4.5.21 (A:) GA bindi 91.3 0.041 3E-06 44.0 2.2 56 44-99 7-63 (110)
7 d1duxc_ a.4.5.21 (C:) Elk-1 {H 89.7 0.034 2.4E-06 42.7 0.3 56 44-99 7-64 (86)
8 d1hbxg_ a.4.5.21 (G:) Serum re 86.5 0.065 4.7E-06 45.1 0.1 68 44-111 10-82 (155)
9 d1puee_ a.4.5.21 (E:) Transcri 83.8 0.089 6.5E-06 40.4 -0.3 55 44-98 8-67 (88)
10 d1wwxa1 a.4.5.21 (A:8-101) E74 78.8 0.32 2.3E-05 37.6 1.3 56 44-99 8-66 (94)
11 d1yo5c1 a.4.5.21 (C:247-334) S 78.2 0.2 1.5E-05 38.3 -0.0 58 44-101 9-69 (88)
12 d1seta1 a.2.7.1 (A:1-110) Sery 46.0 40 0.0029 24.9 7.8 50 151-200 39-89 (110)
13 d1wc9a_ d.278.1.2 (A:) Traffic 45.5 11 0.00081 30.7 4.7 64 38-102 64-135 (161)
14 d1lrza1 a.2.7.4 (A:245-309) Me 40.1 54 0.0039 22.8 7.6 21 155-175 4-24 (65)
15 d1zyma1 a.60.10.1 (A:22-144) E 38.2 64 0.0047 24.2 8.1 51 172-222 21-72 (123)
16 d1nkpa_ a.38.1.1 (A:) Myc prot 24.4 63 0.0046 22.8 5.4 24 155-178 53-76 (88)
17 d1jyaa_ d.198.1.1 (A:) YopE ch 22.5 23 0.0017 27.6 2.6 31 45-75 65-95 (117)
18 d1grja1 a.2.1.1 (A:2-79) GreA 20.9 1.3E+02 0.0098 21.2 6.9 46 151-196 12-66 (78)
No 1
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}
Probab=100.00 E-value=5.2e-37 Score=253.71 Aligned_cols=95 Identities=43% Similarity=0.825 Sum_probs=90.5
Q ss_pred CCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC----------
Q 018107 35 AGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD---------- 104 (360)
Q Consensus 35 ~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~---------- 104 (360)
+++|+||.|||+||+||++++||+|+++|++|+|+|+..|++.|||+||+|+||+||+||||+|||+|+.
T Consensus 2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~ 81 (106)
T d1hksa_ 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD 81 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred CCCceEecCCccccchhcccccccc
Q 018107 105 PDRWEFANEGFLRGQRHLLKNIRRR 129 (360)
Q Consensus 105 ~d~~eF~h~~F~Rg~~~LL~~IkRr 129 (360)
++.|+|+|++|+||+++||..|+||
T Consensus 82 ~~~~~f~h~~F~Rg~p~ll~~IkRr 106 (106)
T d1hksa_ 82 RDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCccEEECccccCCCHHHHhhCcCC
Confidence 4568999999999999999999986
No 2
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=99.96 E-value=4.7e-31 Score=213.53 Aligned_cols=78 Identities=49% Similarity=0.901 Sum_probs=73.9
Q ss_pred CCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC-----------C
Q 018107 37 PPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD-----------P 105 (360)
Q Consensus 37 ~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~-----------~ 105 (360)
.|+||.|||.||+||++++||+|+++|++|+|+|+..|++.|||+||+|+||+||+||||+|||+|+. +
T Consensus 2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~ 81 (92)
T d2htsa_ 2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND 81 (92)
T ss_dssp CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred CCceEecCC
Q 018107 106 DRWEFANEG 114 (360)
Q Consensus 106 d~~eF~h~~ 114 (360)
+.|||+|+.
T Consensus 82 ~~~eF~h~~ 90 (92)
T d2htsa_ 82 SRWEFENER 90 (92)
T ss_dssp CCEEEEESC
T ss_pred CCEEEecCC
Confidence 579999984
No 3
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
Probab=92.80 E-value=0.017 Score=46.55 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=54.1
Q ss_pred CCchHHHHHHhcc----CCCCCCe--EEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccCCC---C
Q 018107 37 PPPFLTKTYDIVE----DCNTNHI--ISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPD---R 107 (360)
Q Consensus 37 ~p~Fl~KL~~mv~----dp~~~~i--IsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~d---~ 107 (360)
...|+.|||.+|. +|.+... |.|.+++. |.| +...|+..+== +-.|.-.-|..|||.++.++ .
T Consensus 27 ~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~lLgi------K~ntlN~Nfr~~gF~q~~~d~~~~ 98 (114)
T d1pp7u_ 27 NSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVALVMGI------KLNTLNVNLRDLAFEQLQHDKGGW 98 (114)
T ss_dssp GGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHHHHTC------CHHHHHHHHHHTTCEEEEEEETTE
T ss_pred cCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHHHHCC------ChhhhcCcccccCceeeecCCCcc
Confidence 3679999999995 4433222 78999997 777 88889974421 23566777888999988643 3
Q ss_pred ceEecCCccccc
Q 018107 108 WEFANEGFLRGQ 119 (360)
Q Consensus 108 ~eF~h~~F~Rg~ 119 (360)
|.+.++.|.|.-
T Consensus 99 ~~w~~~~F~~nS 110 (114)
T d1pp7u_ 99 TQWKRSGFTRNS 110 (114)
T ss_dssp EEEECTTEETTE
T ss_pred eeeccCCccccc
Confidence 567889998764
No 4
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.65 E-value=0.0041 Score=52.07 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=57.1
Q ss_pred CCCCCCCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccCc----ccc
Q 018107 29 REGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYGF----RKV 103 (360)
Q Consensus 29 ~e~~~~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv 103 (360)
..|....+...--.=|.+||.|+++.++|+|...+-.|.+.|+++.++.--. +-=..-||..+-|-|..|-= +||
T Consensus 31 ~~~~~~~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv 110 (142)
T d1gvja_ 31 LAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKT 110 (142)
T ss_dssp HHHHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred ccCCCCCCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEec
Confidence 4444455556566667889999999999999988888999999998874321 11123578888888877632 344
Q ss_pred CCCCceE
Q 018107 104 DPDRWEF 110 (360)
Q Consensus 104 ~~d~~eF 110 (360)
...+..|
T Consensus 111 ~g~rl~Y 117 (142)
T d1gvja_ 111 AGKRYVY 117 (142)
T ss_dssp TTSSSEE
T ss_pred CCcEEEE
Confidence 4455555
No 5
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.45 E-value=0.031 Score=43.89 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=44.8
Q ss_pred CchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107 38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG 99 (360)
Q Consensus 38 p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG 99 (360)
..-..=|.+||.|+++.++|+|...+--|.+.|+++.++.--. +-=..-||...-|-|..|-
T Consensus 6 ~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY 68 (98)
T d1flia_ 6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence 3334456778999999999999887778999999988864322 1112237888888887763
No 6
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=91.25 E-value=0.041 Score=43.96 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=43.9
Q ss_pred HHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107 44 TYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG 99 (360)
Q Consensus 44 L~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG 99 (360)
|.++|.||++.++|+|...+.-|.+.|+++.++.--. +-=..-||...-|-|..|-
T Consensus 7 L~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY 63 (110)
T d1awca_ 7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY 63 (110)
T ss_dssp HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred HHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHH
Confidence 5778899999999999998889999999988864322 1123457888889998873
No 7
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.72 E-value=0.034 Score=42.69 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=41.9
Q ss_pred HHHhccCCCCCCeEEEcC-CCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107 44 TYDIVEDCNTNHIISWSR-GSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG 99 (360)
Q Consensus 44 L~~mv~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG 99 (360)
|.++|+|+++.++|+|.. ++.-|.+.|+++.++.--. +.=..-||..+-|-|..|-
T Consensus 7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY 64 (86)
T d1duxc_ 7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYY 64 (86)
T ss_dssp HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 456788999999999998 6788999999988874321 1112347888888887763
No 8
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.49 E-value=0.065 Score=45.14 Aligned_cols=68 Identities=16% Similarity=0.359 Sum_probs=51.0
Q ss_pred HHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC----ccccCCCCceEe
Q 018107 44 TYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG----FRKVDPDRWEFA 111 (360)
Q Consensus 44 L~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG----FrKv~~d~~eF~ 111 (360)
|.++|.||++.++|+|...+.-|.+.|+++.++..-. +.=..-||..+-|-|..|- .+||...+..|.
T Consensus 10 L~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk 82 (155)
T d1hbxg_ 10 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK 82 (155)
T ss_dssp TTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence 4678899999999999998889999999999875322 1113457888889888773 345566677775
No 9
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=83.79 E-value=0.089 Score=40.41 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=37.4
Q ss_pred HHHhccCCCCCCeEEEcCCCC-eEEEe--CCcchhhhhcc-C-ccCCCChhhHHhhhccc
Q 018107 44 TYDIVEDCNTNHIISWSRGSN-SFVVW--DPQAFSITLLP-K-YFKHNNFSSFVRQLNTY 98 (360)
Q Consensus 44 L~~mv~dp~~~~iIsWs~~G~-sFiI~--d~~~F~~~vLP-~-yFkh~nfsSFvRQLN~Y 98 (360)
|.++|.||++.++|+|...+. .|-+. ++++.++.--- + .=..=||..+-|-|..|
T Consensus 8 L~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyY 67 (88)
T d1puee_ 8 LLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY 67 (88)
T ss_dssp HHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Confidence 567889999999999987664 46655 46667653220 1 11234888888988876
No 10
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.83 E-value=0.32 Score=37.58 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=39.2
Q ss_pred HHHhccCCC-CCCeEEEcCCC-CeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107 44 TYDIVEDCN-TNHIISWSRGS-NSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG 99 (360)
Q Consensus 44 L~~mv~dp~-~~~iIsWs~~G-~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG 99 (360)
|.++|.||+ +.++|+|..-+ .-|.+.|+++.++.--- +-=..=||..+-|-|..|-
T Consensus 8 L~~LL~d~~~~~~~I~Wt~k~~g~Fkl~d~~~VA~lWG~~K~~~~M~YeklSRaLRyYY 66 (94)
T d1wwxa1 8 VRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY 66 (94)
T ss_dssp HHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCccCCCeEEEEcCCCcEEEEcCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH
Confidence 567888875 46799999854 47999999988864211 1112357888888888773
No 11
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.17 E-value=0.2 Score=38.31 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=42.1
Q ss_pred HHHhccCCC-CCCeEEEcCCCC-eEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccCcc
Q 018107 44 TYDIVEDCN-TNHIISWSRGSN-SFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYGFR 101 (360)
Q Consensus 44 L~~mv~dp~-~~~iIsWs~~G~-sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGFr 101 (360)
|.++|.||+ +.++|+|...+. -|.+.|+++.++.--. +-=..-||..+-|-|..|--+
T Consensus 9 L~~LL~d~~~~~~~I~Wt~~~~g~Fkl~~~~~VA~lWG~~Knk~~M~YeklSRALRyYY~~ 69 (88)
T d1yo5c1 9 LKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 69 (88)
T ss_dssp HHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHcCccccCCCeEEECCCCceEEecCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Confidence 567788874 578999987665 6999999998874322 111345789999999888643
No 12
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=46.01 E-value=40 Score=24.90 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHH
Q 018107 151 GLDGEVDRLRRDKQVLMMELVKLRH-QQQNTREYLQLMEQKLRRTEMKQQH 200 (360)
Q Consensus 151 ~L~~ei~~LKrd~~~L~~Ev~kLRQ-qqq~~~~~l~~me~RL~~~E~kQqQ 200 (360)
.+..+++.|+.++..+-.+|.+... .......++..+...+..+|.+.+.
T Consensus 39 ~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~ 89 (110)
T d1seta1 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALRE 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777666666644321 1122333444444444444444433
No 13
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.48 E-value=11 Score=30.68 Aligned_cols=64 Identities=14% Similarity=0.280 Sum_probs=46.4
Q ss_pred CchHHH-HHHhccCCCCCCeEEEcCCCCeEEEe-CCcchhhhh-ccCccCCCChhhHHh-----hhcccCccc
Q 018107 38 PPFLTK-TYDIVEDCNTNHIISWSRGSNSFVVW-DPQAFSITL-LPKYFKHNNFSSFVR-----QLNTYGFRK 102 (360)
Q Consensus 38 p~Fl~K-L~~mv~dp~~~~iIsWs~~G~sFiI~-d~~~F~~~v-LP~yFkh~nfsSFvR-----QLN~YGFrK 102 (360)
..|+.| .|.++=.-. .+.+.|+.+|+.|++. +..-|...| +|.-...-+|++|+. -|++-||..
T Consensus 64 l~fI~~~~wk~~fgk~-~d~l~~~~~~~~~~~i~~~npl~~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~ 135 (161)
T d1wc9a_ 64 ADVIAKVAFKMYLGIT-PSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAV 135 (161)
T ss_dssp HHHHHHTHHHHHHSCC-CEEECCCTTSCEEEEEESCCGGGTTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHHHcCCC-cccceecCCCCeEEEEecCCCccceEEcCcccCCceehhhHHHHHHHHHHHCCCeE
Confidence 457877 799987754 4588999999977665 444455544 687777788999984 478888853
No 14
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=40.12 E-value=54 Score=22.76 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRH 175 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQ 175 (360)
=+..|+.+...|-.+|.++..
T Consensus 4 Yl~~L~~~~~~L~~~i~k~~~ 24 (65)
T d1lrza1 4 YIKELNEERDILNKDLNKALK 24 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777755
No 15
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]}
Probab=38.23 E-value=64 Score=24.16 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhcCChHHHHHHHhH
Q 018107 172 KLRHQQQNTREYLQLMEQKLRRTE-MKQQHMMSFLARAMQNPSFVQQLAQQK 222 (360)
Q Consensus 172 kLRQqqq~~~~~l~~me~RL~~~E-~kQqQmm~FLak~~qnp~Fl~qLvqq~ 222 (360)
++++-...+..+|..+.+++...- .....|+..-.-+++||.|+......-
T Consensus 21 rl~~A~~~~~~~L~~l~~~~~~~~~~e~a~If~ah~~iL~D~~l~~~v~~~I 72 (123)
T d1zyma1 21 RFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALI 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 333333334444444444443322 223568888888999999988776643
No 16
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.40 E-value=63 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018107 155 EVDRLRRDKQVLMMELVKLRHQQQ 178 (360)
Q Consensus 155 ei~~LKrd~~~L~~Ev~kLRQqqq 178 (360)
-|..|+.+...|..|+..|+++..
T Consensus 53 yI~~L~~~~~~l~~~~~~l~~~~~ 76 (88)
T d1nkpa_ 53 YILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555443
No 17
>d1jyaa_ d.198.1.1 (A:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
Probab=22.54 E-value=23 Score=27.65 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=25.7
Q ss_pred HHhccCCCCCCeEEEcCCCCeEEEeCCcchh
Q 018107 45 YDIVEDCNTNHIISWSRGSNSFVVWDPQAFS 75 (360)
Q Consensus 45 ~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~ 75 (360)
.+|..+.....++.|++++..||+|+.....
T Consensus 65 qN~FSqd~~kPvl~~d~~~~~~vLWnRqp~~ 95 (117)
T d1jyaa_ 65 HNIFSQDILKPILSWDEVGGHPVLWNRQPLN 95 (117)
T ss_dssp GGSCCSCTTCCEEEEETTTTEEEEEEEEEGG
T ss_pred hhhccccccCcceeeCcCCCceeEEecCchh
Confidence 4666777788999999999999999986543
No 18
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.91 E-value=1.3e+02 Score=21.17 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=27.5
Q ss_pred CcHHHHHHHHH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhHH
Q 018107 151 GLDGEVDRLRR-DKQVLMMELVKLRH--------QQQNTREYLQLMEQKLRRTEM 196 (360)
Q Consensus 151 ~L~~ei~~LKr-d~~~L~~Ev~kLRQ--------qqq~~~~~l~~me~RL~~~E~ 196 (360)
.|..+++.|+. ..-.+..+|...|. +++..+..+..++.|+..+|.
T Consensus 12 ~L~~EL~~L~~~~rpei~~~I~~Ar~~GDlsENaeY~aAKe~q~~~e~RI~eLe~ 66 (78)
T d1grja1 12 KLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEA 66 (78)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777665 44555556655554 555666666666666666554
Done!