Query 018109
Match_columns 360
No_of_seqs 175 out of 2272
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:13:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 2.1E-49 4.6E-54 373.7 31.8 309 3-359 80-392 (393)
2 PLN02241 glucose-1-phosphate a 100.0 1.3E-45 2.7E-50 366.5 37.5 337 24-360 99-436 (436)
3 PRK02862 glgC glucose-1-phosph 100.0 8E-45 1.7E-49 359.9 33.9 332 25-360 97-429 (429)
4 KOG1322 GDP-mannose pyrophosph 100.0 6.2E-43 1.3E-47 319.1 24.5 292 5-354 53-370 (371)
5 COG1207 GlmU N-acetylglucosami 100.0 4E-40 8.7E-45 310.8 22.1 325 6-360 44-430 (460)
6 PRK05293 glgC glucose-1-phosph 100.0 5.6E-39 1.2E-43 313.9 29.6 278 24-360 97-379 (380)
7 PRK00844 glgC glucose-1-phosph 100.0 3.6E-38 7.8E-43 310.7 30.8 290 24-354 97-407 (407)
8 PRK00725 glgC glucose-1-phosph 100.0 1.1E-37 2.5E-42 308.4 30.3 292 23-355 108-420 (425)
9 COG1208 GCD1 Nucleoside-diphos 100.0 1.3E-36 2.8E-41 293.7 26.9 289 3-359 43-356 (358)
10 TIGR02091 glgC glucose-1-phosp 100.0 5.4E-35 1.2E-39 283.9 29.4 266 24-325 91-361 (361)
11 TIGR02092 glgD glucose-1-phosp 100.0 4.6E-34 9.9E-39 278.2 28.4 280 3-326 45-356 (369)
12 PRK14355 glmU bifunctional N-a 100.0 7.8E-33 1.7E-37 277.0 26.2 333 4-360 43-430 (459)
13 PRK14352 glmU bifunctional N-a 100.0 2.3E-32 5E-37 275.1 26.0 331 5-360 45-432 (482)
14 PRK14358 glmU bifunctional N-a 100.0 2.1E-32 4.5E-37 275.0 22.1 329 4-360 47-432 (481)
15 TIGR01208 rmlA_long glucose-1- 100.0 3.4E-31 7.3E-36 256.6 26.4 230 5-270 43-297 (353)
16 PRK09451 glmU bifunctional N-a 100.0 1.6E-31 3.4E-36 267.4 21.8 326 5-360 46-427 (456)
17 TIGR01173 glmU UDP-N-acetylglu 100.0 4.6E-31 1E-35 263.4 23.2 328 4-360 40-423 (451)
18 PRK14359 glmU bifunctional N-a 100.0 7E-30 1.5E-34 253.5 26.5 297 25-360 79-400 (430)
19 PRK14357 glmU bifunctional N-a 100.0 8.3E-30 1.8E-34 254.4 26.2 305 24-360 71-416 (448)
20 PRK14356 glmU bifunctional N-a 100.0 7.5E-30 1.6E-34 255.2 23.7 330 5-360 46-431 (456)
21 KOG1460 GDP-mannose pyrophosph 100.0 3.5E-30 7.5E-35 232.2 14.8 272 3-328 47-360 (407)
22 PRK14354 glmU bifunctional N-a 100.0 7.3E-29 1.6E-33 248.2 24.8 331 4-360 42-426 (458)
23 PRK14353 glmU bifunctional N-a 100.0 1.5E-28 3.2E-33 245.2 25.7 325 4-360 45-413 (446)
24 PRK14360 glmU bifunctional N-a 100.0 6E-28 1.3E-32 241.1 24.4 329 5-360 42-423 (450)
25 KOG1462 Translation initiation 99.9 8.5E-27 1.8E-31 217.3 19.0 259 26-326 97-403 (433)
26 KOG1461 Translation initiation 99.9 2.4E-26 5.1E-31 225.6 20.7 310 4-340 67-416 (673)
27 cd06428 M1P_guanylylT_A_like_N 99.9 2.1E-23 4.6E-28 193.4 14.9 175 5-204 45-257 (257)
28 COG1209 RfbA dTDP-glucose pyro 99.9 1.2E-22 2.6E-27 183.0 14.4 172 4-207 43-238 (286)
29 cd06425 M1P_guanylylT_B_like_N 99.9 2.5E-22 5.4E-27 183.4 15.4 170 5-205 44-233 (233)
30 COG1043 LpxA Acyl-[acyl carrie 99.9 1.2E-22 2.6E-27 179.0 10.3 148 209-360 7-175 (260)
31 PF00483 NTP_transferase: Nucl 99.9 7.2E-22 1.6E-26 181.6 13.2 157 26-206 84-247 (248)
32 TIGR02623 G1P_cyt_trans glucos 99.9 2.2E-21 4.9E-26 179.6 15.8 147 25-208 102-248 (254)
33 TIGR01105 galF UTP-glucose-1-p 99.9 2.5E-21 5.4E-26 182.7 16.1 156 22-205 104-277 (297)
34 PRK10122 GalU regulator GalF; 99.9 1.1E-20 2.4E-25 178.5 16.2 156 25-207 107-280 (297)
35 PRK13389 UTP--glucose-1-phosph 99.8 2.9E-20 6.2E-25 176.1 15.6 153 24-205 111-280 (302)
36 cd02524 G1P_cytidylyltransfera 99.8 9.8E-20 2.1E-24 168.5 16.3 148 26-208 102-249 (253)
37 cd02541 UGPase_prokaryotic Pro 99.8 3.4E-19 7.4E-24 166.0 16.1 156 24-205 102-265 (267)
38 cd02538 G1P_TT_short G1P_TT_sh 99.8 4.1E-19 8.8E-24 162.9 16.3 151 25-205 83-238 (240)
39 TIGR01099 galU UTP-glucose-1-p 99.8 3.8E-19 8.3E-24 165.0 14.2 151 24-200 102-260 (260)
40 PRK15480 glucose-1-phosphate t 99.8 1.7E-18 3.7E-23 163.0 17.6 150 25-205 86-241 (292)
41 TIGR01207 rmlA glucose-1-phosp 99.8 1.3E-18 2.7E-23 163.6 16.1 151 25-205 82-237 (286)
42 cd04189 G1P_TT_long G1P_TT_lon 99.8 3.7E-18 8E-23 155.9 15.9 170 5-206 44-235 (236)
43 cd06422 NTP_transferase_like_1 99.8 1.2E-18 2.5E-23 157.8 12.1 160 4-200 42-221 (221)
44 cd06915 NTP_transferase_WcbM_l 99.8 6.2E-18 1.4E-22 152.5 13.6 163 5-200 42-222 (223)
45 cd04181 NTP_transferase NTP_tr 99.8 1.3E-17 2.9E-22 149.8 14.0 138 25-192 80-217 (217)
46 PRK05289 UDP-N-acetylglucosami 99.7 9E-18 2E-22 156.0 11.2 147 210-360 7-174 (262)
47 PRK12461 UDP-N-acetylglucosami 99.7 1.3E-17 2.9E-22 153.8 12.1 145 211-360 5-170 (255)
48 cd06426 NTP_transferase_like_2 99.7 6.7E-17 1.5E-21 145.9 14.5 160 5-201 42-220 (220)
49 COG1210 GalU UDP-glucose pyrop 99.7 1.1E-16 2.4E-21 144.7 14.0 155 25-208 107-273 (291)
50 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.7 4.7E-16 1E-20 144.0 12.3 146 211-360 5-171 (254)
51 TIGR01852 lipid_A_lpxA acyl-[a 99.6 3.6E-15 7.7E-20 138.1 12.2 146 211-360 4-170 (254)
52 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 7.1E-15 1.5E-19 133.8 11.5 131 167-325 31-177 (231)
53 cd04183 GT2_BcE_like GT2_BcbE_ 99.6 2.6E-14 5.7E-19 130.1 14.8 143 24-197 80-230 (231)
54 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 3.6E-14 7.8E-19 125.9 12.4 145 213-360 23-177 (193)
55 cd04197 eIF-2B_epsilon_N The N 99.6 9.2E-15 2E-19 132.1 8.4 139 5-151 44-217 (217)
56 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 5.7E-14 1.2E-18 134.1 13.9 63 298-360 218-286 (324)
57 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 9.5E-14 2.1E-18 134.1 13.5 119 239-360 148-294 (343)
58 cd05636 LbH_G1P_TT_C_like Puta 99.5 1.1E-13 2.5E-18 119.4 12.5 127 215-360 9-162 (163)
59 cd02523 PC_cytidylyltransferas 99.5 4.3E-14 9.2E-19 128.6 10.3 164 5-200 42-228 (229)
60 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 7.8E-14 1.7E-18 130.1 11.8 115 239-358 147-291 (338)
61 cd02509 GDP-M1P_Guanylyltransf 99.5 1.3E-13 2.8E-18 129.1 10.7 155 25-196 83-273 (274)
62 cd02508 ADP_Glucose_PP ADP-glu 99.5 3.3E-13 7.2E-18 120.3 10.7 110 23-191 90-200 (200)
63 PRK05450 3-deoxy-manno-octulos 99.5 1.2E-12 2.6E-17 120.2 14.3 164 24-204 72-244 (245)
64 COG1044 LpxD UDP-3-O-[3-hydrox 99.4 2.5E-12 5.3E-17 120.2 14.7 66 210-279 104-171 (338)
65 TIGR01479 GMP_PMI mannose-1-ph 99.4 1.7E-12 3.7E-17 130.1 14.3 162 24-201 82-281 (468)
66 cd02540 GT2_GlmU_N_bac N-termi 99.4 2E-12 4.3E-17 117.3 13.1 170 5-197 39-229 (229)
67 cd04651 LbH_G1P_AT_C Glucose-1 99.4 3.7E-12 8.1E-17 101.7 12.6 102 229-353 1-103 (104)
68 cd03352 LbH_LpxD UDP-3-O-acyl- 99.4 2.9E-12 6.3E-17 114.7 12.3 145 213-360 9-183 (205)
69 cd02517 CMP-KDO-Synthetase CMP 99.4 4.7E-12 1E-16 115.9 13.6 157 25-202 73-238 (239)
70 cd04646 LbH_Dynactin_6 Dynacti 99.3 1.6E-11 3.4E-16 106.2 12.2 100 239-357 17-131 (164)
71 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 1.5E-11 3.3E-16 109.1 11.7 124 212-359 10-158 (193)
72 TIGR01852 lipid_A_lpxA acyl-[a 99.3 1.4E-11 3E-16 114.1 10.3 118 223-347 28-170 (254)
73 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.3 2.9E-11 6.3E-16 112.0 11.9 106 239-347 47-171 (254)
74 cd02507 eIF-2B_gamma_N_like Th 99.3 1.2E-11 2.5E-16 111.8 8.4 117 25-151 88-216 (216)
75 PLN02296 carbonate dehydratase 99.3 3.8E-11 8.2E-16 111.4 11.7 105 218-344 53-172 (269)
76 cd04745 LbH_paaY_like paaY-lik 99.3 6.3E-11 1.4E-15 101.5 11.8 95 239-358 18-121 (155)
77 TIGR00965 dapD 2,3,4,5-tetrahy 99.3 2.9E-11 6.4E-16 110.9 10.0 37 309-345 174-210 (269)
78 TIGR02287 PaaY phenylacetic ac 99.3 5.1E-11 1.1E-15 105.4 11.3 100 220-341 11-119 (192)
79 PRK14353 glmU bifunctional N-a 99.2 5.3E-11 1.2E-15 118.9 12.0 103 239-360 268-395 (446)
80 PRK13368 3-deoxy-manno-octulos 99.2 1.1E-10 2.3E-15 106.8 12.9 154 25-203 74-237 (238)
81 cd05636 LbH_G1P_TT_C_like Puta 99.2 7.3E-11 1.6E-15 101.9 10.9 103 239-360 17-144 (163)
82 PRK05289 UDP-N-acetylglucosami 99.2 7E-11 1.5E-15 109.9 11.5 44 316-359 107-155 (262)
83 TIGR01173 glmU UDP-N-acetylglu 99.2 5E-11 1.1E-15 119.1 10.3 118 223-360 261-405 (451)
84 PRK14356 glmU bifunctional N-a 99.2 5.7E-11 1.2E-15 119.1 10.6 119 222-359 268-412 (456)
85 cd04198 eIF-2B_gamma_N The N-t 99.2 2.7E-11 5.9E-16 109.2 7.3 117 25-151 86-214 (214)
86 cd04645 LbH_gamma_CA_like Gamm 99.2 2.9E-10 6.3E-15 97.1 13.3 97 239-354 17-122 (153)
87 PLN02472 uncharacterized prote 99.2 1.5E-10 3.2E-15 106.1 11.9 99 219-339 61-174 (246)
88 cd00710 LbH_gamma_CA Gamma car 99.2 1.9E-10 4.2E-15 99.7 12.0 115 220-359 5-130 (167)
89 cd04650 LbH_FBP Ferripyochelin 99.2 2.1E-10 4.6E-15 98.1 12.1 86 239-342 18-112 (154)
90 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 7.9E-11 1.7E-15 108.9 9.7 38 298-335 177-215 (272)
91 TIGR03308 phn_thr-fam phosphon 99.2 1.1E-10 2.5E-15 104.3 10.2 27 298-324 43-69 (204)
92 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1.7E-10 3.7E-15 87.6 9.8 65 242-325 2-67 (81)
93 PRK12461 UDP-N-acetylglucosami 99.2 1.4E-10 3.1E-15 107.1 11.0 116 239-360 23-152 (255)
94 PRK14358 glmU bifunctional N-a 99.2 1.6E-10 3.4E-15 116.7 11.8 120 221-359 268-413 (481)
95 cd03350 LbH_THP_succinylT 2,3, 99.2 2.4E-10 5.1E-15 96.1 10.9 33 239-271 31-65 (139)
96 TIGR01853 lipid_A_lpxD UDP-3-O 99.2 1.8E-10 4E-15 110.1 11.1 122 187-326 66-213 (324)
97 COG1207 GlmU N-acetylglucosami 99.1 1.2E-10 2.6E-15 111.4 8.9 121 220-359 265-411 (460)
98 PRK13627 carnitine operon prot 99.1 4.8E-10 1E-14 99.5 11.9 86 239-342 28-122 (196)
99 COG0663 PaaY Carbonic anhydras 99.1 4.1E-10 8.8E-15 96.5 10.6 87 239-343 29-124 (176)
100 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 4.1E-10 8.9E-15 85.5 9.6 77 226-321 2-80 (81)
101 cd04745 LbH_paaY_like paaY-lik 99.1 4.6E-10 1E-14 96.1 10.9 26 298-323 46-76 (155)
102 PRK14352 glmU bifunctional N-a 99.1 2E-10 4.3E-15 116.0 9.7 117 224-360 272-414 (482)
103 TIGR00965 dapD 2,3,4,5-tetrahy 99.1 3E-10 6.4E-15 104.3 9.9 85 240-338 130-215 (269)
104 PRK14357 glmU bifunctional N-a 99.1 3.2E-10 6.8E-15 113.4 10.4 118 223-360 255-398 (448)
105 cd03352 LbH_LpxD UDP-3-O-acyl- 99.1 6.7E-10 1.5E-14 99.4 11.4 51 309-360 115-165 (205)
106 cd03356 LbH_G1P_AT_C_like Left 99.1 3.7E-10 8E-15 85.2 8.1 65 242-325 2-67 (79)
107 TIGR03570 NeuD_NnaD sugar O-ac 99.1 1.4E-09 3.1E-14 96.3 12.8 53 255-325 117-170 (201)
108 PRK09451 glmU bifunctional N-a 99.1 3.7E-10 8.1E-15 113.2 10.0 116 225-360 267-409 (456)
109 PRK00892 lpxD UDP-3-O-[3-hydro 99.1 8.2E-10 1.8E-14 106.7 11.5 90 190-279 76-172 (343)
110 PRK13627 carnitine operon prot 99.1 7E-10 1.5E-14 98.5 10.0 97 240-360 17-121 (196)
111 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.1 3.7E-10 8E-15 102.9 8.4 103 213-331 88-195 (231)
112 TIGR02287 PaaY phenylacetic ac 99.1 7.6E-10 1.6E-14 98.0 10.1 84 255-358 26-117 (192)
113 cd04646 LbH_Dynactin_6 Dynacti 99.1 1.1E-09 2.4E-14 94.6 10.8 97 211-326 5-119 (164)
114 PLN02296 carbonate dehydratase 99.1 8.5E-10 1.8E-14 102.4 10.6 86 255-360 70-169 (269)
115 PRK14354 glmU bifunctional N-a 99.0 6.9E-10 1.5E-14 111.3 10.0 115 225-359 267-407 (458)
116 cd00710 LbH_gamma_CA Gamma car 99.0 2.3E-09 5.1E-14 92.9 12.0 96 212-325 9-116 (167)
117 cd05787 LbH_eIF2B_epsilon eIF- 99.0 1E-09 2.2E-14 82.6 8.2 65 242-325 2-67 (79)
118 cd03359 LbH_Dynactin_5 Dynacti 99.0 2.9E-09 6.4E-14 91.7 12.1 87 240-344 22-125 (161)
119 cd03360 LbH_AT_putative Putati 99.0 3.1E-09 6.7E-14 93.2 12.2 53 255-325 114-167 (197)
120 PRK14355 glmU bifunctional N-a 99.0 1.6E-09 3.5E-14 108.7 10.3 75 239-332 268-344 (459)
121 cd04650 LbH_FBP Ferripyochelin 99.0 3.7E-09 7.9E-14 90.5 10.9 84 255-358 18-109 (154)
122 PRK11830 dapD 2,3,4,5-tetrahyd 99.0 2.2E-09 4.8E-14 99.4 10.2 100 224-345 104-213 (272)
123 cd03350 LbH_THP_succinylT 2,3, 99.0 3.4E-09 7.4E-14 89.0 10.4 88 240-345 14-112 (139)
124 cd03356 LbH_G1P_AT_C_like Left 99.0 3.5E-09 7.5E-14 79.8 9.4 75 226-319 2-79 (79)
125 PRK14360 glmU bifunctional N-a 99.0 1.9E-09 4.1E-14 107.8 10.4 101 239-360 280-405 (450)
126 PLN02472 uncharacterized prote 99.0 2.8E-09 6.1E-14 97.7 10.5 97 239-359 65-175 (246)
127 cd03358 LbH_WxcM_N_like WcxM-l 99.0 2.2E-09 4.8E-14 87.3 8.8 82 239-340 16-99 (119)
128 cd04649 LbH_THP_succinylT_puta 99.0 3E-09 6.5E-14 88.8 9.6 10 240-249 14-23 (147)
129 cd04645 LbH_gamma_CA_like Gamm 99.0 3.8E-09 8.2E-14 90.2 10.5 96 240-359 6-109 (153)
130 COG0836 {ManC} Mannose-1-phosp 99.0 5.3E-09 1.2E-13 97.2 12.1 159 26-201 87-282 (333)
131 PRK14359 glmU bifunctional N-a 99.0 1.9E-09 4.2E-14 107.1 9.8 40 226-265 285-325 (430)
132 KOG1461 Translation initiation 99.0 1.2E-09 2.7E-14 108.6 8.1 99 242-360 318-423 (673)
133 COG2171 DapD Tetrahydrodipicol 99.0 1.6E-09 3.4E-14 98.1 8.0 104 222-347 107-221 (271)
134 TIGR03308 phn_thr-fam phosphon 98.9 6E-09 1.3E-13 93.2 10.9 59 213-272 10-70 (204)
135 cd04651 LbH_G1P_AT_C Glucose-1 98.9 5.6E-09 1.2E-13 83.3 9.5 76 240-341 2-77 (104)
136 cd05824 LbH_M1P_guanylylT_C Ma 98.9 5.5E-09 1.2E-13 79.1 7.6 63 240-325 6-68 (80)
137 COG0663 PaaY Carbonic anhydras 98.9 1.1E-08 2.5E-13 87.7 10.1 106 210-335 16-128 (176)
138 COG1043 LpxA Acyl-[acyl carrie 98.9 1.9E-08 4.2E-13 89.5 10.9 133 219-358 5-155 (260)
139 cd05787 LbH_eIF2B_epsilon eIF- 98.9 1.7E-08 3.7E-13 75.8 9.2 75 226-319 2-79 (79)
140 cd03360 LbH_AT_putative Putati 98.9 1.3E-08 2.8E-13 89.3 9.6 9 187-195 59-67 (197)
141 TIGR03570 NeuD_NnaD sugar O-ac 98.8 1.8E-08 3.9E-13 89.2 9.5 92 187-278 62-158 (201)
142 cd05635 LbH_unknown Uncharacte 98.8 2.5E-08 5.5E-13 79.1 9.0 67 239-326 29-97 (101)
143 PRK15460 cpsB mannose-1-phosph 98.8 3.7E-08 8E-13 98.6 11.3 161 25-201 88-290 (478)
144 TIGR03536 DapD_gpp 2,3,4,5-tet 98.8 2E-08 4.3E-13 93.4 8.3 15 309-323 251-265 (341)
145 cd05824 LbH_M1P_guanylylT_C Ma 98.8 5.2E-08 1.1E-12 73.7 9.3 62 239-319 17-80 (80)
146 cd04649 LbH_THP_succinylT_puta 98.8 6.9E-08 1.5E-12 80.7 10.6 53 218-271 8-63 (147)
147 cd03358 LbH_WxcM_N_like WcxM-l 98.8 2.6E-08 5.6E-13 81.0 7.6 85 243-345 2-98 (119)
148 cd05635 LbH_unknown Uncharacte 98.7 1E-07 2.2E-12 75.6 10.4 65 240-324 12-78 (101)
149 KOG1462 Translation initiation 98.7 3E-08 6.6E-13 93.7 8.2 119 186-326 300-420 (433)
150 cd03359 LbH_Dynactin_5 Dynacti 98.7 8.1E-08 1.8E-12 82.7 10.2 83 241-344 9-107 (161)
151 PRK10502 putative acyl transfe 98.7 5.3E-08 1.1E-12 85.6 9.1 40 240-279 52-97 (182)
152 PRK09527 lacA galactoside O-ac 98.7 2E-07 4.3E-12 83.2 11.1 103 220-331 58-166 (203)
153 PLN02917 CMP-KDO synthetase 98.7 6.2E-07 1.3E-11 84.7 14.9 163 25-207 119-290 (293)
154 PRK05293 glgC glucose-1-phosph 98.7 9.5E-08 2.1E-12 93.6 9.4 92 212-324 283-380 (380)
155 PRK11132 cysE serine acetyltra 98.6 7.1E-08 1.5E-12 89.4 7.6 79 240-330 148-227 (273)
156 cd00208 LbetaH Left-handed par 98.6 1.9E-07 4.1E-12 69.5 8.6 33 241-273 2-36 (78)
157 TIGR03535 DapD_actino 2,3,4,5- 98.6 1.7E-07 3.6E-12 86.9 9.7 16 92-107 6-21 (319)
158 PRK09677 putative lipopolysacc 98.6 5.2E-07 1.1E-11 80.0 11.6 33 240-272 66-102 (192)
159 TIGR03536 DapD_gpp 2,3,4,5-tet 98.6 1.7E-07 3.7E-12 87.2 8.7 11 348-358 269-279 (341)
160 KOG3121 Dynactin, subunit p25 98.6 1.1E-07 2.4E-12 77.8 6.5 98 239-356 39-148 (184)
161 cd00208 LbetaH Left-handed par 98.6 3.1E-07 6.8E-12 68.3 8.5 51 256-324 1-60 (78)
162 PLN02694 serine O-acetyltransf 98.6 2.6E-07 5.6E-12 85.9 9.3 76 240-327 167-243 (294)
163 PRK09677 putative lipopolysacc 98.6 4.1E-07 8.9E-12 80.7 10.3 65 225-307 31-101 (192)
164 cd03357 LbH_MAT_GAT Maltose O- 98.6 6.4E-07 1.4E-11 77.8 11.3 101 239-353 62-167 (169)
165 PRK10502 putative acyl transfe 98.5 7.1E-07 1.5E-11 78.5 10.0 83 239-330 71-158 (182)
166 PRK02862 glgC glucose-1-phosph 98.5 4.6E-07 1E-11 90.3 9.8 100 240-360 293-423 (429)
167 PRK10092 maltose O-acetyltrans 98.5 9.3E-07 2E-11 77.7 10.6 102 239-354 73-179 (183)
168 TIGR03535 DapD_actino 2,3,4,5- 98.5 1.2E-06 2.7E-11 81.2 11.1 11 239-249 165-175 (319)
169 PLN02357 serine acetyltransfer 98.5 7.6E-07 1.6E-11 85.1 9.7 24 255-278 246-269 (360)
170 cd03357 LbH_MAT_GAT Maltose O- 98.5 7.9E-07 1.7E-11 77.2 9.1 69 255-347 62-151 (169)
171 PLN02241 glucose-1-phosphate a 98.5 6.4E-07 1.4E-11 89.4 9.4 94 244-358 304-421 (436)
172 cd05825 LbH_wcaF_like wcaF-lik 98.4 1.9E-06 4.1E-11 68.9 10.1 96 241-353 5-105 (107)
173 PRK09527 lacA galactoside O-ac 98.4 1E-06 2.2E-11 78.7 9.3 48 242-307 58-111 (203)
174 PF07959 Fucokinase: L-fucokin 98.4 1.9E-06 4.1E-11 85.2 12.1 96 48-157 54-159 (414)
175 PRK11132 cysE serine acetyltra 98.4 6.2E-07 1.3E-11 83.2 7.7 27 298-324 200-227 (273)
176 cd04647 LbH_MAT_like Maltose O 98.4 1.1E-06 2.3E-11 70.1 8.1 33 241-273 3-39 (109)
177 TIGR02091 glgC glucose-1-phosp 98.4 9.7E-07 2.1E-11 85.8 9.3 63 243-325 281-344 (361)
178 TIGR01208 rmlA_long glucose-1- 98.4 1.1E-06 2.5E-11 85.1 9.6 91 239-355 254-352 (353)
179 COG1045 CysE Serine acetyltran 98.4 8.7E-07 1.9E-11 77.0 7.6 26 334-359 121-151 (194)
180 PLN02694 serine O-acetyltransf 98.4 7.1E-07 1.5E-11 83.0 7.5 53 255-325 186-247 (294)
181 TIGR02092 glgD glucose-1-phosp 98.4 1.1E-06 2.4E-11 85.7 9.1 61 239-325 278-338 (369)
182 PRK10191 putative acyl transfe 98.4 2.7E-06 5.9E-11 71.9 10.1 27 298-324 99-126 (146)
183 TIGR01172 cysE serine O-acetyl 98.4 1.7E-06 3.6E-11 74.7 8.8 37 240-278 68-104 (162)
184 COG0448 GlgC ADP-glucose pyrop 98.4 2E-06 4.3E-11 82.6 9.5 84 239-344 279-363 (393)
185 PLN02739 serine acetyltransfer 98.4 1.8E-06 3.9E-11 82.0 9.0 37 240-278 212-248 (355)
186 PRK00725 glgC glucose-1-phosph 98.3 1.1E-06 2.4E-11 87.4 7.8 67 251-344 323-389 (425)
187 PLN02739 serine acetyltransfer 98.3 1E-06 2.2E-11 83.7 6.8 33 309-347 258-290 (355)
188 TIGR01172 cysE serine O-acetyl 98.3 1.8E-06 3.9E-11 74.5 7.7 19 255-273 87-105 (162)
189 COG1213 Predicted sugar nucleo 98.3 9.6E-07 2.1E-11 79.1 6.1 165 4-207 43-231 (239)
190 PRK10191 putative acyl transfe 98.3 1.8E-06 3.9E-11 73.0 7.4 80 239-331 47-127 (146)
191 COG1208 GCD1 Nucleoside-diphos 98.3 2.4E-06 5.2E-11 83.0 9.1 54 255-326 261-314 (358)
192 COG2171 DapD Tetrahydrodipicol 98.3 2.2E-06 4.7E-11 78.0 7.5 104 214-333 111-219 (271)
193 cd03354 LbH_SAT Serine acetylt 98.3 3.2E-06 6.9E-11 66.8 7.5 63 255-347 22-87 (101)
194 PRK00844 glgC glucose-1-phosph 98.3 3.1E-06 6.8E-11 83.7 9.0 67 252-345 312-378 (407)
195 PLN02357 serine acetyltransfer 98.3 2.1E-06 4.6E-11 82.0 7.3 69 239-325 232-313 (360)
196 cd03354 LbH_SAT Serine acetylt 98.2 4.2E-06 9.2E-11 66.1 7.7 28 298-325 61-89 (101)
197 cd05825 LbH_wcaF_like wcaF-lik 98.2 4.4E-06 9.4E-11 66.8 7.6 25 255-279 3-29 (107)
198 cd04647 LbH_MAT_like Maltose O 98.2 7.6E-06 1.6E-10 65.1 8.4 16 239-254 21-37 (109)
199 COG1045 CysE Serine acetyltran 98.2 1.1E-05 2.4E-10 70.2 9.9 78 241-326 75-155 (194)
200 PRK10092 maltose O-acetyltrans 98.2 4.8E-06 1E-10 73.2 7.2 9 298-306 100-108 (183)
201 COG0110 WbbJ Acetyltransferase 97.9 4.3E-05 9.4E-10 67.2 8.3 103 239-354 67-174 (190)
202 cd03349 LbH_XAT Xenobiotic acy 97.9 5E-05 1.1E-09 64.2 7.4 24 256-279 2-27 (145)
203 KOG4042 Dynactin subunit p27/W 97.9 2.1E-05 4.6E-10 65.1 4.7 111 224-341 9-140 (190)
204 PRK13412 fkp bifunctional fuco 97.8 0.00014 3.1E-09 78.0 12.1 196 49-273 154-372 (974)
205 cd03349 LbH_XAT Xenobiotic acy 97.8 0.00012 2.5E-09 62.0 9.1 33 298-330 74-107 (145)
206 KOG1460 GDP-mannose pyrophosph 97.8 7.4E-05 1.6E-09 68.9 7.8 96 213-330 290-393 (407)
207 COG0110 WbbJ Acetyltransferase 97.7 9.8E-05 2.1E-09 65.0 7.1 16 255-270 67-82 (190)
208 KOG4750 Serine O-acetyltransfe 97.7 6.6E-05 1.4E-09 66.5 5.5 79 261-360 148-233 (269)
209 TIGR02353 NRPS_term_dom non-ri 97.6 0.00021 4.5E-09 75.4 9.1 84 239-335 112-199 (695)
210 KOG4750 Serine O-acetyltransfe 97.5 0.00018 3.9E-09 63.8 5.9 80 240-331 155-235 (269)
211 KOG1322 GDP-mannose pyrophosph 97.5 0.0002 4.3E-09 67.1 5.6 47 298-344 306-352 (371)
212 KOG4042 Dynactin subunit p27/W 97.4 0.0001 2.2E-09 61.2 2.6 103 214-335 17-140 (190)
213 cd02513 CMP-NeuAc_Synthase CMP 97.4 0.0019 4E-08 58.0 11.2 139 27-202 79-221 (223)
214 TIGR02353 NRPS_term_dom non-ri 97.3 0.00049 1.1E-08 72.6 7.3 75 239-326 597-675 (695)
215 TIGR00466 kdsB 3-deoxy-D-manno 97.2 0.0063 1.4E-07 55.7 12.8 141 48-197 89-237 (238)
216 TIGR00453 ispD 2-C-methyl-D-er 97.1 0.0036 7.8E-08 56.1 9.9 136 28-202 77-215 (217)
217 PF00132 Hexapep: Bacterial tr 96.9 0.0011 2.3E-08 41.8 3.4 12 258-269 4-15 (36)
218 PRK00155 ispD 2-C-methyl-D-ery 96.9 0.0062 1.3E-07 55.1 9.7 137 27-206 81-224 (227)
219 COG4801 Predicted acyltransfer 96.9 0.0035 7.6E-08 56.0 7.4 64 239-326 22-86 (277)
220 COG4801 Predicted acyltransfer 96.8 0.0055 1.2E-07 54.8 8.2 85 219-326 18-104 (277)
221 KOG3121 Dynactin, subunit p25 96.8 0.0018 4E-08 53.4 4.6 32 239-270 54-99 (184)
222 PF00132 Hexapep: Bacterial tr 96.8 0.0018 3.8E-08 40.7 3.4 33 239-271 1-35 (36)
223 cd02516 CDP-ME_synthetase CDP- 96.4 0.014 3.1E-07 52.1 8.2 132 27-199 79-217 (218)
224 PF14602 Hexapep_2: Hexapeptid 96.2 0.0072 1.6E-07 37.7 3.4 14 257-270 3-16 (34)
225 TIGR03584 PseF pseudaminic aci 96.1 0.15 3.2E-06 46.2 13.3 142 26-204 76-220 (222)
226 PRK09382 ispDF bifunctional 2- 96.0 0.077 1.7E-06 52.0 11.5 130 27-206 82-214 (378)
227 COG1212 KdsB CMP-2-keto-3-deox 96.0 0.17 3.7E-06 45.4 12.3 163 25-206 74-244 (247)
228 PF14602 Hexapep_2: Hexapeptid 95.8 0.015 3.3E-07 36.2 3.7 14 310-323 3-16 (34)
229 PRK13385 2-C-methyl-D-erythrit 95.0 0.2 4.4E-06 45.3 9.8 138 29-206 85-225 (230)
230 PRK00317 mobA molybdopterin-gu 91.9 1.4 2.9E-05 38.6 9.4 42 26-73 74-117 (193)
231 PF12804 NTP_transf_3: MobA-li 91.7 0.37 8E-06 40.6 5.3 53 25-82 69-123 (160)
232 PLN02474 UTP--glucose-1-phosph 90.3 10 0.00022 38.3 14.7 232 47-314 213-466 (469)
233 PRK00560 molybdopterin-guanine 87.0 5 0.00011 35.3 9.2 57 143-204 133-191 (196)
234 TIGR00454 conserved hypothetic 87.0 0.63 1.4E-05 40.8 3.3 71 5-80 40-124 (183)
235 PF07959 Fucokinase: L-fucokin 86.7 1.4 3.1E-05 43.8 6.0 51 260-329 272-322 (414)
236 cd04182 GT_2_like_f GT_2_like_ 82.6 2.5 5.4E-05 36.1 5.1 48 25-76 73-122 (186)
237 TIGR02665 molyb_mobA molybdopt 81.9 2.4 5.2E-05 36.6 4.7 47 24-76 71-119 (186)
238 COG1083 NeuA CMP-N-acetylneura 80.8 14 0.0003 33.2 8.9 139 30-207 84-225 (228)
239 COG2068 Uncharacterized MobA-r 80.6 12 0.00026 33.2 8.5 66 4-73 43-125 (199)
240 TIGR03310 matur_ygfJ molybdenu 78.7 4.2 9.2E-05 35.0 5.2 50 25-79 73-124 (188)
241 COG4750 LicC CTP:phosphocholin 78.6 12 0.00026 33.1 7.7 162 3-206 42-227 (231)
242 TIGR03202 pucB xanthine dehydr 78.0 6.3 0.00014 34.2 6.1 48 24-74 76-125 (190)
243 cd02503 MobA MobA catalyzes th 75.8 5.1 0.00011 34.3 4.9 41 24-70 67-109 (181)
244 PRK14490 putative bifunctional 61.1 59 0.0013 31.7 9.3 38 26-69 244-283 (369)
245 PLN02728 2-C-methyl-D-erythrit 59.8 81 0.0018 29.0 9.5 136 27-206 102-246 (252)
246 PRK02726 molybdopterin-guanine 59.0 19 0.0004 31.7 5.0 42 25-72 77-120 (200)
247 cd02518 GT2_SpsF SpsF is a gly 56.2 1.2E+02 0.0025 27.1 9.9 32 47-78 88-121 (233)
248 PRK13412 fkp bifunctional fuco 55.3 22 0.00048 39.1 5.6 29 298-326 343-372 (974)
249 PF00535 Glycos_transf_2: Glyc 53.3 63 0.0014 25.9 7.2 51 26-82 64-115 (169)
250 cd04180 UGPase_euk_like Eukary 52.0 0.8 1.7E-05 42.7 -5.2 19 137-155 222-240 (266)
251 PRK14489 putative bifunctional 46.9 30 0.00065 33.7 4.7 45 26-76 78-124 (366)
252 PF04519 Bactofilin: Polymer-f 39.8 1.2E+02 0.0025 23.3 6.2 94 239-360 2-95 (101)
253 cd00897 UGPase_euk Eukaryotic 39.5 2.4E+02 0.0052 26.8 9.3 96 47-157 137-234 (300)
254 cd00761 Glyco_tranf_GTA_type G 38.5 94 0.002 24.2 5.8 41 26-72 63-104 (156)
255 COG0746 MobA Molybdopterin-gua 38.4 58 0.0012 28.7 4.7 42 27-74 73-116 (192)
256 COG1664 CcmA Integral membrane 38.1 2.4E+02 0.0053 23.7 10.0 69 252-341 47-116 (146)
257 cd04188 DPG_synthase DPG_synth 37.7 72 0.0016 27.7 5.3 51 26-82 68-119 (211)
258 PLN02726 dolichyl-phosphate be 35.9 71 0.0015 28.6 5.1 49 26-80 79-128 (243)
259 cd06442 DPM1_like DPM1_like re 33.0 1.3E+02 0.0028 26.0 6.2 49 26-80 64-113 (224)
260 cd04193 UDPGlcNAc_PPase UDPGlc 30.1 2.7E+02 0.0059 26.6 8.2 121 24-157 132-257 (323)
261 cd06427 CESA_like_2 CESA_like_ 30.0 1.1E+02 0.0025 27.1 5.4 50 26-81 70-120 (241)
262 cd04179 DPM_DPG-synthase_like 29.4 1.4E+02 0.003 24.8 5.6 50 26-81 65-115 (185)
263 KOG2638 UDP-glucose pyrophosph 25.3 1.5E+02 0.0031 29.6 5.3 51 255-319 447-497 (498)
264 PRK00576 molybdopterin-guanine 25.2 1.3E+02 0.0027 25.7 4.6 45 26-73 57-103 (178)
265 TIGR01556 rhamnosyltran L-rham 24.1 5.4E+02 0.012 23.3 9.1 51 26-79 56-107 (281)
266 cd04187 DPM1_like_bac Bacteria 23.6 1.8E+02 0.004 24.2 5.3 48 26-80 66-114 (181)
267 PF01704 UDPGP: UTP--glucose-1 23.0 2.8E+02 0.0061 27.7 7.0 96 47-157 192-289 (420)
268 cd06423 CESA_like CESA_like is 22.6 2E+02 0.0042 22.9 5.2 43 26-74 64-107 (180)
269 PRK14500 putative bifunctional 22.3 95 0.0021 30.1 3.6 41 25-71 229-271 (346)
270 cd04186 GT_2_like_c Subfamily 21.6 2.8E+02 0.0061 22.1 6.0 44 26-75 60-104 (166)
271 cd06167 LabA_like LabA_like pr 21.2 2.5E+02 0.0054 22.9 5.5 33 47-83 100-132 (149)
272 TIGR03552 F420_cofC 2-phospho- 21.0 84 0.0018 27.1 2.7 41 27-71 75-117 (195)
273 PF01936 NYN: NYN domain; Int 20.5 2.2E+02 0.0047 22.9 5.0 30 48-81 97-126 (146)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-49 Score=373.71 Aligned_cols=309 Identities=38% Similarity=0.667 Sum_probs=273.0
Q ss_pred CCCCcEEEeeCcccCCCCCCccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEe
Q 018109 3 QLTGNSQVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 82 (360)
Q Consensus 3 ~~~g~~~i~~~~~~~~~~~~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~ 82 (360)
...|+..++++.+. ...+.||.|||+|+++....+.+ ...+.+|+++||+++++|+++|+++|.+++|++|+++.
T Consensus 80 ~~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~ 154 (393)
T COG0448 80 RKNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVK 154 (393)
T ss_pred cccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEE
Confidence 45567777777777 23467999999999999999986 35799999999999999999999999999999999999
Q ss_pred ecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCC--
Q 018109 83 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-- 160 (360)
Q Consensus 83 ~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~-- 160 (360)
+++..++++||++.+|++++|++|.|||..... ...++++|+|+|++++|.++|++...
T Consensus 155 ~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~ 215 (393)
T COG0448 155 EVPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDP 215 (393)
T ss_pred ECChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhccc
Confidence 999988999999999999999999999987210 12489999999999999999987543
Q ss_pred -CCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-cCceee
Q 018109 161 -TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV 238 (360)
Q Consensus 161 -~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~ 238 (360)
...+|.++++|.+++.+.+++|+++|||.|+||.++|++||+++++..+.+.+++++|+|++.....||+++ .++.+.
T Consensus 216 ~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~ 295 (393)
T COG0448 216 NSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVS 295 (393)
T ss_pred CccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEe
Confidence 356899999999999988999999999999999999999999999977778899999999999999999999 778889
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEEC
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 318 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig 318 (360)
+|.|++||.|.+ .|.+|+|+.+++|+.++.|++|++|++ |.||+||.|++|||++||.|+
T Consensus 296 nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~ 355 (393)
T COG0448 296 NSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIG 355 (393)
T ss_pred eeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeC
Confidence 999999999998 999999999999999999999999998 999999999999999999999
Q ss_pred CCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 319 KNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
+|++|++.+ .+...-. +.+. +++++|+++..++.+..
T Consensus 356 ~g~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 356 EGVVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CCcEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 999999875 2222222 4444 78889999988877653
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.3e-45 Score=366.50 Aligned_cols=337 Identities=74% Similarity=1.225 Sum_probs=284.0
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
|++|||+|+++++.++++.....+++|||++||++++.|+.+++++|+++++++|+++.+++.+++++||++.+|++++|
T Consensus 99 ~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v 178 (436)
T PLN02241 99 WFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178 (436)
T ss_pred cccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCE
Confidence 67999999999988876411011479999999999999999999999999999999999887655789999999888999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccccc-CceEEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANE-QFLKAY 182 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~-~~I~~~ 182 (360)
.+|.|||..+....+++++++|+.+++..+....++++|+|+|+|++|..++++..+...++..++++.++++ .++++|
T Consensus 179 ~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~~ 258 (436)
T PLN02241 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAY 258 (436)
T ss_pred EEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEEE
Confidence 9999999765555677888777755543222357899999999999998777665433346667889988875 689999
Q ss_pred EeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEecCe
Q 018109 183 LFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRS 262 (360)
Q Consensus 183 ~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~ 262 (360)
.+++||.|+|+|++|+++++.+|...+...++....+++......+|+.+.++.+.++.|+++|.|+++.|.+|+||++|
T Consensus 259 ~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~~~~~I~~~~I~~svI~~~~ 338 (436)
T PLN02241 259 LFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRS 338 (436)
T ss_pred eeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEEcCCcEEcCeEEEeeEEcCCC
Confidence 99999999999999999999999877666677777888888778899999888888999999999998888999999999
Q ss_pred EECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEe
Q 018109 263 RINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIR 342 (360)
Q Consensus 263 ~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~ 342 (360)
.|+++|.|.+++++|.+|++...........|..++.||++|.|++++|++++.||+++++.++.++.++.++|+++.++
T Consensus 339 ~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~ 418 (436)
T PLN02241 339 RIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIR 418 (436)
T ss_pred EECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEe
Confidence 99999999999999977666543222122233233589999999999999999999999999999999999999999999
Q ss_pred CCeEEEcCCcEeCCCccC
Q 018109 343 SGVTVILKNSVITDGFVI 360 (360)
Q Consensus 343 ~~~~~ig~~~~i~~g~~i 360 (360)
+|.++||++++|++|++|
T Consensus 419 ~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 419 SGIVVILKNAVIPDGTVI 436 (436)
T ss_pred CCEEEEcCCcEeCCCCCC
Confidence 998899999999999986
No 3
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=8e-45 Score=359.92 Aligned_cols=332 Identities=57% Similarity=0.987 Sum_probs=277.1
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
++|||+||+++.+++++ ..+++|||++||+++++|+++++++|+++++++|+++.+++.+.+..||++.+|++++|.
T Consensus 97 ~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~ 173 (429)
T PRK02862 97 FQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRIT 173 (429)
T ss_pred ccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEE
Confidence 48999999999999963 123789999999999999999999999999999999987765457789999998889999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~ 184 (360)
.|.|||+......+.++..++..++.+......++++|+|+|++++|..++++. +...++.+++++.++++.++.+|++
T Consensus 174 ~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~~~~dil~~l~~~~~v~~~~~ 252 (429)
T PRK02862 174 EFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTDFGKEIIPEAIRDYKVQSYLF 252 (429)
T ss_pred EEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhhhHHHHHHHHhccCcEEEEEe
Confidence 999999754434455666555555544333356899999999999998776653 2234677789999998999999999
Q ss_pred CCceeecCCHHHHHHHHHHhh-cCCCCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEecCeE
Q 018109 185 NDYWEDIGTIRSFFEANLALT-AHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSR 263 (360)
Q Consensus 185 ~g~w~digtp~~~~~a~~~~l-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ 263 (360)
++||.|+|||++|+++++.++ ...+....+.+.+++++.+.+.+|+.+.++.+.++.||++|.|.++.|.+|+||++|.
T Consensus 253 ~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i~~~~i~~svi~~~~~ 332 (429)
T PRK02862 253 DGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSR 332 (429)
T ss_pred CCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEECCcEEEEEEEeCCcE
Confidence 999999999999999999998 5555556667778889888999999888888899999999999778889999999999
Q ss_pred ECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeC
Q 018109 264 INANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRS 343 (360)
Q Consensus 264 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (360)
|++++.|.+|+++|+.|+.....-+.....|..++.||++|.|.+|+|+++|+||+++++.+...+.+..+...|+.|+.
T Consensus 333 Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (429)
T PRK02862 333 IESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRD 412 (429)
T ss_pred ECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeC
Confidence 99999999999999655443322222233444459999999999999999999999999999988888777888999999
Q ss_pred CeEEEcCCcEeCCCccC
Q 018109 344 GVTVILKNSVITDGFVI 360 (360)
Q Consensus 344 ~~~~ig~~~~i~~g~~i 360 (360)
|+++|++++++++|++|
T Consensus 413 ~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 413 GIVVVVKNAVIPDGTVI 429 (429)
T ss_pred CEEEEcCCcCCCCCCCC
Confidence 98899999999999875
No 4
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=6.2e-43 Score=319.11 Aligned_cols=292 Identities=38% Similarity=0.601 Sum_probs=237.0
Q ss_pred CCcEEEeeCcccCCCC-----------------------CCccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeec
Q 018109 5 TGNSQVLAATQTPGEA-----------------------GKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM 61 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~-----------------------~~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~ 61 (360)
.|+++|++..+|.++. ..-|+.||+++.+..++..+ +.+|+|++||++|++
T Consensus 53 sGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~~~~------~~~ffVLnsDvi~~~ 126 (371)
T KOG1322|consen 53 SGITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFE------DAPFFVLNSDVICRM 126 (371)
T ss_pred CCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhhhcC------CCcEEEecCCeeecC
Confidence 5777777777776651 12244455555555544443 248999999999999
Q ss_pred CHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC-CCceEEEEecCCccccccccccccccccccccccccCceee
Q 018109 62 DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS 140 (360)
Q Consensus 62 dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~-~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (360)
||++|+++|++++++.|+++.++++ +++||++..|+ .|+|.+|.|||+... ++-++
T Consensus 127 p~~~~vqfH~~~gae~TI~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkin 183 (371)
T KOG1322|consen 127 PYKEMVQFHRAHGAEITIVVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKIN 183 (371)
T ss_pred CHHHHHHHHHhcCCceEEEEEeccC--ccccceEEEecCCCceeEehhCchhhh---------------------hcccc
Confidence 9999999999999999999999988 89999999997 799999999998432 46778
Q ss_pred eeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCce
Q 018109 141 MGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 220 (360)
Q Consensus 141 ~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v 220 (360)
+|+|+|+|++|++++ ..++ ++..+++|.++++.++++|.++|||+|||+|++|+++...+++..+ .
T Consensus 184 aGiYi~~~~vL~ri~--~~pt--SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~----------~ 249 (371)
T KOG1322|consen 184 AGIYILNPEVLDRIL--LRPT--SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLP----------K 249 (371)
T ss_pred ceEEEECHHHHhHhh--hccc--chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCc----------c
Confidence 999999999999875 2343 5888999999999999999999999999999999999877776553 3
Q ss_pred eccCCCCCCceecCceeec--eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcce
Q 018109 221 YTSRRNLPPSKIDDSKIVD--SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 298 (360)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~--~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (360)
+++.+..||+.+.++.+.+ ..+|++|.|++ +++||++|+|+.++.|.+++++++++++++..|++++.+|. +
T Consensus 250 ~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~ 323 (371)
T KOG1322|consen 250 YTSPRLLPGSKIVGNVLVDSIASIGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--V 323 (371)
T ss_pred cCCccccCCccccccEeeccccccCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhcccc--c
Confidence 4556777777776666654 45677888876 69999999999999999999999999999999999887774 6
Q ss_pred EECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 299 GIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 299 ~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
.||.++ +|.++++||.++++.|...+.+. ++..++++.++|-+++.|
T Consensus 324 ~IG~~~-----~id~~a~lG~nV~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI 370 (371)
T KOG1322|consen 324 PIGIWA-----RIDKNAVLGKNVIVADEDYVNEG----SGLPIKSGITVVLKPAII 370 (371)
T ss_pred cccCce-----EEecccEeccceEEecccccccc----eeEEeccceeeccccccc
Confidence 666666 77778888888888887776665 667788888877777765
No 5
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4e-40 Score=310.77 Aligned_cols=325 Identities=23% Similarity=0.292 Sum_probs=263.3
Q ss_pred CcEEEeeCcccCCCCCC--------------ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHH
Q 018109 6 GNSQVLAATQTPGEAGK--------------RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 69 (360)
Q Consensus 6 g~~~i~~~~~~~~~~~~--------------~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~ 69 (360)
+.++++.+.+|.+++.+ ..++|||||+.+|.++|.+ ..++++||++||+ |+..+ |++|++.
T Consensus 44 ~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~eqlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~ 120 (460)
T COG1207 44 GPDDIVVVVGHGAEQVREALAERDDVEFVLQEEQLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAA 120 (460)
T ss_pred CcceEEEEEcCCHHHHHHHhccccCceEEEecccCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHh
Confidence 56678888888777332 2258999999999999943 1245799999999 77766 7889999
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|.+.++.++++....++ |..||.+..+++|+|.+++|..+... +++. -..+|+|+|+|+.+
T Consensus 121 ~~~~~~~~tvLt~~~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~---------------eek~--I~eiNtGiy~f~~~ 181 (460)
T COG1207 121 HPAHGAAATVLTAELDD--PTGYGRIVRDGNGEVTAIVEEKDASE---------------EEKQ--IKEINTGIYAFDGA 181 (460)
T ss_pred hhhcCCceEEEEEEcCC--CCCcceEEEcCCCcEEEEEEcCCCCH---------------HHhc--CcEEeeeEEEEcHH
Confidence 99999999999999988 88999999988899999999887643 2221 35889999999999
Q ss_pred HHHHHHHhhCCCCcchhhcccccccc-----cCceEEEEeCCc--eeecCCHHHHHHHHHHhhcC-------------CC
Q 018109 150 ILLNLLRWRFPTANDFGSEIIPASAN-----EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAH-------------PP 209 (360)
Q Consensus 150 vl~~ll~~~~~~~~~~~~~~l~~~i~-----~~~I~~~~~~g~--w~digtp~~~~~a~~~~l~~-------------~~ 209 (360)
.|.++|.... ..+...|.||++.++ +.++.++..+++ ..-+++...|.++++.|.++ .|
T Consensus 182 ~L~~~L~~l~-nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP 260 (460)
T COG1207 182 ALLRALPKLS-NNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDP 260 (460)
T ss_pred HHHHHHHHhc-cccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCC
Confidence 8888887753 334567889998775 578999988754 57788888888888776543 15
Q ss_pred CCCccCCCCceeccCCCCC------------Ccee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEec---
Q 018109 210 MFSFYDATKPIYTSRRNLP------------PSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD--- 272 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~------------~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~--- 272 (360)
.+.+++.+..+..++.|+| +|+| .++.|.|+.|++++.|. .+++.+|.||++|.|||+++|++
T Consensus 261 ~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~ 340 (460)
T COG1207 261 ATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAV 340 (460)
T ss_pred CeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCc
Confidence 6677777777777777777 4455 46777788888888888 48888899999999999988886
Q ss_pred ---eEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccccc-ccCCceEEeCCe---
Q 018109 273 ---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD-RSAEGFYIRSGV--- 345 (360)
Q Consensus 273 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~-~~~~~~~i~~~~--- 345 (360)
.+.+| ||||+|+ .-+++| +++++-++|+++.||++++||+|++..||++..++. +|||+++||+++
T Consensus 341 L~~~~hIG-NFVEvK~---a~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LV 413 (460)
T COG1207 341 LGADVHIG-NFVEVKK---ATIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLV 413 (460)
T ss_pred ccCCCeEe-eeEEEec---ccccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEE
Confidence 45566 6999884 235666 888899999999999999999999999999999988 899999999998
Q ss_pred --EEEcCCcEeCCCccC
Q 018109 346 --TVILKNSVITDGFVI 360 (360)
Q Consensus 346 --~~ig~~~~i~~g~~i 360 (360)
+.||++++|++||+|
T Consensus 414 APV~IGd~a~iaAGStI 430 (460)
T COG1207 414 APVTIGDGATIAAGSTI 430 (460)
T ss_pred eeEEecCCcEEcccceE
Confidence 478999999999986
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.6e-39 Score=313.91 Aligned_cols=278 Identities=37% Similarity=0.616 Sum_probs=234.6
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
|++|||+||++|.+++++ ..+++|||++||++++.|+.++++.|+++++++|+++..++.+.+.+||++.+|++++|
T Consensus 97 ~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V 173 (380)
T PRK05293 97 WYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRI 173 (380)
T ss_pred ccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcE
Confidence 468999999999999963 11368999999999999999999999999999998887765444788999999878899
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCC---CCcchhhccccccccc-Cce
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANE-QFL 179 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~---~~~~~~~~~l~~~i~~-~~I 179 (360)
.+|.|||..+. ..+.++|+|+|++++|..++++... ...++..++++.++++ .++
T Consensus 174 ~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v 232 (380)
T PRK05293 174 VEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKL 232 (380)
T ss_pred EEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeE
Confidence 99999986432 4688999999999999777665321 2234556888888864 689
Q ss_pred EEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEcceEEeeeEE
Q 018109 180 KAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVV 258 (360)
Q Consensus 180 ~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~i 258 (360)
.+|+.+++|.|+|+|++|+++++.++...+...+++..+.+.+.+.+.+|+++ .++.+.++.|+++|.|.+ .+.+|+|
T Consensus 233 ~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~-~v~~s~i 311 (380)
T PRK05293 233 YAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYG-TVEHSVL 311 (380)
T ss_pred EEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEecCEECCCCEEcc-eecceEE
Confidence 99999999999999999999999999877666777788888888889999999 678889999999999974 5779999
Q ss_pred ecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCc
Q 018109 259 GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 338 (360)
Q Consensus 259 g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~ 338 (360)
|++|.|+++|.|.+++++.+ +.|+++|.|.+|+|+++++|++++.+.+...
T Consensus 312 g~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~---------- 362 (380)
T PRK05293 312 FQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGVIIGGGKE---------- 362 (380)
T ss_pred cCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCCEEcCCCc----------
Confidence 99999999999999998776 9999999999999999999999999987532
Q ss_pred eEEeCCeEEEcCCcEeCCCccC
Q 018109 339 FYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 339 ~~i~~~~~~ig~~~~i~~g~~i 360 (360)
...+||+++.|+++++|
T Consensus 363 -----~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 363 -----VITVIGENEVIGVGTVI 379 (380)
T ss_pred -----eeEEEeCCCCCCCCcEe
Confidence 13456777777777664
No 7
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.6e-38 Score=310.71 Aligned_cols=290 Identities=32% Similarity=0.596 Sum_probs=232.3
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
|++|||+||+++.+++++. ..++|||++||++++.|+.+++++|+++++++|+++..++.+.+..||++.+|++++|
T Consensus 97 ~~lGta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v 173 (407)
T PRK00844 97 WYLGSADAIYQSLNLIEDE---DPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRI 173 (407)
T ss_pred cccCCHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCE
Confidence 4689999999999999630 1246999999999999999999999999999999988765444788999999888999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhC---CCCcchhhcccccccccCceE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFLK 180 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~---~~~~~~~~~~l~~~i~~~~I~ 180 (360)
..|.|||..+... . . ...+.++++|+|+|++++|..++++.. ....++..++++.++++++++
T Consensus 174 ~~~~eKp~~~~~~--------~----~--~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~ 239 (407)
T PRK00844 174 RGFLEKPADPPGL--------P----D--DPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAY 239 (407)
T ss_pred EEEEECCCCcccc--------c----C--CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEE
Confidence 9999999753210 0 0 001468999999999999866565421 123455668999999888999
Q ss_pred EEEe------------CCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-cCc----eeeceEEC
Q 018109 181 AYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDS----KIVDSIIS 243 (360)
Q Consensus 181 ~~~~------------~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~----~i~~~~i~ 243 (360)
+|.+ ++||.|+|+|++|+++++.+|...+......+..++++.....+|+.+ .++ .+.++.|+
T Consensus 240 ~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 319 (407)
T PRK00844 240 VYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVS 319 (407)
T ss_pred EEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEc
Confidence 9976 599999999999999999999876655566667777777777777776 332 46789999
Q ss_pred CCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEE
Q 018109 244 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVII 323 (360)
Q Consensus 244 ~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~ 323 (360)
++|.|+++.|.+|+||++|.|+++|+|++++++.+ |.|+++|.|.+|+|+++|+|++++++
T Consensus 320 ~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~i 380 (407)
T PRK00844 320 AGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGAVVRRAILDKNVVVPPGATI 380 (407)
T ss_pred CCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCCEEEeeEECCCCEECCCCEE
Confidence 99999978899999999999999999999987765 99999999999999999999999999
Q ss_pred ecCCCcccccccCCceEEe-CCeEEEcCCcEe
Q 018109 324 ANSEGIQEADRSAEGFYIR-SGVTVILKNSVI 354 (360)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~-~~~~~ig~~~~i 354 (360)
++.. ... +.+++|. .+.++|+++++|
T Consensus 381 ~~~~--~~~---~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 381 GVDL--EED---RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CCCc--ccc---ccceEeccceEEEeCCCCCC
Confidence 8731 111 3356665 666787777654
No 8
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.1e-37 Score=308.45 Aligned_cols=292 Identities=32% Similarity=0.626 Sum_probs=233.3
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 102 (360)
+|++|||+|++++.+++++ ..+++|||++||++++.||.+++++|+++++++|+++.+++.+.+..||++.+|++++
T Consensus 108 ~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~ 184 (425)
T PRK00725 108 NWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDR 184 (425)
T ss_pred ccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCC
Confidence 4568999999999999963 1136899999999999999999999999999999998877544578999999988899
Q ss_pred eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhC---CCCcchhhcccccccccCce
Q 018109 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFL 179 (360)
Q Consensus 103 V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~---~~~~~~~~~~l~~~i~~~~I 179 (360)
|+.|.|||..+.. . +.. ..+.++++|+|+|++++|..++++.. ....++..++++.+++++++
T Consensus 185 V~~~~EKp~~~~~--~----------~~~--~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v 250 (425)
T PRK00725 185 ITAFVEKPANPPA--M----------PGD--PDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKV 250 (425)
T ss_pred EEEEEECCCCccc--c----------ccC--ccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcE
Confidence 9999999864320 0 000 01468999999999998866665421 12345667899999998999
Q ss_pred EEEEeC-----------CceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-c---C--ceeeceEE
Q 018109 180 KAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-D---D--SKIVDSII 242 (360)
Q Consensus 180 ~~~~~~-----------g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~---~--~~i~~~~i 242 (360)
++|.++ +||.|+|+|++|+++++.++...+...+.+...++++.....+|+.+ . + +.+.+++|
T Consensus 251 ~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i 330 (425)
T PRK00725 251 YAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLV 330 (425)
T ss_pred EEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEE
Confidence 999985 69999999999999999999876655566666677776777777766 1 2 35679999
Q ss_pred CCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcE
Q 018109 243 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVI 322 (360)
Q Consensus 243 ~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~ 322 (360)
+++|.|.++.|.+|+||++|.|+++|.|.+++++.+ +.||++|.|.+|+|+++|+|+++++
T Consensus 331 ~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~~~i~~~ii~~~~~i~~~~~ 391 (425)
T PRK00725 331 SGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRSCRLRRCVIDRGCVIPEGMV 391 (425)
T ss_pred cCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCCCEEeeEEECCCCEECCCCE
Confidence 999999888899999999999999999999998876 9999999999999999999999999
Q ss_pred EecCCCcccccccCCceEE-eCCeEEEcCCcEeC
Q 018109 323 IANSEGIQEADRSAEGFYI-RSGVTVILKNSVIT 355 (360)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~i-~~~~~~ig~~~~i~ 355 (360)
++......+ ++..| ..|.++|++++.+-
T Consensus 392 i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 392 IGEDPEEDA-----KRFRRSEEGIVLVTREMLDK 420 (425)
T ss_pred ECCCCCCCC-----ceeEecCccEEEECCCcccc
Confidence 976533222 12333 34667888876543
No 9
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-36 Score=293.74 Aligned_cols=289 Identities=28% Similarity=0.449 Sum_probs=226.9
Q ss_pred CCCCcEEEeeCcccCCCCCCcc------------------ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHH
Q 018109 3 QLTGNSQVLAATQTPGEAGKRW------------------FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYM 64 (360)
Q Consensus 3 ~~~g~~~i~~~~~~~~~~~~~~------------------~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~ 64 (360)
+.+|+.+++++++|+++++.+| ++|||++|+++.+++.. ++|+|++||++++.|+.
T Consensus 43 ~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~------~~f~v~~GDv~~~~dl~ 116 (358)
T COG1208 43 AAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGG------DDFLVLNGDVLTDLDLS 116 (358)
T ss_pred HHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcCC------CcEEEEECCeeeccCHH
Confidence 3589999999999999976554 37999999999999973 89999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCC-CceEEEEecCCccccccccccccccccccccccccCceeeeeE
Q 018109 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 143 (360)
Q Consensus 65 ~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GI 143 (360)
.++++|+++.+.++++...++. +..||++..+.+ ++|.+|.|||..... .+.++++|+
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~--~~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Gi 175 (358)
T COG1208 117 ELLEFHKKKGALATIALTRVLD--PSEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGI 175 (358)
T ss_pred HHHHHHHhccCccEEEEEecCC--CCcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEE
Confidence 9999999998889999988887 478999888744 599999999953110 257999999
Q ss_pred EEEeHHHHHHHHHhhCCCCcchhhcccccccccCc-eEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCc---
Q 018109 144 YLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP--- 219 (360)
Q Consensus 144 yifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~-I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~--- 219 (360)
|+|+|++|+++ +.. ...++..+++|.+++.+. +++|.++++|+|+|+|++|+++++.++.......+......
T Consensus 176 yi~~~~v~~~i-~~~--~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~ 252 (358)
T COG1208 176 YIFDPEVFDYI-EKG--ERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVI 252 (358)
T ss_pred EEECHHHhhhc-ccC--CcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999843 332 244666789999998776 99999999999999999999999999964421111000000
Q ss_pred eeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcc
Q 018109 220 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 297 (360)
Q Consensus 220 v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
+.. +.+.+ +++|+++|.|+ ++.|. .++||++|.|+.++.|.+|+++.+
T Consensus 253 ~~~-~~i~g----------p~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~------------------- 302 (358)
T COG1208 253 IRS-AYIIG----------PVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN------------------- 302 (358)
T ss_pred ccc-ceEeC----------CEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------
Confidence 111 33333 55666666666 45554 699999999999999999999997
Q ss_pred eEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 298 VGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 298 ~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
|.|++++.|.+|+||.+|.||+++ . +.. +.+++++.+.+++ ++++++.+.++++
T Consensus 303 ~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d-~~~g~~~~i~~g~-~~~~~~~~~~~~~ 356 (358)
T COG1208 303 VVIGHGSYIGDSIIGENCKIGASL-I-----IGD-VVIGINSEILPGV-VVGPGSVVESGEI 356 (358)
T ss_pred CEECCCCEEeeeEEcCCcEECCce-e-----ecc-eEecCceEEcCce-EeCCCccccCccc
Confidence 999999999999999999999922 2 555 6666666666664 4577777776654
No 10
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=5.4e-35 Score=283.86 Aligned_cols=266 Identities=45% Similarity=0.796 Sum_probs=213.5
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
|++||+++++++.+++++ ..+++|+|++||++++.++.++++.|+++++++++++.+++.+.+..||++.+|++++|
T Consensus 91 ~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v 167 (361)
T TIGR02091 91 WYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRI 167 (361)
T ss_pred cccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCE
Confidence 458999999999999863 11368999999999999999999999998888898888776545678999999878899
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhC---CCCcchhhcccccccccCceE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFLK 180 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~---~~~~~~~~~~l~~~i~~~~I~ 180 (360)
..|.|||..+... ... ...+++++|+|+|+|++|..+++... ....++..++++.++++++++
T Consensus 168 ~~~~ekp~~~~~~------------~~~--~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~ 233 (361)
T TIGR02091 168 VDFEEKPANPPSI------------PGM--PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQ 233 (361)
T ss_pred EEEEECCCCcccc------------ccc--ccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceE
Confidence 9999998543210 000 01238999999999999866665532 123355668899999889999
Q ss_pred EEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceecc-CCCCCCcee-cCceeeceEECCCCEEcceEEeeeEE
Q 018109 181 AYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTS-RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVV 258 (360)
Q Consensus 181 ~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~-~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~i 258 (360)
+|.++++|.|+|||++|+++++.++.+.+..........+... ..+.+++++ .++.+.++.||++|.|+++.+.+++|
T Consensus 234 ~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~~v~~s~i 313 (361)
T TIGR02091 234 AYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVL 313 (361)
T ss_pred EEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCCEEEccEE
Confidence 9999999999999999999999999876544344444555433 345666677 44577899999999999658889999
Q ss_pred ecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEec
Q 018109 259 GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 259 g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~ 325 (360)
|++|.|+++|+|.+++++.+ +.||++|.|.+|+||+++.|++++.++|
T Consensus 314 ~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 314 GIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 99999999999999888775 8999999999999999999999999875
No 11
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=4.6e-34 Score=278.23 Aligned_cols=280 Identities=21% Similarity=0.383 Sum_probs=218.8
Q ss_pred CCCCcEEEeeCcccCCC-CCCcc-------------------------c--cccHHHHHHHhHhhcCCCCCCCCeEEEEc
Q 018109 3 QLTGNSQVLAATQTPGE-AGKRW-------------------------F--QGTADAVRQFHWLFEDPRNKVIEDVLILS 54 (360)
Q Consensus 3 ~~~g~~~i~~~~~~~~~-~~~~~-------------------------~--lGTa~al~~a~~~i~~~~~~~~~~fLVv~ 54 (360)
..+|+++|+++.+|+++ ++.+| . .|++++++++++++++ ..+++|||++
T Consensus 45 ~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~---~~~~~~lvln 121 (369)
T TIGR02092 45 VNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKR---STSEYTVVLN 121 (369)
T ss_pred hccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccChHHHHHHHHHHHHh---CCCCEEEEEC
Confidence 35789999999999765 33211 2 2666779899998852 0137899999
Q ss_pred CceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCccc-EEEECCCCceEEEEecCCcccccccccccccccccccccc
Q 018109 55 GDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFG-LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 133 (360)
Q Consensus 55 gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g-~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~ 133 (360)
||+++++||.+++++|+++++++|+++.+++.+.+..|| .+..++++++..+.+++....
T Consensus 122 GD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~------------------- 182 (369)
T TIGR02092 122 SHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEE------------------- 182 (369)
T ss_pred CCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCC-------------------
Confidence 999999999999999999999999999887643356785 456766678887754332211
Q ss_pred ccCceeeeeEEEEeHHHHHHHHHhhCCC-CcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCC
Q 018109 134 EKPYIASMGVYLFKKEILLNLLRWRFPT-ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFS 212 (360)
Q Consensus 134 ~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~ 212 (360)
...+++|+|+|++++|..++++..+. ...+..++++.++++.++++|..+++|.|+|||++|+++++++|+.+....
T Consensus 183 --~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~ 260 (369)
T TIGR02092 183 --EENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQS 260 (369)
T ss_pred --cceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhh
Confidence 24578999999999886666543221 223345788888878899999999999999999999999999998764322
Q ss_pred cc-CCCCceeccCCCCCCcee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhh
Q 018109 213 FY-DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 290 (360)
Q Consensus 213 ~~-~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 290 (360)
.. ....+++....+.+|+++ +++.+.+|.||++|.|+ +.+.+|+|+++|.|+++|.|.+++++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~------------ 327 (369)
T TIGR02092 261 LFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR------------ 327 (369)
T ss_pred hcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC------------
Confidence 22 223345555556789999 67888999999999997 5688999999999999999999998876
Q ss_pred hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC
Q 018109 291 LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
+.|++++.+.+|+||++++|++++.+.+.
T Consensus 328 -------~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 328 -------TVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred -------CEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 99999999999999999999999999765
No 12
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.8e-33 Score=276.98 Aligned_cols=333 Identities=20% Similarity=0.256 Sum_probs=220.0
Q ss_pred CCCcEEEeeCcccCCCCC--------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAG--------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFV 67 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~--------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll 67 (360)
.+|+.+++++.++.++.. ++..+||+++|+++++++++ ..++|+|++||. +.+.++++++
T Consensus 43 ~~gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~ 118 (459)
T PRK14355 43 EAGAGRIVLVVGHQAEKVREHFAGDGDVSFALQEEQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGML 118 (459)
T ss_pred hcCCCeEEEEECCCHHHHHHHhccCCceEEEecCCCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHH
Confidence 357888888887754421 23357999999999999963 136899999998 5677899999
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEe
Q 018109 68 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 147 (360)
Q Consensus 68 ~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs 147 (360)
+.|++++++++++..+.++ +..||.+.+|++++|..+.|||.....+ ..+.++++|+|+|+
T Consensus 119 ~~~~~~~~~~~v~~~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~ 179 (459)
T PRK14355 119 AAHRATGAAVTVLTARLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVE 179 (459)
T ss_pred HHHHhcCCcEEEEEEEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEe
Confidence 9999888888888877766 5679998888888999999987432110 01468899999999
Q ss_pred HHHHHHHHHhhCCC---Ccchhhccccccccc-CceEEEEeCCc--eeecCCHHHHHHHHHHhhcCC------CCCCccC
Q 018109 148 KEILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYD 215 (360)
Q Consensus 148 ~~vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~~~g~--w~digtp~~~~~a~~~~l~~~------~~~~~~~ 215 (360)
+++|..+++...+. ......+.++.++++ .++.+|+++++ |+|+|+|++|+++++.++... ....+++
T Consensus 180 ~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~ 259 (459)
T PRK14355 180 AAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLID 259 (459)
T ss_pred HHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC
Confidence 99765656543221 112235677877765 57999999887 899999999999987655421 1112334
Q ss_pred CCC-ceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HHHHhh
Q 018109 216 ATK-PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVASL 290 (360)
Q Consensus 216 ~~~-~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~ 290 (360)
+.. .+...+.|++++.+ +++.|. ++.||++|.|+ +++|.+++||++|.|++++.+.++++ +++..... ..+..+
T Consensus 260 ~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i-~~~~~ig~~~~i~~~ 338 (459)
T PRK14355 260 PETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVV-GDDVAIGPMAHLRPG 338 (459)
T ss_pred CCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEE-CCCCEECCCCEECCC
Confidence 432 34444555555555 334443 56666666666 66666666666666666666654433 22211110 111110
Q ss_pred --hhCCC--------cceEECCC------CeEeeeEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCe-----EEE
Q 018109 291 --LAEGR--------VPVGIGEN------TKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGV-----TVI 348 (360)
Q Consensus 291 --~~~~~--------~~~~ig~~------~~i~~~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~-----~~i 348 (360)
++++. ..+.||.+ +++.+++||++|.||+++++.++++...+ ..|||+++|+.++ +.|
T Consensus 339 ~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~i 418 (459)
T PRK14355 339 TELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTV 418 (459)
T ss_pred CEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEE
Confidence 11110 00222322 33456788999999999998887766554 4788888888887 367
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|+++.|+||++|
T Consensus 419 g~~~~i~a~s~v 430 (459)
T PRK14355 419 GRNSLIAAGTTV 430 (459)
T ss_pred CCCCEECCCCEE
Confidence 888888888865
No 13
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-32 Score=275.12 Aligned_cols=331 Identities=16% Similarity=0.207 Sum_probs=225.9
Q ss_pred CCcEEEeeCcccCCCCC---------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHH
Q 018109 5 TGNSQVLAATQTPGEAG---------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFV 67 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~---------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll 67 (360)
.|+.+++++.++..++. +++.+||+++++++..++.+ ..+++|+|++||. +...++++|+
T Consensus 45 ~g~~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li 121 (482)
T PRK14352 45 LAPQHLVVVVGHDRERVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLV 121 (482)
T ss_pred cCCCcEEEEECCCHHHHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHH
Confidence 46667766665543211 23457999999999998853 1236799999998 3466799999
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEe
Q 018109 68 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 147 (360)
Q Consensus 68 ~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs 147 (360)
+.|+++++.++++..+..+ +..||.+..+++++|.++.|||+....+ ....++++|+|+|+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~ 182 (482)
T PRK14352 122 ATHTAEGNAVTVLTTTLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFD 182 (482)
T ss_pred HHHHhcCCeEEEEEeecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEE
Confidence 9999888888888777766 6789988888889999999998753210 01357899999999
Q ss_pred HHHHHHHHHhhCCCC---cchhhccccccccc-CceEEEEeCCceeecCCHHHH------HHHHHHhhcCC---------
Q 018109 148 KEILLNLLRWRFPTA---NDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSF------FEANLALTAHP--------- 208 (360)
Q Consensus 148 ~~vl~~ll~~~~~~~---~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~------~~a~~~~l~~~--------- 208 (360)
+++|..++++..... ..+..++++.+++. .++++|+++++|.|+|+++.+ ..+++.++...
T Consensus 183 ~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~ 262 (482)
T PRK14352 183 AAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVD 262 (482)
T ss_pred HHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC
Confidence 999977665543211 12235677777775 589999999999999999887 55555544332
Q ss_pred CCCCccC------------CCCceeccCCCCCCcee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEE
Q 018109 209 PMFSFYD------------ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMM 275 (360)
Q Consensus 209 ~~~~~~~------------~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~ 275 (360)
+...+++ +.+.+...+.|+++|.+ .++.|.+++|+++|.|.++.+.+++||+++.|++++.+...++
T Consensus 263 ~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~v 342 (482)
T PRK14352 263 PATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTV 342 (482)
T ss_pred CCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcE
Confidence 1112222 22333333444455555 3556666777777777655566777777777777777766556
Q ss_pred ECCcccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCeE-----E
Q 018109 276 LGADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 276 ~~~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-----~ 347 (360)
+|++-.... +.++.. +.++ +.|++.+.+.+++||++|+||+++++.++....++ ..|||+++|+.+++ .
T Consensus 343 Ig~~~~ig~~~~~~~~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~ 419 (482)
T PRK14352 343 LGEEGKLGAFVETKNATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVT 419 (482)
T ss_pred EcCCCEECCcEEEcccEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCE
Confidence 554311111 111111 2222 66666667788999999999999999887655444 48888888887775 7
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||+++.||+|++|
T Consensus 420 Ig~~~~igags~v 432 (482)
T PRK14352 420 VGDGAYTGAGTVI 432 (482)
T ss_pred ECCCcEECCCCEE
Confidence 7899999999864
No 14
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.1e-32 Score=274.98 Aligned_cols=329 Identities=22% Similarity=0.258 Sum_probs=223.7
Q ss_pred CCCcEEEeeCcccCCCCC-------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAG-------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQ 68 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~-------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~ 68 (360)
.+|+++++++.++..+.. +++++||+++++.+.++++. .+++|+|++||. +.+.++++|++
T Consensus 47 ~~gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~~~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~ 122 (481)
T PRK14358 47 DLGARKIVVVTGHGAEQVEAALQGSGVAFARQEQQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVA 122 (481)
T ss_pred hCCCCeEEEEeCCCHHHHHHHhccCCcEEecCCCcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHH
Confidence 358888888888754422 23467999999999998852 135799999998 55777999999
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
+|+++++++|+++.++++ +++||++..|++++|.+|.|||+.+..+ ....++++|+|+|++
T Consensus 123 ~~~~~~~~~ti~~~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~ 183 (481)
T PRK14358 123 DHRAQGSAMTILTGELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDA 183 (481)
T ss_pred HHHhcCCeEEEEEEEcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEch
Confidence 999999999999888876 5679999998889999999998753210 013468999999996
Q ss_pred HHHHHHHHhhCC----CCcchhhccccccccc-CceEEEEeCCceeecCCHHHHHHHHHH-hhcCC--------------
Q 018109 149 EILLNLLRWRFP----TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLA-LTAHP-------------- 208 (360)
Q Consensus 149 ~vl~~ll~~~~~----~~~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~~~-~l~~~-------------- 208 (360)
++++ +++...+ .... ..++++.++++ .++.+|+++++|..++....+..+++. +++..
T Consensus 184 ~~~~-~~~~i~~~~~~ge~~-l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 261 (481)
T PRK14358 184 RAPE-LARRIGNDNKAGEYY-LTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQD 261 (481)
T ss_pred HHHH-HHHhcCCCccCCeEE-HHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEec
Confidence 6532 2333211 1222 34677777765 579999999888887776656444432 22110
Q ss_pred CCCC------------ccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceE
Q 018109 209 PMFS------------FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTM 274 (360)
Q Consensus 209 ~~~~------------~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~ 274 (360)
+... .+++.+.+...+.|++++.| .+|.|.+++|+++|.|+ ++.+.+++||+++.|++++.+...+
T Consensus 262 ~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~ 341 (481)
T PRK14358 262 PGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGT 341 (481)
T ss_pred CCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCc
Confidence 1111 11222222223333444444 34566677777777777 6777777777777777777777666
Q ss_pred EECCcccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccccc-ccCCceEEeCCeE-----
Q 018109 275 MLGADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD-RSAEGFYIRSGVT----- 346 (360)
Q Consensus 275 ~~~~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~-~~~~~~~i~~~~~----- 346 (360)
++|++-.+.. +++.+. +..| +++|+.+.+.+++||++|.||.++++.|+....++. .||++++|+.+++
T Consensus 342 ~Ig~~~~Ig~~~~i~~~~i~~~---~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~ 418 (481)
T PRK14358 342 VLGEGVHIGNFVETKNARLDAG---VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPR 418 (481)
T ss_pred EECCCCEECCCEEECCceecCC---cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCc
Confidence 6665533322 222221 2333 556666666789999999999999999987666654 8889988887773
Q ss_pred EEcCCcEeCCCccC
Q 018109 347 VILKNSVITDGFVI 360 (360)
Q Consensus 347 ~ig~~~~i~~g~~i 360 (360)
+||+++.|++|++|
T Consensus 419 ~Ig~~~~i~~gs~v 432 (481)
T PRK14358 419 VVGDAAFIAAGSAV 432 (481)
T ss_pred EECCCCEECCCCEE
Confidence 67889999988864
No 15
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=3.4e-31 Score=256.57 Aligned_cols=230 Identities=21% Similarity=0.316 Sum_probs=159.7
Q ss_pred CCcEEEeeCccc-CCCCC------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHH
Q 018109 5 TGNSQVLAATQT-PGEAG------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65 (360)
Q Consensus 5 ~g~~~i~~~~~~-~~~~~------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ 65 (360)
.|+++++++.++ ..+.. +++.+||+++++++.+++++ ++|++++||.+++.++.+
T Consensus 43 ~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~~------~~~li~~gD~~~~~~l~~ 116 (353)
T TIGR01208 43 AGITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGD------DDFVVYLGDNLIQDGISR 116 (353)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhcCC------CCEEEEECCeecCccHHH
Confidence 577788777777 33210 22358999999999999863 789999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEE
Q 018109 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 145 (360)
Q Consensus 66 ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyi 145 (360)
++++|+++++++++++.+.++ +..||++..+++++|.+|.|||..+. +.+.++|+|+
T Consensus 117 l~~~~~~~~~d~ti~~~~~~~--~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~ 173 (353)
T TIGR01208 117 FVKSFEEKDYDALILLTKVRD--PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYM 173 (353)
T ss_pred HHHHHHhcCCCcEEEEEECCC--hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEE
Confidence 999999999999999988776 57899888875678999999987542 4578999999
Q ss_pred EeHHHHHHHHHhhCCC---Ccchhhccccccccc-CceEEEEeCCceeecCCHHHHHHHHHHhhcCCCCCCccCCCCcee
Q 018109 146 FKKEILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 221 (360)
Q Consensus 146 fs~~vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~ 221 (360)
|++.+++. +++..+. ... ..++++.++++ .++.+|.++++|.|+|||++|+++++.++.+... .+ . .+.
T Consensus 174 ~~~~l~~~-l~~~~~~~~~e~~-l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~-~---~i~ 246 (353)
T TIGR01208 174 FRPLIFEA-IKNIKPSWRGELE-ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EV-Q---GVD 246 (353)
T ss_pred ECHHHHHH-HHhcCCCCCCcEE-HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-cc-C---CcC
Confidence 99987765 4543221 112 34677777765 5799999999999999999999999999985421 11 0 134
Q ss_pred ccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEE
Q 018109 222 TSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHL 270 (360)
Q Consensus 222 ~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i 270 (360)
+.+.+.+|+.+ +++.|.++.|+++|.|+ ++.|.+++|+++|.|+++|.|
T Consensus 247 ~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i 297 (353)
T TIGR01208 247 DESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVI 297 (353)
T ss_pred CCCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEE
Confidence 44445555544 33444444443333333 333333344444444444433
No 16
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.98 E-value=1.6e-31 Score=267.37 Aligned_cols=326 Identities=19% Similarity=0.220 Sum_probs=223.7
Q ss_pred CCcEEEeeCcccCCCCC-------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAG-------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQN 69 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~-------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~ 69 (360)
.|+.+++++.++..+.. ++..+||+++++.+..++.+ +++|++++||. +.+.++.++++.
T Consensus 46 ~gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~~~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~ 120 (456)
T PRK09451 46 LGAQHVHLVYGHGGDLLKQTLADEPLNWVLQAEQLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDA 120 (456)
T ss_pred cCCCcEEEEECCCHHHHHHhhccCCcEEEECCCCCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHH
Confidence 47778887777643321 12257999999999998853 47899999998 567789999998
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|++.+ +++++.++++ +..||++.. ++++|.+|.|||.....+ ....++++|+|+|+++
T Consensus 121 ~~~~~--~~i~~~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~ 178 (456)
T PRK09451 121 KPQGG--IGLLTVKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGA 178 (456)
T ss_pred hhcCC--EEEEEEEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHH
Confidence 86544 4566666665 567998754 478999999998642210 0135789999999999
Q ss_pred HHHHHHHhhCCC---Ccchhhccccccccc-CceEEEE------eCCc--eeecCCHHHHHHHHH--HhhcCC----CC-
Q 018109 150 ILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYL------FNDY--WEDIGTIRSFFEANL--ALTAHP----PM- 210 (360)
Q Consensus 150 vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~------~~g~--w~digtp~~~~~a~~--~~l~~~----~~- 210 (360)
.|.++++...+. ...+..++++.++++ .++.+|. +.|| |.|++++++|++++. .++... ++
T Consensus 179 ~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~ 258 (456)
T PRK09451 179 DLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPA 258 (456)
T ss_pred HHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCC
Confidence 887766653221 112345788888875 6899986 3566 788999999999874 232211 11
Q ss_pred ------------CCccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEE
Q 018109 211 ------------FSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMML 276 (360)
Q Consensus 211 ------------~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~ 276 (360)
-..+++.+.+...+.+++++.| .++.|.++.|+++|.|+ ++.+.+++||+++.|++++.|...+.+
T Consensus 259 ~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i 338 (456)
T PRK09451 259 RFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAEL 338 (456)
T ss_pred EEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEE
Confidence 1133444555555566666666 56777788888888888 777777778877777777777654444
Q ss_pred CCcccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EE
Q 018109 277 GADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VI 348 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~i 348 (360)
+++-...+ +++... +.+| +.+++.+.+++|+||++|.||+++++.+.++..+ ..+|+|+++|+.+++ .|
T Consensus 339 ~~~~~ig~~~~i~~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~i 415 (456)
T PRK09451 339 AEGAHVGNFVEMKKARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTV 415 (456)
T ss_pred CCCceeccceeeeceeeCCC---CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEE
Confidence 44311111 222211 3333 5556666667889999999999999988776555 358899999887774 66
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|+++.|++|++|
T Consensus 416 g~~~~i~~gs~v 427 (456)
T PRK09451 416 GKGATIGAGTTV 427 (456)
T ss_pred CCCCEECCCCEE
Confidence 788888888764
No 17
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.98 E-value=4.6e-31 Score=263.39 Aligned_cols=328 Identities=20% Similarity=0.239 Sum_probs=220.2
Q ss_pred CCCcEEEeeCcccCCCCCC-------------ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAGK-------------RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQ 68 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~~-------------~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~ 68 (360)
..|+.+++++.++..+... +.++||+++++++.+++++ .++|++++||. +...+++++++
T Consensus 40 ~~g~~~iiiv~~~~~~~i~~~~~~~~i~~~~~~~~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~ 114 (451)
T TIGR01173 40 ALGPQKIHVVYGHGAEQVRKALANRDVNWVLQAEQLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLE 114 (451)
T ss_pred hCCCCeEEEEECCCHHHHHHHhcCCCcEEEEcCCCCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHH
Confidence 3567777777766543211 1246999999999999863 36899999998 45667899999
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
.|++. .+++++.++++ +..||.+..|++++|..+.|||...... ....++++|+|+|++
T Consensus 115 ~~~~~--~~~~~~~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~ 173 (451)
T TIGR01173 115 AHRQN--GITLLTAKLPD--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDG 173 (451)
T ss_pred HHhhC--CEEEEEEecCC--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeH
Confidence 98764 36677776654 5679998888788999999997643210 013578999999999
Q ss_pred HHHHHHHHhhCCC---Ccchhhccccccccc-CceEEEEeCCc--eeecCCHHHHHHHHHHhhcCC-------------C
Q 018109 149 EILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP-------------P 209 (360)
Q Consensus 149 ~vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~~~g~--w~digtp~~~~~a~~~~l~~~-------------~ 209 (360)
++|..++++.... ...+..++++.++++ .++.+|+++++ |.++++|+++.+++..+..+. +
T Consensus 174 ~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (451)
T TIGR01173 174 AALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDP 253 (451)
T ss_pred HHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecC
Confidence 9876666553221 111234667777765 57999999887 899999999988766543210 1
Q ss_pred CC------------CccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEE
Q 018109 210 MF------------SFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMM 275 (360)
Q Consensus 210 ~~------------~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~ 275 (360)
.. ..+++.+.+...+.|++++.| .++.+.++.|+++|.|+ ++.+.+++||++|.|+++++|.+.++
T Consensus 254 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ 333 (451)
T TIGR01173 254 ARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSV 333 (451)
T ss_pred CeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCE
Confidence 00 122333334344445555555 45666778888888888 77777778888888877777775545
Q ss_pred ECCcccchh-HHHHh-hhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCeE-----E
Q 018109 276 LGADFYETD-AEVAS-LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 276 ~~~~~~~~~-~~~~~-~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-----~ 347 (360)
++++-.+.. +.++. .+++| +.|++.+.+.+|.||++|.||+++++.+.+...++ ..|+|+++|+.+++ .
T Consensus 334 i~~~~~Ig~~~~i~~~~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ 410 (451)
T TIGR01173 334 LGAGVHIGNFVETKNARIGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVK 410 (451)
T ss_pred ECCCcEEccceeecCcEECCC---cEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcE
Confidence 554311111 11111 12222 44455555567888899999999988887665554 58888888887763 6
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||+++.|++|++|
T Consensus 411 ig~~~~i~~g~~v 423 (451)
T TIGR01173 411 VGDGATIAAGSTV 423 (451)
T ss_pred ECCCCEEccCCEE
Confidence 7899999999875
No 18
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=7e-30 Score=253.51 Aligned_cols=297 Identities=24% Similarity=0.336 Sum_probs=220.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
++||+++++++.. . .++||+++||..+. ..+.++.+.+.++++++++.++++ +..||.+..+ +++|.
T Consensus 79 ~~gt~~al~~~~~--~------~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~--~~~~g~v~~d-~g~v~ 145 (430)
T PRK14359 79 YPGTGGALMGIEP--K------HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD--PKGYGRVVIE-NGQVK 145 (430)
T ss_pred CCCcHHHHhhccc--C------CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC--CccCcEEEEc-CCeEE
Confidence 4799999987532 1 37999999998331 234555566677888888888776 5679987775 68999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC---Ccchhhcccccccc-cCceE
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLK 180 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~ 180 (360)
.+.|+|...... ....+.++|+|+|++++|.++++..... ...+..+.++.+++ +.++.
T Consensus 146 ~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~ 208 (430)
T PRK14359 146 KIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIK 208 (430)
T ss_pred EEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEE
Confidence 999988542100 0135789999999999998765542211 11122345555565 47899
Q ss_pred EEEeC-CceeecCCHHHHHHHHHHhhcCC-------------CCCCccCCCCceeccCCCCCCcee-cCceeeceEECCC
Q 018109 181 AYLFN-DYWEDIGTIRSFFEANLALTAHP-------------PMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHG 245 (360)
Q Consensus 181 ~~~~~-g~w~digtp~~~~~a~~~~l~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~ 245 (360)
+|..+ ++|.|+++|++|.+++..++.+. +...++++++.+...+.+++++.| .++.+.++.|+++
T Consensus 209 ~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~ 288 (430)
T PRK14359 209 AVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAH 288 (430)
T ss_pred EEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCC
Confidence 99986 68999999999999986655331 123345666677777788888888 6778889999999
Q ss_pred CEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEec
Q 018109 246 SFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 246 ~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~ 325 (360)
|.|.++.+.+++||+++.|++++.|.++ ++|+ +++ |..++.+| ++||+++.|.+|+||++|.||+++++.+
T Consensus 289 ~~I~~~~i~~~~ig~~~~i~~~~~i~~~-~ig~-~~~----i~~~~~~~---~~i~~~~~i~d~~Ig~~~~ig~~~~~~~ 359 (430)
T PRK14359 289 SVIEESIIENSDVGPLAHIRPKSEIKNT-HIGN-FVE----TKNAKLNG---VKAGHLSYLGDCEIDEGTNIGAGTITCN 359 (430)
T ss_pred CEEeccEEeCCEECCCCEECCCcEEecc-EEcC-cEE----EcccEecc---ccccccccccCCEECCCCEECCCceEcc
Confidence 9998888899999999999999999754 5564 233 33333344 8999999999999999999999999998
Q ss_pred CCCcccc-cccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 326 SEGIQEA-DRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 326 ~~~~~~~-~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
+.+..++ ..|||+++||.+++ +||+++.||+|++|
T Consensus 360 ~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 360 YDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred ccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 8766654 47888888888873 77889999998875
No 19
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=8.3e-30 Score=254.37 Aligned_cols=305 Identities=22% Similarity=0.266 Sum_probs=203.2
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 101 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 101 (360)
..+||+++++++..++++ +++|++++||. +.+.+++++++.|+++++++|+++.++++ +..||.+..+ ++
T Consensus 71 ~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~--~~~~g~v~~d-~g 142 (448)
T PRK14357 71 EQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLED--PTGYGRIIRD-GG 142 (448)
T ss_pred CCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCC--CCCcEEEEEc-CC
Confidence 357999999999999863 47999999997 67788999999999999999999988876 6789998886 67
Q ss_pred ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC---cchhhcccccccccCc
Q 018109 102 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA---NDFGSEIIPASANEQF 178 (360)
Q Consensus 102 ~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~---~~~~~~~l~~~i~~~~ 178 (360)
++ .+.|||..+... ...+++++|+|+|++++|.+++++..+.. .....++++.+ .+
T Consensus 143 ~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~ 201 (448)
T PRK14357 143 KY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EK 201 (448)
T ss_pred eE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hh
Confidence 88 888876533210 01357899999999998877665432211 01112444444 35
Q ss_pred eEEEEeCCc--eeecCCHHHHHHHHHHhhcC--------C-----CCCCccCCCCceeccCCCCC------------Cce
Q 018109 179 LKAYLFNDY--WEDIGTIRSFFEANLALTAH--------P-----PMFSFYDATKPIYTSRRNLP------------PSK 231 (360)
Q Consensus 179 I~~~~~~g~--w~digtp~~~~~a~~~~l~~--------~-----~~~~~~~~~~~v~~~~~~~~------------~~~ 231 (360)
+.+|..+++ |.++++|+++..+...+... . +...++++.+.++.++.+.| +|.
T Consensus 202 v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~ 281 (448)
T PRK14357 202 VRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCE 281 (448)
T ss_pred eeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcE
Confidence 888888888 56677999988776544211 0 11123444444444444433 333
Q ss_pred e-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HHHHh-hhhCCCcceEECCCCeEee
Q 018109 232 I-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVAS-LLAEGRVPVGIGENTKIKE 308 (360)
Q Consensus 232 ~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ig~~~~i~~ 308 (360)
+ .++.+.+++|+++|.|..+.+.+++|++++.|++++.|.+.+++|++-...+ +.+.+ .+++| +.+.+.+.+.+
T Consensus 282 I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~---~~~~~~~~~~~ 358 (448)
T PRK14357 282 IGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGEN---TKAQHLTYLGD 358 (448)
T ss_pred ECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCC---cCccccccccC
Confidence 4 3345555667777776655566777888888888877766556665411111 11111 12222 33444445567
Q ss_pred eEecCCCEECCCcEEecCCCcccc-cccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
++||++|.||+++++.++....++ ++|+|+++|+.++ +.||+++.||+|++|
T Consensus 359 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 359 ATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred cEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 888888888888888877665554 5888888888886 367888888888875
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=7.5e-30 Score=255.23 Aligned_cols=330 Identities=18% Similarity=0.221 Sum_probs=208.9
Q ss_pred CCcEEEeeCcccCCCCC-------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-e-eecCHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAG-------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQN 69 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~-------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i-~~~dl~~ll~~ 69 (360)
.|+++++++.++..+.. +++++||+++|+.+.+++++ ...++|++++||. + ...+++++++.
T Consensus 46 ~~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~~~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~ 122 (456)
T PRK14356 46 LFGDNVWTVVGHRADMVRAAFPDEDARFVLQEQQLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKE 122 (456)
T ss_pred cCCCcEEEEECCCHHHHHHhccccCceEEEcCCCCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHH
Confidence 45677777776643321 13357999999999999863 1247899999998 4 45568999988
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|+ +++++++..++++ +..||.+.. ++|+|.++.|||+..... ....+.+.++|+|+|+++
T Consensus 123 ~~--~~~~~l~~~~~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~---------------~~~~~~~~~~GiY~f~~~ 182 (456)
T PRK14356 123 AA--GADLAFMTLTLPD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL---------------HGPETGEVNAGIYYLRLD 182 (456)
T ss_pred Hh--cCCEEEEEEEcCC--CCCceEEEE-cCCeEEEEEECCCCChHH---------------hhhhcCeEEEEEEEEEHH
Confidence 76 5678888888877 568998876 478999999998642100 000145789999999999
Q ss_pred HHHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeCC--ceeecCCHHHHHHHHHHhhcCC-------------CC
Q 018109 150 ILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFND--YWEDIGTIRSFFEANLALTAHP-------------PM 210 (360)
Q Consensus 150 vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~g--~w~digtp~~~~~a~~~~l~~~-------------~~ 210 (360)
+|..+++..... ......++++.+++ +.++.+|+..+ +|++++||++|.+++..++.+. +.
T Consensus 183 ~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~ 262 (456)
T PRK14356 183 AVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPE 262 (456)
T ss_pred HHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCC
Confidence 987766543211 11122355666554 46799999865 5799999999999887665431 11
Q ss_pred CCccCCCCceecc------------CCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEE
Q 018109 211 FSFYDATKPIYTS------------RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMML 276 (360)
Q Consensus 211 ~~~~~~~~~v~~~------------~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~ 276 (360)
...+++.+.+.++ +.|+++|.+ .++.|.+++|+++|.|+ ++.+.+++||++|.|++++.|.+.+++
T Consensus 263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i 342 (456)
T PRK14356 263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVL 342 (456)
T ss_pred cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEE
Confidence 1222233333322 233334444 34555566777777777 566666667766666666666544444
Q ss_pred CCcccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EE
Q 018109 277 GADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VI 348 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~i 348 (360)
|++-.... +.+++. +.+| +.+++++.+.+|+||+++.||+++++.++.+..+ ...|+|+++++.+++ .|
T Consensus 343 g~~~~ig~~~~i~~~~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~i 419 (456)
T PRK14356 343 EEGARVGNFVEMKKAVLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTI 419 (456)
T ss_pred CCCCEecCCceeeeeEecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEE
Confidence 43200000 111111 2222 4455555556677777778888877766654333 347888888887764 67
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|+++.|++|++|
T Consensus 420 g~~~~i~~~~~v 431 (456)
T PRK14356 420 GDGALVGAGSVI 431 (456)
T ss_pred CCCCEEcCCCEE
Confidence 888899988864
No 21
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-30 Score=232.19 Aligned_cols=272 Identities=22% Similarity=0.281 Sum_probs=209.6
Q ss_pred CCCCcEEEeeCcccCCCCCCc-------------------cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCH
Q 018109 3 QLTGNSQVLAATQTPGEAGKR-------------------WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY 63 (360)
Q Consensus 3 ~~~g~~~i~~~~~~~~~~~~~-------------------~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl 63 (360)
+..|+.+|+++-.|..+..+. -++|||++|++-++.|-+ ...+.|+|+|+|+-+++++
T Consensus 47 qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl 123 (407)
T KOG1460|consen 47 QISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPL 123 (407)
T ss_pred cccchhheeEEecccchHHHHHHHHHHhhcccchhhhccCCCCCcccceeehhhHHhc---CCCceEEEEecceecCCcH
Confidence 566788888888886542221 148999999999998865 3468999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEEC-CCCceEEEEecCCccccccccccccccccccccccccCceeeee
Q 018109 64 MDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG 142 (360)
Q Consensus 64 ~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G 142 (360)
++|++.|++.++.+||+..++..+..++||.+..| ..++|+.++|||.... ++.++||
T Consensus 124 ~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCG 182 (407)
T KOG1460|consen 124 QDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCG 182 (407)
T ss_pred HHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hccccee
Confidence 99999999999999999999988778899998877 6789999999998753 5789999
Q ss_pred EEEEeHHHHHHHHHhhC-----------------CCCcc---hhhcccccccccCceEEEEeCCceeecCCHHHHHHHHH
Q 018109 143 VYLFKKEILLNLLRWRF-----------------PTAND---FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANL 202 (360)
Q Consensus 143 Iyifs~~vl~~ll~~~~-----------------~~~~~---~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~ 202 (360)
+|+|++++|+.+ ++.. +.+.+ +..|+|+.++..+.+|+|...++|..+-|+..-+.+++
T Consensus 183 vYlF~~eif~~i-~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~ 261 (407)
T KOG1460|consen 183 VYLFTPEIFNAI-AEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASR 261 (407)
T ss_pred EEEecHHHHHHH-HHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhh
Confidence 999999999754 2211 11112 23467777778899999999999999999999999999
Q ss_pred HhhcCCCCCC--ccCCCCceeccCCCCCCceecCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcc
Q 018109 203 ALTAHPPMFS--FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 280 (360)
Q Consensus 203 ~~l~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~ 280 (360)
.+|++...++ ...+ .-++.+.|-++++|+. ++.+.+.+.|++ ++.||.+++||++++|.+++++.+
T Consensus 262 lYLs~yk~t~p~~Lak--~pgt~a~IigdVyIhP----sakvhptAkiGP----NVSIga~vrvg~GvRl~~sIIl~d-- 329 (407)
T KOG1460|consen 262 LYLSQYKRTHPARLAK--GPGTQAEIIGDVYIHP----SAKVHPTAKIGP----NVSIGANVRVGPGVRLRESIILDD-- 329 (407)
T ss_pred hHHHHHhhcCchhhcC--CCCCCceEEeeeEEcC----cceeCCccccCC----CceecCCceecCCceeeeeeeccC--
Confidence 9987542221 0000 0011122333333322 333444444443 788999999999999999999997
Q ss_pred cchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCC
Q 018109 281 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEG 328 (360)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~ 328 (360)
+.|.+|+.+-+||||+.|.||.++.+.....
T Consensus 330 -----------------~ei~enavVl~sIigw~s~iGrWaRVe~~pv 360 (407)
T KOG1460|consen 330 -----------------AEIEENAVVLHSIIGWKSSIGRWARVEGIPV 360 (407)
T ss_pred -----------------cEeeccceEEeeeecccccccceeeeccccc
Confidence 9999999999999999999999999875433
No 22
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=7.3e-29 Score=248.20 Aligned_cols=331 Identities=21% Similarity=0.270 Sum_probs=214.4
Q ss_pred CCCcEEEeeCcccCCCCC------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHH
Q 018109 4 LTGNSQVLAATQTPGEAG------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQN 69 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~ 69 (360)
..|+.+++++.++..+.. ..+.+||+++++++.+++++ .+++|++++||. +.+.+++++++.
T Consensus 42 ~~gi~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~ 117 (458)
T PRK14354 42 KAGIDKIVTVVGHGAEEVKEVLGDRSEFALQEEQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDF 117 (458)
T ss_pred hCCCCeEEEEeCCCHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHH
Confidence 357888887766644322 22357999999999999863 126799999996 456778999999
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|++.++++|+++.+.++ +..|+.+..|++++|+.+.|||..... . ....++++|+|+|+++
T Consensus 118 ~~~~~~~~t~~~~~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~---------------~--~~~~~~~~Giy~f~~~ 178 (458)
T PRK14354 118 HEEHKAAATILTAIAEN--PTGYGRIIRNENGEVEKIVEQKDATEE---------------E--KQIKEINTGTYCFDNK 178 (458)
T ss_pred HHhcCCceEEEEEEcCC--CCCceEEEEcCCCCEEEEEECCCCChH---------------H--hcCcEEEEEEEEEEHH
Confidence 99888888888877765 567998888878899999998753110 0 0135789999999998
Q ss_pred HHHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeCCc--eeecCCHHHHHHHHHHhhcCC------CC-------
Q 018109 150 ILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PM------- 210 (360)
Q Consensus 150 vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~g~--w~digtp~~~~~a~~~~l~~~------~~------- 210 (360)
.|...+++.... ......+.++.+++ +.++.+|+.+++ |+++.++++|.+++..+..+. +.
T Consensus 179 ~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~ 258 (458)
T PRK14354 179 ALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPE 258 (458)
T ss_pred HHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCC
Confidence 665555543221 11112455666665 467999999876 457779999988875442111 11
Q ss_pred CCccCCCCceecc------------CCCCCCcee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEEC
Q 018109 211 FSFYDATKPIYTS------------RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLG 277 (360)
Q Consensus 211 ~~~~~~~~~v~~~------------~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~ 277 (360)
..++.+.+.+++. ++|+.+|.+ .++.|.++.|+++|.|.++.+.+++||++|.|++++.|...+++|
T Consensus 259 ~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig 338 (458)
T PRK14354 259 STYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIG 338 (458)
T ss_pred eEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEe
Confidence 1122223333333 333444444 345555677777777776566677788888888777777555555
Q ss_pred Ccccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EEc
Q 018109 278 ADFYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VIL 349 (360)
Q Consensus 278 ~~~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~ig 349 (360)
++-.... +.+++. +.++ +.+++.+.+.+++||++|.||+++.+.+.+...+ +..++|+++++.+++ .||
T Consensus 339 ~~~~i~~~~~i~~~~i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig 415 (458)
T PRK14354 339 EEVKIGNFVEIKKSTIGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVG 415 (458)
T ss_pred CCcEECCceEEeeeEECCC---CEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEEC
Confidence 4311111 112111 1121 4445555556778888888888888877655444 357788888777663 678
Q ss_pred CCcEeCCCccC
Q 018109 350 KNSVITDGFVI 360 (360)
Q Consensus 350 ~~~~i~~g~~i 360 (360)
+++.||+|++|
T Consensus 416 ~~~~v~~~~~v 426 (458)
T PRK14354 416 DNAYIAAGSTI 426 (458)
T ss_pred CCCEECCCCEE
Confidence 89999998875
No 23
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=1.5e-28 Score=245.24 Aligned_cols=325 Identities=22% Similarity=0.250 Sum_probs=197.0
Q ss_pred CCCcEEEeeCcccCCCCC---------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHH
Q 018109 4 LTGNSQVLAATQTPGEAG---------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDF 66 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~---------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~l 66 (360)
..|+.+++++.++..+.. .+..+||+++++.+..+++. ..++|++++||. +++ .+++++
T Consensus 45 ~~gi~~ivvv~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l 120 (446)
T PRK14353 45 SLGPSRVAVVVGPGAEAVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARL 120 (446)
T ss_pred hCCCCcEEEEECCCHHHHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHH
Confidence 346677776666543211 12347999999999998852 137899999998 544 457888
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEE
Q 018109 67 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146 (360)
Q Consensus 67 l~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyif 146 (360)
++ |.+.+++++++..+..+ +..||.+.. ++++|..+.|||...... ....+.++|+|+|
T Consensus 121 ~~-~~~~~~~~~i~~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~ 179 (446)
T PRK14353 121 RE-RLADGADVVVLGFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAA 179 (446)
T ss_pred HH-hHhcCCcEEEEEEEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEE
Confidence 87 44566778888777655 568998777 578999999998643210 0135789999999
Q ss_pred eHHHHHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeC-CceeecCCHHHHHHHHHHhhcC---------C----
Q 018109 147 KKEILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFN-DYWEDIGTIRSFFEANLALTAH---------P---- 208 (360)
Q Consensus 147 s~~vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~-g~w~digtp~~~~~a~~~~l~~---------~---- 208 (360)
+++.|..++++.... ...+..+.++.+++ +.++.+++.+ ++|+|+++|++|.+++..+..+ .
T Consensus 180 ~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~ 259 (446)
T PRK14353 180 DGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIA 259 (446)
T ss_pred EHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeC
Confidence 998776666653221 11123456666665 4679999986 5799999999999888644322 1
Q ss_pred CCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HH
Q 018109 209 PMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AE 286 (360)
Q Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~ 286 (360)
+...++++.+.|++++.+++++.+.+ ++.|+++|.|+ ++.|.+++||++|.|++++.|...+++|++-...+ ..
T Consensus 260 ~~~~~~~~~~~I~~~~~i~~~~~I~~----~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~ 335 (446)
T PRK14353 260 PETVFFSYDTVIGRDVVIEPNVVFGP----GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVE 335 (446)
T ss_pred CCeEEECCceEECCCCEECCCCEECC----CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceE
Confidence 11123334444444444444444422 34444444444 34444445555555555544443333333211100 00
Q ss_pred HHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EEcCCcEeCCCcc
Q 018109 287 VASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VILKNSVITDGFV 359 (360)
Q Consensus 287 ~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~ 359 (360)
+++. +..+ +.+++++.+.+++||++|.||+++++.+...... ...|+++++|+.+++ .||+++.||+|++
T Consensus 336 i~~~~i~~~---~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~ 412 (446)
T PRK14353 336 VKNAKLGEG---AKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSV 412 (446)
T ss_pred EeceEECCC---CEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCE
Confidence 0000 0001 5666666667788888888888888766544333 346677777766653 5688888888876
Q ss_pred C
Q 018109 360 I 360 (360)
Q Consensus 360 i 360 (360)
|
T Consensus 413 v 413 (446)
T PRK14353 413 I 413 (446)
T ss_pred E
Confidence 4
No 24
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=6e-28 Score=241.08 Aligned_cols=329 Identities=18% Similarity=0.218 Sum_probs=219.6
Q ss_pred CCcEEEeeCcccCCCCC--------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAG--------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQ 68 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~--------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~ 68 (360)
.|+.+++++.++..+.. +++++||+++++.+..++++. +++|+|++||. +...+++++++
T Consensus 42 ~g~~~iivvv~~~~~~i~~~~~~~~~i~~v~~~~~~G~~~sv~~~~~~l~~~----~~~vlV~~~D~P~i~~~~l~~ll~ 117 (450)
T PRK14360 42 LKPDRRLVIVGHQAEEVEQSLAHLPGLEFVEQQPQLGTGHAVQQLLPVLKGF----EGDLLVLNGDVPLLRPETLEALLN 117 (450)
T ss_pred CCCCeEEEEECCCHHHHHHHhcccCCeEEEEeCCcCCcHHHHHHHHHHhhcc----CCcEEEEeCCccccCHHHHHHHHH
Confidence 46667776666644311 122479999999999988631 36799999998 56778999999
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
.|++.+++++++..+.++ +..||.+..|++++|.++.|||.....+ ..+.++++|+|+|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~ 178 (450)
T PRK14360 118 THRSSNADVTLLTARLPN--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNW 178 (450)
T ss_pred HHHhcCCcEEEEEEecCC--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEH
Confidence 999999888887777766 5679998888889999999998642110 024689999999999
Q ss_pred HHHHHHHHhhCCCCcchhhccccccccc-CceEEEEeCCce--eecCCHHHHHHHHHHhhcCC------CCCCcc-----
Q 018109 149 EILLNLLRWRFPTANDFGSEIIPASANE-QFLKAYLFNDYW--EDIGTIRSFFEANLALTAHP------PMFSFY----- 214 (360)
Q Consensus 149 ~vl~~ll~~~~~~~~~~~~~~l~~~i~~-~~I~~~~~~g~w--~digtp~~~~~a~~~~l~~~------~~~~~~----- 214 (360)
+.|.+++++..+... ..+..+++++.. .++.+|.++++| ..+++|+++..+...+.... +...++
T Consensus 179 ~~l~~~~~~~~~~~~-~~e~~~td~i~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~ 257 (450)
T PRK14360 179 PALAEVLPKLSSNND-QKEYYLTDTVSLLDPVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASC 257 (450)
T ss_pred HHHHHHHhhcccccc-CCceeHHHHHHHHhhceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeE
Confidence 988877765432211 122333333321 235667777655 55999999988776543211 001111
Q ss_pred --------------CCCCceeccCCCCCCcee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCc
Q 018109 215 --------------DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 215 --------------~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
++.+.+...+.+++++.+ .++.|.++.|+++|.|..+.+.+++||+++.|+++++|.+.+++|++
T Consensus 258 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~ 337 (450)
T PRK14360 258 TISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSN 337 (450)
T ss_pred EEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCc
Confidence 222233344455556666 45666677788888887666677888888888888888765556654
Q ss_pred ccchh-HHHHhh-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCeE-----EEcCC
Q 018109 280 FYETD-AEVASL-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VILKN 351 (360)
Q Consensus 280 ~~~~~-~~~~~~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-----~ig~~ 351 (360)
-++.+ +.++.. ++++ +.|++++.+.+++||++|+||+++++.++++... .++|+++++||.+++ +||++
T Consensus 338 ~~Ig~~~~i~~~~i~~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~ 414 (450)
T PRK14360 338 CRIGNFVEIKKSQLGEG---SKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGED 414 (450)
T ss_pred eEECCCEEEeccccCCC---cEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCC
Confidence 22222 222222 2232 5556666667788999999999999988766655 347788888877763 66788
Q ss_pred cEeCCCccC
Q 018109 352 SVITDGFVI 360 (360)
Q Consensus 352 ~~i~~g~~i 360 (360)
+.|++|++|
T Consensus 415 ~~v~~~~~v 423 (450)
T PRK14360 415 VTVAAGSTI 423 (450)
T ss_pred CEECCCCEE
Confidence 888888764
No 25
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=8.5e-27 Score=217.26 Aligned_cols=259 Identities=20% Similarity=0.299 Sum_probs=191.6
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCC------C---CCcccEEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDS------R---ASDFGLMK 96 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~------~---~~~~g~v~ 96 (360)
.|||++|+...++++ ++||||++||+++++++..+++.||+.++.++|++...... + .....++.
T Consensus 97 ~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~d~ig 170 (433)
T KOG1462|consen 97 FGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQARDVIG 170 (433)
T ss_pred cCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCcccccccccceee
Confidence 399999999999998 38999999999999999999999999888777766533211 1 11233344
Q ss_pred ECCC-CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccc
Q 018109 97 INNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASAN 175 (360)
Q Consensus 97 ~d~~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~ 175 (360)
++++ +|+......-+ ....+.+..+++|.+|.... .++|.++++|+|+.++++.+ .+. +...+|..+++|++++
T Consensus 171 i~e~t~rl~y~~~~~d--~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~d~l-~~~-~sisSfk~~f~P~lvk 245 (433)
T KOG1462|consen 171 INEDTERLAYSSDSAD--EEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVIDLL-SEK-ESISSFKADFLPYLVK 245 (433)
T ss_pred eccccceeEEeecCCc--CCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHHHHH-hcC-Ccceeecccccchhhh
Confidence 4444 35443322222 23467788888999988864 57999999999999999865 432 3345666677766543
Q ss_pred ---------------------------------cCceEEEEe--CCceeecCCHHHHHHHHH--HhhcCCCCCCccCCCC
Q 018109 176 ---------------------------------EQFLKAYLF--NDYWEDIGTIRSFFEANL--ALTAHPPMFSFYDATK 218 (360)
Q Consensus 176 ---------------------------------~~~I~~~~~--~g~w~digtp~~~~~a~~--~~l~~~~~~~~~~~~~ 218 (360)
+.++++|++ +.-+.+++|...|+++|+ .+..-.+...++....
T Consensus 246 kQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~~k~~~ 325 (433)
T KOG1462|consen 246 KQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKFVKNYV 325 (433)
T ss_pred hhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccccccchh
Confidence 145677776 357889999999999994 3433332221111111
Q ss_pred ceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcc
Q 018109 219 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 297 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
... ..+. .+++++++|+|+ ++.|++|+||.+|.||+.++|.+|++|.+
T Consensus 326 ~~~--------~l~g----~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n------------------- 374 (433)
T KOG1462|consen 326 KKV--------ALVG----ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN------------------- 374 (433)
T ss_pred hhe--------eccc----hhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC-------------------
Confidence 000 1111 278999999999 89999999999999999999999999997
Q ss_pred eEECCCCeEeeeEecCCCEECCCcEEecC
Q 018109 298 VGIGENTKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 298 ~~ig~~~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
+.||+++.|.+||||+++.||+++.+.|+
T Consensus 375 V~vg~G~~IensIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 375 VVVGDGVNIENSIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred cEecCCcceecceecccceecCCCeeeee
Confidence 99999999999999999999999999985
No 26
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.4e-26 Score=225.56 Aligned_cols=310 Identities=18% Similarity=0.275 Sum_probs=214.2
Q ss_pred CCCcEEEeeCcccCCCCCCc------cc---------------cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC
Q 018109 4 LTGNSQVLAATQTPGEAGKR------WF---------------QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD 62 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~~~------~~---------------lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d 62 (360)
.+|+.++.+..-.+..++.+ |+ +-.|+|+|...++-- ..++|++++||+++|+|
T Consensus 67 ~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~l-----itgDFiLVsgd~vsN~p 141 (673)
T KOG1461|consen 67 RAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQL-----ITGDFILVSGDTVSNMP 141 (673)
T ss_pred hcCceEEEEEecccHHHHHHHHhhccccccccceEEEEcCCCcCcHHHHHHHHHhcce-----eecceEEEeCCeeecCc
Confidence 46787766665544444433 32 467999998875432 25899999999999999
Q ss_pred HHHHHHHHHHc-----CCcEEEEEeecCCCCCCcccEEEEC-CCCceEEEEecCCccccccccccccccccccccccccC
Q 018109 63 YMDFVQNHRQS-----GADITISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP 136 (360)
Q Consensus 63 l~~ll~~h~~~-----~a~~tll~~~~~~~~~~~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~ 136 (360)
|++++++|+++ ++.|||++++...-....--.+.+| .+.|++.+.+-... .....+++.++-.+ ..+....
T Consensus 142 l~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~-~~v~vr~ 218 (673)
T KOG1461|consen 142 LRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSN-DEVEVRN 218 (673)
T ss_pred hHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCC-CcEEEEc
Confidence 99999999753 4779999987742111223345566 45688888751111 11344555555544 3344568
Q ss_pred ceeeeeEEEEeHHHHHHHHHhhC-CCCcchhhcccccccccCceEEEEeCC--ceeecCCHHHHHHHHHHhhcCCC----
Q 018109 137 YIASMGVYLFKKEILLNLLRWRF-PTANDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEANLALTAHPP---- 209 (360)
Q Consensus 137 ~~~~~GIyifs~~vl~~ll~~~~-~~~~~~~~~~l~~~i~~~~I~~~~~~g--~w~digtp~~~~~a~~~~l~~~~---- 209 (360)
++.+++|-+|||.++..+.++.. +...+|.+.+|.+-+-+.+|+++.+.. |..++.+++.|...+++++++|.
T Consensus 219 DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~V 298 (673)
T KOG1461|consen 219 DLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLV 298 (673)
T ss_pred cCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccccc
Confidence 99999999999999976544321 223355556666666689999999864 89999999999999999999982
Q ss_pred -CCCccCC-CCceecc-CCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccch
Q 018109 210 -MFSFYDA-TKPIYTS-RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 283 (360)
Q Consensus 210 -~~~~~~~-~~~v~~~-~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~ 283 (360)
...+.+. ....... .+-++.+.+ .++.+. ++.||.++.|+ ++.|.+|+||.+|.||.|++|.++.++.+
T Consensus 299 pd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~----- 373 (673)
T KOG1461|consen 299 PDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN----- 373 (673)
T ss_pred ccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-----
Confidence 1111111 1111111 112333333 234443 78899999999 88889999999999999999999988775
Q ss_pred hHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceE
Q 018109 284 DAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 340 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 340 (360)
|+||+||.|.+|+|++++.|+.++++..++.++..++++++..
T Consensus 374 --------------v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~ 416 (673)
T KOG1461|consen 374 --------------VTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFV 416 (673)
T ss_pred --------------cEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcc
Confidence 9999999999999999999999999887655554444444433
No 27
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.90 E-value=2.1e-23 Score=193.36 Aligned_cols=175 Identities=23% Similarity=0.303 Sum_probs=139.9
Q ss_pred CCcEEEeeCcccCCCCC-------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHH
Q 018109 5 TGNSQVLAATQTPGEAG-------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~-------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ 65 (360)
+|+++++++.++.++.. +...+|||+|+++++++++. ..+++|+|++||++++.|+++
T Consensus 45 ~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~ 121 (257)
T cd06428 45 PDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQE 121 (257)
T ss_pred CCCcEEEEEecCCHHHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHH
Confidence 57888888877644311 11257999999999999853 113789999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcccEEEEC-CCCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 66 ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
++++|+++++++|+++.+++.+.+..||++.+| ++++|+++.|||..+. +.++++|+|
T Consensus 122 ~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giy 180 (257)
T cd06428 122 LLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVY 180 (257)
T ss_pred HHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEE
Confidence 999999999999999988754446789999888 6789999999987532 468999999
Q ss_pred EEeHHHHHHHHHhhCC------------------CCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHh
Q 018109 145 LFKKEILLNLLRWRFP------------------TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~------------------~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~ 204 (360)
+|++++|+.+ .+..+ ...++..++++.+++++++.+|+++|||.|||||++|+++++.+
T Consensus 181 i~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 181 LFSPEIFDTI-KKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred EECHHHHHHH-hhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 9999999765 33211 11234457888888888999999999999999999999999753
No 28
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=1.2e-22 Score=183.02 Aligned_cols=172 Identities=24% Similarity=0.443 Sum_probs=141.5
Q ss_pred CCCcEEEeeCcccC-CC-------CC-----------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHH
Q 018109 4 LTGNSQVLAATQTP-GE-------AG-----------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYM 64 (360)
Q Consensus 4 ~~g~~~i~~~~~~~-~~-------~~-----------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~ 64 (360)
.+|+++|+++.++. .. .+ |+.++|-|+|+..+++++.+ ++|+|+.||.++.-++.
T Consensus 43 ~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~~------~~f~l~LGDNi~~~~l~ 116 (286)
T COG1209 43 LAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVGD------DDFVLYLGDNIFQDGLS 116 (286)
T ss_pred HcCCceEEEEecCCchhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHhhcCC------CceEEEecCceeccChH
Confidence 57999999998882 22 12 23358999999999999984 89999999997766999
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 65 ~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
++++.+.++.+++++++.++++ |++||++.+|+++++++++|||..+. ++|+-+|+|
T Consensus 117 ~~~~~~~~~~~ga~i~~~~V~d--P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY 173 (286)
T COG1209 117 ELLEHFAEEGSGATILLYEVDD--PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLY 173 (286)
T ss_pred HHHHHHhccCCCcEEEEEEcCC--cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEE
Confidence 9999999999999999999998 88999999998899999999999875 689999999
Q ss_pred EEeHHHHHHHHHhhCCCCcchhh----ccccccccc-CceEEEEeCCceeecCCHHHHHHHHHHhhcC
Q 018109 145 LFKKEILLNLLRWRFPTANDFGS----EIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~~~~~~~~----~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~~~~l~~ 207 (360)
+|++++|+. .+...|.. -.+ +.+..++++ ..+......|+|.|.||+++|++|+..++..
T Consensus 174 ~~d~~Vf~~-~~~ikPS~--RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~ 238 (286)
T COG1209 174 FYDPSVFEA-IKQIKPSA--RGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTV 238 (286)
T ss_pred EeChHHHHH-HHcCCCCC--CCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHH
Confidence 999999975 46654431 223 344455554 5566667788999999999999999988763
No 29
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.89 E-value=2.5e-22 Score=183.40 Aligned_cols=170 Identities=25% Similarity=0.386 Sum_probs=139.8
Q ss_pred CCcEEEeeCcccCCCCC-------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHH
Q 018109 5 TGNSQVLAATQTPGEAG-------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~-------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ 65 (360)
.|+.+++++.++..+.. ....+||+++|+.+..++++ .+++|+|++||++++.|+.+
T Consensus 44 ~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~ 119 (233)
T cd06425 44 AGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAE 119 (233)
T ss_pred CCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHH
Confidence 47778887777654321 12347999999999999863 13689999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC-CCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 66 FVQNHRQSGADITISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 66 ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~-~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
++++|+++++++++++.+.++ +++||++.+|+ +++|.++.|||..+. +.++++|+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy 176 (233)
T cd06425 120 LLDFHKKHGAEGTILVTKVED--PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIY 176 (233)
T ss_pred HHHHHHHcCCCEEEEEEEcCC--ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEE
Confidence 999999999999999988765 56899999987 689999999987542 468999999
Q ss_pred EEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 145 LFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
+|++++|+.+ ... ..+...++++.++++.++.+|+++|+|.|+|||++|++|++.+|
T Consensus 177 i~~~~~l~~l-~~~---~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 177 ILNPSVLDRI-PLR---PTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EECHHHHHhc-ccC---cccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 9999999765 331 22344578999988899999999999999999999999998775
No 30
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.88 E-value=1.2e-22 Score=178.97 Aligned_cols=148 Identities=17% Similarity=0.197 Sum_probs=135.4
Q ss_pred CCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eE
Q 018109 209 PMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TM 274 (360)
Q Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~ 274 (360)
.+++++++.+.+++++.|+|.|.+.+ ++.|+++++|. +++|+ .++||++++|.+++.|+. .+
T Consensus 7 HPTAiIe~gA~ig~~V~IGpf~iIg~----~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l 82 (260)
T COG1043 7 HPTAIIEPGAEIGEDVKIGPFCIIGP----NVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRL 82 (260)
T ss_pred CcceeeCCCCCcCCCCEECceEEECC----CcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEE
Confidence 35778888999999999999998866 88999999999 88886 899999999999999994 89
Q ss_pred EECCcccchh-HHHHhhhhCCCcceEECCCCeE-eeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCe-----EE
Q 018109 275 MLGADFYETD-AEVASLLAEGRVPVGIGENTKI-KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TV 347 (360)
Q Consensus 275 ~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i-~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ 347 (360)
++|+++++|| +|||+++.+|++-|.||+++++ .+++|.|||+||.+|+++|.+.+.+|+.|+|++.||..+ +.
T Consensus 83 ~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvr 162 (260)
T COG1043 83 IIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVR 162 (260)
T ss_pred EECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEE
Confidence 9999999999 9999999999989999999998 599999999999999999999999999999999998665 58
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||++++||..|-|
T Consensus 163 IG~~amiGg~S~v 175 (260)
T COG1043 163 IGAHAMIGGLSAV 175 (260)
T ss_pred Ecchheecccccc
Confidence 8999999988743
No 31
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.87 E-value=7.2e-22 Score=181.57 Aligned_cols=157 Identities=34% Similarity=0.616 Sum_probs=125.7
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCc--EEEEEeecCCCCCCcccEEEECCCCce
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGAD--ITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~--~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
+|||+||+++.+++... ..+++|+|++||++++.|+.++++.|++++++ +++...+.++ +++||++..|++++|
T Consensus 84 ~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~V 159 (248)
T PF00483_consen 84 LGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVED--PSRYGVVEVDEDGRV 159 (248)
T ss_dssp SCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSG--GGGSEEEEEETTSEE
T ss_pred cchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhccccccccccccccccc--cccceeeeeccceeE
Confidence 69999999999999851 00234999999999999999999999999984 4555555544 789999999988999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHH--hhCCCCcchhhcccccccccC-ceE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTANDFGSEIIPASANEQ-FLK 180 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~--~~~~~~~~~~~~~l~~~i~~~-~I~ 180 (360)
.+|.|||..+. .+.++++|+|+|++++|..+++ ........+..++++.+++++ .+.
T Consensus 160 ~~~~EKP~~~~--------------------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~ 219 (248)
T PF00483_consen 160 IRIVEKPDNPN--------------------ASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVY 219 (248)
T ss_dssp EEEEESCSSHS--------------------HSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEE
T ss_pred EEEeccCcccc--------------------cceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceE
Confidence 99999998643 1468999999999999987754 111223445567888888865 566
Q ss_pred EEEeCC--ceeecCCHHHHHHHHHHhhc
Q 018109 181 AYLFND--YWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 181 ~~~~~g--~w~digtp~~~~~a~~~~l~ 206 (360)
+|..++ +|+|+|||++|++|++.+++
T Consensus 220 ~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 220 AFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred EEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 889888 79999999999999999875
No 32
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.87 E-value=2.2e-21 Score=179.58 Aligned_cols=147 Identities=20% Similarity=0.319 Sum_probs=124.8
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
++|||+||++++++++ +++|+|++||+++++|+.+++++|+++++++|++.. ++ +..||++.+| +++|+
T Consensus 102 ~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~--~~~yG~v~~d-~~~V~ 170 (254)
T TIGR02623 102 STQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QP--PGRFGALDLE-GEQVT 170 (254)
T ss_pred cCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cC--CCcccEEEEC-CCeEE
Confidence 3799999999999996 379999999999999999999999999999988765 23 5679999987 46999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~ 184 (360)
+|.|||... +.++++|+|+|++++|+ .++.. ..++..++++.+++++++.+|.+
T Consensus 171 ~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~~---~~~~~~d~i~~l~~~~~v~~~~~ 224 (254)
T TIGR02623 171 SFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDGD---ATVWEQEPLETLAQRGELSAYEH 224 (254)
T ss_pred EEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hcccc---CchhhhhHHHHHHhCCCEEEEeC
Confidence 999998532 35789999999999995 44442 23555688999998889999999
Q ss_pred CCceeecCCHHHHHHHHHHhhcCC
Q 018109 185 NDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 185 ~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
+|+|.|+|||++|.+++..+....
T Consensus 225 ~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 225 SGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred CCEEecCCchHHHHHHHHHHHcCC
Confidence 999999999999999999887765
No 33
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.87 E-value=2.5e-21 Score=182.69 Aligned_cols=156 Identities=16% Similarity=0.250 Sum_probs=120.8
Q ss_pred CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--------cCHHHHHHHHHHcCCcEEEEEeecCCCCCCccc
Q 018109 22 KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--------MDYMDFVQNHRQSGADITISCLPMDDSRASDFG 93 (360)
Q Consensus 22 ~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--------~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g 93 (360)
+++++|||+||++|.+++++ ++|+|++||++++ +++++++++|+++++.++++....++ +++||
T Consensus 104 q~~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~--~~~yG 175 (297)
T TIGR01105 104 QAQPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGD--LSEYS 175 (297)
T ss_pred CCCcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCC--Cccce
Confidence 34568999999999999963 7899999999987 68999999998888766444333233 78999
Q ss_pred EEEEC----CCCc---eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC---Cc
Q 018109 94 LMKIN----NEGR---VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 163 (360)
Q Consensus 94 ~v~~d----~~g~---V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~---~~ 163 (360)
++..+ ++++ |.++.|||..+.. ..+.++++|+|+|++++|+.+ +...+. ..
T Consensus 176 vv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~ 236 (297)
T TIGR01105 176 VIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMAVGRYVLSADIWAEL-ERTEPGAWGRI 236 (297)
T ss_pred EEEecccccCCCCeeeEeEEEECCCCccc------------------CCcCEEEEEEEEECHHHHHHH-hcCCCCCCCee
Confidence 99983 3564 5899999965421 025799999999999999754 543221 11
Q ss_pred chhhcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 164 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 164 ~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
. ..+.++.+++++++++|.++|+|+|+|+|++|++++..+.
T Consensus 237 ~-ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 237 Q-LTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred e-HHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1 2367777888889999999999999999999999988864
No 34
>PRK10122 GalU regulator GalF; Provisional
Probab=99.85 E-value=1.1e-20 Score=178.51 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=121.7
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--------cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--------MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMK 96 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--------~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~ 96 (360)
++|||+|++++.+++.+ ++|+|++||++++ +|+++++++|.+++++++++....+ .+.+||++.
T Consensus 107 ~lGtg~al~~a~~~l~~------~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~yGvv~ 178 (297)
T PRK10122 107 PLGLGHSILCARPAIGD------NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPG--DLSEYSVIQ 178 (297)
T ss_pred cCchHHHHHHHHHHcCC------CCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcEEEEEECCC--CCCCceEEE
Confidence 58999999999999953 7899999999986 5899999999988887554443333 378999999
Q ss_pred EC----CCC---ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC--cchhh
Q 018109 97 IN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA--NDFGS 167 (360)
Q Consensus 97 ~d----~~g---~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~--~~~~~ 167 (360)
.| +++ +|.+|.|||..+.. ..+.++++|+|+|++++|..+. +..+.. .....
T Consensus 179 ~d~~~~~~g~v~~I~~~~EKp~~~~~------------------~~s~~~~~GiYi~~~~i~~~l~-~~~~~~~~e~~lt 239 (297)
T PRK10122 179 TKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMAVGRYVLSADIWPELE-RTEPGAWGRIQLT 239 (297)
T ss_pred ecCcccCCCCeeeEEEEEECCCCccc------------------CCccEEEEEEEEECHHHHHHHH-hCCCCCCCeeeHH
Confidence 85 355 68999999964320 0246899999999999998763 322211 11224
Q ss_pred cccccccccCceEEEEeCCceeecCCHHHHHHHHHHh-hcC
Q 018109 168 EIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL-TAH 207 (360)
Q Consensus 168 ~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~-l~~ 207 (360)
++++.++++.++.+|.++|+|+|+|+|++|++++..+ |..
T Consensus 240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 6777888889999999999999999999999999998 443
No 35
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.84 E-value=2.9e-20 Score=176.06 Aligned_cols=153 Identities=18% Similarity=0.254 Sum_probs=122.5
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--------cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEE
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--------MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLM 95 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--------~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v 95 (360)
..+|||+|++++.+++. +++|+|++||++++ .|+.+++++|.+++++ |+++.+++. +..||++
T Consensus 111 ~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv 181 (302)
T PRK13389 111 LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVAD--VTAYGVV 181 (302)
T ss_pred CCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEccc--CCcceEE
Confidence 35899999999999985 37899999999875 7999999999988876 677777755 6789999
Q ss_pred EECC-------CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC--Ccchh
Q 018109 96 KINN-------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFG 166 (360)
Q Consensus 96 ~~d~-------~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~--~~~~~ 166 (360)
..+. +++|..+.|||..... .+.++++|+|+|++++|+. ++...+. ...+.
T Consensus 182 ~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s~~~~~GiYi~~~~il~~-l~~~~~~~~~e~~l 241 (302)
T PRK13389 182 DCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIVGRYVLSADIWPL-LAKTPPGAGDEIQL 241 (302)
T ss_pred EecCcccccCCcceEEEEEECCCCCCC-------------------CccEEEEEEEEECHHHHHH-HHhCCCCCCCeeeH
Confidence 8763 3479999999974321 1468999999999999964 5543221 11223
Q ss_pred hcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 167 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 167 ~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
.++++.++++.++.+|.++|+|+|+|||++|++++..+-
T Consensus 242 ~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 242 TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 567788888889999999999999999999999998874
No 36
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.83 E-value=9.8e-20 Score=168.45 Aligned_cols=148 Identities=20% Similarity=0.354 Sum_probs=123.9
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 105 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~ 105 (360)
+||++|++++.+++.+ +++|+|++||++++.|+.++++.|.++++++|+++.. . +..||++.+|++++|..
T Consensus 102 ~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--~--~~~~g~v~~d~~g~V~~ 172 (253)
T cd02524 102 TMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--P--PGRFGELDLDDDGQVTS 172 (253)
T ss_pred cccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--C--CCcccEEEECCCCCEEE
Confidence 4699999999999852 2789999999999999999999999999999887653 2 46799999988899999
Q ss_pred EEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeC
Q 018109 106 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 185 (360)
Q Consensus 106 ~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~ 185 (360)
+.|||..+ +.++++|+|+|++++|+.+ ++. ..++..+.++.+++++++.+|+++
T Consensus 173 ~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~~~~~~d~l~~li~~~~v~~~~~~ 226 (253)
T cd02524 173 FTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---DTVFEREPLERLAKDGELMAYKHT 226 (253)
T ss_pred EEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---cchhhHHHHHHHHhcCCEEEEecC
Confidence 99998642 2478999999999998765 332 224456788999988899999999
Q ss_pred CceeecCCHHHHHHHHHHhhcCC
Q 018109 186 DYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 186 g~w~digtp~~~~~a~~~~l~~~ 208 (360)
|+|.+|+||++|.+++..+....
T Consensus 227 g~w~~I~t~~~~~~~~~~~~~~~ 249 (253)
T cd02524 227 GFWQCMDTLRDKQTLEELWNSGK 249 (253)
T ss_pred CEEEeCcCHHHHHHHHHHHHcCC
Confidence 99999999999999998776543
No 37
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.82 E-value=3.4e-19 Score=165.98 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=120.9
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeec---CHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC-
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN- 99 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~---dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~- 99 (360)
+++|||+||+++.+++++ ++|+|++||.++.. +++++++.|++++++ ++++..++.+.+.+||++.+|+
T Consensus 102 ~~~Gt~~al~~~~~~i~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~ 174 (267)
T cd02541 102 EPLGLGHAVLCAKPFIGD------EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIAVEEVPPEDVSKYGIVKGEKI 174 (267)
T ss_pred CCCChHHHHHHHHHHhCC------CceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEEEEEcChhcCccceEEEeecC
Confidence 458999999999999963 78999999998765 499999999987775 4555566544467899999885
Q ss_pred ---CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCC-CCcchhhcccccccc
Q 018109 100 ---EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-TANDFGSEIIPASAN 175 (360)
Q Consensus 100 ---~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~-~~~~~~~~~l~~~i~ 175 (360)
.++|..+.|||..... .+.++++|+|+|++++|..+.+.... .......++++.+++
T Consensus 175 ~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~ 235 (267)
T cd02541 175 DGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLE 235 (267)
T ss_pred CCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHh
Confidence 2489999999864221 14688999999999999765331111 111123467888888
Q ss_pred cCceEEEEeCCceeecCCHHHHHHHHHHhh
Q 018109 176 EQFLKAYLFNDYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 176 ~~~I~~~~~~g~w~digtp~~~~~a~~~~l 205 (360)
++++.+|+++|+|.|+|||++|+++++++.
T Consensus 236 ~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 236 EEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred cCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 789999999999999999999999999875
No 38
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.82 E-value=4.1e-19 Score=162.90 Aligned_cols=151 Identities=23% Similarity=0.348 Sum_probs=122.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
.+||++|++++.++++. ++|+|++||. +++.|+.+++++|+++++++|+++.++++ ++.||++.+|++|+|
T Consensus 83 ~~G~~~al~~a~~~~~~------~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~g~v 154 (240)
T cd02538 83 PGGLAQAFIIGEEFIGD------DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--PERYGVVEFDENGRV 154 (240)
T ss_pred CCCHHHHHHHHHHhcCC------CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--hhcCceEEecCCCcE
Confidence 47999999999999863 7899999997 55778999999999888899999888876 568999999888899
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC-Ccch-hhcccccccccCceEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDF-GSEIIPASANEQFLKA 181 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~~~l~~~i~~~~I~~ 181 (360)
+++.|||..+. +.+.++|+|+|++++|+. +++..+. ..++ ..++++.+++++++.+
T Consensus 155 ~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~-l~~~~~~~~~~~~l~d~~~~l~~~g~~~~ 212 (240)
T cd02538 155 LSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFEI-AKQLKPSARGELEITDVNNEYLEKGKLSV 212 (240)
T ss_pred EEEEECCCCCC---------------------CCeEEEEEEEECHHHHHH-HHhcCCCCCCeEEhHHHHHHHHHhCCeEE
Confidence 99999986542 458899999999999864 4543221 1111 2367777777777777
Q ss_pred EEeC--CceeecCCHHHHHHHHHHhh
Q 018109 182 YLFN--DYWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 182 ~~~~--g~w~digtp~~~~~a~~~~l 205 (360)
+.++ ++|+|||||++|.++++.+.
T Consensus 213 ~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 213 ELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred EEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 7766 99999999999999998653
No 39
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.81 E-value=3.8e-19 Score=164.96 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=117.1
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeec---CHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECC-
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN- 99 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~---dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~- 99 (360)
+.+||++|++++.+++. +++|+|++||.++.. ++++++++|+++++++ +++..++.+.+.+||++..|.
T Consensus 102 ~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~ 174 (260)
T TIGR01099 102 EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGV 174 (260)
T ss_pred CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEeccc
Confidence 46899999999999985 378999999998754 6999999999988875 556566544468899998862
Q ss_pred ---CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC-cchhhcccccccc
Q 018109 100 ---EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-NDFGSEIIPASAN 175 (360)
Q Consensus 100 ---~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~-~~~~~~~l~~~i~ 175 (360)
+++|+.+.|||..... .+.++++|+|+|++++|..+.+...... .....++++.+++
T Consensus 175 ~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~ 235 (260)
T TIGR01099 175 EEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLE 235 (260)
T ss_pred cCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHh
Confidence 3699999999953211 1468999999999999987643221111 1122367788888
Q ss_pred cCceEEEEeCCceeecCCHHHHHHH
Q 018109 176 EQFLKAYLFNDYWEDIGTIRSFFEA 200 (360)
Q Consensus 176 ~~~I~~~~~~g~w~digtp~~~~~a 200 (360)
++++.+|+++|||.|||||++|+++
T Consensus 236 ~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 236 KETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred cCCEEEEEcceEEEeCCCHHHHhhC
Confidence 8899999999999999999999864
No 40
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.80 E-value=1.7e-18 Score=163.03 Aligned_cols=150 Identities=19% Similarity=0.337 Sum_probs=121.1
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i-~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
++|||+|+..+.+++.+ ++|++++||.+ ++.|+.+++++|.++++++|+++.++++ +++||++.+|++++|
T Consensus 86 ~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~--p~~yGvv~~d~~g~v 157 (292)
T PRK15480 86 PDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQNGTA 157 (292)
T ss_pred CCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCC--cccCcEEEECCCCcE
Confidence 58999999999999963 57999999974 5899999999999888889998888876 779999999988999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC---CcchhhcccccccccCceE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQFLK 180 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~---~~~~~~~~l~~~i~~~~I~ 180 (360)
+.+.|||..+. +.++++|+|+|++++++.+ ++..+. ..++ .++++.+++++++.
T Consensus 158 ~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~~-~~~~~~~~ge~~i-td~~~~~l~~g~~~ 214 (292)
T PRK15480 158 ISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEMA-KNLKPSARGELEI-TDINRIYMEQGRLS 214 (292)
T ss_pred EEEEECCCCCC---------------------CCEEEEEEEEEChHHHHHH-hhcCCCCCCeeEh-HHHHHHHHhcCCeE
Confidence 99999997543 5789999999999998754 443222 1222 35677777776664
Q ss_pred E-EEeCC-ceeecCCHHHHHHHHHHhh
Q 018109 181 A-YLFND-YWEDIGTIRSFFEANLALT 205 (360)
Q Consensus 181 ~-~~~~g-~w~digtp~~~~~a~~~~l 205 (360)
. +...+ +|+|+|||++|.+|+..+.
T Consensus 215 ~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 215 VAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 4 55567 5999999999999998775
No 41
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.80 E-value=1.3e-18 Score=163.65 Aligned_cols=151 Identities=22% Similarity=0.373 Sum_probs=121.5
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
++|||+|++.+.+++++ ++|++++||. +++.|+.++++.|.++++++|++..++++ +++||++.+|++++|
T Consensus 82 ~~Gta~al~~a~~~l~~------~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~--p~~yGvv~~d~~g~V 153 (286)
T TIGR01207 82 PDGLAQAFIIGEDFIGG------DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD--PERYGVVEFDSNGRA 153 (286)
T ss_pred CCCHHHHHHHHHHHhCC------CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC--HHHCceEEECCCCeE
Confidence 58999999999999974 7899999997 56889999999999888889999988876 678999999988999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCC-Ccch-hhcccccccccCceEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDF-GSEIIPASANEQFLKA 181 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~~~l~~~i~~~~I~~ 181 (360)
+++.|||..+. ++++++|+|+|++++++. ++...+. ..++ ..++++.+++++++..
T Consensus 154 ~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~eitdv~~~~l~~g~l~v 211 (286)
T TIGR01207 154 ISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVEI-ARQLKPSARGELEITDLNRVYLEEGRLSV 211 (286)
T ss_pred EEEEECCCCCC---------------------CCEEEEEEEEEchHHHHH-HhhcCCCCCCcEeHHHHHHHHHHcCCcEE
Confidence 99999996542 568999999999999864 4443221 1111 2366777777766666
Q ss_pred EEe-CCc-eeecCCHHHHHHHHHHhh
Q 018109 182 YLF-NDY-WEDIGTIRSFFEANLALT 205 (360)
Q Consensus 182 ~~~-~g~-w~digtp~~~~~a~~~~l 205 (360)
+.+ .|+ |+|+|||++|++|+..+.
T Consensus 212 ~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 212 ELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 555 576 999999999999998764
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.78 E-value=3.7e-18 Score=155.91 Aligned_cols=170 Identities=24% Similarity=0.360 Sum_probs=133.3
Q ss_pred CCcEEEeeCcccCCCCC------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHH
Q 018109 5 TGNSQVLAATQTPGEAG------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDF 66 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~l 66 (360)
.|+.+++++.++..+.. .++++||+++++.+..++++ ++|++++||.+++.++.++
T Consensus 44 ~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~~------~~~li~~~D~~~~~~~~~~ 117 (236)
T cd04189 44 AGIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLGD------EPFVVYLGDNLIQEGISPL 117 (236)
T ss_pred CCCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhcCC------CCEEEEECCeecCcCHHHH
Confidence 47777777766533211 12347999999999998863 7899999999999999999
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEE
Q 018109 67 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146 (360)
Q Consensus 67 l~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyif 146 (360)
++.|.++++++++++.+.++ +..||++.+| +++|..+.|||..+. +.+.++|+|+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d-~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~ 173 (236)
T cd04189 118 VRDFLEEDADASILLAEVED--PRRFGVAVVD-DGRIVRLVEKPKEPP---------------------SNLALVGVYAF 173 (236)
T ss_pred HHHHHhcCCceEEEEEECCC--cccceEEEEc-CCeEEEEEECCCCCC---------------------CCEEEEEEEEe
Confidence 99999999999998888766 5679988887 459999999986432 35789999999
Q ss_pred eHHHHHHHHHhhCCC---Ccchhhccccccccc-CceEEEEeCCceeecCCHHHHHHHHHHhhc
Q 018109 147 KKEILLNLLRWRFPT---ANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 147 s~~vl~~ll~~~~~~---~~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
++++|+.+ +...+. ... ..++++.++++ .+|.+|+.+++|.|+|||++|.++++.+|+
T Consensus 174 ~~~~~~~l-~~~~~~~~~~~~-~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 174 TPAIFDAI-SRLKPSWRGELE-ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred CHHHHHHH-HhcCCCCCCeEE-HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 99999764 432221 111 24677777754 579999999999999999999999999886
No 43
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.78 E-value=1.2e-18 Score=157.76 Aligned_cols=160 Identities=14% Similarity=0.207 Sum_probs=127.5
Q ss_pred CCCcEEEeeCcccCCCCCC-----------------c-cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHH
Q 018109 4 LTGNSQVLAATQTPGEAGK-----------------R-WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMD 65 (360)
Q Consensus 4 ~~g~~~i~~~~~~~~~~~~-----------------~-~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ 65 (360)
..|+.+|+++.++.++... . ..+||+++|+.+..++++ ++|+|++||++++.|+.+
T Consensus 42 ~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~~------~~~lv~~~D~i~~~~~~~ 115 (221)
T cd06422 42 AAGIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLGD------EPFLVVNGDILWDGDLAP 115 (221)
T ss_pred HCCCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcCC------CCEEEEeCCeeeCCCHHH
Confidence 4578888888877544211 1 357999999999999863 789999999999999999
Q ss_pred HHHHHH--HcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeE
Q 018109 66 FVQNHR--QSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 143 (360)
Q Consensus 66 ll~~h~--~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GI 143 (360)
+++.|+ +.++.+++...+.+. ...||.+.+|++++|..+.|+|.. .+.++|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Gi 169 (221)
T cd06422 116 LLLLHAWRMDALLLLLPLVRNPG--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGI 169 (221)
T ss_pred HHHHHHhccCCCceEEEEEEcCC--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEE
Confidence 999998 466667776666554 678999999888899999888742 4789999
Q ss_pred EEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHH
Q 018109 144 YLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 200 (360)
Q Consensus 144 yifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a 200 (360)
|+|++++|..+.+. .. ...++++.+++++++.+|..+++|.|+|||++|.+|
T Consensus 170 yi~~~~~l~~l~~~----~~-~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 170 QILSPELFAGIPPG----KF-SLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred EEEcHHHHhhCCcC----cc-cHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99999999875322 11 234688888888899999999999999999999764
No 44
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.76 E-value=6.2e-18 Score=152.48 Aligned_cols=163 Identities=28% Similarity=0.455 Sum_probs=130.3
Q ss_pred CCcEEEeeCcccCCCCC------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHH
Q 018109 5 TGNSQVLAATQTPGEAG------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDF 66 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~l 66 (360)
.|+.+++++.++..+.. +...+||+++++.+..++. +++|++++||.+++.++.++
T Consensus 42 ~g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~ 115 (223)
T cd06915 42 QGISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLAL 115 (223)
T ss_pred CCCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHH
Confidence 46777777776533210 0124799999999999885 38999999999999999999
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEE
Q 018109 67 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146 (360)
Q Consensus 67 l~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyif 146 (360)
++.|++.++++++++.+.++ +..|+.+.+|++++|..+.|||.... +.++++|+|+|
T Consensus 116 l~~~~~~~~~~~~~~~~~~~--~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~ 172 (223)
T cd06915 116 LAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLL 172 (223)
T ss_pred HHHHHhCCCcEEEEEEECCC--CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEE
Confidence 99999888888888888765 46789888888889999999876431 46889999999
Q ss_pred eHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEeCCceeecCCHHHHHHH
Q 018109 147 KKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 200 (360)
Q Consensus 147 s~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a 200 (360)
++++|..+ ... ..++..++++.+++++++.+|+++++|+||+||++|.+|
T Consensus 173 ~~~~l~~~-~~~---~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 173 RKEILAEI-PAD---AFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred CHHHHhhC-Ccc---CCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 99999764 322 223456788888877799999999999999999999887
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.75 E-value=1.3e-17 Score=149.81 Aligned_cols=138 Identities=34% Similarity=0.587 Sum_probs=116.3
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
.+||+++|+.+..++. +++|+|++||++++.|+.++++.|+++++++++++.+.+. +.+||++.+|++++|.
T Consensus 80 ~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~d~~~~v~ 151 (217)
T cd04181 80 PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED--PSRYGVVELDDDGRVT 151 (217)
T ss_pred CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--CCcceEEEEcCCCcEE
Confidence 4799999999999884 4899999999999999999999999999999999988774 6789999998889999
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF 184 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~ 184 (360)
++.|||.... ..++++|+|+|++++|+. +++.......+..++++.++++.++.+|++
T Consensus 152 ~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~ 209 (217)
T cd04181 152 RFVEKPTLPE---------------------SNLANAGIYIFEPEILDY-IPEILPRGEDELTDAIPLLIEEGKVYGYPV 209 (217)
T ss_pred EEEECCCCCC---------------------CCEEEEEEEEECHHHHHh-hhhcCCcccccHHHHHHHHHhcCCEEEEEc
Confidence 9999987532 368999999999999964 454322223455678888888899999999
Q ss_pred CCceeecC
Q 018109 185 NDYWEDIG 192 (360)
Q Consensus 185 ~g~w~dig 192 (360)
+|+|+|+|
T Consensus 210 ~g~w~dig 217 (217)
T cd04181 210 DGYWLDIG 217 (217)
T ss_pred CCEEecCC
Confidence 99999987
No 46
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.74 E-value=9e-18 Score=155.96 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=123.1
Q ss_pred CCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEE
Q 018109 210 MFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMM 275 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~ 275 (360)
+++++++.+.+.+++.|+|.+.+.+ ++.||++|.|. ++.|. +++||++|.|++++.|+. .++
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~ 82 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGP----NVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLV 82 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECC----CCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEE
Confidence 3455666666666666666666644 78889999988 77775 799999999999999986 689
Q ss_pred ECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EE
Q 018109 276 LGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VI 348 (360)
Q Consensus 276 ~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~i 348 (360)
+|++..+++ ++|++++..++..+.||++|.|. +++|+++|.||+++++++...+.++++|+|+++|+.+++ .|
T Consensus 83 IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~I 162 (262)
T PRK05289 83 IGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRI 162 (262)
T ss_pred ECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEE
Confidence 999988888 88888875444559999999997 899999999999999999999999999999999997774 67
Q ss_pred cCCcEeCCCccC
Q 018109 349 LKNSVITDGFVI 360 (360)
Q Consensus 349 g~~~~i~~g~~i 360 (360)
|+++.|++|++|
T Consensus 163 g~~~~Ig~gs~V 174 (262)
T PRK05289 163 GAHAMVGGMSGV 174 (262)
T ss_pred CCCCEEeeecce
Confidence 888999988875
No 47
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.74 E-value=1.3e-17 Score=153.79 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=121.5
Q ss_pred CCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEEE
Q 018109 211 FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMML 276 (360)
Q Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~~ 276 (360)
++.+++++.+..++.|+|+|.+.+ ++.||++|.|. ++.|. ++.||++|.|++++.|+. .+++
T Consensus 5 ~a~I~~~a~Ig~~v~Igp~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~I 80 (255)
T PRK12461 5 TAVIDPSAKLGSGVEIGPFAVIGA----NVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEI 80 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECC----CCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEE
Confidence 455666666666666666666643 78888999888 77775 799999999999999985 6889
Q ss_pred CCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEc
Q 018109 277 GADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VIL 349 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig 349 (360)
|++..+++ ++|++++..| ..++||++|.|. +++|+++|.||++|++++.+.+.++++|+|+++|+.++. .||
T Consensus 81 G~~~~I~e~vtI~~gt~~g-~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG 159 (255)
T PRK12461 81 GDRNVIREGVTIHRGTKGG-GVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIG 159 (255)
T ss_pred CCceEECCccEEecCcccC-CcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEEC
Confidence 99999999 8999988443 349999999996 899999999999999999999999999999999998874 678
Q ss_pred CCcEeCCCccC
Q 018109 350 KNSVITDGFVI 360 (360)
Q Consensus 350 ~~~~i~~g~~i 360 (360)
++++|++|++|
T Consensus 160 ~~a~Vg~gs~V 170 (255)
T PRK12461 160 ALAMMAGGSRI 170 (255)
T ss_pred CCcEECCCceE
Confidence 88888888764
No 48
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.73 E-value=6.7e-17 Score=145.92 Aligned_cols=160 Identities=23% Similarity=0.389 Sum_probs=124.5
Q ss_pred CCcEEEeeCcccCCCCC------------------CccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHH
Q 018109 5 TGNSQVLAATQTPGEAG------------------KRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDF 66 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~------------------~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~l 66 (360)
.|+.+++++.++..++. ++.++||+++++.+.+... ++|+|++||.+++.++.++
T Consensus 42 ~~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~~~~-------~~~lv~~~D~i~~~~~~~l 114 (220)
T cd06426 42 QGFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPEKPT-------DPFLVMNGDILTNLNYEHL 114 (220)
T ss_pred CCCcEEEEECccCHHHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHhhCC-------CCEEEEcCCEeeccCHHHH
Confidence 57788888777644311 1235799999988876553 7899999999999999999
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEE
Q 018109 67 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 146 (360)
Q Consensus 67 l~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyif 146 (360)
++.|++.++++++++.+... ...||++..|. ++|+++.|||.. +.++++|+|+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~~v~~~~ek~~~-----------------------~~~~~~Giy~~ 168 (220)
T cd06426 115 LDFHKENNADATVCVREYEV--QVPYGVVETEG-GRITSIEEKPTH-----------------------SFLVNAGIYVL 168 (220)
T ss_pred HHHHHhcCCCEEEEEEEcCC--CCcceEEEECC-CEEEEEEECCCC-----------------------CCeEEEEEEEE
Confidence 99999998889988877543 45699988874 899999998753 34789999999
Q ss_pred eHHHHHHHHHhhCCCCcchhhccccccccc-CceEEEEeCCceeecCCHHHHHHHH
Q 018109 147 KKEILLNLLRWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 147 s~~vl~~ll~~~~~~~~~~~~~~l~~~i~~-~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
++++|..+ ++. ...+ ..++++.++++ .++.+|+++++|+|+|||++|.+|+
T Consensus 169 ~~~~~~~i-~~~--~~~~-l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 169 EPEVLDLI-PKN--EFFD-MPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred cHHHHhhc-CCC--CCcC-HHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 99998754 321 1112 24677777765 5799999999999999999999874
No 49
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=1.1e-16 Score=144.67 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=126.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC---HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEE----E
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD---YMDFVQNHRQSGADITISCLPMDDSRASDFGLMK----I 97 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d---l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~----~ 97 (360)
++|.|||+++|++++.+ |+|+|+.+|.++..+ +.+|++.|.+.+.. ++++.+++.++.++||++. .
T Consensus 107 ~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~ 179 (291)
T COG1210 107 PLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPV 179 (291)
T ss_pred CCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEEECCHHHCcccceEecCccc
Confidence 47999999999999985 999999999988753 79999999998874 6777888776689999987 3
Q ss_pred CCC-CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccc----c
Q 018109 98 NNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIP----A 172 (360)
Q Consensus 98 d~~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~----~ 172 (360)
+++ .+|..++|||+...+ .+++...|-|+|+|++|+. |++..+.. -++-.|+ .
T Consensus 180 ~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRYil~p~IFd~-L~~~~~G~--ggEiQLTDai~~ 237 (291)
T COG1210 180 EKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRYVLTPEIFDI-LEETKPGA--GGEIQLTDAIKK 237 (291)
T ss_pred cCCeEEEEEEEECCCCCCC-------------------CcceeeeeeeecCHHHHHH-HhhCCCCC--CCEeeHHHHHHH
Confidence 333 489999999976653 3689999999999999975 57654331 2233444 4
Q ss_pred ccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCC
Q 018109 173 SANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 208 (360)
Q Consensus 173 ~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~ 208 (360)
+++...+.+|.++|..+|+|++..|++|+..+..+.
T Consensus 238 L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 238 LLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred HHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 556799999999999999999999999999887654
No 50
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.67 E-value=4.7e-16 Score=143.95 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=108.4
Q ss_pred CCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEEE
Q 018109 211 FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMML 276 (360)
Q Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~~ 276 (360)
++.+++++.+.+++.|+|.+.+.+ ++.||++|.|. ++.|. +++||++|.|++++.|+. .+.+
T Consensus 5 ~a~I~~~a~ig~~~~I~p~~~I~~----~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~I 80 (254)
T cd03351 5 TAIVDPGAKIGENVEIGPFCVIGP----NVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEI 80 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECC----CCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEE
Confidence 345566666666666666665533 56677777777 56664 678888888888888864 6777
Q ss_pred CCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEc
Q 018109 277 GADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VIL 349 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig 349 (360)
|++.+..+ +.+++++..++..+.||++|.|. ++.|+++|.||+++.+.+...+..+++|+|+++|+.+++ .||
T Consensus 81 G~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig 160 (254)
T cd03351 81 GDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIG 160 (254)
T ss_pred CCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEEC
Confidence 77666665 56666654443459999999997 899999999999999999988888889999999987764 667
Q ss_pred CCcEeCCCccC
Q 018109 350 KNSVITDGFVI 360 (360)
Q Consensus 350 ~~~~i~~g~~i 360 (360)
+++.|+++++|
T Consensus 161 ~~~~Ig~~s~V 171 (254)
T cd03351 161 RHAMVGGGSGV 171 (254)
T ss_pred CCCEECcCCEE
Confidence 88888888764
No 51
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.62 E-value=3.6e-15 Score=138.10 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=101.2
Q ss_pred CCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec------------eEEE
Q 018109 211 FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD------------TMML 276 (360)
Q Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~------------~~~~ 276 (360)
..++++.+.+.+++.|+|.+.+.+ ++.|++++.|+ ++.|. +++||++|.|++++.|+. .+++
T Consensus 4 ~a~I~~~a~Ig~~~~I~~~~~I~~----~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~I 79 (254)
T TIGR01852 4 TAIIEPGAEIGENVEIGPFCIVGP----GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELII 79 (254)
T ss_pred CCEeCCCCEECCCCEECCCCEECC----CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEE
Confidence 345556666666666666665533 45555566555 44443 577777777777777763 5666
Q ss_pred CCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEc
Q 018109 277 GADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VIL 349 (360)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig 349 (360)
|++....+ +.|+++...|..++.||+++.|. ++.|+++|.||+++.+.+...+..+++|+|+++|+.+++ .||
T Consensus 80 G~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig 159 (254)
T TIGR01852 80 GDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIG 159 (254)
T ss_pred CCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEEC
Confidence 76655555 55555544433348999999996 788888888888888888888888888888888887764 567
Q ss_pred CCcEeCCCccC
Q 018109 350 KNSVITDGFVI 360 (360)
Q Consensus 350 ~~~~i~~g~~i 360 (360)
+++.|+++++|
T Consensus 160 ~~~~Ig~~s~V 170 (254)
T TIGR01852 160 RYAMIGGLSAV 170 (254)
T ss_pred CCCEEeeeeeE
Confidence 78888887764
No 52
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.59 E-value=7.1e-15 Score=133.76 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=73.3
Q ss_pred hcccccccccCceEEEEeCCceeecCCHHHHHHHHHHhhcCCCC-C---CccCCCC-ceeccCCCCCCceecCceeeceE
Q 018109 167 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM-F---SFYDATK-PIYTSRRNLPPSKIDDSKIVDSI 241 (360)
Q Consensus 167 ~~~l~~~i~~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~~~~-~---~~~~~~~-~v~~~~~~~~~~~~~~~~i~~~~ 241 (360)
.+.++.+++.+ ++...|||.|+ ++|+++++++|..... . ....+.. .+..++.+.+.+.+.+ ++.
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g----~v~ 100 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD----QVI 100 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC----CeE
Confidence 46777777655 88889999999 9999999999986421 0 0000001 0122222333222211 345
Q ss_pred ECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee---------eE
Q 018109 242 ISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CI 310 (360)
Q Consensus 242 i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~---------~~ 310 (360)
||++|.|+ ++.|. +++||++|.|++++.|+..+++|++ |.||.++.|.+ +.
T Consensus 101 IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~------------------~~Ig~~~~I~~~~~~~~~~~v~ 162 (231)
T TIGR03532 101 IGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN------------------VHIGAGAVLAGVIEPPSAKPVV 162 (231)
T ss_pred ECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC------------------cEEcCCcEEccccccccCCCeE
Confidence 55555554 44443 4566666666666666555555554 66666666642 55
Q ss_pred ecCCCEECCCcEEec
Q 018109 311 IDKNARIGKNVIIAN 325 (360)
Q Consensus 311 i~~~~~ig~~~~~~~ 325 (360)
||++|.||+++++..
T Consensus 163 IGd~v~IG~gsvI~~ 177 (231)
T TIGR03532 163 IEDNVLIGANAVILE 177 (231)
T ss_pred ECCCcEECCCCEEcC
Confidence 555555555555544
No 53
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.59 E-value=2.6e-14 Score=130.08 Aligned_cols=143 Identities=20% Similarity=0.307 Sum_probs=109.7
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
..+||+++++++...++. +++|++++||++++.++.++++.|.+.+++.++++...+ ..+||.+.+|++++|
T Consensus 80 ~~~g~~~~l~~a~~~l~~-----~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~v~~d~~~~v 151 (231)
T cd04183 80 ETLGAACTVLLAADLIDN-----DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---HPRWSYVKLDENGRV 151 (231)
T ss_pred CCCcHHHHHHHHHhhcCC-----CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---CCCeEEEEECCCCCE
Confidence 357999999999998852 378999999999999999999999887777777666552 347999999888999
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH-HHHHHHHhhC----CCCcc-hhhccccccccc-
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWRF----PTAND-FGSEIIPASANE- 176 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~-vl~~ll~~~~----~~~~~-~~~~~l~~~i~~- 176 (360)
..+.||+.. +.+.++|+|+|+++ .|.+.++... ..... +..+.++.++++
T Consensus 152 ~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g 208 (231)
T cd04183 152 IETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDG 208 (231)
T ss_pred EEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcC
Confidence 999988531 34789999999998 5555555311 11111 224567777765
Q ss_pred CceEEEEe-CCceeecCCHHHH
Q 018109 177 QFLKAYLF-NDYWEDIGTIRSF 197 (360)
Q Consensus 177 ~~I~~~~~-~g~w~digtp~~~ 197 (360)
.++.+|.+ +++|.|+|||++|
T Consensus 209 ~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 209 KKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred CEEEEEEeccccEEEcCChHhc
Confidence 57999999 6999999999987
No 54
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.56 E-value=3.6e-14 Score=125.95 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=99.3
Q ss_pred ccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh-HHHHh
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AEVAS 289 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~ 289 (360)
.+++.+.+.+.+.++++|.+ ..+.|.++.|+++|.|. ++.+.+++||+++.|++++.|...++++++-.... ++++.
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 44555556666667777777 56777778899999998 77788888888888888877776555654311111 11111
Q ss_pred h-hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc-ccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 290 L-LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 290 ~-~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
. +.+| +.+++.+.+.+|+||++|.||+++.+.+...... ..+++|+++|+.++ ++||+++.|++|++|
T Consensus 103 s~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 103 STIGEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred ceEcCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 1 2222 5556666667789999999999998887665544 34778888887775 377899999999875
No 55
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.55 E-value=9.2e-15 Score=132.12 Aligned_cols=139 Identities=17% Similarity=0.275 Sum_probs=105.1
Q ss_pred CCcEEEeeCcccCCCCCC-----------------------ccccccHHHHHHHh--HhhcCCCCCCCCeEEEEcCceee
Q 018109 5 TGNSQVLAATQTPGEAGK-----------------------RWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLY 59 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~-----------------------~~~lGTa~al~~a~--~~i~~~~~~~~~~fLVv~gD~i~ 59 (360)
+|+++|+++.++..+.+. +...|||+|++... ..+ .++|++++||+++
T Consensus 44 ~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~ 116 (217)
T cd04197 44 NGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVS 116 (217)
T ss_pred CCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCcCccchHHHHHhhcccc-------CCCEEEEeCCeee
Confidence 688888887775444221 12368999997653 334 3689999999999
Q ss_pred ecCHHHHHHHHHHc-----CCcEEEEEeecCCCCC----CcccEEEECCC-CceEEEEecCCcccccccccccccccccc
Q 018109 60 RMDYMDFVQNHRQS-----GADITISCLPMDDSRA----SDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSK 129 (360)
Q Consensus 60 ~~dl~~ll~~h~~~-----~a~~tll~~~~~~~~~----~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~ 129 (360)
+.|+.+++++|+++ ++++|+++.+++.++. ..++++.+|++ ++|+.|.|||..+......++..++..++
T Consensus 117 ~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~ 196 (217)
T cd04197 117 NIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNS 196 (217)
T ss_pred ccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCC
Confidence 99999999999984 7899999998876432 23678888765 79999999998766445566776676666
Q ss_pred ccccccCceeeeeEEEEeHHHH
Q 018109 130 QEAEEKPYIASMGVYLFKKEIL 151 (360)
Q Consensus 130 ~~~~~~~~~~~~GIyifs~~vl 151 (360)
... ..+++.++|+|+|+|++|
T Consensus 197 ~~~-i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 197 EVE-IRHDLLDCHIDICSPDVL 217 (217)
T ss_pred cEE-EECCceecCEEEeCCCCC
Confidence 554 468999999999999864
No 56
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.55 E-value=5.7e-14 Score=134.14 Aligned_cols=63 Identities=33% Similarity=0.355 Sum_probs=54.0
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
+.||+++.|. .+.|+++|+||++|.+.+..++.++.+++++++++.++ +.||+++.|+++++|
T Consensus 218 t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 218 TIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred ceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 7777777776 58899999999999999999999999999999997666 377899999998865
No 57
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.53 E-value=9.5e-14 Score=134.06 Aligned_cols=119 Identities=21% Similarity=0.194 Sum_probs=81.5
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec-------------------eEEECCcccchh-HHHHhhhhCCCc
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-------------------TMMLGADFYETD-AEVASLLAEGRV 296 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~-------------------~~~~~~~~~~~~-~~~~~~~~~~~~ 296 (360)
++.||++|.|. +++|. ++.||++|.|++++.|+. .+++|++-.+.. .+|.|+..++
T Consensus 148 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~-- 225 (343)
T PRK00892 148 GVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDD-- 225 (343)
T ss_pred CcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCcccc--
Confidence 34455555555 45553 344666666666666642 345554322211 3344443332
Q ss_pred ceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-----EEcCCcEeCCCccC
Q 018109 297 PVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 297 ~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
+.||++|.|. .+.|+++|+||+++.+...+.+.+++++|++++|+.++. .||+++.|+++++|
T Consensus 226 -t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 -TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred -ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 8888888887 589999999999999999999999999999999987774 57888888888764
No 58
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.53 E-value=1.1e-13 Score=119.45 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=95.8
Q ss_pred CCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhh
Q 018109 215 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 290 (360)
Q Consensus 215 ~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 290 (360)
.+.+.+.+.+.+++++.+ .++.+. +++||++|.|+ ++.|. +++||++|.|++++.|.++++ +++
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~sii-g~~----------- 76 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSII-MDG----------- 76 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEe-cCC-----------
Confidence 344455555556666666 445554 68999999998 77786 699999999999999988765 444
Q ss_pred hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCc------------------ccccccCCceEEeCCeE-----E
Q 018109 291 LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI------------------QEADRSAEGFYIRSGVT-----V 347 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~------------------~~~~~~~~~~~i~~~~~-----~ 347 (360)
+.|++++.+.+++|+++++|++++.+.+.... .....++|+++|+.+++ +
T Consensus 77 -------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ 149 (163)
T cd05636 77 -------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVK 149 (163)
T ss_pred -------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcE
Confidence 99999999999999999999999999763211 01346777777776653 6
Q ss_pred EcCCcEeCCCccC
Q 018109 348 ILKNSVITDGFVI 360 (360)
Q Consensus 348 ig~~~~i~~g~~i 360 (360)
||+++.|++|++|
T Consensus 150 ig~~~~i~agsvV 162 (163)
T cd05636 150 IGPGSWVYPGCVV 162 (163)
T ss_pred ECCCCEECCCcEe
Confidence 6888888888875
No 59
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.53 E-value=4.3e-14 Score=128.58 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=115.4
Q ss_pred CCcEEEeeCcccCCCCCC---------------cc-ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAGK---------------RW-FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ 68 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~---------------~~-~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~ 68 (360)
.|+.+|+++.++..+... .| .+|++++++.+..++. ++|++++||++++. ++++
T Consensus 42 ~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~ 111 (229)
T cd02523 42 AGIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILE 111 (229)
T ss_pred CCCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHH
Confidence 578888888887543211 11 4799999999999883 78999999999865 5677
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeH
Q 018109 69 NHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 148 (360)
Q Consensus 69 ~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~ 148 (360)
.|.++++++++++.+...+....++....+ ++++..+.+||..+. ...+.++|+|+|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~ 170 (229)
T cd02523 112 RLLSSPADNAILVDKKTKEWEDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSP 170 (229)
T ss_pred HHHcCCCCCeEEEccCcccccccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECH
Confidence 778888888988887443323445544333 378999999886542 13578999999999
Q ss_pred HHHHHHHHhh---CC--CCcchhhcccccccccC--ceEEEEeCCceeecCCHHHHHHH
Q 018109 149 EILLNLLRWR---FP--TANDFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEA 200 (360)
Q Consensus 149 ~vl~~ll~~~---~~--~~~~~~~~~l~~~i~~~--~I~~~~~~g~w~digtp~~~~~a 200 (360)
++|..+.+.. .+ ....+.+++++.++++. ++..+.. ++|.|||+|++|.++
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a 228 (229)
T cd02523 171 EDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERA 228 (229)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhh
Confidence 9987654321 11 12233457778877733 4445555 899999999999876
No 60
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.52 E-value=7.8e-14 Score=130.12 Aligned_cols=115 Identities=26% Similarity=0.330 Sum_probs=79.2
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec-------------------eEEECCcccchh--HHHHhh-hhCC
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-------------------TMMLGADFYETD--AEVASL-LAEG 294 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~-------------------~~~~~~~~~~~~--~~~~~~-~~~~ 294 (360)
++.||++|.|. ++.|. ++.||++|.|++++.|+. .+++|++ +|== .+|-|+ +.+
T Consensus 147 ~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~-VeIGanT~Idrga~~d- 224 (338)
T COG1044 147 NVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDD-VEIGANTTIDRGALDD- 224 (338)
T ss_pred CcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCc-eEEcccceeccccccC-
Confidence 45555555555 45553 477777777777777662 3444432 1110 445555 333
Q ss_pred CcceEECCCCeEee-eEecCCCEECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCc
Q 018109 295 RVPVGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGF 358 (360)
Q Consensus 295 ~~~~~ig~~~~i~~-~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~ 358 (360)
|.||++++|.| +.|+|+|+||.+|.+....++.+...||+++.|+..+ ..||+++.|++.+
T Consensus 225 ---TvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~ 291 (338)
T COG1044 225 ---TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARS 291 (338)
T ss_pred ---ceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEeccc
Confidence 88888999975 9999999999999999999999999999999998655 3556666666654
No 61
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.49 E-value=1.3e-13 Score=129.12 Aligned_cols=155 Identities=21% Similarity=0.307 Sum_probs=107.6
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--cCHHHHHHHHHH---cCCcEEEEEeecCCCCCCcccEEEECC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQ---SGADITISCLPMDDSRASDFGLMKINN 99 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--~dl~~ll~~h~~---~~a~~tll~~~~~~~~~~~~g~v~~d~ 99 (360)
.+||++|++.+..++.+. ..++.++|++||+++. .+|.++++.+.+ +++.+|+.+.+... .+.||++..++
T Consensus 83 ~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~--~t~yGyI~~~~ 158 (274)
T cd02509 83 GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP--ETGYGYIEAGE 158 (274)
T ss_pred CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC--CCCeEEEEeCC
Confidence 479999999999988631 1246899999999875 567777765443 66788888877643 47899999875
Q ss_pred CC-----ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcch---------
Q 018109 100 EG-----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF--------- 165 (360)
Q Consensus 100 ~g-----~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~--------- 165 (360)
+. +|.+|.|||+...++ +......+++|+|+|+|+++.|...++...|+....
T Consensus 159 ~~~~~~~~V~~f~EKP~~~~a~-------------~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~ 225 (274)
T cd02509 159 KLGGGVYRVKRFVEKPDLETAK-------------EYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAG 225 (274)
T ss_pred cCCCCceEEeEEEECcChHHHH-------------HHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcC
Confidence 53 899999999865421 111112468999999999998877776654432111
Q ss_pred -------hhccccc---------ccc-cCceEEEEeCCceeecCCHHH
Q 018109 166 -------GSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRS 196 (360)
Q Consensus 166 -------~~~~l~~---------~i~-~~~I~~~~~~g~w~digtp~~ 196 (360)
..+.++. +++ ..++++++.+..|.|+|+|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 226 TDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred CchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 0111221 122 366888899999999999975
No 62
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.46 E-value=3.3e-13 Score=120.34 Aligned_cols=110 Identities=47% Similarity=0.791 Sum_probs=89.7
Q ss_pred ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc
Q 018109 23 RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102 (360)
Q Consensus 23 ~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 102 (360)
++.+|||+||+.+.+++++ ..+++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 90 ~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~-------------------- 146 (200)
T cd02508 90 DWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK-------------------- 146 (200)
T ss_pred CcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh--------------------
Confidence 4568999999999999963 11378999999999999999999999999988887664
Q ss_pred eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCC-CCcchhhcccccccccCceEE
Q 018109 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-TANDFGSEIIPASANEQFLKA 181 (360)
Q Consensus 103 V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~-~~~~~~~~~l~~~i~~~~I~~ 181 (360)
. ++|+|+|++++|..+++.... ...+...++++.++++.++.+
T Consensus 147 -----------~-------------------------~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~ 190 (200)
T cd02508 147 -----------A-------------------------SMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYA 190 (200)
T ss_pred -----------h-------------------------cCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEE
Confidence 1 679999999999766665322 123455688888998899999
Q ss_pred EEeCCceeec
Q 018109 182 YLFNDYWEDI 191 (360)
Q Consensus 182 ~~~~g~w~di 191 (360)
|+++|+|.|+
T Consensus 191 ~~~~g~w~di 200 (200)
T cd02508 191 YEFNGYWADI 200 (200)
T ss_pred EEeCCeEecC
Confidence 9999999986
No 63
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.46 E-value=1.2e-12 Score=120.22 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=107.1
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCcEEEEEeecCC----CCCCcccEEEE
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMDD----SRASDFGLMKI 97 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~ll~~h~~~~a~~tll~~~~~~----~~~~~~g~v~~ 97 (360)
++.||++....+. .++. ...+.+++++||. +.+ .+++++++.|+++++++++++.+..+ ..+..++++ +
T Consensus 72 ~~~gt~~~~~~~~-~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~ 146 (245)
T PRK05450 72 HPSGTDRIAEAAA-KLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-L 146 (245)
T ss_pred CCCchHHHHHHHH-hcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-e
Confidence 3568887554443 3321 0136799999999 554 45899999998777777777666532 235567755 8
Q ss_pred CCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh--hcccccccc
Q 018109 98 NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--SEIIPASAN 175 (360)
Q Consensus 98 d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--~~~l~~~i~ 175 (360)
|++|+|++|.|||..+..+. .+++ ...+.+.++|+|+|++++|..+++.. +...... .++++.+-+
T Consensus 147 d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (245)
T PRK05450 147 DADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSLP-PSPLEKIESLEQLRALEN 214 (245)
T ss_pred CCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhCC-CCccccchhHHHHHHHHC
Confidence 88899999999985332100 0000 00147899999999999998765432 2211111 112332234
Q ss_pred cCceEEEEeCC-ceeecCCHHHHHHHHHHh
Q 018109 176 EQFLKAYLFND-YWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 176 ~~~I~~~~~~g-~w~digtp~~~~~a~~~~ 204 (360)
+.++.++..++ +|.|+|||++|.+|++.+
T Consensus 215 g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 215 GYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 67899999986 999999999999998764
No 64
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.43 E-value=2.5e-12 Score=120.17 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=35.8
Q ss_pred CCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEE-eeeEEecCeEECCCCEEeceEEECCc
Q 018109 210 MFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
+.+.+++++.+..++.++++++|.. ++.||+++.|. +++| .++.||++|.|.++++|.+.+.+|++
T Consensus 104 ~~A~i~~~A~i~~~~~ig~~~vI~~----~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~ 171 (338)
T COG1044 104 PTAVIDPTATIGKNVSIGPNVVIGA----GVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNN 171 (338)
T ss_pred ccccccCcCccCCCCccCCCeEECC----CCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCc
Confidence 3455566666666666666666632 44444444444 3444 24555555555555555555555543
No 65
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.43 E-value=1.7e-12 Score=130.13 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=107.3
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeee--cCHHHHHHHH---HHcCCcEEEEEeecCCCCCCcccEEEEC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNH---RQSGADITISCLPMDDSRASDFGLMKIN 98 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~--~dl~~ll~~h---~~~~a~~tll~~~~~~~~~~~~g~v~~d 98 (360)
..+|||+|+..+..++.+.. ..++.++|++||+++. .+|.++++.+ .++++.+|+...+... .+.||++..+
T Consensus 82 ~~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p--~t~YGyI~~~ 158 (468)
T TIGR01479 82 VGRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHP--ETGYGYIRRG 158 (468)
T ss_pred cccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCC--CCCceEEEeC
Confidence 35899999999887773100 0134599999998654 3488888765 3456666766665543 5789999987
Q ss_pred C------CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcc--------
Q 018109 99 N------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND-------- 164 (360)
Q Consensus 99 ~------~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~-------- 164 (360)
+ .++|.+|.|||+...++ .......+++|+|+|+|+++.|...++...|+...
T Consensus 159 ~~~~~~~~~~V~~f~EKP~~~~a~-------------~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~ 225 (468)
T TIGR01479 159 EPLAGEDVYQVQRFVEKPDLATAQ-------------AYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEA 225 (468)
T ss_pred CccCCCCceEEeEEEECCChHHHH-------------HHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 3 25899999999865421 11111247999999999977666655554332111
Q ss_pred ---------hhhcccc---------cccc-cCceEEEEeCCceeecCCHHHHHHHH
Q 018109 165 ---------FGSEIIP---------ASAN-EQFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 165 ---------~~~~~l~---------~~i~-~~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
+.++.++ .+++ ..++++.+.+..|.|+|+|+++.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 226 SEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred ccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 1112223 1233 35688899999999999999998874
No 66
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.42 E-value=2e-12 Score=117.35 Aligned_cols=170 Identities=22% Similarity=0.313 Sum_probs=120.4
Q ss_pred CCcEEEeeCcccCCCCCC-------------ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAGK-------------RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQN 69 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~-------------~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~ 69 (360)
.|+.+++++.++..+... +...||+++++++..++++ ..++|++++||. +...++.++++.
T Consensus 39 ~~i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~ 114 (229)
T cd02540 39 LGPDRIVVVVGHGAEQVKKALANPNVEFVLQEEQLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEA 114 (229)
T ss_pred CCCCeEEEEECCCHHHHHHHhCCCCcEEEECCCCCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHH
Confidence 567777777766433211 2236999999999999862 137899999998 446678999999
Q ss_pred HHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHH
Q 018109 70 HRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 149 (360)
Q Consensus 70 h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~ 149 (360)
|++.+++++++..+.++ +..||.+..+++++|..+.|||.....+ ....++++|+|+|+++
T Consensus 115 ~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~ 175 (229)
T cd02540 115 HREAGADVTVLTAELED--PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAE 175 (229)
T ss_pred HHhcCCcEEEEEEEcCC--CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHH
Confidence 98888888887777665 6689988787778999999987532100 0135789999999998
Q ss_pred HHHHHHHhhCCC---Ccchhhcccccccc-cCceEEEEeCCc--eeecCCHHHH
Q 018109 150 ILLNLLRWRFPT---ANDFGSEIIPASAN-EQFLKAYLFNDY--WEDIGTIRSF 197 (360)
Q Consensus 150 vl~~ll~~~~~~---~~~~~~~~l~~~i~-~~~I~~~~~~g~--w~digtp~~~ 197 (360)
.|..+++..... ...+..+.++.+++ +.+|.+|..+|| |+.+|+|.++
T Consensus 176 ~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 176 FLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 776666653211 11223466666665 467999999764 6778888753
No 67
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.41 E-value=3.7e-12 Score=101.69 Aligned_cols=102 Identities=29% Similarity=0.473 Sum_probs=84.5
Q ss_pred Ccee-cCceeeceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe
Q 018109 229 PSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 307 (360)
Q Consensus 229 ~~~~-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~ 307 (360)
|+++ +++.+.+++||++|.|.++.+.++++++++.|++++.|.+++++.+ +.|++++.+.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 3455 5677889999999999988899999999999999999999988765 9999999999
Q ss_pred eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcE
Q 018109 308 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 353 (360)
Q Consensus 308 ~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~ 353 (360)
+|+||+++.|++++++.+...... .++.....+.++|++++.
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~ 103 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDR----ARFYVTEDGIVVVGKGMV 103 (104)
T ss_pred eEEECCCCEECCCCEECCCccccc----ccceEcCCeEEEEecccC
Confidence 999999999999999988633221 144455677778877764
No 68
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.40 E-value=2.9e-12 Score=114.71 Aligned_cols=145 Identities=22% Similarity=0.207 Sum_probs=94.0
Q ss_pred ccCCCCceeccCCCCCCcee-cCcee-eceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEec----------------
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---------------- 272 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i-~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~---------------- 272 (360)
.+++.+.+.+++.|++.+++ .++.| .++.||++|.|. ++.|. +++||+++.|++++.|+.
T Consensus 9 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 88 (205)
T cd03352 9 SIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIP 88 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcC
Confidence 34445555555555666655 33555 377888888887 66665 478888888888877742
Q ss_pred ---eEEECCcccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeE-
Q 018109 273 ---TMMLGADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT- 346 (360)
Q Consensus 273 ---~~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 346 (360)
.++++++-.... ..+.+.... .+.||+++.+. ++.|++++.||+++.+.+++.+.++..|+++++|+.+++
T Consensus 89 ~~~~v~Ig~~~~Ig~~~~i~~~~~~---~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v 165 (205)
T cd03352 89 QLGGVIIGDDVEIGANTTIDRGALG---DTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGI 165 (205)
T ss_pred CcceEEECCCEEECCCCEEeccccC---CeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEE
Confidence 244444311111 111111111 26777777776 578888888888888888888877888888888887774
Q ss_pred ----EEcCCcEeCCCccC
Q 018109 347 ----VILKNSVITDGFVI 360 (360)
Q Consensus 347 ----~ig~~~~i~~g~~i 360 (360)
+||+++.|++++++
T Consensus 166 ~~~~~ig~~~~i~~~s~v 183 (205)
T cd03352 166 AGHLTIGDGVVIGAGSGV 183 (205)
T ss_pred eCCcEECCCCEEcCCCEE
Confidence 56777777777753
No 69
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.39 E-value=4.7e-12 Score=115.87 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=104.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHc-CCcEEEEEeecCCCC-CCcccE--EEEC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQS-GADITISCLPMDDSR-ASDFGL--MKIN 98 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~-~a~~tll~~~~~~~~-~~~~g~--v~~d 98 (360)
.+||++ +..+...+.. ..+.||+++||. +...++..+++.|++. ++++++++.+++++. ...++. +..+
T Consensus 73 ~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 147 (239)
T cd02517 73 PSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD 147 (239)
T ss_pred CchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence 468886 5555555642 126799999997 4456689999999876 778888888876522 013343 5567
Q ss_pred CCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh--cccccccc-
Q 018109 99 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS--EIIPASAN- 175 (360)
Q Consensus 99 ~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~--~~l~~~i~- 175 (360)
++++|+.|.++|.....+ +.. ....+.++|+|+|++++|..+.... .......+ +++ .+++
T Consensus 148 ~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 211 (239)
T cd02517 148 KDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAALP-PSPLEQIESLEQL-RALEN 211 (239)
T ss_pred CCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhCC-CchhhhhhhHHHH-HHHHC
Confidence 778999998765432100 000 0146899999999999998765431 11111111 122 3344
Q ss_pred cCceEEEEeCCceeecCCHHHHHHHHH
Q 018109 176 EQFLKAYLFNDYWEDIGTIRSFFEANL 202 (360)
Q Consensus 176 ~~~I~~~~~~g~w~digtp~~~~~a~~ 202 (360)
+.++.++..+++|.|+|||++|.++++
T Consensus 212 g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 212 GYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred CCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 566999999899999999999999874
No 70
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.33 E-value=1.6e-11 Score=106.21 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=66.1
Q ss_pred ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEeceEE----------ECCcccchhHHHHhhhhCCCcceEECCC
Q 018109 239 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDTMM----------LGADFYETDAEVASLLAEGRVPVGIGEN 303 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 303 (360)
++.||++|.|. ++.+. .++||++|.|++++.|.+++. +|++ +.+..+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~------------------~~i~~~ 78 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSN------------------NVFEVG 78 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCC------------------CEECCC
Confidence 56777777777 56563 468999999999999987643 5543 666667
Q ss_pred CeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCC
Q 018109 304 TKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 357 (360)
Q Consensus 304 ~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g 357 (360)
+.|.+++||++|.||+++++.....+++++.++.++.|..+. .|++++.++++
T Consensus 79 ~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~-~i~~~~vi~g~ 131 (164)
T cd04646 79 CKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSE-ILPENTVIYGA 131 (164)
T ss_pred cEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCc-EECCCeEEeCC
Confidence 777788888888888888887655444444444444444332 23444444443
No 71
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.32 E-value=1.5e-11 Score=109.10 Aligned_cols=124 Identities=21% Similarity=0.298 Sum_probs=83.1
Q ss_pred CccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhh
Q 018109 212 SFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 290 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 290 (360)
..+.+...++.++.+.+.+++.+ ++.||++|.|+ ++.|.++.||+++.|++++.|.++++ +++
T Consensus 10 ~~~~~~v~ig~~~~I~~~a~i~~----~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i-g~~----------- 73 (193)
T cd03353 10 TYIDGDVEIGVDVVIDPGVILEG----KTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVI-GNG----------- 73 (193)
T ss_pred EEEcCCeEECCCcEECCCCEEeC----cCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEE-CCC-----------
Confidence 33444455555555555555533 78899999998 78888889999999999999987654 544
Q ss_pred hhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecC-----------CCcccccccCCceEEeCCe------------E
Q 018109 291 LAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------T 346 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~ 346 (360)
+.|++++.|. +++|+++++|++++.+.+. ..+ .++.+++++.|++++ +
T Consensus 74 -------~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~ 145 (193)
T cd03353 74 -------ATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKHRT 145 (193)
T ss_pred -------CEECCccEEcCccEECCCCEECCcEEEecceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCccccCC
Confidence 7788888876 6777777777776665432 111 134555666655543 3
Q ss_pred EEcCCcEeCCCcc
Q 018109 347 VILKNSVITDGFV 359 (360)
Q Consensus 347 ~ig~~~~i~~g~~ 359 (360)
+||+++.||++++
T Consensus 146 vigd~~~ig~~~~ 158 (193)
T cd03353 146 VIGDNVFIGSNSQ 158 (193)
T ss_pred EECCCeEEccCCE
Confidence 5677777777654
No 72
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.29 E-value=1.4e-11 Score=114.15 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=83.4
Q ss_pred cCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-------------eeEEecCeEECCCCEEec-------eEEECCc
Q 018109 223 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKD-------TMMLGAD 279 (360)
Q Consensus 223 ~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-------------~~~ig~~~~i~~~~~i~~-------~~~~~~~ 279 (360)
.+.+++++.+ ..+.+. ++.||++|.|. ++++. +++||++|.|++++.|.. .+.+|++
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~ 107 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence 3333344444 334443 68888888888 77774 588999999999999984 3566665
Q ss_pred ccchh-HHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 280 FYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
.+..+ +++ .. +|.||++|.|. ++.++++++||+++.++..+.+..+++|+++++|+.++++
T Consensus 108 ~~I~~~~~I----~~---~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 108 NLLMAYSHI----AH---DCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred CEECCCCEE----cc---CCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 33332 111 11 17777777776 6888888888888999888888888899999999888754
No 73
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.28 E-value=2.9e-11 Score=111.99 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=57.1
Q ss_pred ceEECCCCEEc-ceEEe-------------eeEEecCeEECCCCEEeceEEECCccc-chh-HHHHhh--hhCCCcceEE
Q 018109 239 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKDTMMLGADFY-ETD-AEVASL--LAEGRVPVGI 300 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-------------~~~ig~~~~i~~~~~i~~~~~~~~~~~-~~~-~~~~~~--~~~~~~~~~i 300 (360)
++.||++|.|. ++.|. +++||++|.|++++.|...+..+...+ +.+ +.+..+ +.. .|.|
T Consensus 47 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~---~~~I 123 (254)
T cd03351 47 PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAH---DCVI 123 (254)
T ss_pred CeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECC---CCEE
Confidence 56666666666 55553 466777777777777766655442111 111 111100 001 1444
Q ss_pred CCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 301 GENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 301 g~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
|++|.|. ++.+++++.||++|.++..+.+..++.|++++.|+.++++
T Consensus 124 G~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 124 GNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171 (254)
T ss_pred CCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEE
Confidence 4444443 4555556666666666666666666667777776666543
No 74
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.27 E-value=1.2e-11 Score=111.84 Aligned_cols=117 Identities=15% Similarity=0.265 Sum_probs=89.7
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHH--HHHcCCcEEEEEeecCCCC-------CCcccEE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSR-------ASDFGLM 95 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~--h~~~~a~~tll~~~~~~~~-------~~~~g~v 95 (360)
..|||++++++.++++ ++|+|++||+++++|+.++++. +..+++++++++...+.+. ...++++
T Consensus 88 ~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (216)
T cd02507 88 SAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVI 160 (216)
T ss_pred CCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEE
Confidence 4699999999998884 6899999999999999999965 4455566666555443221 4568888
Q ss_pred EECCC---CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHH
Q 018109 96 KINNE---GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 151 (360)
Q Consensus 96 ~~d~~---g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl 151 (360)
.+|++ .+++.+.++++.. +.+.+...+++.+|+.. ..+++.++|+|+|++++|
T Consensus 161 ~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~~-i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 161 AVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPNVT-IRTDLLDCHIYICSPDVL 216 (216)
T ss_pred EEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCCEE-EEcCcccccEEEecCcCC
Confidence 88876 4777777777653 34457888888887764 468999999999999864
No 75
>PLN02296 carbonate dehydratase
Probab=99.27 E-value=3.8e-11 Score=111.41 Aligned_cols=105 Identities=18% Similarity=0.308 Sum_probs=72.0
Q ss_pred CceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEe----------ceEEECCcccc
Q 018109 218 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK----------DTMMLGADFYE 282 (360)
Q Consensus 218 ~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~----------~~~~~~~~~~~ 282 (360)
..+++++.+.+.+.+.+ ++.||++|.|. +++|. +.+||++|.|+++|.|. ..+++|++
T Consensus 53 p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~--- 125 (269)
T PLN02296 53 PVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN--- 125 (269)
T ss_pred CccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC---
Confidence 33444455555544432 56777777777 66665 35899999999999996 23566765
Q ss_pred hhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 283 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
+.||++|.|.+|+||++|.||.++++.++..++.++.|+.++.+.++
T Consensus 126 ---------------v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~ 172 (269)
T PLN02296 126 ---------------VTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQN 172 (269)
T ss_pred ---------------CEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecC
Confidence 88999998888999999999999988876554444444444444333
No 76
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.26 E-value=6.3e-11 Score=101.47 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=65.8
Q ss_pred ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec----eEEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.||++|.|+ ++.|. .+.||++|.|+++|.|+. .++++++ +.|++++.+.++
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~Ig~~~~i~~~ 79 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN------------------GHIGHGAILHGC 79 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC------------------CEECCCcEEECC
Confidence 56777777776 66665 378999999999999942 2445554 889999988899
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
+||++|.||.++.+.+.. .++++++|+.++ ++.++..|++++
T Consensus 80 ~Ig~~~~Ig~~~~I~~g~------~Ig~~~~Ig~~s-~v~~~~~i~~~~ 121 (155)
T cd04745 80 TIGRNALVGMNAVVMDGA------VIGEESIVGAMA-FVKAGTVIPPRS 121 (155)
T ss_pred EECCCCEECCCCEEeCCC------EECCCCEECCCC-EeCCCCEeCCCC
Confidence 999999999998887754 444445554443 223444444443
No 77
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.25 E-value=2.9e-11 Score=110.86 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=16.9
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
++|+++|.||+++.|.++..++++++|+.+++|++++
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~ 210 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQST 210 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCC
Confidence 4444444444444444444444444444444444443
No 78
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.25 E-value=5.1e-11 Score=105.45 Aligned_cols=100 Identities=16% Similarity=0.314 Sum_probs=70.0
Q ss_pred eeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec----eEEECCcccchhHHHHhh
Q 018109 220 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASL 290 (360)
Q Consensus 220 v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~ 290 (360)
+++++.|.+.+.+.+ ++.||++|.|+ +++|. ..+||++|.|+++|.|+. .++++++
T Consensus 11 i~~~~~I~~~a~I~G----~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~----------- 75 (192)
T TIGR02287 11 VHPEAYVHPTAVLIG----DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN----------- 75 (192)
T ss_pred CCCCcEECCCCEEEe----eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-----------
Confidence 344444444444422 67788888888 77765 478999999999999952 2455554
Q ss_pred hhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEE
Q 018109 291 LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI 341 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i 341 (360)
+.|++++.|.+|+|+++|.||.++.+.+...+++++.+++++.+
T Consensus 76 -------~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V 119 (192)
T TIGR02287 76 -------GHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFV 119 (192)
T ss_pred -------CEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEE
Confidence 89999999999999999999999988775444444444444333
No 79
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.24 E-value=5.3e-11 Score=118.92 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=64.5
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCC
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNA 315 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~ 315 (360)
++.|+++|.|. ++.|. ++.||++|.|++++.|.+ +++|++ |.||+++.|. +|.||++|
T Consensus 268 ~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~-~~Ig~~------------------~~Ig~~~~i~~~~~ig~~~ 328 (446)
T PRK14353 268 DTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEG-AHVGEG------------------AEVGPYARLRPGAELGEGA 328 (446)
T ss_pred ceEECCCCEECCCCEECCCCEECCCCEECCCeEEec-cEECCC------------------cEECCCeEEeccceecCCe
Confidence 45566666666 44443 566777777777777755 455554 7777777776 67777777
Q ss_pred EECCCcEEecCC-----Cc-----ccccccCCceEEeCCe------------EEEcCCcEeCCCccC
Q 018109 316 RIGKNVIIANSE-----GI-----QEADRSAEGFYIRSGV------------TVILKNSVITDGFVI 360 (360)
Q Consensus 316 ~ig~~~~~~~~~-----~~-----~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~~i 360 (360)
.||+++.+.+.. .+ -++..|++++.|+.++ ++||+++.||++++|
T Consensus 329 ~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i 395 (446)
T PRK14353 329 KVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSAL 395 (446)
T ss_pred EEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEE
Confidence 777777664311 10 1123566666666653 357888888887754
No 80
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.24 E-value=1.1e-10 Score=106.79 Aligned_cols=154 Identities=15% Similarity=0.262 Sum_probs=101.2
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCC-cEEEEEeecCCC----CCCcccEEEE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGA-DITISCLPMDDS----RASDFGLMKI 97 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a-~~tll~~~~~~~----~~~~~g~v~~ 97 (360)
..||++ +..+...++ .+.|++++||. +...++.++++.|++.+. .+++++.+.+.. ++..+++ ..
T Consensus 74 ~~g~~~-~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~ 145 (238)
T PRK13368 74 LSGTDR-LAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VV 145 (238)
T ss_pred CCccHH-HHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EE
Confidence 357874 666766663 37899999996 567779999999977653 556666655431 1334444 44
Q ss_pred CCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCC-cchhh-ccccccc-
Q 018109 98 NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-NDFGS-EIIPASA- 174 (360)
Q Consensus 98 d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~-~~~~~-~~l~~~i- 174 (360)
+++|+++.+.|+|.....+ .. ....+.++|+|+|++++|..+ +...... ..+.. +++ .++
T Consensus 146 ~~~g~v~~~~~~~~~~~~~--------------~~-~~~~~~n~giy~~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~ 208 (238)
T PRK13368 146 DKNGDALYFSRSPIPSRRD--------------GE-SARYLKHVGIYAFRRDVLQQF-SQLPETPLEQIESLEQL-RALE 208 (238)
T ss_pred CCCCCEEEeeCCCCCCCCC--------------CC-CCceeEEEEEEEeCHHHHHHH-HcCCCChhhhhhhHHHH-HHHH
Confidence 5678999998765221100 00 013588999999999999864 3321111 01111 344 444
Q ss_pred ccCceEEEEeCCceeecCCHHHHHHHHHH
Q 018109 175 NEQFLKAYLFNDYWEDIGTIRSFFEANLA 203 (360)
Q Consensus 175 ~~~~I~~~~~~g~w~digtp~~~~~a~~~ 203 (360)
.+.++.+|..+++|+|||+|++|.+++..
T Consensus 209 ~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 209 HGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 46679999989999999999999998763
No 81
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.23 E-value=7.3e-11 Score=101.90 Aligned_cols=103 Identities=16% Similarity=0.249 Sum_probs=78.8
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.|++++.|. ++.+. .++||++|.|++++.|+..++++++ +.|++++.|.+|+|++++.
T Consensus 17 ~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~siig~~~~ 78 (163)
T cd05636 17 PVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDG------------------CVVGNSVEVKNSIIMDGTK 78 (163)
T ss_pred CeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCC------------------CEECCCcEEeeeEecCCCE
Confidence 45666666666 55554 6899999999999999987777776 9999999999999999999
Q ss_pred ECCCcEEecCCCcccccccCCceEEeC-----------------------CeEEEcCCcEeCCCccC
Q 018109 317 IGKNVIIANSEGIQEADRSAEGFYIRS-----------------------GVTVILKNSVITDGFVI 360 (360)
Q Consensus 317 ig~~~~~~~~~~~~~~~~~~~~~~i~~-----------------------~~~~ig~~~~i~~g~~i 360 (360)
|+.++.+.+ ..++.++.+++++.+.. .-++||+++.||++++|
T Consensus 79 I~~~~~i~~-siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i 144 (163)
T cd05636 79 VPHLNYVGD-SVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSL 144 (163)
T ss_pred eccCCEEec-CEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEE
Confidence 999888865 45666667777766532 01467788888777653
No 82
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.23 E-value=7e-11 Score=109.86 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=20.2
Q ss_pred EECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCcc
Q 018109 316 RIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGFV 359 (360)
Q Consensus 316 ~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~ 359 (360)
.||+++.+..++.+..++.+++++.++.++ ++||+++.||++++
T Consensus 107 ~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~ 155 (262)
T PRK05289 107 RIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTA 155 (262)
T ss_pred EECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecce
Confidence 344444444433333334444444444333 34566666655554
No 83
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.21 E-value=5e-11 Score=119.15 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=75.3
Q ss_pred cCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceE
Q 018109 223 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 299 (360)
Q Consensus 223 ~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (360)
.+.+++++.+ .++.|. ++.||++|.|+ ++.|.+++||++|.|++++.|.++++ +++ +.
T Consensus 261 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~i-g~~------------------~~ 321 (451)
T TIGR01173 261 TVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEI-GEG------------------CD 321 (451)
T ss_pred ccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccc-cCC------------------cE
Confidence 3444555555 345554 57788888888 77777888888888888888877544 433 77
Q ss_pred ECCCCeEe-eeEecCCCEECCCcEEecC-----------CCcccccccCCceEEeCCe------------EEEcCCcEeC
Q 018109 300 IGENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------TVILKNSVIT 355 (360)
Q Consensus 300 ig~~~~i~-~~~i~~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~~ig~~~~i~ 355 (360)
||+++.|. +++|+++|+||.++.+.+. ..+ +++.|++++.|++++ ++||+++.||
T Consensus 322 Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig 400 (451)
T TIGR01173 322 VGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIG 400 (451)
T ss_pred ECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEEC
Confidence 77777776 5666666666666544321 111 134566666666553 4577777777
Q ss_pred CCccC
Q 018109 356 DGFVI 360 (360)
Q Consensus 356 ~g~~i 360 (360)
++++|
T Consensus 401 ~~~~i 405 (451)
T TIGR01173 401 SNTQL 405 (451)
T ss_pred CCCEE
Confidence 77653
No 84
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.21 E-value=5.7e-11 Score=119.06 Aligned_cols=119 Identities=20% Similarity=0.314 Sum_probs=83.1
Q ss_pred ccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcce
Q 018109 222 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 298 (360)
Q Consensus 222 ~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (360)
+.+.+++++.+ ..+.+. ++.||++|.|+ ++.|.+++||++|.|++++.|.++++..+ +
T Consensus 268 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~ 328 (456)
T PRK14356 268 PRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------C 328 (456)
T ss_pred CCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------c
Confidence 34455555555 233343 68899999998 88889999999999999999976655443 8
Q ss_pred EECCCCeEe-eeEecCCCEECCCcEEecCC-----Cc-----ccccccCCceEEeCCe------------EEEcCCcEeC
Q 018109 299 GIGENTKIK-ECIIDKNARIGKNVIIANSE-----GI-----QEADRSAEGFYIRSGV------------TVILKNSVIT 355 (360)
Q Consensus 299 ~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~-----~~-----~~~~~~~~~~~i~~~~------------~~ig~~~~i~ 355 (360)
.||+++.|. +++||++|+||.++.+.++. .+ -+++.+++++.|++++ ++||+++.+|
T Consensus 329 ~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig 408 (456)
T PRK14356 329 SVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIG 408 (456)
T ss_pred EECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEc
Confidence 899988887 78888888888887665421 11 1134566666666663 3567777777
Q ss_pred CCcc
Q 018109 356 DGFV 359 (360)
Q Consensus 356 ~g~~ 359 (360)
++++
T Consensus 409 ~~~~ 412 (456)
T PRK14356 409 SNTA 412 (456)
T ss_pred CCCE
Confidence 6664
No 85
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.21 E-value=2.7e-11 Score=109.22 Aligned_cols=117 Identities=22% Similarity=0.352 Sum_probs=92.4
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCC-----------CCccc
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR-----------ASDFG 93 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~-----------~~~~g 93 (360)
.+|||++|+++.+.+. ++|+|++||.+++.++.++++.|+++++.+|+++.+.+.+. ...+.
T Consensus 86 ~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (214)
T cd04198 86 DMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERD 158 (214)
T ss_pred CcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCCCc
Confidence 4799999999998874 68999999999999999999999999999999988764211 23467
Q ss_pred EEEECC-CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHH
Q 018109 94 LMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 151 (360)
Q Consensus 94 ~v~~d~-~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl 151 (360)
++.+|+ +++++.+....+.. ..+.++..+++.+|+.. ..+++.++|+|+|++++|
T Consensus 159 ~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~~~-i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 159 VIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPRVT-ITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred eEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCCEE-EEcCcccceEEEEEeeeC
Confidence 777774 46888776543322 34566888888887664 478999999999999864
No 86
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.21 E-value=2.9e-10 Score=97.13 Aligned_cols=97 Identities=25% Similarity=0.405 Sum_probs=69.8
Q ss_pred ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEece----EEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.||++|.|. ++.|. .++||+++.|++++.|..+ ++++++ +.|+.+|.+.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 56777777777 66664 3589999999999999875 566765 899999999999
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
+|++++.|++++.+.....++++++++.++.+.++. .+++++.+
T Consensus 79 ~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~-~i~~~~~~ 122 (153)
T cd04645 79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGK-VIPPGSLV 122 (153)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCCEECCCC-EeCCCCEE
Confidence 999999999999887655555555555554444442 23344433
No 87
>PLN02472 uncharacterized protein
Probab=99.20 E-value=1.5e-10 Score=106.14 Aligned_cols=99 Identities=15% Similarity=0.272 Sum_probs=71.7
Q ss_pred ceeccCCCCCCceecCceeeceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec----------eEEECCcccch
Q 018109 219 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----------TMMLGADFYET 283 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----------~~~~~~~~~~~ 283 (360)
.+..++.+.+++.+.+ ++.||++|.|. +++|. ..+||+++.|+++|.|+. .+++|++
T Consensus 61 ~i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~---- 132 (246)
T PLN02472 61 KVAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY---- 132 (246)
T ss_pred ccCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC----
Confidence 3455555555555533 67788888888 66664 378999999999999962 4666765
Q ss_pred hHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCce
Q 018109 284 DAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGF 339 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 339 (360)
+.||++|.|.+|+|+++|.||.++++.+...++.++.+++++
T Consensus 133 --------------v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gs 174 (246)
T PLN02472 133 --------------VTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGS 174 (246)
T ss_pred --------------CEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCC
Confidence 899999999999999999999999988765444444444433
No 88
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.20 E-value=1.9e-10 Score=99.71 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=67.2
Q ss_pred eeccCCCCCCceecCceeeceEECCCCEEc-ceEEe-----eeEEecCeEECCCCEEe----ceEEECCcccchhHHHHh
Q 018109 220 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLK----DTMMLGADFYETDAEVAS 289 (360)
Q Consensus 220 v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~----~~~~~~~~~~~~~~~~~~ 289 (360)
+++++.|.+.+.+.+ ++.||++|.|+ ++.|. ++.||++|.|++++.|. ..+.+|++
T Consensus 5 ig~~~~I~~~a~i~~----~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~---------- 70 (167)
T cd00710 5 IDPSAYVHPTAVVIG----DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN---------- 70 (167)
T ss_pred eCCCeEECCCCEEEe----eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCC----------
Confidence 344444444444422 45566666666 44443 36788888888887774 34556664
Q ss_pred hhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 290 LLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 290 ~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
+.|+.++.|. +++||++|.||.++.+.+ ..+++++.++.++.|. + ..|++++.|+++++
T Consensus 71 --------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~ 130 (167)
T cd00710 71 --------VSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAV 130 (167)
T ss_pred --------ceECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCE
Confidence 7777777776 477777777777777753 3334444444444432 2 24456666666654
No 89
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.20 E-value=2.1e-10 Score=98.10 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=64.7
Q ss_pred ceEECCCCEEc-ceEEee----eEEecCeEECCCCEEece----EEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~----~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.||++|.|. ++.|.. .+||++|.|+++|.|... ++++++ +.|++++.+.++
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 79 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGA 79 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECc
Confidence 56777888877 666654 589999999999999863 667765 899999999999
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEe
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIR 342 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~ 342 (360)
+||++|.|++++.+.....++.+.+++.++.+.
T Consensus 80 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~ 112 (154)
T cd04650 80 KVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVT 112 (154)
T ss_pred EECCCCEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 999999999999987754444444444443333
No 90
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.19 E-value=7.9e-11 Score=108.92 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=15.4
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCccccccc
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRS 335 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~ 335 (360)
+.||++|.|+ +|.|..++.||++++++..+.+.....|
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I 215 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKI 215 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEE
Confidence 4444444443 3444444444444444443333333333
No 91
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.19 E-value=1.1e-10 Score=104.34 Aligned_cols=27 Identities=22% Similarity=0.081 Sum_probs=14.9
Q ss_pred eEECCCCeEeeeEecCCCEECCCcEEe
Q 018109 298 VGIGENTKIKECIIDKNARIGKNVIIA 324 (360)
Q Consensus 298 ~~ig~~~~i~~~~i~~~~~ig~~~~~~ 324 (360)
+.|+++|.+.+++||++|.|++++.+.
T Consensus 43 s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 43 SYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred CEECCCcEEeeeEECCCCEECCCCEEC
Confidence 555555555555555555555555554
No 92
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.19 E-value=1.7e-10 Score=87.65 Aligned_cols=65 Identities=22% Similarity=0.495 Sum_probs=40.5
Q ss_pred ECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCC
Q 018109 242 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 320 (360)
Q Consensus 242 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~ 320 (360)
|++++.|. ++.+.++.||+++.|++++.|+++++..+ +.|+++|.|.++++++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 44555554 44455566666777777776666555443 66777777766777777776666
Q ss_pred cEEec
Q 018109 321 VIIAN 325 (360)
Q Consensus 321 ~~~~~ 325 (360)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 66643
No 93
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.18 E-value=1.4e-10 Score=107.14 Aligned_cols=116 Identities=16% Similarity=0.268 Sum_probs=61.9
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEec---
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIID--- 312 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~--- 312 (360)
.+.|++++.|+ ++.|. +++|..++.|++++.|.+.+.+|..-+.- ...+....+.||++|.|. ++.|.
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~------~~~g~~~~v~IG~~~~I~e~vtI~~gt 96 (255)
T PRK12461 23 FAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDF------TYKGEESRLEIGDRNVIREGVTIHRGT 96 (255)
T ss_pred CCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccc------cccCccceeEECCceEECCccEEecCc
Confidence 34455555554 44443 45555555555555555555555310000 000011126667666664 34443
Q ss_pred ---CCCEECCCcEEecCCCcccccccCCceEEeCCe-----EEEcCCcEeCCCccC
Q 018109 313 ---KNARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----TVILKNSVITDGFVI 360 (360)
Q Consensus 313 ---~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ig~~~~i~~g~~i 360 (360)
..+.||+++.+.++..+..++.|+++++|+.++ ++||+++.||++++|
T Consensus 97 ~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V 152 (255)
T PRK12461 97 KGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLV 152 (255)
T ss_pred ccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEE
Confidence 345666666666666666666777777776554 467777777777653
No 94
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.17 E-value=1.6e-10 Score=116.68 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=80.6
Q ss_pred eccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcc
Q 018109 221 YTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 297 (360)
Q Consensus 221 ~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
.+.+.|+.+|.| +++.|. ++.||++|.|+ ++.|.+++||++|.|++++.|.++ ++|++
T Consensus 268 ~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~-~ig~~------------------ 328 (481)
T PRK14358 268 EDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGA-EVGAG------------------ 328 (481)
T ss_pred cCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCC-eEeCc------------------
Confidence 344455555666 445554 57789999998 788888999999999999999765 55654
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCC-----Ccc-----cccccCCceEEeCCe------------EEEcCCcEe
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSE-----GIQ-----EADRSAEGFYIRSGV------------TVILKNSVI 354 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~-----~~~-----~~~~~~~~~~i~~~~------------~~ig~~~~i 354 (360)
+.|++++.+. +++||++++|+.++.+.+.. .++ +++.|++++.|++++ ++||+++.|
T Consensus 329 ~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~i 408 (481)
T PRK14358 329 SDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFI 408 (481)
T ss_pred eEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEE
Confidence 8888888886 68888888888866654321 111 123455555555443 256677777
Q ss_pred CCCcc
Q 018109 355 TDGFV 359 (360)
Q Consensus 355 ~~g~~ 359 (360)
|++++
T Consensus 409 g~~~~ 413 (481)
T PRK14358 409 GSNTT 413 (481)
T ss_pred cCCCE
Confidence 76664
No 95
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.17 E-value=2.4e-10 Score=96.10 Aligned_cols=33 Identities=9% Similarity=0.277 Sum_probs=14.5
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK 271 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~ 271 (360)
++.|+++|.|. ++.|. +++||++|.|++++.|+
T Consensus 31 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 34455555555 33331 34444444444444443
No 96
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.16 E-value=1.8e-10 Score=110.10 Aligned_cols=122 Identities=23% Similarity=0.190 Sum_probs=85.2
Q ss_pred ceeecCCHHHHHHHHHHhhcCC-CCCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEE-eeeEEecC
Q 018109 187 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIR 261 (360)
Q Consensus 187 ~w~digtp~~~~~a~~~~l~~~-~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~ 261 (360)
.+.-+.+|...+..-..++.+. .....+++++.+++++.+++++.+ +.+.|. ++.||++|.|. ++.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 4666788876554444444322 223456667777777666666666 445553 67888888888 6777 37889999
Q ss_pred eEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe---------------------eeEecCCCEECCC
Q 018109 262 SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK---------------------ECIIDKNARIGKN 320 (360)
Q Consensus 262 ~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~---------------------~~~i~~~~~ig~~ 320 (360)
|.|++++.|...+++|++ |.|+++|.|+ +++||+++.||++
T Consensus 146 ~~I~~~~~I~~~~~IG~~------------------~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~ 207 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKN------------------VIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGAN 207 (324)
T ss_pred ceECCCcEECCCCEECCC------------------CEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCC
Confidence 999999999877788876 7777777773 4788888888888
Q ss_pred cEEecC
Q 018109 321 VIIANS 326 (360)
Q Consensus 321 ~~~~~~ 326 (360)
+++...
T Consensus 208 ~~I~r~ 213 (324)
T TIGR01853 208 TTIDRG 213 (324)
T ss_pred CEEecC
Confidence 887543
No 97
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=1.2e-10 Score=111.40 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=78.4
Q ss_pred eeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCc
Q 018109 220 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRV 296 (360)
Q Consensus 220 v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
+..++.|++.+.| .++.++ ++.||++|+|+ ++.|++|.||+++.|.++++|+++.+-.+
T Consensus 265 i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~------------------ 326 (460)
T COG1207 265 IRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG------------------ 326 (460)
T ss_pred EcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC------------------
Confidence 3444555666666 445554 66777777777 66677777777777777777777655433
Q ss_pred ceEECCCCeEe-eeEecCCCEECCCcEEecCCCcc----------cccccCCceEEeCCeE------------EEcCCcE
Q 018109 297 PVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ----------EADRSAEGFYIRSGVT------------VILKNSV 353 (360)
Q Consensus 297 ~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~----------~~~~~~~~~~i~~~~~------------~ig~~~~ 353 (360)
+.||+.++|+ ++.++.+++||..|.+.++..-. ++..||+++.||+|++ +||+++.
T Consensus 327 -~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vF 405 (460)
T COG1207 327 -ATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVF 405 (460)
T ss_pred -cccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcE
Confidence 7888888887 78888888888888888753211 1225555666666552 6666666
Q ss_pred eCCCcc
Q 018109 354 ITDGFV 359 (360)
Q Consensus 354 i~~g~~ 359 (360)
||.+|.
T Consensus 406 iGSns~ 411 (460)
T COG1207 406 IGSNSQ 411 (460)
T ss_pred EccCCc
Confidence 666553
No 98
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.14 E-value=4.8e-10 Score=99.54 Aligned_cols=86 Identities=20% Similarity=0.387 Sum_probs=62.3
Q ss_pred ceEECCCCEEc-ceEEee----eEEecCeEECCCCEEece----EEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~----~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.||++|.|+ +++|.. .+||++|.|+++|.|+.. ++++++ +.||+++.+.+|
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~------------------~~Ig~~a~i~g~ 89 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN------------------GHIGHGAILHGC 89 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC------------------CEECCCcEEeeE
Confidence 56777777777 666643 578888888888888653 345554 889999999999
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEe
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIR 342 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~ 342 (360)
+||++|.||.++++.+...++.++.++.++.+.
T Consensus 90 vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~ 122 (196)
T PRK13627 90 VIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122 (196)
T ss_pred EECCCCEECcCCccCCCcEECCCCEEcCCCEEe
Confidence 999999999999887765544444444444433
No 99
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.13 E-value=4.1e-10 Score=96.50 Aligned_cols=87 Identities=23% Similarity=0.392 Sum_probs=70.9
Q ss_pred ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec----eEEECCcccchhHHHHhhhhCCCcceEECCCCeEeee
Q 018109 239 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 309 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 309 (360)
++.|++++.|+ +++++ ...||+++.|.+++.|+- .+.+|++ +.||+++.|..|
T Consensus 29 dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~------------------vtIGH~aivHGc 90 (176)
T COG0663 29 DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD------------------VTIGHGAVVHGC 90 (176)
T ss_pred eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCC------------------cEEcCccEEEEe
Confidence 78888888888 66664 577999999999999984 6888886 999999999999
Q ss_pred EecCCCEECCCcEEecCCCcccccccCCceEEeC
Q 018109 310 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRS 343 (360)
Q Consensus 310 ~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~ 343 (360)
.|+++|.||.|+++-|++.+++.+.|+.|+.+.+
T Consensus 91 ~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~ 124 (176)
T COG0663 91 TIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTP 124 (176)
T ss_pred EECCCcEEecCceEeCCcEECCCcEEccCCcccC
Confidence 9999999999999999765555555555544443
No 100
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.13 E-value=4.1e-10 Score=85.53 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=67.1
Q ss_pred CCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCC
Q 018109 226 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303 (360)
Q Consensus 226 ~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 303 (360)
|++++.+ +++.+.++.|+++|.|+ ++.|.+++|++++.|++++.|.++++..+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 4455566 45667789999999999 78899999999999999999999877765 999999
Q ss_pred CeEeeeEecCCCEECCCc
Q 018109 304 TKIKECIIDKNARIGKNV 321 (360)
Q Consensus 304 ~~i~~~~i~~~~~ig~~~ 321 (360)
+.+.+|+|+++++|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999875
No 101
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.13 E-value=4.6e-10 Score=96.13 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=12.2
Q ss_pred eEECCCCeE-----eeeEecCCCEECCCcEE
Q 018109 298 VGIGENTKI-----KECIIDKNARIGKNVII 323 (360)
Q Consensus 298 ~~ig~~~~i-----~~~~i~~~~~ig~~~~~ 323 (360)
+.|+++|.| .+|+|+++++|+.++++
T Consensus 46 ~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i 76 (155)
T cd04745 46 ANVQDNCVIHGFPGQDTVLEENGHIGHGAIL 76 (155)
T ss_pred CEECCCCEEeecCCCCeEEcCCCEECCCcEE
Confidence 445555444 23444444444444443
No 102
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.12 E-value=2e-10 Score=115.99 Aligned_cols=117 Identities=11% Similarity=0.135 Sum_probs=66.4
Q ss_pred CCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEE
Q 018109 224 RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGI 300 (360)
Q Consensus 224 ~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 300 (360)
+.|++++.+ .++.|. ++.||++|.|+ ++.|.+++||++|.|++ +.+.++++..+ +.|
T Consensus 272 v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~-------------------~~I 331 (482)
T PRK14352 272 VTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAG-------------------ATV 331 (482)
T ss_pred EEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCC-------------------CEE
Confidence 344444444 344443 56777777777 66666677777777653 44444444332 666
Q ss_pred CCCCeEe-eeEecCCCEECCCcEE-----ecCCCcc-----cccccCCceEEeCCe------------EEEcCCcEeCCC
Q 018109 301 GENTKIK-ECIIDKNARIGKNVII-----ANSEGIQ-----EADRSAEGFYIRSGV------------TVILKNSVITDG 357 (360)
Q Consensus 301 g~~~~i~-~~~i~~~~~ig~~~~~-----~~~~~~~-----~~~~~~~~~~i~~~~------------~~ig~~~~i~~g 357 (360)
|++|.+. +++||++++||.++.+ .....++ +++.|++++.||.++ ++||+++.||.+
T Consensus 332 g~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~ 411 (482)
T PRK14352 332 GPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSD 411 (482)
T ss_pred CCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCC
Confidence 6666665 6666666666644332 2111111 133566666666654 467788887777
Q ss_pred ccC
Q 018109 358 FVI 360 (360)
Q Consensus 358 ~~i 360 (360)
++|
T Consensus 412 ~~i 414 (482)
T PRK14352 412 TMF 414 (482)
T ss_pred CEE
Confidence 653
No 103
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.12 E-value=3e-10 Score=104.28 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=45.8
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 318 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig 318 (360)
+.||++|.|.. .++||.++.||++|+|..++.+++.. + + -...++.||++|.|+ +|.|.+++.||
T Consensus 130 a~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~IgG~~-e-p--------~~~~~ViIgDnv~IGa~a~I~~GV~IG 195 (269)
T TIGR00965 130 AYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGVL-E-P--------LQANPTIIEDNCFIGARSEIVEGVIVE 195 (269)
T ss_pred cEECCCCEECC----CcEECCCCEECCCCEEcCCcccCCCc-c-c--------CCCCCeEECCCCEECCCCEEcCCCEEC
Confidence 44555555552 34555555555555555554444210 0 0 000126777777775 66666666666
Q ss_pred CCcEEecCCCcccccccCCc
Q 018109 319 KNVIIANSEGIQEADRSAEG 338 (360)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~ 338 (360)
.+++|+.++.+..+.+|.|.
T Consensus 196 ~gavIGaGavI~~~~~I~~~ 215 (269)
T TIGR00965 196 EGSVISMGVFIGQSTKIYDR 215 (269)
T ss_pred CCCEEeCCCEECCCCEEecc
Confidence 66666666666655555554
No 104
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.11 E-value=3.2e-10 Score=113.43 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=66.7
Q ss_pred cCCCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceE
Q 018109 223 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 299 (360)
Q Consensus 223 ~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (360)
.+.|++.+.+ +.+.|. ++.||++|.|+ ++.|.+|+||++|.|.. +.+.++++..+ +.
T Consensus 255 ~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~-~~v~~sii~~~-------------------~~ 314 (448)
T PRK14357 255 DVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIR-SECEKSVIEDD-------------------VS 314 (448)
T ss_pred ceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEee-eEEEEEEEeCC-------------------cE
Confidence 3334444444 233333 46666666666 55555566666666642 34444444433 77
Q ss_pred ECCCCeEe-eeEecCCCEECCCcEEec-----CCCcc-----cccccCCceEEeCCe------------EEEcCCcEeCC
Q 018109 300 IGENTKIK-ECIIDKNARIGKNVIIAN-----SEGIQ-----EADRSAEGFYIRSGV------------TVILKNSVITD 356 (360)
Q Consensus 300 ig~~~~i~-~~~i~~~~~ig~~~~~~~-----~~~~~-----~~~~~~~~~~i~~~~------------~~ig~~~~i~~ 356 (360)
|++++.|. +++||++|+||+++.+.+ ...+. +++.|++++.|+.++ ++||+++.||+
T Consensus 315 ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~ 394 (448)
T PRK14357 315 VGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGS 394 (448)
T ss_pred ECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECC
Confidence 77777775 577888887777765543 11111 133666777776543 46677777777
Q ss_pred CccC
Q 018109 357 GFVI 360 (360)
Q Consensus 357 g~~i 360 (360)
+++|
T Consensus 395 ~~~i 398 (448)
T PRK14357 395 NSSL 398 (448)
T ss_pred CCEE
Confidence 7643
No 105
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.11 E-value=6.7e-10 Score=99.38 Aligned_cols=51 Identities=27% Similarity=0.211 Sum_probs=25.6
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+.|++++.|+.++.+.....++.+..++.++.+..+ +.||+++.|+++++|
T Consensus 115 ~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~~~~v 165 (205)
T cd03352 115 TVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGGQVGI 165 (205)
T ss_pred eEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcCCCEE
Confidence 344444444444444444444444444433333333 356777777777654
No 106
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.10 E-value=3.7e-10 Score=85.18 Aligned_cols=65 Identities=35% Similarity=0.589 Sum_probs=50.3
Q ss_pred ECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCC
Q 018109 242 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 320 (360)
Q Consensus 242 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~ 320 (360)
|+++|.|. ++.+.+++||++|.|++++.|+++++..+ +.|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 45666665 55566678888888888888888776654 88888888888888888888888
Q ss_pred cEEec
Q 018109 321 VIIAN 325 (360)
Q Consensus 321 ~~~~~ 325 (360)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 87765
No 107
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.09 E-value=1.4e-09 Score=96.27 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=26.8
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEec
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~ 325 (360)
+++||++|.|++++.|.+.+.+|++ +.|+.++.+. ++.|+++|.||+++.+..
T Consensus 117 ~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 170 (201)
T TIGR03570 117 DVRIGDNVIINTGAIVEHDCVIGDY------------------VHIAPGVTLSGGVVIGEGVFIGAGATIIQ 170 (201)
T ss_pred CCEECCCcEECCCCEEcCCCEECCC------------------CEECCCCEEeCCcEECCCCEECCCCEEeC
Confidence 3455555555555555544444443 5555555554 455555555555554443
No 108
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.09 E-value=3.7e-10 Score=113.22 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=77.6
Q ss_pred CCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEEC
Q 018109 225 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 301 (360)
Q Consensus 225 ~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 301 (360)
.+++++.| .++.|. ++.||++|.|+ ++.|.+++||++|.|++++.|++++ +|++ +.|+
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~-ig~~------------------~~Ig 327 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDAN-LGAA------------------CTIG 327 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCc-cCCC------------------cEec
Confidence 34556666 455555 68899999998 7888889999999999999988654 4544 6666
Q ss_pred CCCeEe-eeEecCCCEECCCcEEecC-----------CCcccccccCCceEEeCCe------------EEEcCCcEeCCC
Q 018109 302 ENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------TVILKNSVITDG 357 (360)
Q Consensus 302 ~~~~i~-~~~i~~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g 357 (360)
+++.|. ++.++.++.||+++.+.++ ..+ +++.||+++.|++++ ++||+++.||++
T Consensus 328 ~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~ 406 (456)
T PRK09451 328 PFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSD 406 (456)
T ss_pred CceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCC
Confidence 666665 5666666665555544321 111 234666667776665 357888888887
Q ss_pred ccC
Q 018109 358 FVI 360 (360)
Q Consensus 358 ~~i 360 (360)
++|
T Consensus 407 ~~i 409 (456)
T PRK09451 407 TQL 409 (456)
T ss_pred CEE
Confidence 753
No 109
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.08 E-value=8.2e-10 Score=106.69 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=57.6
Q ss_pred ecCCHHH-HHHHHHHhhcCC--CCCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCe
Q 018109 190 DIGTIRS-FFEANLALTAHP--PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRS 262 (360)
Q Consensus 190 digtp~~-~~~a~~~~l~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~ 262 (360)
-+++|.. +.++...+..+. .....+++++.+.+++.+++++.+ .++.|. ++.||++|.|. ++.|. ++.||++|
T Consensus 76 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 155 (343)
T PRK00892 76 VVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADC 155 (343)
T ss_pred EeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCC
Confidence 3445654 333444443222 123556777777777777777777 445554 57777777777 66664 67788888
Q ss_pred EECCCCEEeceEEECCc
Q 018109 263 RINANVHLKDTMMLGAD 279 (360)
Q Consensus 263 ~i~~~~~i~~~~~~~~~ 279 (360)
.|+++++|.+++.+|++
T Consensus 156 ~I~~~~~I~~~~~Ig~~ 172 (343)
T PRK00892 156 RLHANVTIYHAVRIGNR 172 (343)
T ss_pred EeCCCeEEcCCCEECCC
Confidence 88888888877777765
No 110
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.08 E-value=7e-10 Score=98.51 Aligned_cols=97 Identities=16% Similarity=0.291 Sum_probs=66.0
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-----eeEe
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECII 311 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----~~~i 311 (360)
+.|++++.|.+ +++||++|.|+++|.|+.+ ++++.+ +.|+++|.|. +|+|
T Consensus 17 a~I~~~a~I~g----~V~IG~~~~I~~~avIrgd~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~siI 74 (196)
T PRK13627 17 AFVHPSAVLIG----DVIVGAGVYIGPLASLRGDYGRLIVQAG------------------ANLQDGCIMHGYCDTDTIV 74 (196)
T ss_pred eEECCCCEEEC----ceEECCCCEECCCCEEecCCccEEECCC------------------CEECCCCEEeCCCCCCCEE
Confidence 34444544443 5778888888888888763 567765 8888888884 4678
Q ss_pred cCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 312 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 312 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
++++.||.++++.++ .+++++.||.++.|..++ +||+++.|++|++|
T Consensus 75 g~~~~Ig~~a~i~g~-vIG~~v~IG~ga~V~~g~-~IG~~s~Vgags~V 121 (196)
T PRK13627 75 GENGHIGHGAILHGC-VIGRDALVGMNSVIMDGA-VIGEESIVAAMSFV 121 (196)
T ss_pred CCCCEECCCcEEeeE-EECCCCEECcCCccCCCc-EECCCCEEcCCCEE
Confidence 888888888776543 355555555555555554 56888888888764
No 111
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.07 E-value=3.7e-10 Score=102.87 Aligned_cols=103 Identities=21% Similarity=0.247 Sum_probs=64.2
Q ss_pred ccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHH
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVA 288 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 288 (360)
.+++.+.+...+.+++++.+ .++.+. ++.||++|.|+ ++.|. +++||++|.|++++.|.+.. +..
T Consensus 88 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~--~~~--------- 156 (231)
T TIGR03532 88 RIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI--EPP--------- 156 (231)
T ss_pred EECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcccc--ccc---------
Confidence 34555555555556666666 344443 67777787777 66664 66677777777777665421 110
Q ss_pred hhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccc
Q 018109 289 SLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 289 ~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
. ..++.||++|.|+ ++.|.+++.||+++.++..+.+.+
T Consensus 157 --~---~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 157 --S---AKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred --c---CCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 0 0127888888887 788888888888888876654443
No 112
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.07 E-value=7.6e-10 Score=97.97 Aligned_cols=84 Identities=17% Similarity=0.329 Sum_probs=43.9
Q ss_pred eeEEecCeEECCCCEEec---eEEECCcccchhHHHHhhhhCCCcceEECCCCeE-----eeeEecCCCEECCCcEEecC
Q 018109 255 HSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-----KECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-----~~~~i~~~~~ig~~~~~~~~ 326 (360)
++.||++|.|+++|.|.. .+++|++ |.|+++|.| .+|+|+++++|+.++.+.+
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~------------------t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~- 86 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEG------------------ANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG- 86 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCC------------------CEECCCeEEeccCCCCCeECCCCEECCCCEEcC-
Confidence 456666666666666653 3555553 666666666 2466666666666555543
Q ss_pred CCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 327 EGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 327 ~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
+.+++++.|+.++.+..++ +||+++.|++|+
T Consensus 87 siIg~~~~IG~ga~I~~g~-~IG~~s~Vgags 117 (192)
T TIGR02287 87 CIVGRNALVGMNAVVMDGA-VIGENSIVAASA 117 (192)
T ss_pred CEECCCCEECCCcccCCCe-EECCCCEEcCCC
Confidence 2333333344333333332 345555555544
No 113
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.07 E-value=1.1e-09 Score=94.62 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=66.3
Q ss_pred CCccCCCCceeccCCCCCCcee-cCceee----ceEECCCCEEc-ceEEee-----------eEEecCeEECCCCEEece
Q 018109 211 FSFYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEH-----------SVVGIRSRINANVHLKDT 273 (360)
Q Consensus 211 ~~~~~~~~~v~~~~~~~~~~~~-~~~~i~----~~~i~~~~~i~-~~~i~~-----------~~ig~~~~i~~~~~i~~~ 273 (360)
..++++.+.+...+.+++++.+ .++.+. .+.||++|.|+ ++.|.+ +.||+++.|.+++.+.+
T Consensus 5 ~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~- 83 (164)
T cd04646 5 GAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA- 83 (164)
T ss_pred CcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-
Confidence 3456666767677777777777 556663 46899999998 777754 34777777777777766
Q ss_pred EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecC
Q 018109 274 MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~ 326 (360)
+++|++ +.||.+|.|. +++||++|.||+++++...
T Consensus 84 ~~IGd~------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 84 LKIGNN------------------NVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred eEECCC------------------CEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 455554 7777777774 5777777777777766543
No 114
>PLN02296 carbonate dehydratase
Probab=99.07 E-value=8.5e-10 Score=102.42 Aligned_cols=86 Identities=22% Similarity=0.377 Sum_probs=56.8
Q ss_pred eeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-----------eeEecCCCEECCC
Q 018109 255 HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----------ECIIDKNARIGKN 320 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----------~~~i~~~~~ig~~ 320 (360)
++.||++|.|.++|.|... +.+|++ |.|+++|.|. +|+||++|.||.+
T Consensus 70 ~V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~ 131 (269)
T PLN02296 70 DVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHS 131 (269)
T ss_pred ceEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCCCCCcEeCCCCEECCC
Confidence 5677888888888877753 477765 7777777774 4677777777777
Q ss_pred cEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 321 VIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
+++.+ ..+++++.|+.++.|..++ +|++++.|++|++|
T Consensus 132 avI~g-~~Igd~v~IG~ga~I~~gv-~Ig~~a~IgagSvV 169 (269)
T PLN02296 132 AVLHG-CTVEDEAFVGMGATLLDGV-VVEKHAMVAAGALV 169 (269)
T ss_pred ceecC-CEECCCcEECCCcEECCCe-EECCCCEECCCCEE
Confidence 76643 3445555555555555553 44666666666653
No 115
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.05 E-value=6.9e-10 Score=111.27 Aligned_cols=115 Identities=22% Similarity=0.257 Sum_probs=63.3
Q ss_pred CCCCCcee-cCceee-ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEEC
Q 018109 225 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 301 (360)
Q Consensus 225 ~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 301 (360)
.|++.+.+ ..+.+. ++.||++|.|+ ++.|.+++||++|.|++ +.+.++++ |++ +.||
T Consensus 267 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~i-g~~------------------~~Ig 326 (458)
T PRK14354 267 EIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKV-GDN------------------VTVG 326 (458)
T ss_pred EECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEE-CCC------------------cEEC
Confidence 34444444 233332 46666666666 56666666666666663 33444333 332 6677
Q ss_pred CCCeEe-eeEecCCCEECCCcEEecCCC----------cccccccCCceEEeCCe------------EEEcCCcEeCCCc
Q 018109 302 ENTKIK-ECIIDKNARIGKNVIIANSEG----------IQEADRSAEGFYIRSGV------------TVILKNSVITDGF 358 (360)
Q Consensus 302 ~~~~i~-~~~i~~~~~ig~~~~~~~~~~----------~~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~ 358 (360)
++|.|. +++||++|+|+.++.+.+... .-++.+|++++.|++++ ++||+++.||+++
T Consensus 327 ~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s 406 (458)
T PRK14354 327 PFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNS 406 (458)
T ss_pred CceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCC
Confidence 766666 567777777666665543110 01223556666665543 3567777777776
Q ss_pred c
Q 018109 359 V 359 (360)
Q Consensus 359 ~ 359 (360)
+
T Consensus 407 ~ 407 (458)
T PRK14354 407 N 407 (458)
T ss_pred E
Confidence 5
No 116
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.05 E-value=2.3e-09 Score=92.93 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=79.7
Q ss_pred CccCCCCceeccCCCCCCcee-cCceee-----ceEECCCCEEc-ceEEe-----eeEEecCeEECCCCEEeceEEECCc
Q 018109 212 SFYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDTMMLGAD 279 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~-~~~~i~-----~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~~~~~~~~~ 279 (360)
.++++++.+...+.+++.++| .++.|. ++.||++|.|. ++.+. ++.||+++.|++++.|...+.+|++
T Consensus 9 ~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~ 88 (167)
T cd00710 9 AYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN 88 (167)
T ss_pred eEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC
Confidence 456677777777777777777 556664 36899999999 77773 5789999999999999998899986
Q ss_pred ccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEec
Q 018109 280 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~ 325 (360)
+.||.+|.|.++.||++|.||.++.+.+
T Consensus 89 ------------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 89 ------------------CFIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred ------------------CEECCCCEEECCEECCCCEEcCCCEEeC
Confidence 9999999999999999999999998853
No 117
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.04 E-value=1e-09 Score=82.57 Aligned_cols=65 Identities=29% Similarity=0.469 Sum_probs=47.7
Q ss_pred ECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCC
Q 018109 242 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 320 (360)
Q Consensus 242 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~ 320 (360)
||++|.|+ ++.+.++.||+++.|++++.|.++++..+ +.|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 45555555 45555678888888888888887766554 78888888888888888888887
Q ss_pred cEEec
Q 018109 321 VIIAN 325 (360)
Q Consensus 321 ~~~~~ 325 (360)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd05787 63 CTIPP 67 (79)
T ss_pred CEECC
Confidence 77755
No 118
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.04 E-value=2.9e-09 Score=91.75 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=57.7
Q ss_pred eEECCCCEEc-ceEEe----eeEEecCeEECCCCEEece------------EEECCcccchhHHHHhhhhCCCcceEECC
Q 018109 240 SIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT------------MMLGADFYETDAEVASLLAEGRVPVGIGE 302 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 302 (360)
..|++++.|. ++.+. .+.||++|.|++++.|..+ +.++++ +.|++
T Consensus 22 I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~------------------~~Ig~ 83 (161)
T cd03359 22 IVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDY------------------VFIGE 83 (161)
T ss_pred EEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCc------------------cEECC
Confidence 3445555554 44333 3688999999999988864 345554 88888
Q ss_pred CCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 303 NTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 303 ~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
++.+.++.|++++.||+++.+.....++..+.+++++.+.++
T Consensus 84 ~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 84 NCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred CCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCC
Confidence 888888889999999998888775444444444444333333
No 119
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.03 E-value=3.1e-09 Score=93.25 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=26.6
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEec
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~ 325 (360)
++.||++|.|++++.|++.+.+|++ +.|+.++.+. ++.||++|.||.++.+..
T Consensus 114 ~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 114 DARIGDNVIINTGAVIGHDCVIGDF------------------VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CCEECCCeEECCCCEECCCCEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 3455555555555555444444443 5555555553 355555555555554443
No 120
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.00 E-value=1.6e-09 Score=108.71 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=52.7
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.|+++|.|+ ++.|. +++||++|.|++++.|.++ ++|++ +.|++++.|.+++|+++|.
T Consensus 268 ~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~-~Ig~~------------------~~I~~~~~i~~~~i~~~~~ 328 (459)
T PRK14355 268 GVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGC-RIGDD------------------VTVKAGSVLEDSVVGDDVA 328 (459)
T ss_pred CeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCC-EEcCC------------------CEECCCeEEeCCEECCCCE
Confidence 55666777776 55554 6889999999999999875 44554 7888888777777777777
Q ss_pred ECCCcEEecCCCcccc
Q 018109 317 IGKNVIIANSEGIQEA 332 (360)
Q Consensus 317 ig~~~~~~~~~~~~~~ 332 (360)
||+++.+.....++++
T Consensus 329 ig~~~~i~~~~~i~~~ 344 (459)
T PRK14355 329 IGPMAHLRPGTELSAH 344 (459)
T ss_pred ECCCCEECCCCEeCCC
Confidence 7766666544433333
No 121
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.00 E-value=3.7e-09 Score=90.47 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=47.1
Q ss_pred eeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEee-----eEecCCCEECCCcEEecC
Q 018109 255 HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----CIIDKNARIGKNVIIANS 326 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-----~~i~~~~~ig~~~~~~~~ 326 (360)
+++||++|.|++++.|..+ +.+|++ +.|+++|.|.. ++||+++.|+.++.+.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~- 78 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKY------------------SNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG- 78 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCC------------------CEECCCCEEEeCCCCCeEECCCCEECCCcEEEC-
Confidence 4566666666666666654 556654 66666666653 56666666666666643
Q ss_pred CCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 327 EGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 327 ~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
..++++++++.++.+..++ +||+++.|++++
T Consensus 79 ~~Ig~~~~Ig~~~~i~~~~-~Ig~~~~vg~~~ 109 (154)
T cd04650 79 AKVGNYVIVGMGAILLNGA-KIGDHVIIGAGA 109 (154)
T ss_pred cEECCCCEEcCCCEEeCCC-EECCCCEECCCC
Confidence 2344444444444443332 345555555544
No 122
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.00 E-value=2.2e-09 Score=99.35 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=58.3
Q ss_pred CCCCCCceecCceeeceEECCCCEEcceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECC
Q 018109 224 RRNLPPSKIDDSKIVDSIISHGSFITSSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 302 (360)
Q Consensus 224 ~~~~~~~~~~~~~i~~~~i~~~~~i~~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 302 (360)
+++.|++++.. ++.|++++.|.++.+. ++.||+++.|++++.|++++++|++ +.|+.
T Consensus 104 ~rI~p~a~V~~----ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~n------------------v~I~~ 161 (272)
T PRK11830 104 VRVVPGAVVRR----GAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSG 161 (272)
T ss_pred cEEcCCeEECC----CCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCC------------------cEECC
Confidence 34444444432 4455555555543332 4556666666666666665556554 66666
Q ss_pred CCeEe---------eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 303 NTKIK---------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 303 ~~~i~---------~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
++.|. +++|+++|.||.++.+.....++++++|+.++.|.+++
T Consensus 162 gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt 213 (272)
T PRK11830 162 GVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQST 213 (272)
T ss_pred CccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCe
Confidence 66553 37777777777777776666666666666666665554
No 123
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.99 E-value=3.4e-09 Score=89.04 Aligned_cols=88 Identities=16% Similarity=0.287 Sum_probs=45.1
Q ss_pred eEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe---------e
Q 018109 240 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK---------E 308 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~---------~ 308 (360)
+.|++++.|. .+.+. ++.||+++.|++++.|++.+.+|++ +.|+.++.|. +
T Consensus 14 ~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~~~igg~~~~~~~~~ 75 (139)
T cd03350 14 AFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKN------------------VHLSAGAVIGGVLEPLQATP 75 (139)
T ss_pred CEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCC------------------CEECCCCEECCcccccccCC
Confidence 3344444444 33332 3455555555555555555555554 5555555553 2
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
++|+++|.|++++++.....+++...++.++.|.+++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~ 112 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQST 112 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCe
Confidence 5566666666666665555444444555555555443
No 124
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.99 E-value=3.5e-09 Score=79.83 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=63.4
Q ss_pred CCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCC
Q 018109 226 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303 (360)
Q Consensus 226 ~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 303 (360)
+++.+.+ +++.+.++.|+++|.|+ ++.+.+++|++++.|++++.|.++++..+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 4455666 45677788999999998 88899999999999999999999876554 999999
Q ss_pred CeEee-eEecCCCEECC
Q 018109 304 TKIKE-CIIDKNARIGK 319 (360)
Q Consensus 304 ~~i~~-~~i~~~~~ig~ 319 (360)
+.+.+ ++++++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99986 99998888874
No 125
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.99 E-value=1.9e-09 Score=107.85 Aligned_cols=101 Identities=30% Similarity=0.385 Sum_probs=64.7
Q ss_pred ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ 316 (360)
++.||++|.|+ ++.|.++.||++|.|+ .+.+.++++ +++ +.|+++|.|. +++||++|.
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~i-g~~------------------~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQI-GDG------------------VKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccc-cCC------------------cEECCCCEECCCCEEeCceE
Confidence 56666666666 5666666666666664 344444433 332 8888888887 688888888
Q ss_pred ECCCcEEecCCCcc-----------cccccCCceEEeCCe------------EEEcCCcEeCCCccC
Q 018109 317 IGKNVIIANSEGIQ-----------EADRSAEGFYIRSGV------------TVILKNSVITDGFVI 360 (360)
Q Consensus 317 ig~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~~i 360 (360)
||+++.+.+. .+. +++.|++++.||.++ ++||+++.||++++|
T Consensus 340 Ig~~~~i~~~-~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i 405 (450)
T PRK14360 340 IGNFVEIKKS-QLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVL 405 (450)
T ss_pred ECCCEEEecc-ccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEE
Confidence 8888887543 111 123566666666553 356777777777653
No 126
>PLN02472 uncharacterized protein
Probab=98.99 E-value=2.8e-09 Score=97.72 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=68.2
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEec---eEEECCcccchhHHHHhhhhCCCcceEECCCCeEe--------
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------- 307 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-------- 307 (360)
++.|.+++.+.+ ++.||+++.|.+++.|.. .+.+|++ +.|+++|.|.
T Consensus 65 ~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~ 122 (246)
T PLN02472 65 DAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTG 122 (246)
T ss_pred CCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccC
Confidence 344455544443 678999999999998875 3778875 8888888884
Q ss_pred ---eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 308 ---ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 308 ---~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
+++||++|+||.++.+.+ ..++.++.||+++.|..++ +||+++.|++|++
T Consensus 123 i~~~tvIG~~v~IG~~s~L~~-~~Igd~v~IG~~svI~~ga-vIg~~~~Ig~gsv 175 (246)
T PLN02472 123 LPAETLIDRYVTIGAYSLLRS-CTIEPECIIGQHSILMEGS-LVETHSILEAGSV 175 (246)
T ss_pred CCCCcEECCCCEECCCcEECC-eEEcCCCEECCCCEECCCC-EECCCCEECCCCE
Confidence 588888888888888853 4555566666666665554 4567777776664
No 127
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.99 E-value=2.2e-09 Score=87.29 Aligned_cols=82 Identities=22% Similarity=0.179 Sum_probs=50.4
Q ss_pred ceEECCCCEEc-ceEE-eeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.||++|.|+ ++.+ .+++||++|.|++++.+.+..+.+ ..+..++.+.+++||++|.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------------------~~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR--------------------SKIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc--------------------cccccccccCCcEECCCcE
Confidence 56778888887 6666 367777777777777776654433 2344455666677777777
Q ss_pred ECCCcEEecCCCcccccccCCceE
Q 018109 317 IGKNVIIANSEGIQEADRSAEGFY 340 (360)
Q Consensus 317 ig~~~~~~~~~~~~~~~~~~~~~~ 340 (360)
||+++.+.+...++++..++.++.
T Consensus 76 Ig~~~~v~~~~~ig~~~~i~~~~~ 99 (119)
T cd03358 76 IGANATILPGVTIGEYALVGAGAV 99 (119)
T ss_pred ECcCCEEeCCcEECCCCEEccCCE
Confidence 777666655444444433333333
No 128
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.98 E-value=3e-09 Score=88.81 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=4.7
Q ss_pred eEECCCCEEc
Q 018109 240 SIISHGSFIT 249 (360)
Q Consensus 240 ~~i~~~~~i~ 249 (360)
+.||+|+.|.
T Consensus 14 a~IG~GtvI~ 23 (147)
T cd04649 14 AYLAEGTTVM 23 (147)
T ss_pred CEECCCcEEC
Confidence 3444444444
No 129
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.98 E-value=3.8e-09 Score=90.19 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=54.2
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEee-----eEe
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----CII 311 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-----~~i 311 (360)
++|+++|.|.+ ++.||+++.|++++.|..+ +++|++ +.|+++|.|.. ++|
T Consensus 6 ~~i~~~a~i~g----~v~ig~~~~I~~~~~I~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~I 63 (153)
T cd04645 6 AFIAPNATVIG----DVTLGEGSSVWFGAVLRGDVNPIRIGER------------------TNIQDGSVLHVDPGYPTII 63 (153)
T ss_pred eEECCCCEEEE----eEEECCCcEEcCCeEEECCCCceEECCC------------------CEECCCcEEecCCCCCeEE
Confidence 34444444442 4667777777777766643 456654 67777777754 477
Q ss_pred cCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCcc
Q 018109 312 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 359 (360)
Q Consensus 312 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 359 (360)
|+++.|+.++++.+ ..+..++.++.++.+..++ +|++++.|+++++
T Consensus 64 g~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~~-~ig~~~~ig~~~~ 109 (153)
T cd04645 64 GDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDGA-VIGKGSIVAAGSL 109 (153)
T ss_pred cCCcEECCCcEEee-eEECCCCEECCCCEEcCCC-EECCCCEECCCCE
Confidence 77777777776654 2334444444444444343 3455555555543
No 130
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=5.3e-09 Score=97.20 Aligned_cols=159 Identities=21% Similarity=0.316 Sum_probs=107.3
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC--HHHHHHH---HHHcCCcEEEEEeecCCCCCCcccEEEECC-
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQN---HRQSGADITISCLPMDDSRASDFGLMKINN- 99 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d--l~~ll~~---h~~~~a~~tll~~~~~~~~~~~~g~v~~d~- 99 (360)
+.||.|+..+.-.+.+. ..+.-++|+++|+++.-. |.+.++. ..+++..+|+...|... .+.||++...+
T Consensus 87 RnTApAIA~aa~~~~~~--~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~P--eTGYGYIe~G~~ 162 (333)
T COG0836 87 RNTAPAIALAALSATAE--GGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRP--ETGYGYIETGES 162 (333)
T ss_pred CCcHHHHHHHHHHHHHh--CCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCC--ccCcceeecCcc
Confidence 58999999998777641 113459999999976543 6655554 44566667776665543 47899988642
Q ss_pred ----C-CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhh-------
Q 018109 100 ----E-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS------- 167 (360)
Q Consensus 100 ----~-g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~------- 167 (360)
+ -+|.+|+|||+...++ +......++||+|+|+|+.+.+...++...|....-.+
T Consensus 163 ~~~~~~~~V~~FvEKPd~etA~-------------~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~ 229 (333)
T COG0836 163 IAENGVYKVDRFVEKPDLETAK-------------KYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAV 229 (333)
T ss_pred cccCCceEeeeeeeCCCHHHHH-------------HHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhccc
Confidence 2 2799999999987642 22233458999999999999776666665443110000
Q ss_pred ---------c---ccc-----ccc-c-cCceEEEEeCCceeecCCHHHHHHHH
Q 018109 168 ---------E---IIP-----ASA-N-EQFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 168 ---------~---~l~-----~~i-~-~~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
+ .+| .++ + ..+++..+.+-.|.|+|+|.++++..
T Consensus 230 d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 230 DENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred ccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 0 011 122 2 37788899998999999999998774
No 131
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.98 E-value=1.9e-09 Score=107.11 Aligned_cols=40 Identities=23% Similarity=0.147 Sum_probs=19.4
Q ss_pred CCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEEC
Q 018109 226 NLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRIN 265 (360)
Q Consensus 226 ~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~ 265 (360)
|+++|.+.++.+.++.||++|.|. ++.|.++.||+++.|+
T Consensus 285 i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~ 325 (430)
T PRK14359 285 IKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETK 325 (430)
T ss_pred ECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEc
Confidence 344444433444455555555555 4444555555555333
No 132
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.2e-09 Score=108.56 Aligned_cols=99 Identities=26% Similarity=0.404 Sum_probs=77.7
Q ss_pred ECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECC
Q 018109 242 ISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 319 (360)
Q Consensus 242 i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~ 319 (360)
-++.+.+. .+.+. +++||.++.||.++.|.||++ |.+ |.||+||.|.++.||+||+||.
T Consensus 318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVI-G~~------------------c~IgsN~~I~~S~iw~~v~Igd 378 (673)
T KOG1461|consen 318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI-GAN------------------CRIGSNVRIKNSFIWNNVTIGD 378 (673)
T ss_pred cCccceehhhccccceEEecccccccCCCeeeccee-cCC------------------CEecCceEEeeeeeecCcEECC
Confidence 35555555 33332 788999999999999999966 554 9999999999999999999999
Q ss_pred CcEEe-----cCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 320 NVIIA-----NSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 320 ~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
||+|. +.+.++.++.+.+|+.++.++ ++|++-.+..+++|
T Consensus 379 nc~I~~aii~d~v~i~~~~~l~~g~vl~~~V-Vv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 379 NCRIDHAIICDDVKIGEGAILKPGSVLGFGV-VVGRNFVLPKNSKV 423 (673)
T ss_pred CceEeeeEeecCcEeCCCcccCCCcEEeeee-EeCCCccccccccc
Confidence 97766 456778888888888888885 55888888777653
No 133
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.97 E-value=1.6e-09 Score=98.15 Aligned_cols=104 Identities=19% Similarity=0.331 Sum_probs=82.3
Q ss_pred ccCCCCCCceecCceeeceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceE
Q 018109 222 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 299 (360)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (360)
+.++|.|++.+.. .++|++|+.++ ++.|. ++.+++++.|.-++.++.++.+|.+ +.
T Consensus 107 ~g~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn------------------~h 164 (271)
T COG2171 107 EGVRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN------------------SH 164 (271)
T ss_pred CceeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC------------------cc
Confidence 3466777666632 67888888888 47776 7888888888888888888888876 88
Q ss_pred ECCCCeE---------eeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 300 IGENTKI---------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 300 ig~~~~i---------~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
||-++.| .-++|++||.||+++.+..+..++++++|+.|++|++++.+
T Consensus 165 iggGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 165 IGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred cCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 8888887 35888999999999888888888888888888888888753
No 134
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.95 E-value=6e-09 Score=93.23 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=39.9
Q ss_pred ccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEec
Q 018109 213 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD 272 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~ 272 (360)
.+++++.+. .+.+++++.+ .++.+.++.||++|.|+ ++.+.+++||++|.|++++.|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 455555554 3566666666 45666677777777777 66677777777777777777654
No 135
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.95 E-value=5.6e-09 Score=83.29 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=58.0
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 319 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~ 319 (360)
+.|+++|.| .+++||++|.|+ ++.|.+++++.+ +.|+++|.|.+|+|++++.||+
T Consensus 2 ~~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~ 56 (104)
T cd04651 2 PYIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGR 56 (104)
T ss_pred ceecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECC
Confidence 345555554 478999999999 999999888775 9999999999999999999999
Q ss_pred CcEEecCCCcccccccCCceEE
Q 018109 320 NVIIANSEGIQEADRSAEGFYI 341 (360)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i 341 (360)
++.+.+ +.+++.+.+++++.+
T Consensus 57 ~~~i~~-siig~~~~Ig~~~~v 77 (104)
T cd04651 57 NAVIRR-AIIDKNVVIPDGVVI 77 (104)
T ss_pred CCEEEe-EEECCCCEECCCCEE
Confidence 999965 333333333333333
No 136
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.90 E-value=5.5e-09 Score=79.09 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=49.8
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 319 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~ 319 (360)
+.|++++.|++ +++||++|.|++++.|++++++.+ +.|++++.|.+|++++++.|++
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 34455555443 678888999999999988877765 8999999999999999999999
Q ss_pred CcEEec
Q 018109 320 NVIIAN 325 (360)
Q Consensus 320 ~~~~~~ 325 (360)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 888855
No 137
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.89 E-value=1.1e-08 Score=87.67 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=65.7
Q ss_pred CCCccCCCCceeccCCCCCCcee-cCceee----ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccch
Q 018109 210 MFSFYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 283 (360)
Q Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~----~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~ 283 (360)
+..|+++++.+-.+++|+..+.+ .++.++ ...||++|.|. ++++. +.-+.-+.||++++|++.+++-.
T Consensus 16 ~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH-~~~~~p~~IG~~vtIGH~aivHG----- 89 (176)
T COG0663 16 PTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIH-ADPGYPVTIGDDVTIGHGAVVHG----- 89 (176)
T ss_pred CceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEe-cCCCCCeEECCCcEEcCccEEEE-----
Confidence 45788888888888888888777 556664 67899999988 55553 32234444444444444444433
Q ss_pred hHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccccccc
Q 018109 284 DAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRS 335 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~ 335 (360)
|+||++|.|+ +++|-++|+||++|+++..+.+....++
T Consensus 90 --------------c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~ 128 (176)
T COG0663 90 --------------CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEI 128 (176)
T ss_pred --------------eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCC
Confidence 5666666665 5666666666666666655544444333
No 138
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.87 E-value=1.9e-08 Score=89.53 Aligned_cols=133 Identities=21% Similarity=0.141 Sum_probs=71.9
Q ss_pred ceeccCCCCCCceec-Cceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCC
Q 018109 219 PIYTSRRNLPPSKID-DSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 294 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~-~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
++++++.|+|.+.+. +..|. =++||+++.|+ ++.|. +++|--.+.||.++.|.+...+|...++-| +.+.
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlK------ykge 78 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLK------YKGE 78 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccc------cCCC
Confidence 444444555544442 22221 35566666666 44553 566666677777777777777776544443 1111
Q ss_pred CcceEECCCCeEe--------------eeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCc
Q 018109 295 RVPVGIGENTKIK--------------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 358 (360)
Q Consensus 295 ~~~~~ig~~~~i~--------------~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 358 (360)
.-.+.||++|.|+ -+.||.|+.+-+++.++.-+.++.++++..++.+. |.+.||+.+.||..+
T Consensus 79 ~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLA-GHV~igD~aiiGG~s 155 (260)
T COG1043 79 PTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLA-GHVEVGDYAIIGGLS 155 (260)
T ss_pred ceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEe-ccEEECCEEEEcCcc
Confidence 1127788888882 24455555555555554444444444444444443 335667777777665
No 139
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.87 E-value=1.7e-08 Score=75.79 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=58.3
Q ss_pred CCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCC
Q 018109 226 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 303 (360)
Q Consensus 226 ~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 303 (360)
+++++.+ +++.+.++.|+++|.|+ ++.|.+++|++++.|++++.|.++++..+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 4555566 45666788999999998 78888999999999999999987666554 888888
Q ss_pred CeEe-eeEecCCCEECC
Q 018109 304 TKIK-ECIIDKNARIGK 319 (360)
Q Consensus 304 ~~i~-~~~i~~~~~ig~ 319 (360)
+.|. ++.|+++++||+
T Consensus 63 ~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPGSLISFGVVIGD 79 (79)
T ss_pred CEECCCCEEeCCcEeCc
Confidence 8776 577777776663
No 140
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.86 E-value=1.3e-08 Score=89.31 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=4.8
Q ss_pred ceeecCCHH
Q 018109 187 YWEDIGTIR 195 (360)
Q Consensus 187 ~w~digtp~ 195 (360)
++.-++++.
T Consensus 59 ~iiai~~~~ 67 (197)
T cd03360 59 FVVAIGDNK 67 (197)
T ss_pred EEEecCCHH
Confidence 445556663
No 141
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.83 E-value=1.8e-08 Score=89.16 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=40.2
Q ss_pred ceeecCCHHHHHHHHHHhhcCC-CCCCccCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecC
Q 018109 187 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIR 261 (360)
Q Consensus 187 ~w~digtp~~~~~a~~~~l~~~-~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~ 261 (360)
.+..++.+....+....+.... ....++.+.+.+.+.+.+++++.+ .++.|. ++.||++|.|. ++.|. ++.||++
T Consensus 62 ~iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 141 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDY 141 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC
Confidence 4555555555555554444332 222333333444444444444444 233332 34455555554 44442 3444444
Q ss_pred eEECCCCEEeceEEECC
Q 018109 262 SRINANVHLKDTMMLGA 278 (360)
Q Consensus 262 ~~i~~~~~i~~~~~~~~ 278 (360)
+.|++++.+...+.+++
T Consensus 142 ~~i~~~~~i~~~~~ig~ 158 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGE 158 (201)
T ss_pred CEECCCCEEeCCcEECC
Confidence 44444444444444444
No 142
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.82 E-value=2.5e-08 Score=79.05 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=45.1
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ 316 (360)
++.|+++|.|+ ++.|. +++||++|.|+. .|.++++++. +.++++++|.+++||++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 45566666665 44443 466666666654 4556666554 7788888888888888888
Q ss_pred ECCCcEEecC
Q 018109 317 IGKNVIIANS 326 (360)
Q Consensus 317 ig~~~~~~~~ 326 (360)
||+++.+.|-
T Consensus 88 ig~~~~~~~~ 97 (101)
T cd05635 88 LGAGTNNSDL 97 (101)
T ss_pred ECCCceeccc
Confidence 8888877663
No 143
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.79 E-value=3.7e-08 Score=98.60 Aligned_cols=161 Identities=21% Similarity=0.262 Sum_probs=103.5
Q ss_pred ccccHHHHHHHhHhhcCCCCCC-CCeEEEEcCceeee-cC-HHHHHHH---HHHcCCcEEEEEeecCCCCCCcccEEEEC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKV-IEDVLILSGDHLYR-MD-YMDFVQN---HRQSGADITISCLPMDDSRASDFGLMKIN 98 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~-~~~fLVv~gD~i~~-~d-l~~ll~~---h~~~~a~~tll~~~~~~~~~~~~g~v~~d 98 (360)
.++||.|+..|..++.+ +... +.-++|+++|+++. .+ |.+.++. ..+.+..+|+...|... .+.||++..+
T Consensus 88 ~rnTApaialaa~~~~~-~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~P--eTgyGYI~~g 164 (478)
T PRK15460 88 GRNTAPAIALAALAAKR-HSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLP--ETGYGYIRRG 164 (478)
T ss_pred CCChHHHHHHHHHHHHH-hcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCC--CCCCCeEEeC
Confidence 46999999988887753 1111 35788999999754 33 5444443 22345656666655443 4789999875
Q ss_pred CC---------CceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh---
Q 018109 99 NE---------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--- 166 (360)
Q Consensus 99 ~~---------g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--- 166 (360)
+. -+|.+|.|||+...++. .+....++||+|+|+|+.+.|...++...|......
T Consensus 165 ~~~~~~~~~~~~~V~~F~EKPd~~tA~~-------------yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~ 231 (478)
T PRK15460 165 EVSAGEQDTVAFEVAQFVEKPNLETAQA-------------YVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKA 231 (478)
T ss_pred CccccccccCceEeeEEEeCCCHHHHHH-------------HHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHH
Confidence 31 26999999999865321 112235799999999999977766665443211000
Q ss_pred --------------hcccc--------cc-cc-cCceEEEEeCCceeecCCHHHHHHHH
Q 018109 167 --------------SEIIP--------AS-AN-EQFLKAYLFNDYWEDIGTIRSFFEAN 201 (360)
Q Consensus 167 --------------~~~l~--------~~-i~-~~~I~~~~~~g~w~digtp~~~~~a~ 201 (360)
.+.++ .+ ++ -.++...+.+..|.|+|+|.++.+..
T Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 232 MSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 11111 11 12 25688888888899999999998763
No 144
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.78 E-value=2e-08 Score=93.43 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=7.6
Q ss_pred eEecCCCEECCCcEE
Q 018109 309 CIIDKNARIGKNVII 323 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~ 323 (360)
+.||++|.||.++.+
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 445555555555554
No 145
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.78 E-value=5.2e-08 Score=73.69 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=53.3
Q ss_pred ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee-eEecCCCE
Q 018109 239 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNAR 316 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-~~i~~~~~ 316 (360)
++.|+++|.|+ ++.|.++++++++.|++++.|.++++..+ +.+++++.+.+ ++++++++
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCceE
Confidence 67888888887 78888999999999999999999876654 89999999985 88888888
Q ss_pred ECC
Q 018109 317 IGK 319 (360)
Q Consensus 317 ig~ 319 (360)
|++
T Consensus 78 i~~ 80 (80)
T cd05824 78 IKD 80 (80)
T ss_pred ECC
Confidence 764
No 146
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.77 E-value=6.9e-08 Score=80.67 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=30.7
Q ss_pred CceeccCCCCCCcee-cCceee-ceEECCCCEEcceEE-eeeEEecCeEECCCCEEe
Q 018109 218 KPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFI-EHSVVGIRSRINANVHLK 271 (360)
Q Consensus 218 ~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~ 271 (360)
..+..++.|++++.+ .++.+. ++.||++|.|.. .+ .+++||++|.|++++.|.
T Consensus 8 ~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 8 DRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred CEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE
Confidence 344445555555555 333332 566666666652 22 256777777777777776
No 147
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.76 E-value=2.6e-08 Score=80.96 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=45.1
Q ss_pred CCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEec--------
Q 018109 243 SHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIID-------- 312 (360)
Q Consensus 243 ~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~-------- 312 (360)
+++|.|. ++.|. +++||++|.|++++.|.+.+.+|++ +.|++++.+.++.+.
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~~ 63 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYRKW 63 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCcccccccc
Confidence 3444444 33332 5677777777777777665566654 666666666544332
Q ss_pred --CCCEECCCcEEecCCCcccccccCCceEEeCCe
Q 018109 313 --KNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 345 (360)
Q Consensus 313 --~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (360)
.++.||+++.+++.+.+.....+++++.|+.++
T Consensus 64 ~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~ 98 (119)
T cd03358 64 ELKGTTVKRGASIGANATILPGVTIGEYALVGAGA 98 (119)
T ss_pred ccCCcEECCCcEECcCCEEeCCcEECCCCEEccCC
Confidence 334455555555544444444444444444443
No 148
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.75 E-value=1e-07 Score=75.58 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=36.7
Q ss_pred eEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEE
Q 018109 240 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 317 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~i 317 (360)
..|++++.|. ++.+. .++||+++.|++++.|++.+.+|.+ +.||. .|.+|+|+.++.|
T Consensus 12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i 71 (101)
T cd05635 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNK 71 (101)
T ss_pred EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEe
Confidence 3444444444 33332 4666666666666666665555554 56653 4556666666666
Q ss_pred CCCcEEe
Q 018109 318 GKNVIIA 324 (360)
Q Consensus 318 g~~~~~~ 324 (360)
+.++.++
T Consensus 72 ~~~~~lg 78 (101)
T cd05635 72 QHDGFLG 78 (101)
T ss_pred cCcCEEe
Confidence 6665554
No 149
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3e-08 Score=93.74 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=92.6
Q ss_pred CceeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCcee-cCceeeceEECCCCEEc-ceEEeeeEEecCeE
Q 018109 186 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSR 263 (360)
Q Consensus 186 g~w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~ 263 (360)
+.|++++.++-+.... -++.+.-......+.+..++.+++++.+ +++.|..|+||.+|.|+ .+.|.+|.+-+++.
T Consensus 300 ~~y~eiN~~k~~~~l~---~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~ 376 (433)
T KOG1462|consen 300 LSYMEINRDKKLKKLC---SEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVV 376 (433)
T ss_pred HHHHhhhHHHHHHHhc---cccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcE
Confidence 5688888644333322 1222111222334667788888899999 57889999999999999 88899999999999
Q ss_pred ECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC
Q 018109 264 INANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 264 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
||+++.|+++++..+ +.||++|.+.||+||.+-++.+..+.++.
T Consensus 377 vg~G~~IensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 377 VGDGVNIENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred ecCCcceecceeccc-------------------ceecCCCeeeeeEecCCcEEccccccccc
Confidence 999999999987664 99999999999999999999977766653
No 150
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.73 E-value=8.1e-08 Score=82.74 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=50.8
Q ss_pred EECCCCEEcceEEeeeEEecCeEECCCCEEece---EEECCcccchhHHHHhhhhCCCcceEECCCCeEee---------
Q 018109 241 IISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE--------- 308 (360)
Q Consensus 241 ~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~--------- 308 (360)
.|++.+.|.+. .+..||+++.|++++.|... +.+|++ |.|+++|.|..
T Consensus 9 ~i~~~~~i~g~--~~I~ig~~~~I~~~~~I~g~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~~~~ 68 (161)
T cd03359 9 KVSRKSVICGS--QNIVLNGKTIIQSDVIIRGDLATVSIGRY------------------CILSEGCVIRPPFKKFSKGV 68 (161)
T ss_pred eecchheeccC--CCEEECCceEEcCCCEEeCCCcceEECCC------------------cEECCCCEEeCCccccCCCc
Confidence 44444444321 15678888888888877753 577775 77777777753
Q ss_pred ----eEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 309 ----CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 309 ----~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
+.||+++.|++++.+.+ ..+.+++.|+++++|+.+
T Consensus 69 ~~~~v~Ig~~~~Ig~~~~i~~-~~Ig~~v~Ig~~~~Ig~~ 107 (161)
T cd03359 69 AFFPLHIGDYVFIGENCVVNA-AQIGSYVHIGKNCVIGRR 107 (161)
T ss_pred cccCeEECCccEECCCCEEEe-eEEcCCcEECCCCEEcCC
Confidence 46777777777777654 233344444444444444
No 151
>PRK10502 putative acyl transferase; Provisional
Probab=98.73 E-value=5.3e-08 Score=85.64 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=26.2
Q ss_pred eEECCCCEEc-ceEEe---eeEEecCeEECCCCEEec--eEEECCc
Q 018109 240 SIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKD--TMMLGAD 279 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~--~~~~~~~ 279 (360)
+.||+++.|. ++.+. +..||+++.|++++.|.+ .+.+|++
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~ 97 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAH 97 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCC
Confidence 4555566655 44442 577888888888888874 4555654
No 152
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.67 E-value=2e-07 Score=83.18 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=62.0
Q ss_pred eeccCCCCCCceec-CceeeceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCC
Q 018109 220 IYTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 294 (360)
Q Consensus 220 v~~~~~~~~~~~~~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
++.++.|.+|+.+. + .++.||+++.|. ++.+. +..||++|.|++++.|...-+-- +...+. .+...+
T Consensus 58 ig~~~~I~~~~~~~~g---~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~-~~~~r~----~g~~~~ 129 (203)
T PRK09527 58 VGENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPV-HHELRK----NGEMYS 129 (203)
T ss_pred cCCCcEEcCCEEEeeC---CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCC-Chhhcc----cccccc
Confidence 44556677776652 1 266788888888 66663 47899999999999886321000 000000 000000
Q ss_pred CcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccc
Q 018109 295 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 295 ~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
.++.||++|+|+ +++|..+++||++++++.++.+.+
T Consensus 130 -~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 130 -FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred -CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 137777777776 677777777777777777655554
No 153
>PLN02917 CMP-KDO synthetase
Probab=98.66 E-value=6.2e-07 Score=84.73 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=104.4
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEE--EeecCCCCCCcccEEE--EC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS--CLPMDDSRASDFGLMK--IN 98 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll--~~~~~~~~~~~~g~v~--~d 98 (360)
..||+++ ..+...++. ..+.+++++||. +.+.+ +..+++.+++. ++++++ +.+...+++..||.+. .|
T Consensus 119 ~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~ 192 (293)
T PLN02917 119 RNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVD 192 (293)
T ss_pred CCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEEC
Confidence 4588887 577777752 137899999999 55554 79999988654 333332 2233333478899875 67
Q ss_pred CCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc--c-
Q 018109 99 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA--N- 175 (360)
Q Consensus 99 ~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i--~- 175 (360)
++|+++.|..++-..... .++++. .-.+.++|+|+|+.+.|. .+.+..++ +...+++|++++ +
T Consensus 193 ~~g~alyfsr~~Ipe~kd----------~~~~~~--~i~~~n~Giy~f~~~~L~-~l~~l~~~-n~e~e~yLtdl~~le~ 258 (293)
T PLN02917 193 NQGYAIYFSRGLIPYNKS----------GKVNPQ--FPYLLHLGIQSYDAKFLK-IYPELPPT-PLQLEEDLEQLKVLEN 258 (293)
T ss_pred CCCeEEEeecCcCCcCCC----------cccccc--cceEEEEEEEEeCHHHHH-HHHcCCCC-cccchhccHHHHHHhC
Confidence 778877555332211000 001111 135889999999999998 44554322 223455666644 3
Q ss_pred cCceEEEEeCCceeecCCHHHHHHHHHHhhcC
Q 018109 176 EQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 176 ~~~I~~~~~~g~w~digtp~~~~~a~~~~l~~ 207 (360)
+.+|.+++.+....-++||++|.++++.+.++
T Consensus 259 G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 259 GYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 56788888776778999999999999887543
No 154
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.66 E-value=9.5e-08 Score=93.57 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=73.5
Q ss_pred CccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhh
Q 018109 212 SFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 290 (360)
Q Consensus 212 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 290 (360)
.++++.+.+ ..+.|+++|.|.+ .+.+++|+++|.|+ ++.|.+|+|++++.|++++.|.++++..+
T Consensus 283 ~~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------ 348 (380)
T PRK05293 283 QYIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------ 348 (380)
T ss_pred CEECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC------------
Confidence 455666666 3456777777743 46689999999998 88899999999999999999988766554
Q ss_pred hhCCCcceEECCCCeEee-----eEecCCCEECCCcEEe
Q 018109 291 LAEGRVPVGIGENTKIKE-----CIIDKNARIGKNVIIA 324 (360)
Q Consensus 291 ~~~~~~~~~ig~~~~i~~-----~~i~~~~~ig~~~~~~ 324 (360)
+.|++++.+.+ .+||++++|+++++|+
T Consensus 349 -------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 -------AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -------CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999975 8888888888887763
No 155
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.64 E-value=7.1e-08 Score=89.44 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=43.7
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 318 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig 318 (360)
+.||+++.|.+.. ..+||+++.||++|.|...+.+|++... .|....+||++|.|+ +|.|..+++||
T Consensus 148 a~IG~g~~I~h~~--givIG~~a~IGdnv~I~~~VtiGg~~~~----------~~~~~p~IGd~V~IGaga~Ilggv~IG 215 (273)
T PRK11132 148 AKIGRGIMLDHAT--GIVIGETAVIENDVSILQSVTLGGTGKT----------SGDRHPKIREGVMIGAGAKILGNIEVG 215 (273)
T ss_pred ceECCCeEEcCCC--CeEECCCCEECCCCEEcCCcEEecCccc----------CCCcCCEECCCcEEcCCCEEcCCCEEC
Confidence 3444444444211 4578888888888888877777752000 000014566666664 55555666666
Q ss_pred CCcEEecCCCcc
Q 018109 319 KNVIIANSEGIQ 330 (360)
Q Consensus 319 ~~~~~~~~~~~~ 330 (360)
++++|+.++.+.
T Consensus 216 ~~a~IGAgSvV~ 227 (273)
T PRK11132 216 RGAKIGAGSVVL 227 (273)
T ss_pred CCCEECCCCEEC
Confidence 666665554433
No 156
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.64 E-value=1.9e-07 Score=69.51 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=19.5
Q ss_pred EECCCCEEc-ceEEe-eeEEecCeEECCCCEEece
Q 018109 241 IISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDT 273 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~ 273 (360)
.|+++|.|. ++.|. ++.||+++.|++++.|.++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 455555555 44444 3667777777777666654
No 157
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.63 E-value=1.7e-07 Score=86.88 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=8.0
Q ss_pred ccEEEECCCCceEEEE
Q 018109 92 FGLMKINNEGRVLSFS 107 (360)
Q Consensus 92 ~g~v~~d~~g~V~~~~ 107 (360)
+|...+..+|.+++..
T Consensus 6 ~G~at~~~~g~~ld~w 21 (319)
T TIGR03535 6 WGLATVTADGTVLDTW 21 (319)
T ss_pred EEEEEEcCCCCEEEEe
Confidence 3444444556655543
No 158
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.60 E-value=5.2e-07 Score=80.04 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=18.2
Q ss_pred eEECCCCEEc-ceEEe---eeEEecCeEECCCCEEec
Q 018109 240 SIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKD 272 (360)
Q Consensus 240 ~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~ 272 (360)
..||+++.|+ ++.+. .++||++|.|++++.|.+
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~ 102 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITD 102 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEEC
Confidence 4555555555 44442 455666666666665554
No 159
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.59 E-value=1.7e-07 Score=87.23 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=4.6
Q ss_pred EcCCcEeCCCc
Q 018109 348 ILKNSVITDGF 358 (360)
Q Consensus 348 ig~~~~i~~g~ 358 (360)
||++|.||+|+
T Consensus 269 IGd~~iIGAGa 279 (341)
T TIGR03536 269 LGDRCTVEAGL 279 (341)
T ss_pred ECCCCEECCCC
Confidence 34444444443
No 160
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.59 E-value=1.1e-07 Score=77.83 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=77.1
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEec------------eEEECCcccchhHHHHhhhhCCCcceEECCCCeE
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKD------------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI 306 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i 306 (360)
.+++.++|.|.+ .+.++.+|..|.++.++.|++ .+++|+. +.|++.|.+
T Consensus 39 KtIv~~g~iIRG-DLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdh------------------VFieE~cVV 99 (184)
T KOG3121|consen 39 KTIVEEGVIIRG-DLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDH------------------VFIEEECVV 99 (184)
T ss_pred cEEEeeCcEEec-ccccceEcceEEeccccccCCchHHhcCCceeeeeeecce------------------EEEecceEe
Confidence 678888888884 566788999999999999986 6788887 999999999
Q ss_pred eeeEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCC
Q 018109 307 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITD 356 (360)
Q Consensus 307 ~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~ 356 (360)
+-+.||..+++|++++|++...+.+.++|.|++.+.+.++ +.+.+++++
T Consensus 100 nAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~-vppy~~~~g 148 (184)
T KOG3121|consen 100 NAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETL-VPPYSTIGG 148 (184)
T ss_pred ehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccc-cCCceEEcC
Confidence 8888888888888888888877777888888877665543 355555554
No 161
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.59 E-value=3.1e-07 Score=68.28 Aligned_cols=51 Identities=27% Similarity=0.526 Sum_probs=32.1
Q ss_pred eEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEee---------eEecCCCEECCCcEEe
Q 018109 256 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVIIA 324 (360)
Q Consensus 256 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~---------~~i~~~~~ig~~~~~~ 324 (360)
++||+++.|++++.|.+.+.+|++ +.|++++.|.+ +.||++|.|+.++.+.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 356777777777777776667765 77777777764 3444444444444443
No 162
>PLN02694 serine O-acetyltransferase
Probab=98.58 E-value=2.6e-07 Score=85.90 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=40.9
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 318 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig 318 (360)
+.||+++.|.+.. .++||+++.|+++|.|..++.+|+...+ .|...++||++|.|+ ++.|..+++||
T Consensus 167 A~IG~gv~Idh~t--GVVIGe~a~IGdnv~I~~~VtLGg~g~~----------~~~r~piIGd~V~IGagA~Ilggi~IG 234 (294)
T PLN02694 167 AKIGKGILFDHAT--GVVIGETAVIGNNVSILHHVTLGGTGKA----------CGDRHPKIGDGVLIGAGATILGNVKIG 234 (294)
T ss_pred ceecCCEEEeCCC--CeEECCCcEECCCCEEeecceeCCcccc----------cCCCccEECCCeEECCeeEECCCCEEC
Confidence 3444454444211 4788888888888888888888762100 000114555555554 44444444444
Q ss_pred CCcEEecCC
Q 018109 319 KNVIIANSE 327 (360)
Q Consensus 319 ~~~~~~~~~ 327 (360)
++++|+..+
T Consensus 235 d~a~IGAgS 243 (294)
T PLN02694 235 EGAKIGAGS 243 (294)
T ss_pred CCCEECCCC
Confidence 444444443
No 163
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.57 E-value=4.1e-07 Score=80.68 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=39.7
Q ss_pred CCCCCceec-Cceee---ceEECCCCEEcceEEeeeEEecCeEECCCCEEe--ceEEECCcccchhHHHHhhhhCCCcce
Q 018109 225 RNLPPSKID-DSKIV---DSIISHGSFITSSFIEHSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPV 298 (360)
Q Consensus 225 ~~~~~~~~~-~~~i~---~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (360)
.+.+|..+. +..+. ++.++.+|++.-.......||+++.|++++.|. ..+.+|++ |
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~------------------v 92 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD------------------T 92 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC------------------C
Confidence 455666552 22221 445555555431011257799999999999887 46778876 7
Q ss_pred EECCCCeEe
Q 018109 299 GIGENTKIK 307 (360)
Q Consensus 299 ~ig~~~~i~ 307 (360)
.|++++.|.
T Consensus 93 ~Ig~~v~I~ 101 (192)
T PRK09677 93 LIASKVFIT 101 (192)
T ss_pred EECCCeEEE
Confidence 777777764
No 164
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.57 E-value=6.4e-07 Score=77.76 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=54.8
Q ss_pred ceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
+..||+++.|+ ++.+. +.+||+++.|++++.|..+..--+ ... ...+...+ .++.||++|+|+ +++|..
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~---~~~--~~~~~~~~-~~v~IG~~~~Ig~~a~I~~ 135 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLD---PEE--RNRGLEYA-KPITIGDNVWIGGGVIILP 135 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCC---hhH--ccccceec-CCcEeCCCEEECCCCEEeC
Confidence 45677777777 55553 568999999999998864311000 000 00000000 126677777765 566666
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 353 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~ 353 (360)
+++||++++++.++.+.+. +.++.++.|.+++
T Consensus 136 gv~Ig~~~~VgagavV~~~--------vp~~~vv~G~PAk 167 (169)
T cd03357 136 GVTIGDNSVIGAGSVVTKD--------IPANVVAAGNPAR 167 (169)
T ss_pred CCEECCCCEECCCCEEccc--------cCCCcEEEccccE
Confidence 6666666666665544432 3344455555554
No 165
>PRK10502 putative acyl transferase; Provisional
Probab=98.51 E-value=7.1e-07 Score=78.46 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=49.2
Q ss_pred ceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
+..||++|.|+ ++.+. .++||++|.|++++.|....+.-. ... ..+. ..++.||++|.|. +|.|..
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~---~~~----~~~~--~~~i~Igd~~~Ig~~a~I~~ 141 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYS---DPH----FDLN--TAPIVIGEGCWLAADVFVAP 141 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCc---CCC----cccc--cCCEEEcCCcEEcCCCEEcC
Confidence 35667777776 55553 577888888888888753311100 000 0000 0126777777776 677777
Q ss_pred CCEECCCcEEecCCCcc
Q 018109 314 NARIGKNVIIANSEGIQ 330 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~ 330 (360)
+++||++++++..+.+.
T Consensus 142 Gv~Ig~~~vIga~svV~ 158 (182)
T PRK10502 142 GVTIGSGAVVGARSSVF 158 (182)
T ss_pred CCEECCCCEECCCCEEe
Confidence 77777777777654443
No 166
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.51 E-value=4.6e-07 Score=90.26 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=73.5
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecC------
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK------ 313 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~------ 313 (360)
+.+.+.+.+.++.+.++.||++|.| +++.|+++++..+ |.||++|.|.+|+|+.
T Consensus 293 ~~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~ 352 (429)
T PRK02862 293 ARYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYES 352 (429)
T ss_pred CCCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCccccc
Confidence 3445555666667778999999999 8999998855544 9999999999999975
Q ss_pred -------------CCEECCCcEEecCCCcccccccCCceEEeCCe-----------EEEcCC-cEeCCCccC
Q 018109 314 -------------NARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----------TVILKN-SVITDGFVI 360 (360)
Q Consensus 314 -------------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~ig~~-~~i~~g~~i 360 (360)
++.||++|.|.+ +.+.+.+.|++++.+..+. .+|+.+ +.|+.++++
T Consensus 353 ~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 353 SEEREELRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred ccccccccccCCcccEECCCCEEEE-EEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 799999999976 4556666777777774222 234555 556666543
No 167
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.51 E-value=9.3e-07 Score=77.72 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=60.4
Q ss_pred ceEECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
+..||+++.|. ++++. ...||++|.|++++.|....+-.+. .++ ..+..- +.++.||++|+|+ +|+|..
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~-~~~----~~~~~~-~~~v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDP-VAR----NSGAEL-GKPVTIGNNVWIGGRAVINP 146 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCCh-HHc----ccccee-cCCeEECCCcEECCCCEECC
Confidence 56777777777 55553 3479999999999988643221110 000 000000 0137788888885 777777
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
+++||++++|+.++.+.+. +.+++++.|..+++
T Consensus 147 gv~IG~~~vIgagsvV~~d--------i~~~~i~~G~PAr~ 179 (183)
T PRK10092 147 GVTIGDNVVVASGAVVTKD--------VPDNVVVGGNPARI 179 (183)
T ss_pred CCEECCCCEECCCCEEccc--------cCCCcEEEecCcEE
Confidence 7777777777776554433 33455565666654
No 168
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.48 E-value=1.2e-06 Score=81.17 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=5.0
Q ss_pred ceEECCCCEEc
Q 018109 239 DSIISHGSFIT 249 (360)
Q Consensus 239 ~~~i~~~~~i~ 249 (360)
.++||+|+.|.
T Consensus 165 GAyLGeGtvVm 175 (319)
T TIGR03535 165 GAHLAEGTTVM 175 (319)
T ss_pred ccEECCCCEEc
Confidence 34444444444
No 169
>PLN02357 serine acetyltransferase
Probab=98.47 E-value=7.6e-07 Score=85.08 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=17.8
Q ss_pred eeEEecCeEECCCCEEeceEEECC
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGA 278 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~ 278 (360)
.++||+++.||+++.|..++.+|+
T Consensus 246 giVIGe~avIGdnV~I~~gVtIGg 269 (360)
T PLN02357 246 GVVIGETAVVGNNVSILHNVTLGG 269 (360)
T ss_pred ceEECCCCEECCCCEEeCCceecC
Confidence 467777777777777777777765
No 170
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.47 E-value=7.9e-07 Score=77.21 Aligned_cols=69 Identities=28% Similarity=0.316 Sum_probs=39.4
Q ss_pred eeEEecCeEECCCCEEe--ceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-------------------eeEecC
Q 018109 255 HSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 313 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-------------------~~~i~~ 313 (360)
+..||+++.|++++.|. ..+.+|++ +.|+++|.|. .+.||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~------------------v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 123 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDN------------------VLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGD 123 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCC------------------CEECCCCEEEeCCCCCChhHccccceecCCcEeCC
Confidence 45677777777777665 35666665 6777777762 234444
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
+|.||.++++. .++.|+++++|+.++++
T Consensus 124 ~~~Ig~~a~I~------~gv~Ig~~~~VgagavV 151 (169)
T cd03357 124 NVWIGGGVIIL------PGVTIGDNSVIGAGSVV 151 (169)
T ss_pred CEEECCCCEEe------CCCEECCCCEECCCCEE
Confidence 44444444443 34555555666555544
No 171
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.46 E-value=6.4e-07 Score=89.44 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=70.5
Q ss_pred CCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecC----------
Q 018109 244 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK---------- 313 (360)
Q Consensus 244 ~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~---------- 313 (360)
+++.+.++.+.+|+|+++|.|+ ++.|+++++ +.+ |.|+++|.|.+|++..
T Consensus 304 ~~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI-~~~------------------~~Ig~~~~I~~sii~g~~~~~~~~~~ 363 (436)
T PLN02241 304 PPSKIEDCRITDSIISHGCFLR-ECKIEHSVV-GLR------------------SRIGEGVEIEDTVMMGADYYETEEEI 363 (436)
T ss_pred CCcEecCCeEEEeEEcCCcEEc-CeEEEeeEE-cCC------------------CEECCCCEEEEeEEECCCcccccccc
Confidence 4555566667679999999999 999998854 544 9999999999888854
Q ss_pred ------C---CEECCCcEEecCCCcccccccCCceEEe-----CCeEEEcCCcEeCCCc
Q 018109 314 ------N---ARIGKNVIIANSEGIQEADRSAEGFYIR-----SGVTVILKNSVITDGF 358 (360)
Q Consensus 314 ------~---~~ig~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~ig~~~~i~~g~ 358 (360)
+ ++||++|++.+ +.+..++.|++++.|. ++++++|++++|+.|+
T Consensus 364 ~~~~~~~~~~~~Ig~~~~i~~-~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
T PLN02241 364 ASLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGI 421 (436)
T ss_pred ccccccCCcceEECCCCEEcc-eEecCCCEECCCcEEecccccCCccccccccEEeCCE
Confidence 3 38999999975 4466667777777775 3334567777777774
No 172
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.45 E-value=1.9e-06 Score=68.94 Aligned_cols=96 Identities=17% Similarity=0.252 Sum_probs=50.8
Q ss_pred EECCCCEEc-ceEEe---eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCC
Q 018109 241 IISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNA 315 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~ 315 (360)
.||++|.|+ ++.|. ...||++|.|++++.|....+ ++...+. .+.. +++.||++|+|. ++.|..++
T Consensus 5 ~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h---~~~~~~~----~~~~--~~v~Ig~~~~ig~~~~i~~g~ 75 (107)
T cd05825 5 TIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSH---DYRSPAF----PLIT--APIVIGDGAWVAAEAFVGPGV 75 (107)
T ss_pred EECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCC---CCCcCcc----ceec--CCEEECCCCEECCCCEECCCC
Confidence 455555555 44442 467888888888887753210 0000000 0000 126777777776 67777777
Q ss_pred EECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcE
Q 018109 316 RIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 353 (360)
Q Consensus 316 ~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~ 353 (360)
+||+++.++..+.+.+. +.++.+..|..++
T Consensus 76 ~Ig~~~~i~~gs~v~~~--------~~~~~~~~G~Pa~ 105 (107)
T cd05825 76 TIGEGAVVGARSVVVRD--------LPAWTVYAGNPAV 105 (107)
T ss_pred EECCCCEECCCCEEeCc--------CCCCCEEECCccE
Confidence 77777777666554432 2234445555554
No 173
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.45 E-value=1e-06 Score=78.66 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=30.1
Q ss_pred ECCCCEEc-ceEE---eeeEEecCeEECCCCEEec--eEEECCcccchhHHHHhhhhCCCcceEECCCCeEe
Q 018109 242 ISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 307 (360)
Q Consensus 242 i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~ 307 (360)
+|+++.|. +..+ .+..||+++.|+.++.|.+ .+.+|++ |.|+++|.|.
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~------------------v~Ig~~v~I~ 111 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDN------------------VLIAPNVTLS 111 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCC------------------CEECCCCEEE
Confidence 45555555 3333 2577777777777777743 4667765 7777777763
No 174
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.44 E-value=1.9e-06 Score=85.24 Aligned_cols=96 Identities=21% Similarity=0.353 Sum_probs=63.7
Q ss_pred CeEEEEcCce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC---------ceEEEEecCCcccccc
Q 018109 48 EDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG---------RVLSFSEKPKGKDLKA 117 (360)
Q Consensus 48 ~~fLVv~gD~-i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g---------~V~~~~ekp~~~~~~~ 117 (360)
.-++|..+|. +...+ ...+. +.+ +.++++..+.+-.-.+..|++..|+++ .+.+|..||+...-
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~-~~~--~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem-- 127 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLID-WDE--PGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEM-- 127 (414)
T ss_pred cceEEEecccccccCc-cccCC-CCC--CCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHH--
Confidence 4689999994 44333 22332 222 567777777765446789999999888 79999999987541
Q ss_pred ccccccccccccccccccCceeeeeEEEEeHHHHHHHHHh
Q 018109 118 MAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 157 (360)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~ 157 (360)
.-. .....+.....++|++.|+.++.+.++..
T Consensus 128 -~~~-------~av~~~~~~~ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 128 -RAS-------GAVLPDGNVLLDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred -HhC-------CcccCCCcccccccceeccHHHHHHHHHh
Confidence 100 11112235677999999999988877644
No 175
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.43 E-value=6.2e-07 Score=83.19 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=13.3
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEe
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIA 324 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~ 324 (360)
|.||.||.|. ++.||++|.||+++++.
T Consensus 200 V~IGaga~Ilggv~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 200 VMIGAGAKILGNIEVGRGAKIGAGSVVL 227 (273)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEEC
Confidence 4555555543 45555555555555444
No 176
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.42 E-value=1.1e-06 Score=70.11 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=19.8
Q ss_pred EECCCCEEc-ceEEe---eeEEecCeEECCCCEEece
Q 018109 241 IISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDT 273 (360)
Q Consensus 241 ~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~ 273 (360)
.||++|.|+ ++.|. ++.||++|.|++++.|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 344444444 33332 4777777777777777755
No 177
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.42 E-value=9.7e-07 Score=85.80 Aligned_cols=63 Identities=19% Similarity=0.354 Sum_probs=50.7
Q ss_pred CCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCc
Q 018109 243 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 321 (360)
Q Consensus 243 ~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~ 321 (360)
.+.+.|+ .+.+.+++||++|.|+++ .+.++++..+ |.|+++|.|.+|+|++++.||.++
T Consensus 281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~ 340 (361)
T TIGR02091 281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGA 340 (361)
T ss_pred CCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCC
Confidence 3444555 345567899999999987 7887766544 999999999999999999999999
Q ss_pred EEec
Q 018109 322 IIAN 325 (360)
Q Consensus 322 ~~~~ 325 (360)
.+.+
T Consensus 341 ~l~~ 344 (361)
T TIGR02091 341 VIRN 344 (361)
T ss_pred EEee
Confidence 9864
No 178
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.41 E-value=1.1e-06 Score=85.14 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=51.6
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEEC
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 318 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig 318 (360)
++.|+++|.|. +++|+..+.|+++|.|+++++.++ |.||++|.|++|+| .++.|+
T Consensus 254 ~~~i~~~~~i~-----~~~i~~~~~Ig~~~~I~~~~i~~~-------------------~~Ig~~~~i~~~~i-~~s~i~ 308 (353)
T TIGR01208 254 RVVVGEGAKIV-----NSVIRGPAVIGEDCIIENSYIGPY-------------------TSIGEGVVIRDAEV-EHSIVL 308 (353)
T ss_pred CEEECCCCEEe-----CCEEECCcEECCCCEEcCcEECCC-------------------CEECCCCEEeeeEE-EeeEEc
Confidence 45555555553 566767778888888877765554 77777777765555 255555
Q ss_pred CCcEEecCC-CcccccccCCceEEeCCe-------EEEcCCcEeC
Q 018109 319 KNVIIANSE-GIQEADRSAEGFYIRSGV-------TVILKNSVIT 355 (360)
Q Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~-------~~ig~~~~i~ 355 (360)
+++++.... .+ .++++++++.|++++ .++|+.+.|+
T Consensus 309 ~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 309 DESVIEGVQARI-VDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred CCCEEcCCccee-ecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 555554332 11 233445555554443 2455555543
No 179
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.41 E-value=8.7e-07 Score=77.05 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=11.8
Q ss_pred ccCCceEEeCCeE-----EEcCCcEeCCCcc
Q 018109 334 RSAEGFYIRSGVT-----VILKNSVITDGFV 359 (360)
Q Consensus 334 ~~~~~~~i~~~~~-----~ig~~~~i~~g~~ 359 (360)
.|+++++|++|+. .||+++.||||+|
T Consensus 121 tIg~~V~IGagAkILG~I~IGd~akIGA~sV 151 (194)
T COG1045 121 TIGNGVYIGAGAKILGNIEIGDNAKIGAGSV 151 (194)
T ss_pred ccCCCeEECCCCEEEcceEECCCCEECCCce
Confidence 4444444444442 3344555555554
No 180
>PLN02694 serine O-acetyltransferase
Probab=98.40 E-value=7.1e-07 Score=83.02 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=33.9
Q ss_pred eeEEecCeEECCCCEEec--------eEEECCcccchhHHHHhhhhCCCcceEECCCCeE-eeeEecCCCEECCCcEEec
Q 018109 255 HSVVGIRSRINANVHLKD--------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-KECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~~i~~~~~ig~~~~~~~ 325 (360)
+++||++|.|..++.++. ..++|++ |.||.++.| .++.||++|.||+++++..
T Consensus 186 ~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~------------------V~IGagA~Ilggi~IGd~a~IGAgSVV~k 247 (294)
T PLN02694 186 TAVIGNNVSILHHVTLGGTGKACGDRHPKIGDG------------------VLIGAGATILGNVKIGEGAKIGAGSVVLI 247 (294)
T ss_pred CcEECCCCEEeecceeCCcccccCCCccEECCC------------------eEECCeeEECCCCEECCCCEECCCCEECC
Confidence 466777777766666653 3455554 667766666 3666777777777766664
No 181
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.39 E-value=1.1e-06 Score=85.67 Aligned_cols=61 Identities=25% Similarity=0.421 Sum_probs=50.3
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEEC
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 318 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig 318 (360)
++.|+++|. |.+|+||++|.|+ +.|.+++++.+ |.|+++|.|.+|+|+++|.|+
T Consensus 278 p~~i~~~~~-----i~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~ 331 (369)
T TIGR02092 278 PTYYAENSK-----VENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIG 331 (369)
T ss_pred CcEEcCCCE-----EEEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEEC
Confidence 345555544 4589999999997 46888877665 999999999999999999999
Q ss_pred CCcEEec
Q 018109 319 KNVIIAN 325 (360)
Q Consensus 319 ~~~~~~~ 325 (360)
+++.+.+
T Consensus 332 ~~~~i~~ 338 (369)
T TIGR02092 332 EGAHLEN 338 (369)
T ss_pred CCCEEEE
Confidence 9999977
No 182
>PRK10191 putative acyl transferase; Provisional
Probab=98.39 E-value=2.7e-06 Score=71.91 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=11.4
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEe
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIA 324 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~ 324 (360)
+.||.++.+. ++.||+++.||+++.+.
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~ 126 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVL 126 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 4444444443 34444444444444443
No 183
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.38 E-value=1.7e-06 Score=74.67 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=17.4
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 278 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~ 278 (360)
+.||+++.|.+. ..++|++++.|+++|.|.+++.++.
T Consensus 68 ~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 68 ARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred CEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECC
Confidence 344445544421 1245555555555555555555553
No 184
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=2e-06 Score=82.60 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=64.9
Q ss_pred ceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEE
Q 018109 239 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 317 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~i 317 (360)
.....+.+.+. .+.+.+|.|+.+|.|.. .|.+|++.-+ ++|+++|.|.+|+|..+|.|
T Consensus 279 ~~~~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~I 337 (393)
T COG0448 279 KNKNLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEI 337 (393)
T ss_pred cCCCCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEE
Confidence 34455666666 55677899999999998 8999988765 99999999999999999999
Q ss_pred CCCcEEecCCCcccccccCCceEEeCC
Q 018109 318 GKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
|.+|.+.+ +.+.++++|++|+.|+..
T Consensus 338 G~~~~l~~-aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 338 GEGAVLRR-AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred CCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence 99999987 344445455555444433
No 185
>PLN02739 serine acetyltransferase
Probab=98.35 E-value=1.8e-06 Score=81.98 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=19.3
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 278 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~ 278 (360)
+.||+++.|.+.. .++||+++.||.++.|...+.+|+
T Consensus 212 A~IG~Gv~IdHg~--GVVIG~~avIGdnv~I~~gVTIGg 248 (355)
T PLN02739 212 ARIGKGILLDHGT--GVVIGETAVIGDRVSILHGVTLGG 248 (355)
T ss_pred ccccCceEEecCC--ceEECCCCEECCCCEEcCCceeCC
Confidence 3445555554211 455666666666666655555554
No 186
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.34 E-value=1.1e-06 Score=87.40 Aligned_cols=67 Identities=12% Similarity=0.263 Sum_probs=54.0
Q ss_pred eEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcc
Q 018109 251 SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQ 330 (360)
Q Consensus 251 ~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~ 330 (360)
+.+.+|+||++|.| +++.|++|++..+ |.|+++|.|.+|+|+++|.||+++.+.+
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~----- 377 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR----- 377 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee-----
Confidence 34568999999999 7999998776554 9999999999999999999999999965
Q ss_pred cccccCCceEEeCC
Q 018109 331 EADRSAEGFYIRSG 344 (360)
Q Consensus 331 ~~~~~~~~~~i~~~ 344 (360)
++|++++.|+.+
T Consensus 378 --~ii~~~~~i~~~ 389 (425)
T PRK00725 378 --CVIDRGCVIPEG 389 (425)
T ss_pred --EEECCCCEECCC
Confidence 344444444444
No 187
>PLN02739 serine acetyltransferase
Probab=98.33 E-value=1e-06 Score=83.67 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=15.7
Q ss_pred eEecCCCEECCCcEEecCCCcccccccCCceEEeCCeEE
Q 018109 309 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 347 (360)
Q Consensus 309 ~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 347 (360)
++||++|.||+|++|.. ++.||+++.|+.|+++
T Consensus 258 p~IGd~V~IGagA~IlG------~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 258 PKIGDGALLGACVTILG------NISIGAGAMVAAGSLV 290 (355)
T ss_pred cEECCCCEEcCCCEEeC------CeEECCCCEECCCCEE
Confidence 44444444444444433 3445555555555443
No 188
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.32 E-value=1.8e-06 Score=74.48 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=12.3
Q ss_pred eeEEecCeEECCCCEEece
Q 018109 255 HSVVGIRSRINANVHLKDT 273 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~ 273 (360)
+++||++|.|++++.|+.+
T Consensus 87 ~~~IG~~~~I~~~v~ig~~ 105 (162)
T TIGR01172 87 TAVIGDDVTIYHGVTLGGT 105 (162)
T ss_pred CCEECCCCEEcCCCEECCC
Confidence 4666666666666666643
No 189
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=9.6e-07 Score=79.08 Aligned_cols=165 Identities=10% Similarity=0.127 Sum_probs=100.1
Q ss_pred CCCcEEEeeCc-ccCCCCCCccc-----------------cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCH-H
Q 018109 4 LTGNSQVLAAT-QTPGEAGKRWF-----------------QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-M 64 (360)
Q Consensus 4 ~~g~~~i~~~~-~~~~~~~~~~~-----------------lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl-~ 64 (360)
+.|+.+++.+. |+.+|....++ .+|+.+|..|.+.+. +.|++++||+++...+ +
T Consensus 43 ~~gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e 115 (239)
T COG1213 43 KAGITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILE 115 (239)
T ss_pred HcCCceEEEEeccchHHHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHH
Confidence 57888888888 88887554331 377999999999886 6799999999998775 4
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEE
Q 018109 65 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 144 (360)
Q Consensus 65 ~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIy 144 (360)
.+++ .+.. ++.+...+......-.....+++|++..+..+-.. ..-.+.|++
T Consensus 116 ~l~~----a~~~-~li~d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~ 167 (239)
T COG1213 116 RLLE----APGE-GLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIF 167 (239)
T ss_pred HHHh----CcCC-cEEEeccccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeE
Confidence 4443 3222 22222222211111122234478999888655432 235689999
Q ss_pred EEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe-----CCceeecCCHHHHHHHHHHhhcC
Q 018109 145 LFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF-----NDYWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 145 ifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~-----~g~w~digtp~~~~~a~~~~l~~ 207 (360)
.|++++|....+-.... ....+.++.....+.+-.. ...|+++.||+++.++.+.+...
T Consensus 168 ~l~~~i~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 168 ILSDSIFEDTYELLVER----SEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred EechHHHHHHHHHHhhh----hhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 99999887543221111 1111222222111111111 46899999999999999887654
No 190
>PRK10191 putative acyl transferase; Provisional
Probab=98.32 E-value=1.8e-06 Score=72.98 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=45.1
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEE
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARI 317 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~i 317 (360)
++.||+++.|.+. ..++|++++.||+++.|++.+.+|+... ..- +.+.||++|.|. ++.+..++.|
T Consensus 47 ~a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~~---------~~~--~~~~IGd~~~Ig~~~~I~~~v~I 113 (146)
T PRK10191 47 AATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRGA---------DNM--ACPHIGNGVELGANVIILGDITI 113 (146)
T ss_pred CCEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCCc---------CCC--CCCEECCCcEEcCCCEEeCCCEE
Confidence 3556666666632 1355566666666666666556654200 000 115677777776 6777777777
Q ss_pred CCCcEEecCCCccc
Q 018109 318 GKNVIIANSEGIQE 331 (360)
Q Consensus 318 g~~~~~~~~~~~~~ 331 (360)
|+++.++.++.+.+
T Consensus 114 G~~~~Igags~V~~ 127 (146)
T PRK10191 114 GNNVTVGAGSVVLD 127 (146)
T ss_pred CCCCEECCCCEECC
Confidence 77777766554443
No 191
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2.4e-06 Score=83.04 Aligned_cols=54 Identities=30% Similarity=0.457 Sum_probs=50.7
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
..+||++|.|++++.|++.+++|++ |.|++++.|.+|+|.++|+|+.++.+.++
T Consensus 261 p~~ig~~~~i~~~~~i~~~~~ig~~------------------~~I~~~~~i~~Sii~~~~~i~~~~~i~~s 314 (358)
T COG1208 261 PVVIGPGAKIGPGALIGPYTVIGEG------------------VTIGNGVEIKNSIIMDNVVIGHGSYIGDS 314 (358)
T ss_pred CEEECCCCEECCCCEECCCcEECCC------------------CEECCCcEEEeeEEEcCCEECCCCEEeee
Confidence 7899999999999999999999986 99999999999999999999999999874
No 192
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.28 E-value=2.2e-06 Score=78.00 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=63.9
Q ss_pred cCCCCceeccCCCCCCcee-cCceee-ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEeceEEECCcccchhHHHHh
Q 018109 214 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVAS 289 (360)
Q Consensus 214 ~~~~~~v~~~~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~ 289 (360)
+.+.+.+...++|.+++++ .++-+- ++.++++|-|. .+++. ..+||++|.|+.++.|.....=+
T Consensus 111 I~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~------------ 178 (271)
T COG2171 111 IVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPL------------ 178 (271)
T ss_pred ecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCC------------
Confidence 4567777888888888888 444442 78888888888 44443 46666666666666665422111
Q ss_pred hhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccccc
Q 018109 290 LLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEAD 333 (360)
Q Consensus 290 ~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~ 333 (360)
+..|+.||+||.|+ +|.+..++.+|++|++..+..+....
T Consensus 179 ----~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 179 ----QANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred ----CCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 22347777777775 66555555555555555554444443
No 193
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.27 E-value=3.2e-06 Score=66.79 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=39.9
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCe---EeeeEecCCCEECCCcEEecCCCccc
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK---IKECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~---i~~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
.++||+++.|++++.|... +.|++++. +..++||++|.|+.++.+...
T Consensus 22 ~~~ig~~~~Ig~~~~i~~~------------------------~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~----- 72 (101)
T cd03354 22 GIVIGETAVIGDNCTIYQG------------------------VTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN----- 72 (101)
T ss_pred eEEECCCCEECCCCEEcCC------------------------CEECCCccCCcCCCCEECCCcEEcCCCEEECc-----
Confidence 3566666777776665333 55666664 567888888888888888653
Q ss_pred ccccCCceEEeCCeEE
Q 018109 332 ADRSAEGFYIRSGVTV 347 (360)
Q Consensus 332 ~~~~~~~~~i~~~~~~ 347 (360)
.+++++++|++++++
T Consensus 73 -~~Ig~~~~i~~~~~i 87 (101)
T cd03354 73 -ITIGDNVKIGANAVV 87 (101)
T ss_pred -CEECCCCEECCCCEE
Confidence 345555555555543
No 194
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.26 E-value=3.1e-06 Score=83.75 Aligned_cols=67 Identities=13% Similarity=0.356 Sum_probs=53.9
Q ss_pred EEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCccc
Q 018109 252 FIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE 331 (360)
Q Consensus 252 ~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~ 331 (360)
.+.++.||++|.|+ ++.|+++++ |.+ |.|+++|.|.+|+|+++|+||+++.+.++
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svI-g~~------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~~----- 366 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVL-SPN------------------VVVESGAEVEDSVLMDGVRIGRGAVVRRA----- 366 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEE-CCC------------------CEECCCCEEeeeEECCCCEECCCCEEEee-----
Confidence 35689999999998 999998655 554 99999999999999999999999999773
Q ss_pred ccccCCceEEeCCe
Q 018109 332 ADRSAEGFYIRSGV 345 (360)
Q Consensus 332 ~~~~~~~~~i~~~~ 345 (360)
++++++.|+.++
T Consensus 367 --ii~~~~~i~~~~ 378 (407)
T PRK00844 367 --ILDKNVVVPPGA 378 (407)
T ss_pred --EECCCCEECCCC
Confidence 444444444444
No 195
>PLN02357 serine acetyltransferase
Probab=98.26 E-value=2.1e-06 Score=82.02 Aligned_cols=69 Identities=30% Similarity=0.402 Sum_probs=46.6
Q ss_pred ceEECCCCEEcc---eEEe-eeEEecCeEECCCCEEece--------EEECCcccchhHHHHhhhhCCCcceEECCCCeE
Q 018109 239 DSIISHGSFITS---SFIE-HSVVGIRSRINANVHLKDT--------MMLGADFYETDAEVASLLAEGRVPVGIGENTKI 306 (360)
Q Consensus 239 ~~~i~~~~~i~~---~~i~-~~~ig~~~~i~~~~~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i 306 (360)
.+.||+|+.|.+ ++|. +++||++|.|..++.|+.. .++|++ +.||.|+.|
T Consensus 232 ~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~------------------V~IGagA~I 293 (360)
T PLN02357 232 GAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDG------------------VLIGAGTCI 293 (360)
T ss_pred CCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCC------------------eEECCceEE
Confidence 445566666662 3443 6889999999999988764 455554 677777666
Q ss_pred -eeeEecCCCEECCCcEEec
Q 018109 307 -KECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 307 -~~~~i~~~~~ig~~~~~~~ 325 (360)
+++.||+++.||+++++..
T Consensus 294 lggV~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 294 LGNITIGEGAKIGAGSVVLK 313 (360)
T ss_pred ECCeEECCCCEECCCCEECc
Confidence 3677777777777776654
No 196
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.25 E-value=4.2e-06 Score=66.08 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=16.7
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEec
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIAN 325 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~ 325 (360)
+.|+.++.+. .+.||++|.|++++.+.+
T Consensus 61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 61 VVIGAGAKILGNITIGDNVKIGANAVVTK 89 (101)
T ss_pred cEEcCCCEEECcCEECCCCEECCCCEECc
Confidence 5566665554 366666666666666654
No 197
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.24 E-value=4.4e-06 Score=66.85 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=17.3
Q ss_pred eeEEecCeEECCCCEEec--eEEECCc
Q 018109 255 HSVVGIRSRINANVHLKD--TMMLGAD 279 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~--~~~~~~~ 279 (360)
+..||+++.|++++.|.. .+.+|++
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~ 29 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSD 29 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCC
Confidence 456788888888888763 4566654
No 198
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.21 E-value=7.6e-06 Score=65.13 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=9.5
Q ss_pred ceEECCCCEEc-ceEEe
Q 018109 239 DSIISHGSFIT-SSFIE 254 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~ 254 (360)
++.||++|.|+ ++.|.
T Consensus 21 ~v~IG~~~~Ig~~~~i~ 37 (109)
T cd04647 21 GITIGDNVLIGPNVTIY 37 (109)
T ss_pred ceEECCCCEECCCCEEE
Confidence 45666666666 44444
No 199
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.21 E-value=1.1e-05 Score=70.19 Aligned_cols=78 Identities=28% Similarity=0.405 Sum_probs=46.3
Q ss_pred EECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhh--hhCCCcceEECCCCeE-eeeEecCCCEE
Q 018109 241 IISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL--LAEGRVPVGIGENTKI-KECIIDKNARI 317 (360)
Q Consensus 241 ~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ig~~~~i-~~~~i~~~~~i 317 (360)
.||++..|.++. ..+||+.+.||++|.|...+.+|..--+.- +|- +++| +.||.|++| ++-.||+|+.|
T Consensus 75 ~IG~g~fIdHg~--GvVIgeta~IGddv~I~~gVTLGgtg~~~g---~RhPtIg~~---V~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 75 KIGRGLFIDHGT--GVVIGETAVIGDDVTIYHGVTLGGTGKESG---KRHPTIGNG---VYIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred eECCceEEcCCc--eEEEcceeEECCCeEEEcceEecCCCCcCC---CCCCccCCC---eEECCCCEEEcceEECCCCEE
Confidence 455555555322 456777777777777777777776311110 111 2222 777777776 47777888888
Q ss_pred CCCcEEecC
Q 018109 318 GKNVIIANS 326 (360)
Q Consensus 318 g~~~~~~~~ 326 (360)
|+|+++...
T Consensus 147 GA~sVVlkd 155 (194)
T COG1045 147 GAGSVVLKD 155 (194)
T ss_pred CCCceEccC
Confidence 888777653
No 200
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.18 E-value=4.8e-06 Score=73.23 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=5.9
Q ss_pred eEECCCCeE
Q 018109 298 VGIGENTKI 306 (360)
Q Consensus 298 ~~ig~~~~i 306 (360)
|.|+.+|.|
T Consensus 100 v~I~~~v~i 108 (183)
T PRK10092 100 CMLAPGVHI 108 (183)
T ss_pred CEECCCCEE
Confidence 666666666
No 201
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.92 E-value=4.3e-05 Score=67.20 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=65.8
Q ss_pred ceEECCCCEEc-ceEE---eeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecC
Q 018109 239 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 313 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~ 313 (360)
+..+|..|.++ ++.+ .+.+||+++.+++++.|....+..+. ..+.. ....+..++.||++|+|+ +++|.+
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~-~~~~~----~~~~~~~~v~IG~~vwIG~~a~Ilp 141 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDF-VTANI----GALVGAGPVTIGEDVWIGAGAVILP 141 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCCh-hhccc----CCceecCCeEECCCeEEcCccEECC
Confidence 55777777777 5553 25678888888888888765444421 11110 002223358888888887 788888
Q ss_pred CCEECCCcEEecCCCcccccccCCceEEeCCeEEEcCCcEe
Q 018109 314 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 354 (360)
Q Consensus 314 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 354 (360)
+++||.+++++..+.+.+. +.+++++.|.++++
T Consensus 142 GV~IG~gavigagsVVtkd--------vp~~~iv~G~Pa~v 174 (190)
T COG0110 142 GVTIGEGAVIGAGSVVTKD--------VPPYGIVAGNPARV 174 (190)
T ss_pred CEEECCCcEEeeCCEEeCc--------cCCCeEEeCCcceE
Confidence 8888888888887766653 33444555555543
No 202
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.86 E-value=5e-05 Score=64.25 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=15.5
Q ss_pred eEEecCeEECC-CCEEec-eEEECCc
Q 018109 256 SVVGIRSRINA-NVHLKD-TMMLGAD 279 (360)
Q Consensus 256 ~~ig~~~~i~~-~~~i~~-~~~~~~~ 279 (360)
..||+++.|++ ++.+.. .+.+|++
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG~~ 27 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIGKF 27 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEECCC
Confidence 46788888888 455543 5566654
No 203
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.85 E-value=2.1e-05 Score=65.12 Aligned_cols=111 Identities=13% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCCCCCcee-cCceee-ceEECCCCEEc-ceEEe----eeEEecCeEECCCCEEec-------------eEEECCcccch
Q 018109 224 RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD-------------TMMLGADFYET 283 (360)
Q Consensus 224 ~~~~~~~~~-~~~~i~-~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~-------------~~~~~~~~~~~ 283 (360)
+.|.|.+++ ..+.|+ +..|+++|++. .+++. .-+||+++.|.+++.|.+ -+++|.+|+-.
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 344454444 233333 78888888888 45542 578899999988888876 45555543211
Q ss_pred hHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCcccccccCCceEE
Q 018109 284 DAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI 341 (360)
Q Consensus 284 ~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i 341 (360)
++|-.. ..++|++..|+ .|.+|++|.+.++|.++....+..+..+.++..+
T Consensus 89 ---Vgc~s~----A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~v 140 (190)
T KOG4042|consen 89 ---VGCKSS----AKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSV 140 (190)
T ss_pred ---eechhh----hhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceE
Confidence 111000 03456655555 4666666665555555555444444444444433
No 204
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.84 E-value=0.00014 Score=77.96 Aligned_cols=196 Identities=19% Similarity=0.240 Sum_probs=117.9
Q ss_pred eEEEEcCceeeecC--HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCC--CceEEEEecCCccccccccccccc
Q 018109 49 DVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE--GRVLSFSEKPKGKDLKAMAVDTTV 124 (360)
Q Consensus 49 ~fLVv~gD~i~~~d--l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~--g~V~~~~ekp~~~~~~~~~i~~~~ 124 (360)
..+|..||.+..++ +.+ -..++++......+.+-.++.|++..|.+ +++..+..||+.+.-..
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a------- 220 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGG------- 220 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHh-------
Confidence 79999999976665 222 12255555555544434578999988866 68889999998654110
Q ss_pred cccccccccccCceeeeeEEEEeHHHHHHHHHhhCC------CCcchhhcccccc----------cccCceEEEEe-CCc
Q 018109 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP------TANDFGSEIIPAS----------ANEQFLKAYLF-NDY 187 (360)
Q Consensus 125 ~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~------~~~~~~~~~l~~~----------i~~~~I~~~~~-~g~ 187 (360)
.......++|+|+|+|+.+....++..... ...++..|++..+ +.+.++...++ ++.
T Consensus 221 ------~~~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 221 ------LSKTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred ------hhcCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 111245789999999999988877654221 1234444555432 22456666776 478
Q ss_pred eeecCCHHHHHHHHHHhhcCCCCCCccCCCCceeccCCCCCCceecCceeeceEECCCCEEc-ceE-EeeeEEecCeEEC
Q 018109 188 WEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSF-IEHSVVGIRSRIN 265 (360)
Q Consensus 188 w~digtp~~~~~a~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~-i~~~~ig~~~~i~ 265 (360)
|+.+||-..|+.....+.... .....+..+..-..| .+.+.++.++.++.++ +.. |++|.|+.+..|+
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~------~~~~~i~~~~~~~~~----~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLV------TDQRRIMHRKVKPHP----AMFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHh------hhhhhhhccccCCCC----ceEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 999999998886433322211 000011111000111 1344577888888877 323 5677888888888
Q ss_pred CCCEEece
Q 018109 266 ANVHLKDT 273 (360)
Q Consensus 266 ~~~~i~~~ 273 (360)
.+++|...
T Consensus 365 ~~~Iisgv 372 (974)
T PRK13412 365 SRSIITGV 372 (974)
T ss_pred CCcEEecc
Confidence 87777654
No 205
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.83 E-value=0.00012 Score=61.97 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=19.3
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecCCCcc
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ 330 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~ 330 (360)
+.||++|.|. +|+|..+++||++++++..+.+.
T Consensus 74 ~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 74 VIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred cEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 6666666665 56666666666666665554443
No 206
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=7.4e-05 Score=68.90 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=52.6
Q ss_pred ccCCCCceeccCCCCCCcee-------cCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchh
Q 018109 213 FYDATKPIYTSRRNLPPSKI-------DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETD 284 (360)
Q Consensus 213 ~~~~~~~v~~~~~~~~~~~~-------~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~ 284 (360)
+|++++++++++.|+|++.| +++++.+++|-++|.|. ++++.+++||-+|.||..++++..=+...
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s------ 363 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPS------ 363 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccC------
Confidence 45666666666666655444 24455556666666666 56666666666666666655543211110
Q ss_pred HHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcc
Q 018109 285 AEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQ 330 (360)
Q Consensus 285 ~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~ 330 (360)
-+...+.-+++|.+|.+++-|.+.|+-.++
T Consensus 364 ----------------~~~~~~a~Tilga~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 364 ----------------PNLPFAALTILGADVSVEDEVIVLNSIVLP 393 (407)
T ss_pred ----------------CCCCcceeEEecccceecceeEEeeeeEec
Confidence 011112347777777777777777664433
No 207
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.71 E-value=9.8e-05 Score=64.95 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=11.0
Q ss_pred eeEEecCeEECCCCEE
Q 018109 255 HSVVGIRSRINANVHL 270 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i 270 (360)
+..+|+++.++.++.+
T Consensus 67 ~~~iG~~~~i~~~~~~ 82 (190)
T COG0110 67 NLTIGDLCFIGVNVVI 82 (190)
T ss_pred ceEECCeeEEcCCcEE
Confidence 5567777777777765
No 208
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.69 E-value=6.6e-05 Score=66.46 Aligned_cols=79 Identities=25% Similarity=0.425 Sum_probs=46.6
Q ss_pred CeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecC-CCccc-ccccCCc
Q 018109 261 RSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS-EGIQE-ADRSAEG 338 (360)
Q Consensus 261 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~-~~~~~-~~~~~~~ 338 (360)
++.|.|.++|+..+.++.. -| +.||+-+ +||.+|.|.-++.++.. ...+. |=.|+||
T Consensus 148 gvdihpaa~ig~gilldha-------------tg---vvigeTA-----vvg~~vSilH~Vtlggtgk~~gdrhP~Igd~ 206 (269)
T KOG4750|consen 148 GVDIHPAAKIGKGILLDHA-------------TG---VVIGETA-----VVGDNVSILHPVTLGGTGKGSGDRHPKIGDN 206 (269)
T ss_pred cccccchhhcccceeeccc-------------cc---eeeccee-----EeccceeeecceeeccccccccccCCcccCC
Confidence 4567777777777777651 11 4455444 44444444444444432 12222 2278888
Q ss_pred eEEeCCeE-----EEcCCcEeCCCccC
Q 018109 339 FYIRSGVT-----VILKNSVITDGFVI 360 (360)
Q Consensus 339 ~~i~~~~~-----~ig~~~~i~~g~~i 360 (360)
++||.|++ .||+|++|+||++|
T Consensus 207 vliGaGvtILgnV~IGegavIaAGsvV 233 (269)
T KOG4750|consen 207 VLIGAGVTILGNVTIGEGAVIAAGSVV 233 (269)
T ss_pred eEEccccEEeCCeeECCCcEEeccceE
Confidence 88887775 56788888888875
No 209
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.62 E-value=0.00021 Score=75.36 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=54.2
Q ss_pred ceEECCCCEEcceEE---eeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCC
Q 018109 239 DSIISHGSFITSSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKN 314 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~ 314 (360)
.+.||++|.|.+..+ ...+||++|.|+++|.+....+-++.. .- ++++||+||.|+ +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l-----------~~--g~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRL-----------HT--GPVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCce-----------ee--cCcEECCCcEECCCCEEcCC
Confidence 567778887774333 256688888888888876532221100 00 127888888886 7888888
Q ss_pred CEECCCcEEecCCCccccccc
Q 018109 315 ARIGKNVIIANSEGIQEADRS 335 (360)
Q Consensus 315 ~~ig~~~~~~~~~~~~~~~~~ 335 (360)
++||++++++..+.+.++..+
T Consensus 179 ~~Igd~a~vgagS~V~~g~~v 199 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQGGQSI 199 (695)
T ss_pred CEECCCCEECCCCEecCCccc
Confidence 888888888877666654333
No 210
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00018 Score=63.77 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=52.8
Q ss_pred eEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEEC
Q 018109 240 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 318 (360)
Q Consensus 240 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig 318 (360)
+.||+|-.+.+++ ..+||+-..||.++.|.+.+-+|+.+.+.. ++- -.||+|++|+ .+.|-.++.||
T Consensus 155 a~ig~gilldhat--gvvigeTAvvg~~vSilH~Vtlggtgk~~g--------drh--P~Igd~vliGaGvtILgnV~IG 222 (269)
T KOG4750|consen 155 AKIGKGILLDHAT--GVVIGETAVVGDNVSILHPVTLGGTGKGSG--------DRH--PKIGDNVLIGAGVTILGNVTIG 222 (269)
T ss_pred hhcccceeecccc--ceeecceeEeccceeeecceeecccccccc--------ccC--CcccCCeEEccccEEeCCeeEC
Confidence 3556666666544 688999999999999999999987432221 111 2677777775 55566667777
Q ss_pred CCcEEecCCCccc
Q 018109 319 KNVIIANSEGIQE 331 (360)
Q Consensus 319 ~~~~~~~~~~~~~ 331 (360)
.|++++.++.+-+
T Consensus 223 egavIaAGsvV~k 235 (269)
T KOG4750|consen 223 EGAVIAAGSVVLK 235 (269)
T ss_pred CCcEEeccceEEe
Confidence 7777666554433
No 211
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.46 E-value=0.0002 Score=67.12 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=31.7
Q ss_pred eEECCCCeEeeeEecCCCEECCCcEEecCCCcccccccCCceEEeCC
Q 018109 298 VGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 344 (360)
Q Consensus 298 ~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (360)
..++.+++|..+++|+++.||.++++-+.+.+++++.|.|.-++.++
T Consensus 306 ~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 306 DYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred ceechhHHHHhhhccccccccCceEEecccEeccceEEecccccccc
Confidence 55566666677788888888888877777666666666555444444
No 212
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.40 E-value=0.0001 Score=61.19 Aligned_cols=103 Identities=9% Similarity=0.111 Sum_probs=65.0
Q ss_pred cCCCCceeccCCCCCCcee-cCceee----ceEECCCCEEc-ceEEee--------------eEEecCeEECCCCEEece
Q 018109 214 YDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEH--------------SVVGIRSRINANVHLKDT 273 (360)
Q Consensus 214 ~~~~~~v~~~~~~~~~~~~-~~~~i~----~~~i~~~~~i~-~~~i~~--------------~~ig~~~~i~~~~~i~~~ 273 (360)
+..++.+..++.|.++|++ ..+++. +.+||+||.|. .++|.+ -+||.++.+.=+|... .
T Consensus 17 VCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~-A 95 (190)
T KOG4042|consen 17 VCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSS-A 95 (190)
T ss_pred EEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhh-h
Confidence 3344455556666666666 333332 56888888877 554422 4566666666665543 3
Q ss_pred EEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEECCCcEEecCCCccccccc
Q 018109 274 MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRS 335 (360)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~~~~~~~~~~ 335 (360)
..+|++ ..|++.|+++ ++.+.++|.||+.|.+-....++++..+
T Consensus 96 ~kvGd~------------------NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~v 140 (190)
T KOG4042|consen 96 KKVGDR------------------NVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSV 140 (190)
T ss_pred hhhcCc------------------ceEeeeeEecCCcEEcCCceeccceEEecccccCCcceE
Confidence 455665 6677777776 5777788888888888777777776643
No 213
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=97.40 E-value=0.0019 Score=58.04 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=86.2
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC-ce
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG-RV 103 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g-~V 103 (360)
|+.++++++..+++.. ....+.++++.||. +....+.++++.|++.+++.++...+... ...++.. .+++| .+
T Consensus 79 ~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~ 154 (223)
T cd02513 79 SSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHR--FPWRALG-LDDNGLEP 154 (223)
T ss_pred CcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCc--CcHHhee-eccCCcee
Confidence 7889999999887520 00126899999999 44556899999998877787777766554 2223322 22233 22
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYL 183 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~ 183 (360)
..+.+.... .. ++.. .....++|+|+++++.|.+. . .+ -+.++..|.
T Consensus 155 ~~~~~~~~~-~~-------------q~~~--~~~~~n~~~y~~~~~~~~~~---~-----~~---------~g~~~~~~~ 201 (223)
T cd02513 155 VNYPEDKRT-RR-------------QDLP--PAYHENGAIYIAKREALLES---N-----SF---------FGGKTGPYE 201 (223)
T ss_pred ccCcccccC-Cc-------------CCCh--hHeeECCEEEEEEHHHHHhc---C-----Cc---------cCCCeEEEE
Confidence 222111100 00 0000 13567899999999977432 0 11 156777777
Q ss_pred eCC-ceeecCCHHHHHHHHH
Q 018109 184 FND-YWEDIGTIRSFFEANL 202 (360)
Q Consensus 184 ~~g-~w~digtp~~~~~a~~ 202 (360)
.+. .-.||.+++++..+..
T Consensus 202 ~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 202 MPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred eCccceeCCCCHHHHHHHHH
Confidence 754 6899999999988764
No 214
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.32 E-value=0.00049 Score=72.57 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=41.9
Q ss_pred ceEECCCCEEcceEE-e--eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCC
Q 018109 239 DSIISHGSFITSSFI-E--HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKN 314 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i-~--~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~ 314 (360)
.+.||++|.|....+ + -+.||++|.|++++.|.....-+..| +.+ +++||++|.|+ +|+|..+
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~------------~~~-~v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVM------------KSD-TVTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecccccccc------------ccC-CeEECCCCEECCCCEECCC
Confidence 567777777774322 2 36788888888888886432211100 000 15556655554 4555555
Q ss_pred CEECCCcEEecC
Q 018109 315 ARIGKNVIIANS 326 (360)
Q Consensus 315 ~~ig~~~~~~~~ 326 (360)
++||+++.++..
T Consensus 664 ~~IGd~a~Ig~~ 675 (695)
T TIGR02353 664 VVMGEGSVLGPD 675 (695)
T ss_pred CEECCCCEECCC
Confidence 555555555544
No 215
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=97.23 E-value=0.0063 Score=55.74 Aligned_cols=141 Identities=12% Similarity=0.174 Sum_probs=86.2
Q ss_pred CeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCC---CcccEEEECCCCceEEEEecCCccccccccccc
Q 018109 48 EDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRA---SDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDT 122 (360)
Q Consensus 48 ~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~---~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~ 122 (360)
+.++++.||. +.+.+ +.++++.+++...+++.+..+..++.. .+...+..|.+|+.+.|...+-....+.
T Consensus 89 d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~----- 163 (238)
T TIGR00466 89 ERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDF----- 163 (238)
T ss_pred CEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCc-----
Confidence 5788899999 66555 789999886666677777777654211 1122233466788777765532111000
Q ss_pred cccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh--hcccccccccCceEEEEeCCc-eeecCCHHHH
Q 018109 123 TVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--SEIIPASANEQFLKAYLFNDY-WEDIGTIRSF 197 (360)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--~~~l~~~i~~~~I~~~~~~g~-w~digtp~~~ 197 (360)
.+...+|+. ...+...|+|.|++++|.++..- .++..... -+.|+.+-.+.+|.....+.. -..++||+|+
T Consensus 164 ~~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~-~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 164 FAKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAW-KPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccccccccc---cceeEEEEEEeCCHHHHHHHHhC-CCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 000112221 12567999999999999887433 33321111 245666656889999887655 4699999986
No 216
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=97.12 E-value=0.0036 Score=56.13 Aligned_cols=136 Identities=17% Similarity=0.142 Sum_probs=84.8
Q ss_pred cHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEE
Q 018109 28 TADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 105 (360)
Q Consensus 28 Ta~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~ 105 (360)
..++++.+...+++ .+.++++.||. +.+.+ +..+++.+++.+ ++++..+.. +++...+++|.+..
T Consensus 77 ~~~sl~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~------~~v~~~~~~g~~~~ 143 (217)
T TIGR00453 77 RQDSVRNGLKALKD-----AEWVLVHDAARPFVPKELLDRLLEALRKAG--AAILALPVA------DTLKRVEADGFIVE 143 (217)
T ss_pred HHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--cEEEeEecc------ceEEEEcCCCceee
Confidence 45778888877721 37899999999 55555 789999877643 344444443 33444555677777
Q ss_pred EEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc-ccCceEEEEe
Q 018109 106 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-NEQFLKAYLF 184 (360)
Q Consensus 106 ~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i-~~~~I~~~~~ 184 (360)
+.+... -...++ .|+|+.+.|..++.........+. +....+. .+.++..++.
T Consensus 144 ~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~-d~~~~~~~~g~~i~~~~~ 197 (217)
T TIGR00453 144 TVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEGFEIT-DDASAVEKLGGKVALVEG 197 (217)
T ss_pred cCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcCCCCC-cHHHHHHHcCCCeEEEec
Confidence 765321 123444 699999988877654211111111 1111111 1577888887
Q ss_pred CCceeecCCHHHHHHHHH
Q 018109 185 NDYWEDIGTIRSFFEANL 202 (360)
Q Consensus 185 ~g~w~digtp~~~~~a~~ 202 (360)
+..+++++||++|..+..
T Consensus 198 ~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 198 DALNFKITTPEDLALAEA 215 (217)
T ss_pred CccccccCCHHHHHHHHH
Confidence 777789999999988865
No 217
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.94 E-value=0.0011 Score=41.78 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=4.5
Q ss_pred EecCeEECCCCE
Q 018109 258 VGIRSRINANVH 269 (360)
Q Consensus 258 ig~~~~i~~~~~ 269 (360)
||+++.|++++.
T Consensus 4 Ig~~~~i~~~~~ 15 (36)
T PF00132_consen 4 IGDNVIIGPNAV 15 (36)
T ss_dssp EETTEEEETTEE
T ss_pred EcCCCEECCCcE
Confidence 333333333333
No 218
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=96.93 E-value=0.0062 Score=55.08 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=85.7
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
+.+++++.+...+++ .+.++++.||. +.+.+ ++++++.+++.+ .+++..+..+ + +..+ +++|.+.
T Consensus 81 ~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~--~--~~~v--~~~g~~~ 147 (227)
T PRK00155 81 ERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKD--T--IKRS--DDGGGIV 147 (227)
T ss_pred hHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEeccc--c--EEEE--cCCCcee
Confidence 358899999888743 36899999998 55554 799999887654 3344444433 1 2222 4456666
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccc---cc--ccCce
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPA---SA--NEQFL 179 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~---~i--~~~~I 179 (360)
++. .+.. -.... +.|+|+.+.|..++...... +.++++ ++ .+.++
T Consensus 148 ~~~---~r~~---------------------~~~~~-~p~~f~~~~l~~~~~~~~~~-----~~~~~d~~~~~~~~~~~i 197 (227)
T PRK00155 148 DTP---DRSG---------------------LWAAQ-TPQGFRIELLREALARALAE-----GKTITDDASAVERLGKPV 197 (227)
T ss_pred ecC---ChHH---------------------heeee-CCccchHHHHHHHHHHHHhc-----CCCcCcHHHHHHHcCCCe
Confidence 553 2111 11233 38999999888876543211 112222 22 24677
Q ss_pred EEEEeCCceeecCCHHHHHHHHHHhhc
Q 018109 180 KAYLFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 180 ~~~~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
..++.+..+++|+||++|..+...+.+
T Consensus 198 ~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 198 RLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHh
Confidence 777766678899999999999876543
No 219
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.90 E-value=0.0035 Score=55.97 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=34.9
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEe-eeEecCCCEE
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARI 317 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~~i~~~~~i 317 (360)
+.+||+++.+. -.++|+...+++++.|...++.++ ++|+.+|.+. |.+++.++-|
T Consensus 22 dViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi 77 (277)
T COG4801 22 DVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI 77 (277)
T ss_pred cEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence 55556555554 235555555555555555555543 5666666654 5555555555
Q ss_pred CCCcEEecC
Q 018109 318 GKNVIIANS 326 (360)
Q Consensus 318 g~~~~~~~~ 326 (360)
|.++.|...
T Consensus 78 GE~~sI~gk 86 (277)
T COG4801 78 GEFSSIKGK 86 (277)
T ss_pred eccceeeee
Confidence 555555443
No 220
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.85 E-value=0.0055 Score=54.77 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=58.4
Q ss_pred ceeccCCCCCCceecCceeeceEECCCCEEc-ceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcc
Q 018109 219 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 297 (360)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
.+..++.|++++.++ -.++++...++ ++.|...+++.+++|..+|.+..+++.+++
T Consensus 18 vv~gdViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ 74 (277)
T COG4801 18 VVKGDVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------ 74 (277)
T ss_pred EEeccEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------
Confidence 344555666666552 22333333333 344445677788888888888888888876
Q ss_pred eEECCCCeEe-eeEecCCCEECCCcEEecC
Q 018109 298 VGIGENTKIK-ECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 298 ~~ig~~~~i~-~~~i~~~~~ig~~~~~~~~ 326 (360)
++||+.+.|+ ..++..+..||+.++|.++
T Consensus 75 ayiGE~~sI~gkl~v~gdLdig~dV~Iegg 104 (277)
T COG4801 75 AYIGEFSSIKGKLTVIGDLDIGADVIIEGG 104 (277)
T ss_pred eEEeccceeeeeEEEecccccccceEEecC
Confidence 8888888887 6788888888888888764
No 221
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.81 E-value=0.0018 Score=53.38 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=18.6
Q ss_pred ceEECCCCEEc-ceEEe-------------eeEEecCeEECCCCEE
Q 018109 239 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHL 270 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-------------~~~ig~~~~i~~~~~i 270 (360)
++.+|..|++. .++|+ ...||+++.|++.|.+
T Consensus 54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVV 99 (184)
T KOG3121|consen 54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVV 99 (184)
T ss_pred cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEe
Confidence 56667777666 44442 2456666666666654
No 222
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.78 E-value=0.0018 Score=40.73 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=20.1
Q ss_pred ceEECCCCEEc-ceEEe-eeEEecCeEECCCCEEe
Q 018109 239 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK 271 (360)
Q Consensus 239 ~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~ 271 (360)
++.|+++|.|+ ++.|. ++.||+++.|++++.|+
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 35677777777 44443 56666777666666654
No 223
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=96.42 E-value=0.014 Score=52.15 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=84.7
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
+..++++.+...+++ ...+.++++.||. +.+.+ ++++++.+++.++ .+...+..+ +....|++|.+.
T Consensus 79 ~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~~------~~~~~~~~g~~~ 147 (218)
T cd02516 79 TRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVTD------TIKRVDDDGVVV 147 (218)
T ss_pred HHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc------cEEEecCCCcee
Confidence 457889999988741 1147899999998 55555 7999998876553 333344332 122356678888
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccc---cc--cCce
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPAS---AN--EQFL 179 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~---i~--~~~I 179 (360)
++.+..+ -..+.+. ++|+.+.|..++...... +.++++. ++ +.++
T Consensus 148 ~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~-----~~~~td~~~~~~~~~~~v 197 (218)
T cd02516 148 ETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEE-----GEEFTDDASLVEAAGGKV 197 (218)
T ss_pred ecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhc-----CCCcCcHHHHHHHcCCCe
Confidence 8775321 2356677 999999998887553211 2233332 22 3567
Q ss_pred EEEEeCCceeecCCHHHHHH
Q 018109 180 KAYLFNDYWEDIGTIRSFFE 199 (360)
Q Consensus 180 ~~~~~~g~w~digtp~~~~~ 199 (360)
..++-+..-+||.||++|..
T Consensus 198 ~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 198 ALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred EEEecCcccccCCCHHHHhh
Confidence 77776556679999999853
No 224
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.16 E-value=0.0072 Score=37.70 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=4.9
Q ss_pred EEecCeEECCCCEE
Q 018109 257 VVGIRSRINANVHL 270 (360)
Q Consensus 257 ~ig~~~~i~~~~~i 270 (360)
.||++|.|++++.+
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 34444444444444
No 225
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=96.14 E-value=0.15 Score=46.16 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=90.7
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCce
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 103 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 103 (360)
.|+.++++++...+++. ...+.++++.+|. +.+ .++.++++.+++.+++.++.+.+.... + .+. ...+++|++
T Consensus 76 ~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~-~-~~~-~~~~~~g~~ 150 (222)
T TIGR03584 76 TGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFP-I-QRA-FKLKENGGV 150 (222)
T ss_pred CCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCC-h-HHh-eEECCCCcE
Confidence 58899999999887420 1136799999999 444 458999999988778877777665431 1 122 344456776
Q ss_pred EEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEE
Q 018109 104 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYL 183 (360)
Q Consensus 104 ~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~ 183 (360)
..+.........+. + ...+..++.+|+++++.|.. .. .+ + +.++..|.
T Consensus 151 ~~~~~~~~~~~rQd--~-------------~~~y~~nga~y~~~~~~~~~---~~-----~~----~-----~~~~~~~~ 198 (222)
T TIGR03584 151 EMFFPEHFNTRSQD--L-------------EEAYHDAGQFYWGKSQAWLE---SG-----PI----F-----SPHSIPIV 198 (222)
T ss_pred EecCCCcccCCCCC--C-------------chheeeCCeEEEEEHHHHHh---cC-----Cc----c-----CCCcEEEE
Confidence 65542211000000 0 01356799999999997732 21 11 1 45677887
Q ss_pred eC-CceeecCCHHHHHHHHHHh
Q 018109 184 FN-DYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 184 ~~-g~w~digtp~~~~~a~~~~ 204 (360)
.+ ..-.||.+++++..|...+
T Consensus 199 m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 199 LPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred eCccceeCCCCHHHHHHHHHHH
Confidence 75 4689999999998886543
No 226
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=96.01 E-value=0.077 Score=52.02 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceE
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 104 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 104 (360)
+..++++.+...++ .+.+++..||. +.+.+ ++.+++..++. +.++...++.+ +..|+...+| .+++.
T Consensus 82 ~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~D--tik~~~~tld-R~~l~ 150 (378)
T PRK09382 82 TRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVAD--TLKRANETVD-REGLK 150 (378)
T ss_pred hHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEecc--CcEEeeeEcC-cccEE
Confidence 35778999988885 26789999986 55555 68888876543 46777788777 5667655554 34554
Q ss_pred EEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc-ccCceEEEE
Q 018109 105 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-NEQFLKAYL 183 (360)
Q Consensus 105 ~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i-~~~~I~~~~ 183 (360)
.+ +.|+... .+.+....+. ...+ .|..+.+. .+.+|..++
T Consensus 151 ~~-QTPQ~f~---------------------------------~~~l~~a~~~----~~~~-TDd~sl~~~~G~~V~~v~ 191 (378)
T PRK09382 151 LI-QTPQLSR---------------------------------TKTLKAAADG----RGDF-TDDSSAAEAAGGKVALVE 191 (378)
T ss_pred EE-ECCCCCC---------------------------------HHHHHHHHhC----CCCc-ccHHHHHHHcCCcEEEEE
Confidence 44 6665322 1112111111 1111 11122221 267888888
Q ss_pred eCCceeecCCHHHHHHHHHHhhc
Q 018109 184 FNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 184 ~~g~w~digtp~~~~~a~~~~l~ 206 (360)
-+..|+++++|+|+..++..+..
T Consensus 192 g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 192 GSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCCcccCCCCHHHHHHHHHHhcc
Confidence 88899999999999999876643
No 227
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=95.95 E-value=0.17 Score=45.43 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=104.3
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCC-C-Cccc-EEEECC
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSR-A-SDFG-LMKINN 99 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~-~-~~~g-~v~~d~ 99 (360)
.-|| +.+..+..++.- ..++-++=+-||. +.... +.++++..++.+++|+-+..+..+++ . ...- -+..|+
T Consensus 74 ~SGT-dR~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~ 149 (247)
T COG1212 74 QSGT-DRLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDK 149 (247)
T ss_pred CCcc-HHHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcC
Confidence 3466 446666666642 1245666678998 55544 68888888888777766666665431 1 1111 244688
Q ss_pred CCceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchh--hcccccccccC
Q 018109 100 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG--SEIIPASANEQ 177 (360)
Q Consensus 100 ~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~--~~~l~~~i~~~ 177 (360)
+|+-+.|.-.|-....+. . +. ...|.-.|+|.|++++|.++..-. +..-+.. -+.|+-+-.+.
T Consensus 150 ~g~ALYFSRs~iP~~rd~-~------~~-------~p~l~HIGIYayr~~~L~~f~~~~-ps~LE~~E~LEQLR~Le~G~ 214 (247)
T COG1212 150 EGYALYFSRAPIPYGRDN-F------GG-------TPFLRHIGIYAYRAGFLERFVALK-PSPLEKIESLEQLRVLENGE 214 (247)
T ss_pred CCcEEEEEcCCCCCcccc-c------CC-------cchhheeehHHhHHHHHHHHHhcC-CchhHHHHHHHHHHHHHcCC
Confidence 899999987775433111 0 00 145778999999999998875432 3211111 24556555688
Q ss_pred ceEEEEeCCce-eecCCHHHHHHHHHHhhc
Q 018109 178 FLKAYLFNDYW-EDIGTIRSFFEANLALTA 206 (360)
Q Consensus 178 ~I~~~~~~g~w-~digtp~~~~~a~~~~l~ 206 (360)
+|.....+..- .-+.||+||.++.+.+..
T Consensus 215 kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 215 KIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred eeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 99998887555 899999999999877653
No 228
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.82 E-value=0.015 Score=36.24 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=4.7
Q ss_pred EecCCCEECCCcEE
Q 018109 310 IIDKNARIGKNVII 323 (360)
Q Consensus 310 ~i~~~~~ig~~~~~ 323 (360)
.||++|.||+++.+
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 34444444444443
No 229
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=94.97 E-value=0.2 Score=45.29 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=81.3
Q ss_pred HHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEE
Q 018109 29 ADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF 106 (360)
Q Consensus 29 a~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~ 106 (360)
.++++.+...+++ .+.++++.||. +.+.+ +.++++.+++.++. +...++.+ .+....++.+...
T Consensus 85 ~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d-------ti~~~~~~~~~~~ 150 (230)
T PRK13385 85 QESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD-------TVKRVKDKQVIET 150 (230)
T ss_pred HHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEeccc-------eEEEEcCCeeEec
Confidence 3888888887753 35678889999 66666 68999988776543 33333322 1222123544333
Q ss_pred EecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhccccccc-ccCceEEEEeC
Q 018109 107 SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-NEQFLKAYLFN 185 (360)
Q Consensus 107 ~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i-~~~~I~~~~~~ 185 (360)
.+ +. ..+..-+.|.|+.+.|.+..+........+ .+....+. .+.+|..++-+
T Consensus 151 i~---r~----------------------~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~-td~~~~~~~~g~~v~~v~~~ 204 (230)
T PRK13385 151 VD---RN----------------------ELWQGQTPQAFELKILQKAHRLASEQQFLG-TDEASLVERSPHPVKLVQGS 204 (230)
T ss_pred cC---HH----------------------HHhhhcCCceeeHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCCEEEEECC
Confidence 22 11 112233588999888877654321111111 11111111 25778888877
Q ss_pred CceeecCCHHHHHHHHHHhhc
Q 018109 186 DYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 186 g~w~digtp~~~~~a~~~~l~ 206 (360)
...+.|.||+++..+...+.+
T Consensus 205 ~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 205 YYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred cccCcCCCHHHHHHHHHHHhh
Confidence 788999999999999766643
No 230
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=91.90 E-value=1.4 Score=38.59 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=32.0
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHc
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQS 73 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~ 73 (360)
.|+.++++.+....+ .+.++++.||. +.+.+ +..+++.+++.
T Consensus 74 ~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 74 PGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred CCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 688899999887654 37899999999 65655 67888765443
No 231
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=91.66 E-value=0.37 Score=40.62 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=41.4
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 82 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~tll~~ 82 (360)
-.|++++|+.+...+.. .++|++++||. +.+.+ +.++++.+++.++++++...
T Consensus 69 ~~G~~~sl~~a~~~~~~-----~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 69 GQGPLASLLAALSQLPS-----SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp SCSHHHHHHHHHHTSTT-----SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cCChHHHHHHHHHhccc-----CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 47999999999998832 48999999999 44444 79999999887777665443
No 232
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=90.33 E-value=10 Score=38.28 Aligned_cols=232 Identities=14% Similarity=0.094 Sum_probs=117.0
Q ss_pred CCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC--ceEEEEecCCccccccccccccc
Q 018109 47 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTV 124 (360)
Q Consensus 47 ~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g--~V~~~~ekp~~~~~~~~~i~~~~ 124 (360)
-+.+.|.+.|.+...-=-.++.+|.+++++++|=+.+-..+. .+-|.+.. .+| +|+++.+-|+...... +
T Consensus 213 ~eyifv~nvDNLga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~-~dgk~~lvEysqvp~e~~~~f---~--- 284 (469)
T PLN02474 213 KEYVFIANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLAD-VKGGTLIS-YEGKVQLLEIAQVPDEHVNEF---K--- 284 (469)
T ss_pred CEEEEEEecCccccccCHHHHHHHHhcCCceEEEEeecCCCC-CCccEEEE-ECCEEEEEEEecCCHHHHHhh---c---
Confidence 479999999997433224678888889988877555433221 23465543 355 5777777665432100 0
Q ss_pred cccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcch-------hhcccc------ccccc-CceEEEEe-CCcee
Q 018109 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF-------GSEIIP------ASANE-QFLKAYLF-NDYWE 189 (360)
Q Consensus 125 ~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~-------~~~~l~------~~i~~-~~I~~~~~-~g~w~ 189 (360)
. ...-.+.+++.++|+-+.+.++++.......-. ...+++ ++++- .+..++.+ ...+.
T Consensus 285 -----~--~~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~ 357 (469)
T PLN02474 285 -----S--IEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFL 357 (469)
T ss_pred -----c--cccceeeeeeeEEEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhcc
Confidence 0 012467899999999999988765321100000 000111 11110 12223332 13466
Q ss_pred ecCCHHHHHHHHHHhhcCCCCCCccCCCC-ceecc--CCCCCCce-ecCceeeceEE-CCCCEEcceEEeeeEEecCeEE
Q 018109 190 DIGTIRSFFEANLALTAHPPMFSFYDATK-PIYTS--RRNLPPSK-IDDSKIVDSII-SHGSFITSSFIEHSVVGIRSRI 264 (360)
Q Consensus 190 digtp~~~~~a~~~~l~~~~~~~~~~~~~-~v~~~--~~~~~~~~-~~~~~i~~~~i-~~~~~i~~~~i~~~~ig~~~~i 264 (360)
-+-+..+++.+..++.......- ....+ ..... ..++|... +.. . ...+ +-...+. ..+-+|-.++.+
T Consensus 358 PVK~~~dll~~rsdly~l~~~~l-~~~~~~~~~~~p~IeL~~~f~~v~~--f-~~rf~~iPsl~~---~d~LtV~Gdv~f 430 (469)
T PLN02474 358 PVKATSDLLLVQSDLYTLVDGFV-IRNKARTNPSNPSIELGPEFKKVAN--F-LSRFKSIPSIVE---LDSLKVSGDVWF 430 (469)
T ss_pred CCCCCCCHHHHHHHHHHhccCeE-EecCcccCCCCCcEEECcccccHHh--H-HHhcCCCCCccc---CCeEEEeeeeEE
Confidence 67777777777766544321100 00011 01111 11222110 000 0 0000 1111111 114455567888
Q ss_pred CCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCC
Q 018109 265 NANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKN 314 (360)
Q Consensus 265 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~ 314 (360)
|.++++...|++-++ +|.+..|-+|+.+++++|..+
T Consensus 431 G~~v~l~G~v~i~~~--------------~~~~~~ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 431 GSGIVLKGKVTITAK--------------SGVKLEIPDGAVLENKDINGP 466 (469)
T ss_pred CCCcEEEEEEEEEcC--------------CCCeeecCCCcEecceeeccc
Confidence 888888888888763 223367888888877776554
No 233
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=87.04 E-value=5 Score=35.35 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=32.4
Q ss_pred EEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe--CCceeecCCHHHHHHHHHHh
Q 018109 143 VYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF--NDYWEDIGTIRSFFEANLAL 204 (360)
Q Consensus 143 Iyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~--~g~w~digtp~~~~~a~~~~ 204 (360)
..+|+++.+..+.+...... .-+..+++..++...++ ++.|.|++||++|.++.+.+
T Consensus 133 ~al~~~~~~~~l~~~l~~~~-----~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~ 191 (196)
T PRK00560 133 ISLWHQSLLNALIYALKTQN-----YRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQIL 191 (196)
T ss_pred EEEEcHHHHHHHHHHHHhCC-----ccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHH
Confidence 36788888876532211111 11233333334444443 35689999999998876544
No 234
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=87.03 E-value=0.63 Score=40.75 Aligned_cols=71 Identities=14% Similarity=-0.016 Sum_probs=45.5
Q ss_pred CCcEEEeeCcccCCCCCC------------ccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHH
Q 018109 5 TGNSQVLAATQTPGEAGK------------RWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNH 70 (360)
Q Consensus 5 ~g~~~i~~~~~~~~~~~~------------~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h 70 (360)
.++++++++.++..+..+ .+-.|...++..+...+.. +++|++++||. +....+..+++.|
T Consensus 40 ~~i~~I~Vv~~~~~~~~~~~l~~~~~~~~~~~g~G~~~~l~~al~~~~~-----~~~~lv~~~D~P~i~~~~i~~li~~~ 114 (183)
T TIGR00454 40 SKVNNIIIATSPHTPKTEEYINSAYKDYKNASGKGYIEDLNECIGELYF-----SEPFLVVSSDLINLRSKIIDSIVDYY 114 (183)
T ss_pred CCCCEEEEEeCCCHHHHHHHHhhcCcEEEecCCCCHHHHHHHHhhcccC-----CCCEEEEeCCcCcCCHHHHHHHHHHH
Confidence 356777777664322111 1224777788888765432 47999999998 3455589999988
Q ss_pred HHcCCcEEEE
Q 018109 71 RQSGADITIS 80 (360)
Q Consensus 71 ~~~~a~~tll 80 (360)
.+.+.....+
T Consensus 115 ~~~~~~~~~~ 124 (183)
T TIGR00454 115 YCIKAPALAV 124 (183)
T ss_pred HhcCCCceEE
Confidence 7766544333
No 235
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=86.71 E-value=1.4 Score=43.76 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=38.5
Q ss_pred cCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCc
Q 018109 260 IRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI 329 (360)
Q Consensus 260 ~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~ 329 (360)
..+.+.+.+.|-++++-++ +.+|+++.|.+|+++.++.||.+|+|.+....
T Consensus 272 ~~~~~~~~~~VinSil~~~-------------------~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 272 TPSDSEASSCVINSILEGG-------------------VSVGPGSVIEHSHLGGPWSIGSNCIISGVDIN 322 (414)
T ss_pred cccccCCCeeEEEeEecCC-------------------ceECCCCEEEeeecCCCCEECCCCEEECCccc
Confidence 3456677777777777665 78888888888888888888888888776443
No 236
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.58 E-value=2.5 Score=36.14 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=35.8
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCc
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGAD 76 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~-~~dl~~ll~~h~~~~a~ 76 (360)
..|++++++.+..++.. ..+.++++.||+ +. ...++.+++.+.+.++.
T Consensus 73 ~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 73 EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 36999999999988852 137899999998 44 44478888887654443
No 237
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=81.91 E-value=2.4 Score=36.59 Aligned_cols=47 Identities=19% Similarity=0.107 Sum_probs=36.1
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCc
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 76 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~ 76 (360)
+..|++++|+.+...++ .+.++++.||. +.+.+ ++.+++.+.+.++.
T Consensus 71 ~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 71 DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 45799999999998885 37899999998 66666 57787776544443
No 238
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=80.80 E-value=14 Score=33.21 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=86.0
Q ss_pred HHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCceEEEE
Q 018109 30 DAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 107 (360)
Q Consensus 30 ~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ 107 (360)
+++.++.+.++. ..+..+++.+=. +...++++.++.|.+.+.+-.+.+.+.+.. .|--+.. .+|.+..+.
T Consensus 84 ~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~---p~k~f~~-~~~~~~~~~ 155 (228)
T COG1083 84 DAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHH---PYKAFSL-NNGEVKPVN 155 (228)
T ss_pred HHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccc---hHHHHHh-cCCceeecc
Confidence 455666666653 233356665554 566779999999999888877777776642 2322222 347888888
Q ss_pred ecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccccccCceEEEEe-CC
Q 018109 108 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLF-ND 186 (360)
Q Consensus 108 ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~i~~~~I~~~~~-~g 186 (360)
|.|+.... ...+. ..+..++.+|+++.+.|.+ +. .+ +. .....|.+ +.
T Consensus 156 ~~~~~~~r-rQ~Lp-------------k~Y~~NgaiYi~~~~~l~e---~~-----~~---f~------~~~~~y~m~~~ 204 (228)
T COG1083 156 EDPDFETR-RQDLP-------------KAYRENGAIYINKKDALLE---ND-----CF---FI------PNTILYEMPED 204 (228)
T ss_pred cCCccccc-cccch-------------hhhhhcCcEEEehHHHHhh---cC-----ce---ec------CCceEEEcCcc
Confidence 77754321 11111 2356688999999998743 21 11 11 13344544 34
Q ss_pred ceeecCCHHHHHHHHHHhhcC
Q 018109 187 YWEDIGTIRSFFEANLALTAH 207 (360)
Q Consensus 187 ~w~digtp~~~~~a~~~~l~~ 207 (360)
...||.+..++..++..+..+
T Consensus 205 ~~~DID~~~Dl~iae~l~~~~ 225 (228)
T COG1083 205 ESIDIDTELDLEIAENLIFLK 225 (228)
T ss_pred cccccccHHhHHHHHHHhhhh
Confidence 689999999999988776543
No 239
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=80.60 E-value=12 Score=33.20 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCCcEEEeeCcccC-CC--------------CCCccccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce--eeecCHHHH
Q 018109 4 LTGNSQVLAATQTP-GE--------------AGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDF 66 (360)
Q Consensus 4 ~~g~~~i~~~~~~~-~~--------------~~~~~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~--i~~~dl~~l 66 (360)
++++++++.+.+|. .+ ...+|-.|-+.+++.+...... ..+-.+++.||. +...++..+
T Consensus 43 ~a~~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl 118 (199)
T COG2068 43 SAGLDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRL 118 (199)
T ss_pred hcCCCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHH
Confidence 46788888888884 11 1123457999999999988874 124899999999 556668899
Q ss_pred HHHHHHc
Q 018109 67 VQNHRQS 73 (360)
Q Consensus 67 l~~h~~~ 73 (360)
++.+++.
T Consensus 119 ~~~~~~~ 125 (199)
T COG2068 119 IAAFRAR 125 (199)
T ss_pred HHhcccc
Confidence 9887776
No 240
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=78.68 E-value=4.2 Score=34.95 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=36.0
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCcEEE
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITI 79 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~-~dl~~ll~~h~~~~a~~tl 79 (360)
..|++++++.+.....+ .+.|+++.||. +.+ ..++.+++.+.+.+..+++
T Consensus 73 ~~g~~~si~~~l~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 124 (188)
T TIGR03310 73 AEGQSSSIKLGLELPVQ-----SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVV 124 (188)
T ss_pred hcCHHHHHHHHhcCCCC-----CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEE
Confidence 36999999998862221 47899999999 444 4578999888776665443
No 241
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=78.65 E-value=12 Score=33.07 Aligned_cols=162 Identities=8% Similarity=0.072 Sum_probs=90.7
Q ss_pred CCCCcEEEeeCcccCCCCCC----cc-----------ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCHHHHH
Q 018109 3 QLTGNSQVLAATQTPGEAGK----RW-----------FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFV 67 (360)
Q Consensus 3 ~~~g~~~i~~~~~~~~~~~~----~~-----------~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl~~ll 67 (360)
+.+|+.+|++++||+.|+.. .| --....++++|+++++ +.-++.+|.+..-++
T Consensus 42 ~e~gI~dI~IVvGYlkE~FeYLkdKy~vtLvyN~kY~~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi---- 109 (231)
T COG4750 42 REAGIDDITIVVGYLKEQFEYLKDKYDVTLVYNPKYREYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI---- 109 (231)
T ss_pred HHCCCceEEEEeeehHHHHHHHHHhcCeEEEeCchHHhhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh----
Confidence 46899999999999877321 00 0266778899999885 446778887655443
Q ss_pred HHHHHcC--CcEEEEEeecCCCCCCcccEEEECCCCceEEEEecCCccccccccccccccccccccccccCceeeeeEEE
Q 018109 68 QNHRQSG--ADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 145 (360)
Q Consensus 68 ~~h~~~~--a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyi 145 (360)
|+.+. +--.-+.++.. ...| .+..+.+++|+++.=.- ...+..+|+-.
T Consensus 110 --f~~~~~~S~Yfav~~~~~---tnEw-~l~~~~~~ki~~v~Igg------------------------~~~~imsG~sf 159 (231)
T COG4750 110 --FLTKESHSKYFAVYRSGK---TNEW-LLIYNSDGKITRVDIGG------------------------LNGYIMSGISF 159 (231)
T ss_pred --hhcCcccceEEEEEecCC---Ccee-EEEEcCCCcEEEEEecC------------------------cccceEeeeee
Confidence 22222 11122222221 2234 34566789999885332 13577889999
Q ss_pred EeHHHHHH---HHHhhCC--CCcch-hhcccccccccCceEEEEeC-CceeecCCHHHHHHHHHHhhc
Q 018109 146 FKKEILLN---LLRWRFP--TANDF-GSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 146 fs~~vl~~---ll~~~~~--~~~~~-~~~~l~~~i~~~~I~~~~~~-g~w~digtp~~~~~a~~~~l~ 206 (360)
|+.+.-+. +++.... ....+ -+.+..+-++...++.-.++ +-.+.+.+.++|.+....++.
T Consensus 160 f~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l~ 227 (231)
T COG4750 160 FDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFLS 227 (231)
T ss_pred ecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhcC
Confidence 98775443 3333211 00011 11222233334444444443 456788889988887666543
No 242
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=77.97 E-value=6.3 Score=34.21 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=34.4
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcC
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSG 74 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~ 74 (360)
|..|.+++++.+...+.. ...+.++++.||. +.+.+ +..|++.+++..
T Consensus 76 ~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 76 ACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred hhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 345889999999987632 1247899999999 66655 678887665433
No 243
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=75.80 E-value=5.1 Score=34.33 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=32.7
Q ss_pred cccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHH
Q 018109 24 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 70 (360)
Q Consensus 24 ~~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h 70 (360)
+..|+.++|+.+...++ .+.++++.||. +.+.+ ++.+++.+
T Consensus 67 ~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 67 PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 45699999999998875 38999999999 55554 67888766
No 244
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=61.14 E-value=59 Score=31.68 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=27.3
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHH
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 69 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~ 69 (360)
.|...++..+..... .+.++|+.||+ +.+.+ +..|++.
T Consensus 244 ~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 244 IGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 577788888766544 36899999999 66665 4666654
No 245
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=59.84 E-value=81 Score=29.01 Aligned_cols=136 Identities=13% Similarity=0.035 Sum_probs=72.6
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCc---eeeecC-HHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGD---HLYRMD-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 102 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD---~i~~~d-l~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 102 (360)
+..++++.+...++. +..+|+.+| -+...+ +..+++..++.++ .++..++.+. +...++++.
T Consensus 102 ~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~i~~~~~~dt------ik~v~~~~~ 167 (252)
T PLN02728 102 ERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHGA--AVLGVPVKAT------IKEANSDSF 167 (252)
T ss_pred chHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--EEEeecchhh------EEEecCCCc
Confidence 346778888887752 345677777 355555 5888887777664 4555544431 122334454
Q ss_pred eEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHhhCCCCcchhhcccccc---c--ccC
Q 018109 103 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPAS---A--NEQ 177 (360)
Q Consensus 103 V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~~~~~~~~~~~~~l~~~---i--~~~ 177 (360)
+.. .+++... +..-+| -.|+.+.|....+..... +..+++. + .+.
T Consensus 168 v~~---t~~R~~l--------~~~QTP--------------Q~F~~~~l~~a~~~~~~~-----~~~~TDd~~~~~~~g~ 217 (252)
T PLN02728 168 VVK---TLDRKRL--------WEMQTP--------------QVIKPELLRRGFELVERE-----GLEVTDDVSIVEALKH 217 (252)
T ss_pred eee---ccChHHe--------EEEeCC--------------ccchHHHHHHHHHHHHhc-----CCCcCcHHHHHHHcCC
Confidence 433 3333220 000112 245555555544432111 1122321 1 256
Q ss_pred ceEEEEeCCceeecCCHHHHHHHHHHhhc
Q 018109 178 FLKAYLFNDYWEDIGTIRSFFEANLALTA 206 (360)
Q Consensus 178 ~I~~~~~~g~w~digtp~~~~~a~~~~l~ 206 (360)
+|...+=+..-+-|.+|+|+..+...+..
T Consensus 218 ~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 218 PVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred ceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 66665555567889999999988765543
No 246
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=58.96 E-value=19 Score=31.74 Aligned_cols=42 Identities=26% Similarity=0.190 Sum_probs=33.2
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHH
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQ 72 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~ 72 (360)
..|..++++.+...++. +.++|+.||. +...+ +..+++.++.
T Consensus 77 ~~G~~~si~~~l~~~~~------~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 77 SQGPLVAFAQGLPQIKT------EWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCChHHHHHHHHHhCCC------CcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 36999999999998863 7899999999 55655 5778876543
No 247
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=56.22 E-value=1.2e+02 Score=27.09 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=23.8
Q ss_pred CCeEEEEcCce-eeecC-HHHHHHHHHHcCCcEE
Q 018109 47 IEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 78 (360)
Q Consensus 47 ~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~~t 78 (360)
.+.++++.||. +.+.+ ++++++.+++.+++.+
T Consensus 88 ~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 88 ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 36899999999 55555 7899988877665443
No 248
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=55.32 E-value=22 Score=39.14 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=21.0
Q ss_pred eEECCC-CeEeeeEecCCCEECCCcEEecC
Q 018109 298 VGIGEN-TKIKECIIDKNARIGKNVIIANS 326 (360)
Q Consensus 298 ~~ig~~-~~i~~~~i~~~~~ig~~~~~~~~ 326 (360)
+.++++ ++|++|.|+.+.+||.+++|.+.
T Consensus 343 ~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 343 LTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred cccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 677766 44777888888888888777654
No 249
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=53.32 E-value=63 Score=25.94 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=39.0
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCcEEEEEe
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCL 82 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~a~~tll~~ 82 (360)
.|-+.++..+..... .+.++++..|.+...+ +..+++.+.+.+.++.+...
T Consensus 64 ~g~~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 64 LGFSAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp SHHHHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 388888888888876 3799999999999888 68999998887776655443
No 250
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=51.99 E-value=0.8 Score=42.67 Aligned_cols=19 Identities=0% Similarity=-0.076 Sum_probs=10.7
Q ss_pred ceeeeeEEEEeHHHHHHHH
Q 018109 137 YIASMGVYLFKKEILLNLL 155 (360)
Q Consensus 137 ~~~~~GIyifs~~vl~~ll 155 (360)
...++..++|+-+.+.+++
T Consensus 222 ~~~n~~~~~~~l~~l~~~~ 240 (266)
T cd04180 222 FLFNTNNLINFLVEFKDRV 240 (266)
T ss_pred ccceEEEEEEEHHHHHHHH
Confidence 3455666666666555544
No 251
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=46.89 E-value=30 Score=33.74 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=33.9
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCc
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 76 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~~a~ 76 (360)
.|..++|+.+...++ .+.++|+.||. +...+ +..+++.+++.+++
T Consensus 78 ~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 78 QGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred CChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 588899999988775 36799999998 55655 57788776555544
No 252
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=39.82 E-value=1.2e+02 Score=23.35 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred ceEECCCCEEcceEEeeeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEEC
Q 018109 239 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 318 (360)
Q Consensus 239 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig 318 (360)
.++|++++.+.+ +........+... +..++...+. ..|+.++.+...+-.+++.|.
T Consensus 2 ~~~I~~~~~i~G----~i~~~~~v~i~G~--v~G~i~~~g~------------------v~i~~~~~v~G~i~~~~~~i~ 57 (101)
T PF04519_consen 2 TTIIGKGTKIEG----DISSDGDVRIDGR--VEGNIKAEGK------------------VKIGGNGEVKGDIKADDVIIS 57 (101)
T ss_pred cEEECCCCEEEE----EEEECcEEEEEEE--EEEEEEEceE------------------EEEcCCCEEEEEEEEeEEEEc
Q ss_pred CCcEEecCCCcccccccCCceEEeCCeEEEcCCcEeCCCccC
Q 018109 319 KNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 360 (360)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 360 (360)
-. +.......+...+...+.+...+.. +.-.|-+|+.+
T Consensus 58 G~--v~G~v~a~~~v~i~~~~~v~G~i~~--~~l~v~~ga~i 95 (101)
T PF04519_consen 58 GS--VDGNVEASGKVEIYGTARVEGDITA--GKLEVEGGASI 95 (101)
T ss_pred CE--EeEEEEECceEEEeCCEEEEEEEEE--CEEEEeCCCEE
No 253
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=39.48 E-value=2.4e+02 Score=26.76 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=60.1
Q ss_pred CCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCC--ceEEEEecCCccccccccccccc
Q 018109 47 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTV 124 (360)
Q Consensus 47 ~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g--~V~~~~ekp~~~~~~~~~i~~~~ 124 (360)
-+.+.+.+.|.+...-=-.++.+|.++++++++=+.+-..+ -.+-|.+.. .+| +|+++.+-|+....... +
T Consensus 137 ~~yi~v~nvDNL~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~-dek~G~l~~-~~g~~~vvEyse~p~e~~~~~~--~--- 209 (300)
T cd00897 137 KEYLFVSNIDNLGATVDLRILNHMVDNKAEYIMEVTDKTRA-DVKGGTLIQ-YEGKLRLLEIAQVPKEHVDEFK--S--- 209 (300)
T ss_pred CEEEEEEecccccccCCHHHHHHHHhcCCceEEEEeecCCC-CCcccEEEE-ECCEEEEEEeccCCHHHHHhhc--C---
Confidence 48999999999754322458888889999888744443332 134565553 245 57777776654321000 0
Q ss_pred cccccccccccCceeeeeEEEEeHHHHHHHHHh
Q 018109 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 157 (360)
Q Consensus 125 ~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~ 157 (360)
...-.+.+++.++|+-+.|.++++.
T Consensus 210 --------~~~~~~~nt~n~~~~l~~L~~~~~~ 234 (300)
T cd00897 210 --------IKKFKIFNTNNLWVNLKAVKRVVEE 234 (300)
T ss_pred --------cccceEEEEeEEEEEHHHHHHHHHh
Confidence 0013578999999999999887644
No 254
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=38.51 E-value=94 Score=24.16 Aligned_cols=41 Identities=27% Similarity=0.157 Sum_probs=31.3
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecCH-HHHHHHHHH
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHRQ 72 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~dl-~~ll~~h~~ 72 (360)
.|.+.++..+....+ .+.++++.+|.++..++ ..++..+..
T Consensus 63 ~g~~~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~~~ 104 (156)
T cd00761 63 QGLAAARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAELLA 104 (156)
T ss_pred CChHHHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHHhc
Confidence 588999998888875 48999999999988885 455344443
No 255
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=38.38 E-value=58 Score=28.69 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=32.6
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecCH-HHHHHHHHHcC
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDY-MDFVQNHRQSG 74 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~dl-~~ll~~h~~~~ 74 (360)
|.-.+|+.+...... +.++++.||+ +...++ ..|+....+.+
T Consensus 73 GPL~Gi~~al~~~~~------~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 73 GPLAGILAALRHFGT------EWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCHHHHHHHHHhCCC------CeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 999999999988863 8999999999 666664 66666555444
No 256
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=38.08 E-value=2.4e+02 Score=23.66 Aligned_cols=69 Identities=9% Similarity=-0.031 Sum_probs=39.0
Q ss_pred EEeeeEEecC-eEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECCCcEEecCCCcc
Q 018109 252 FIEHSVVGIR-SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQ 330 (360)
Q Consensus 252 ~i~~~~ig~~-~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~~~~~~~~~~~~ 330 (360)
.+...+..+. ..|++..+|+..+.... .+=+++...+....+.+.|.+..++.. +...
T Consensus 47 ~~~G~v~s~~~iiv~~~g~V~gei~a~~--------------------~iv~G~v~Gni~~a~~Vei~~~g~v~G-dI~~ 105 (146)
T COG1664 47 TFEGDVHSDGGIVVGESGRVEGEIEAEH--------------------LIVEGKVEGNILAAERVELYPGGRVIG-DITT 105 (146)
T ss_pred EEEEEEEeCCCEEECCccEEEEEEEeCE--------------------EEEeeEEEEEEEEeeEEEEcCCcEEee-eecc
Confidence 4555555555 88888888887766653 344455555555666666666664432 2233
Q ss_pred cccccCCceEE
Q 018109 331 EADRSAEGFYI 341 (360)
Q Consensus 331 ~~~~~~~~~~i 341 (360)
+...+.+|+.+
T Consensus 106 ~~i~v~~Ga~f 116 (146)
T COG1664 106 KEITVEEGAIF 116 (146)
T ss_pred cEEEEccCCEE
Confidence 33345555544
No 257
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=37.67 E-value=72 Score=27.65 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=39.0
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCcEEEEEe
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCL 82 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~a~~tll~~ 82 (360)
.|-+.|+..+..... .+.++++.+|...+.+ +.++++...+.+.++++...
T Consensus 68 ~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 68 RGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred CCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence 588999998888776 3899999999987776 67888776666666655443
No 258
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=35.95 E-value=71 Score=28.60 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=36.9
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCcEEEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 80 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~a~~tll 80 (360)
.|-+.|+..+....+ .+.++++.+|...+.+ +.++++...+.+++++..
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 377788887776654 3789999999987776 578888777777766544
No 259
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=32.95 E-value=1.3e+02 Score=26.02 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=36.1
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCcEEEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 80 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~a~~tll 80 (360)
.|-+.|+..+..... .+.++++.+|...+.+ +..+++...+.+.+++..
T Consensus 64 ~G~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 64 RGLGSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred CChHHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 488888888887765 3788899999987766 678888766666655443
No 260
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=30.14 E-value=2.7e+02 Score=26.65 Aligned_cols=121 Identities=16% Similarity=0.227 Sum_probs=66.6
Q ss_pred cccccHHHHHHHhH--hhcCCCCCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCC
Q 018109 24 WFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 100 (360)
Q Consensus 24 ~~lGTa~al~~a~~--~i~~~~~~~~~~fLVv~gD~i-~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 100 (360)
.|-|.|+-...... .++......-+.+.+.+.|.+ ...-=-.++-++.++++++++-+.+...+ ..+-|.+... +
T Consensus 132 ~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~-~ 209 (323)
T cd04193 132 APNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLV-D 209 (323)
T ss_pred CCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEE-C
Confidence 35688876554432 222111123479999999994 43333567788888999988866654432 2345655542 4
Q ss_pred C--ceEEEEecCCccccccccccccccccccccccccCceeeeeEEEEeHHHHHHHHHh
Q 018109 101 G--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 157 (360)
Q Consensus 101 g--~V~~~~ekp~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~ 157 (360)
| +++++.|-|....... +. ... . .-+..+..+.+|+-+.|.++++.
T Consensus 210 g~~~vvEysel~~~~~~~~---~~-----~g~-l--~f~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 210 GKPQVVEYSEISDELAEKR---DA-----DGE-L--QYNAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred CeEEEEEeecCCHHHHhcc---Cc-----CCc-E--ecccchHhhheeCHHHHHHHHhh
Confidence 5 4566655554321100 00 000 0 01234556788999988887543
No 261
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=29.99 E-value=1.1e+02 Score=27.11 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=37.4
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCcEEEEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 81 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~a~~tll~ 81 (360)
.|-+.|+..+....+ .+.++++.+|.....+ +.++++.+.+.+.++.++.
T Consensus 70 ~G~~~a~n~g~~~a~------gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 70 RTKPKACNYALAFAR------GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred CchHHHHHHHHHhcC------CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 367888888887654 4899999999998888 5788888876545555443
No 262
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=29.35 E-value=1.4e+02 Score=24.81 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=37.3
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCcEEEEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 81 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~a~~tll~ 81 (360)
.|.+.|+..+..... .+.++++.+|.....+ +.+++....+.+.++.+..
T Consensus 65 ~G~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 65 FGKGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred CCccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 478888888887765 3889999999977776 6888887566666655443
No 263
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=25.29 E-value=1.5e+02 Score=29.60 Aligned_cols=51 Identities=29% Similarity=0.389 Sum_probs=34.8
Q ss_pred eeEEecCeEECCCCEEeceEEECCcccchhHHHHhhhhCCCcceEECCCCeEeeeEecCCCEECC
Q 018109 255 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 319 (360)
Q Consensus 255 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~~i~~~~~ig~ 319 (360)
+-+|..++.+|.++.++..+++-.+ +|. .--|-+|+.+++++|..+++|-.
T Consensus 447 hLtVsGdV~FGknV~LkGtViIia~-------------~~~-~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 447 HLTVSGDVWFGKNVSLKGTVIIIAN-------------EGD-RIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred eEEEeccEEeccceEEeeEEEEEec-------------CCC-eeecCCCCeeecceEeccccccc
Confidence 4555567888888888877666442 111 15577888888888888887753
No 264
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=25.24 E-value=1.3e+02 Score=25.67 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=28.0
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHHHc
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQS 73 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~~~ 73 (360)
.|...++..+...... ...+.++|+.||+ +.+.+ ++.|++.+...
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 4666666655443311 0147999999999 66666 57777765433
No 265
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=24.06 E-value=5.4e+02 Score=23.29 Aligned_cols=51 Identities=18% Similarity=-0.009 Sum_probs=35.6
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCcEEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 79 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~a~~tl 79 (360)
+|-|+|...+..+..+ ...+.++++..|.+...+ +.++++...+.+..+.+
T Consensus 56 ~G~a~a~N~Gi~~a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~ 107 (281)
T TIGR01556 56 QGIAGAQNQGLDASFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACA 107 (281)
T ss_pred cchHHHHHHHHHHHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEE
Confidence 4888888888776632 124899999999988777 57788776654423333
No 266
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=23.64 E-value=1.8e+02 Score=24.19 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=34.9
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCcEEEE
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 80 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~a~~tll 80 (360)
.|.+.|+..+..... .+.++++.+|...+.+ +.++++. .+.+.++++.
T Consensus 66 ~G~~~a~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g 114 (181)
T cd04187 66 FGQQAALLAGLDHAR------GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYG 114 (181)
T ss_pred CCcHHHHHHHHHhcC------CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEE
Confidence 488899988877665 3899999999987776 5777776 4445554443
No 267
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=23.00 E-value=2.8e+02 Score=27.69 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=55.2
Q ss_pred CCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcccEEEECCCCc--eEEEEecCCccccccccccccc
Q 018109 47 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTV 124 (360)
Q Consensus 47 ~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~--V~~~~ekp~~~~~~~~~i~~~~ 124 (360)
-+.+.|.+.|.+...-=-.++.++.++++++.+-+.+...+ -.+-|++.. .+|+ |+++.+-|+.....
T Consensus 192 ~eyifv~nvDNL~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~-dek~Gvl~~-~~G~~~vvEysqip~~~~~~-------- 261 (420)
T PF01704_consen 192 IEYIFVSNVDNLGAVVDPVFLGYMIEKNADFGMEVVPKTSP-DEKGGVLCR-YDGKLQVVEYSQIPKEHMAE-------- 261 (420)
T ss_dssp --EEEEEETTBTT-TT-HHHHHHHHHTT-SEEEEEEE-CST-TTSSEEEEE-ETTEEEEEEGGGS-HHGHHH--------
T ss_pred CeEEEEEecCCcccccCHHHHHHHHhccchhheeeeecCCC-CCceeEEEE-eCCccEEEEeccCCHHHHHh--------
Confidence 48999999999665433458888888999988776665432 134566554 2454 44444444321100
Q ss_pred cccccccccccCceeeeeEEEEeHHHHHHHHHh
Q 018109 125 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 157 (360)
Q Consensus 125 ~~~~~~~~~~~~~~~~~GIyifs~~vl~~ll~~ 157 (360)
+-+ .....+.+++--+|+-+.+.++++.
T Consensus 262 ~~~-----~~~~~~FntnNi~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 262 FKD-----IKGFLLFNTNNIWFSLDFLKRLLER 289 (420)
T ss_dssp HTS-----TTTSBEEEEEEEEEEHHHHHHHHHT
T ss_pred hhc-----cccceEEEeceeeEEHHHHHHHHHh
Confidence 000 0113466888889999999988765
No 268
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=22.62 E-value=2e+02 Score=22.92 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=32.2
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcC
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 74 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~ 74 (360)
.|-+.++..+..... .+.++++.+|.+...+ +.+++..+.+..
T Consensus 64 ~g~~~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 107 (180)
T cd06423 64 GGKAGALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFADP 107 (180)
T ss_pred CCchHHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhccCC
Confidence 478888888887765 4899999999988777 566656555443
No 269
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=22.34 E-value=95 Score=30.08 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=31.6
Q ss_pred ccccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-eeecC-HHHHHHHHH
Q 018109 25 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 71 (360)
Q Consensus 25 ~lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~~~d-l~~ll~~h~ 71 (360)
..|...+|+.+...... +.++++.||+ +.+.+ +..|++.++
T Consensus 229 ~~GPlagI~aaL~~~~~------~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 229 SVGPISGILTALQSYPG------VNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred CCChHHHHHHHHHhCCC------CCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 46999999999987642 6889999999 66665 577777653
No 270
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.65 E-value=2.8e+02 Score=22.11 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=33.8
Q ss_pred cccHHHHHHHhHhhcCCCCCCCCeEEEEcCceeeecC-HHHHHHHHHHcCC
Q 018109 26 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 75 (360)
Q Consensus 26 lGTa~al~~a~~~i~~~~~~~~~~fLVv~gD~i~~~d-l~~ll~~h~~~~a 75 (360)
.|.+.|+..+....+ .+-++++..|.+...+ +..+++.+.+...
T Consensus 60 ~g~~~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 104 (166)
T cd04186 60 LGFGAGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQDPD 104 (166)
T ss_pred cChHHHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhCCC
Confidence 488888888887775 4889999999988777 5777776665543
No 271
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=21.19 E-value=2.5e+02 Score=22.86 Aligned_cols=33 Identities=24% Similarity=0.607 Sum_probs=27.2
Q ss_pred CCeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEEee
Q 018109 47 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 83 (360)
Q Consensus 47 ~~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~~~ 83 (360)
.+.+++++||. ||.++++.-++++..+.++..+
T Consensus 100 ~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 100 IDTIVLVSGDS----DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCEEEEEECCc----cHHHHHHHHHHcCCEEEEEccC
Confidence 47999999988 9999999999998876665544
No 272
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=20.97 E-value=84 Score=27.12 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=30.9
Q ss_pred ccHHHHHHHhHhhcCCCCCCCCeEEEEcCce-ee-ecCHHHHHHHHH
Q 018109 27 GTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHR 71 (360)
Q Consensus 27 GTa~al~~a~~~i~~~~~~~~~~fLVv~gD~-i~-~~dl~~ll~~h~ 71 (360)
|.+.+++.+..++.. ..+.++++.||. +. ...++++++.++
T Consensus 75 G~~~si~~al~~~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 75 GLNNALNAALAEARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CHHHHHHHHHHHhhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 899999999887752 125799999999 44 445788888664
No 273
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=20.54 E-value=2.2e+02 Score=22.88 Aligned_cols=30 Identities=23% Similarity=0.592 Sum_probs=21.6
Q ss_pred CeEEEEcCceeeecCHHHHHHHHHHcCCcEEEEE
Q 018109 48 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 81 (360)
Q Consensus 48 ~~fLVv~gD~i~~~dl~~ll~~h~~~~a~~tll~ 81 (360)
+.+++++|| .||.++++.-++++..+.++.
T Consensus 97 d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred CEEEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 899999999 789999999999998766666
Done!