BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018109
         (360 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase
 pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase
 pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase
 pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase
 pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase In Complex With Atp
 pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase In Complex With Atp
 pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase In Complex With Atp
 pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase In Complex With Atp
 pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
           Pyrophosphorylase In Complex With Adp-glucose
 pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
           Pyrophosphorylase In Complex With Adp-glucose
 pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
           Pyrophosphorylase In Complex With Adp-glucose
 pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
           Pyrophosphorylase In Complex With Adp-glucose
          Length = 451

 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/361 (51%), Positives = 257/361 (71%), Gaps = 7/361 (1%)

Query: 2   FQLTGNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM 61
           ++  G  +VLAA Q+P      WFQGTADAVRQ+ WLFE+     + + LIL+GDHLYRM
Sbjct: 96  YKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRM 150

Query: 62  DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVD 121
           DY  F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR++ F+EKP+G+ L+AM VD
Sbjct: 151 DYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVD 210

Query: 122 TTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIP-ASANEQFLK 180
           TT+LGL  + A+E P+IASMG+Y+  K+++LNLLR +FP ANDFGSE+IP A++    ++
Sbjct: 211 TTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQ 270

Query: 181 AYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPXXXXXXXXXX 239
           AYL++ YWEDIGTI +F+ ANL +T  P P FSFYD + PIYT  R LPP          
Sbjct: 271 AYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD 330

Query: 240 XXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 299
                G  I +  I HSVVG+RS I+    ++D++++GAD+YETDA+   L A+G VP+G
Sbjct: 331 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIG 390

Query: 300 IGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359
           IG+N  IK  IIDKNARIG NV I N + +QEA R  +G++I+SG+  ++K+++I  G +
Sbjct: 391 IGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGII 450

Query: 360 I 360
           I
Sbjct: 451 I 451


>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
           Agrobacterium Tumefaciens
          Length = 420

 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 115/234 (49%), Gaps = 33/234 (14%)

Query: 10  VLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN 69
           +L A+Q   E   +W++GTADAV Q   + E       E  +IL+GDH+Y+ DY   +Q 
Sbjct: 94  ILPASQRVSET--QWYEGTADAVYQNIDIIE---PYAPEYXVILAGDHIYKXDYEYXLQQ 148

Query: 70  HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSK 129
           H  SGAD+TI CL +    A+ FG+  +N +  ++ F EKP               G+  
Sbjct: 149 HVDSGADVTIGCLEVPRXEATGFGVXHVNEKDEIIDFIEKPADPP-----------GIPG 197

Query: 130 QEAEEKPYIASMGVYLFKKEILLNLLRWRF--PTAN-DFGSEIIPASANEQFLKAYLFND 186
            E      +AS G+Y+F  + L   +R     PT++ DFG +IIP         A+ F D
Sbjct: 198 NEGFA---LASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFAD 254

Query: 187 -----------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 229
                      YW D+GTI ++++AN+ LT   P    YD + PI+T     PP
Sbjct: 255 SCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPP 308


>pdb|2FQH|A Chain A, Nmr Structure Of Hypothetical Protein Ta0938 From
           Termoplasma Acidophilum
          Length = 109

 Score = 30.4 bits (67), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 306 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITD 356
           + E  ID N ++G+NV++ N E     DR    FY++ G   ++K   ITD
Sbjct: 66  VDELHIDGNYQLGRNVLLKNGE-----DRLR--FYVKFGPGAVIKEFKITD 109


>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
           N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
           Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
 pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
           N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
           Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
 pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
           N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
           Bound To Acetyl Coenzyme A
 pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
           N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
           Bound To Acetyl Coenzyme A
 pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
           1-Phosphate Uridyltransferase, Glmu
 pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
           1-Phosphate Uridyltransferase, Glmu
          Length = 468

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 15/91 (16%)

Query: 245 GSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVASLLAEGRVPVGIGEN 303
           G+ IT+S IE S V     +    H++    LGA  +  +  EV            IGEN
Sbjct: 315 GAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKG--------SSIGEN 366

Query: 304 TK------IKECIIDKNARIGKNVIIANSEG 328
           TK      I  C +  N   G   I  N +G
Sbjct: 367 TKAGHLTYIGNCEVGSNVNFGAGTITVNYDG 397


>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
           Inhibitor
 pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
           Inhibitor
          Length = 459

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 15/91 (16%)

Query: 245 GSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVASLLAEGRVPVGIGEN 303
           G+ IT+S IE S V     +    H++    LGA  +  +  EV            IGEN
Sbjct: 306 GAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKG--------SSIGEN 357

Query: 304 TK------IKECIIDKNARIGKNVIIANSEG 328
           TK      I  C +  N   G   I  N +G
Sbjct: 358 TKAGHLTYIGNCEVGSNVNFGAGTITVNYDG 388


>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
           In Alphab- Crystallin Oligomers
 pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
           In Alphab- Crystallin Oligomers
 pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
          Length = 175

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 36  HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 93
           H+  E+ + KV+ DV+ + G H  R D   F+    HR+      +  L +  S +SD G
Sbjct: 83  HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD-G 141

Query: 94  LMKINNEGRVLSFSEK 109
           ++ +N   + +S  E+
Sbjct: 142 VLTVNGPRKQVSGPER 157


>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|B Chain B, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|C Chain C, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|D Chain D, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|E Chain E, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|F Chain F, Human Alphab-Crystallin Domain (Residues 67-157)
          Length = 94

 Score = 28.9 bits (63), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 36  HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 93
           H+  E+ + KV+ DV+ + G H  R D   F+    HR+      +  L +  S +SD G
Sbjct: 20  HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSD-G 78

Query: 94  LMKINNEGRVLSFSEK 109
           ++ +N   + +S  E+
Sbjct: 79  VLTVNGPRKQVSGPER 94


>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157)
          Length = 90

 Score = 28.9 bits (63), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 36  HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 93
           H+  E+ + KV+ DV+ + G H  R D   F+    HR+      +  L +  S +SD G
Sbjct: 16  HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSD-G 74

Query: 94  LMKINNEGRVLSFSEK 109
           ++ +N   + +S  E+
Sbjct: 75  VLTVNGPRKQVSGPER 90


>pdb|3L1G|A Chain A, Human Alphab Crystallin
          Length = 96

 Score = 28.5 bits (62), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 36  HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 93
           H+  E+ + KV+ DV+ + G H  R D   F+    HR+      +  L +  S +SD G
Sbjct: 17  HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD-G 75

Query: 94  LMKINNEGRVLSFSEK 109
           ++ +N   + +S  E+
Sbjct: 76  VLTVNGPRKQVSGPER 91


>pdb|2WJ7|A Chain A, Human Alphab Crystallin
 pdb|2WJ7|B Chain B, Human Alphab Crystallin
 pdb|2WJ7|C Chain C, Human Alphab Crystallin
 pdb|2WJ7|D Chain D, Human Alphab Crystallin
 pdb|2WJ7|E Chain E, Human Alphab Crystallin
          Length = 94

 Score = 28.5 bits (62), Expect = 6.8,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 36  HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 93
           H+  E+ + KV+ DV+ + G H  R D   F+    HR+      +  L +  S +SD G
Sbjct: 20  HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD-G 78

Query: 94  LMKINNEGRVLSFSEK 109
           ++ +N   + +S  E+
Sbjct: 79  VLTVNGPRKQVSGPER 94


>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
 pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
           And Mg2+
          Length = 459

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 15/91 (16%)

Query: 245 GSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVASLLAEGRVPVGIGEN 303
           G+ IT+S IE S V     +    H++    LGA  +  +  EV            IGEN
Sbjct: 306 GAVITNSMIEESSVADGVIVGPYAHIRPNSSLGAQVHIGNFVEVKG--------SSIGEN 357

Query: 304 TK------IKECIIDKNARIGKNVIIANSEG 328
           TK      I  C +  N   G   I  N +G
Sbjct: 358 TKAGHLTYIGNCEVGSNVNFGAGTITVNYDG 388


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,946,249
Number of Sequences: 62578
Number of extensions: 398872
Number of successful extensions: 950
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 12
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)