Query 018110
Match_columns 360
No_of_seqs 455 out of 1935
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 3.2E-18 6.9E-23 167.4 11.3 76 140-216 205-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 2.2E-14 4.7E-19 100.6 1.2 44 165-209 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.2 5.9E-12 1.3E-16 118.5 4.7 77 139-215 147-229 (238)
4 COG5243 HRD1 HRD ubiquitin lig 99.2 1.9E-11 4.1E-16 119.3 7.0 52 162-214 285-346 (491)
5 PF12678 zf-rbx1: RING-H2 zinc 99.2 8.8E-12 1.9E-16 97.0 2.9 45 164-209 19-73 (73)
6 COG5540 RING-finger-containing 99.2 1.6E-11 3.5E-16 117.2 3.5 51 163-214 322-373 (374)
7 cd00162 RING RING-finger (Real 98.9 1.7E-09 3.7E-14 74.0 3.5 44 166-212 1-45 (45)
8 PF12861 zf-Apc11: Anaphase-pr 98.9 1.2E-09 2.6E-14 86.9 2.9 52 163-214 20-83 (85)
9 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.1E-09 4.6E-14 77.3 1.9 47 164-214 2-49 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 98.7 4.8E-09 1E-13 71.7 2.0 39 167-208 1-39 (39)
11 PHA02926 zinc finger-like prot 98.7 3.9E-09 8.5E-14 97.5 2.0 54 162-215 168-232 (242)
12 KOG0823 Predicted E3 ubiquitin 98.7 1.1E-08 2.3E-13 95.0 4.8 53 163-219 46-101 (230)
13 PLN03208 E3 ubiquitin-protein 98.7 1.5E-08 3.3E-13 92.3 3.9 49 163-215 17-81 (193)
14 KOG0802 E3 ubiquitin ligase [P 98.7 6.8E-09 1.5E-13 108.9 1.5 51 163-214 290-342 (543)
15 KOG0317 Predicted E3 ubiquitin 98.7 9.7E-09 2.1E-13 97.9 2.4 48 164-215 239-286 (293)
16 PF14634 zf-RING_5: zinc-RING 98.6 3.7E-08 8E-13 69.1 2.8 44 166-210 1-44 (44)
17 COG5194 APC11 Component of SCF 98.6 2.8E-08 6.1E-13 77.7 2.2 51 165-215 21-83 (88)
18 smart00184 RING Ring finger. E 98.5 6.6E-08 1.4E-12 63.7 2.7 38 167-208 1-39 (39)
19 PF00097 zf-C3HC4: Zinc finger 98.5 4.4E-08 9.5E-13 67.2 1.6 39 167-208 1-41 (41)
20 KOG0320 Predicted E3 ubiquitin 98.5 5.8E-08 1.3E-12 86.9 1.8 49 164-214 131-179 (187)
21 KOG1493 Anaphase-promoting com 98.4 5.4E-08 1.2E-12 75.5 -0.9 52 163-214 19-82 (84)
22 smart00504 Ubox Modified RING 98.4 4E-07 8.8E-12 67.8 3.8 45 165-213 2-46 (63)
23 PF15227 zf-C3HC4_4: zinc fing 98.3 2.6E-07 5.6E-12 64.4 2.4 38 167-208 1-42 (42)
24 COG5219 Uncharacterized conser 98.2 1.8E-07 3.8E-12 100.4 -0.3 63 151-213 1456-1523(1525)
25 KOG0828 Predicted E3 ubiquitin 98.2 1.1E-06 2.3E-11 89.2 4.6 51 163-214 570-635 (636)
26 TIGR00599 rad18 DNA repair pro 98.2 8.9E-07 1.9E-11 89.3 3.5 50 161-214 23-72 (397)
27 KOG2930 SCF ubiquitin ligase, 98.2 5.8E-07 1.3E-11 73.6 0.9 52 163-214 45-109 (114)
28 smart00744 RINGv The RING-vari 98.1 2.1E-06 4.5E-11 61.8 2.4 42 166-209 1-49 (49)
29 COG5574 PEX10 RING-finger-cont 98.0 3.1E-06 6.8E-11 80.1 2.2 49 163-215 214-264 (271)
30 PF11793 FANCL_C: FANCL C-term 98.0 1.7E-06 3.8E-11 66.8 0.3 51 164-214 2-67 (70)
31 PF13445 zf-RING_UBOX: RING-ty 97.9 3.8E-06 8.3E-11 58.9 1.7 34 167-202 1-35 (43)
32 KOG1734 Predicted RING-contain 97.9 3.8E-06 8.2E-11 79.7 0.4 51 163-214 223-282 (328)
33 KOG2164 Predicted E3 ubiquitin 97.8 9.9E-06 2.1E-10 82.9 2.8 47 164-214 186-237 (513)
34 KOG0804 Cytoplasmic Zn-finger 97.8 1.1E-05 2.3E-10 81.3 2.1 51 160-213 171-222 (493)
35 TIGR00570 cdk7 CDK-activating 97.7 2.3E-05 5E-10 76.5 3.8 52 164-216 3-57 (309)
36 KOG0827 Predicted E3 ubiquitin 97.7 1.3E-05 2.8E-10 79.4 1.7 48 165-212 5-55 (465)
37 KOG2177 Predicted E3 ubiquitin 97.7 1.5E-05 3.3E-10 74.0 1.5 43 163-209 12-54 (386)
38 KOG0287 Postreplication repair 97.6 1.6E-05 3.4E-10 77.7 1.0 47 164-214 23-69 (442)
39 COG5432 RAD18 RING-finger-cont 97.5 4E-05 8.6E-10 73.6 2.1 48 163-214 24-71 (391)
40 KOG1039 Predicted E3 ubiquitin 97.5 4.8E-05 1E-09 75.5 2.7 54 163-216 160-224 (344)
41 PF04564 U-box: U-box domain; 97.5 5.4E-05 1.2E-09 58.7 2.0 48 163-214 3-51 (73)
42 KOG4172 Predicted E3 ubiquitin 97.4 4.1E-05 8.8E-10 56.0 -0.1 47 164-214 7-55 (62)
43 KOG0825 PHD Zn-finger protein 97.4 3.7E-05 8E-10 81.8 -0.5 52 164-216 123-174 (1134)
44 KOG4265 Predicted E3 ubiquitin 97.4 0.00012 2.6E-09 72.1 3.1 48 163-214 289-337 (349)
45 KOG4445 Uncharacterized conser 97.2 7.7E-05 1.7E-09 71.9 0.3 82 132-214 62-187 (368)
46 KOG1785 Tyrosine kinase negati 97.1 0.00056 1.2E-08 68.3 4.3 49 165-217 370-420 (563)
47 KOG0311 Predicted E3 ubiquitin 97.1 6.9E-05 1.5E-09 73.7 -2.1 50 163-215 42-92 (381)
48 KOG1645 RING-finger-containing 97.0 0.00041 9E-09 69.4 2.8 50 163-212 3-55 (463)
49 PF14835 zf-RING_6: zf-RING of 97.0 0.00021 4.6E-09 54.1 0.5 46 164-214 7-52 (65)
50 KOG0824 Predicted E3 ubiquitin 96.6 0.001 2.2E-08 64.4 1.9 47 164-214 7-54 (324)
51 KOG4159 Predicted E3 ubiquitin 96.5 0.0017 3.6E-08 65.9 2.6 49 162-214 82-130 (398)
52 KOG3970 Predicted E3 ubiquitin 96.4 0.0027 5.8E-08 59.2 3.4 49 164-214 50-106 (299)
53 KOG1941 Acetylcholine receptor 96.3 0.0015 3.3E-08 65.2 1.4 48 164-212 365-415 (518)
54 KOG0801 Predicted E3 ubiquitin 96.2 0.0013 2.9E-08 58.4 0.4 30 162-192 175-204 (205)
55 KOG0297 TNF receptor-associate 96.2 0.003 6.4E-08 64.1 2.7 53 162-217 19-71 (391)
56 PF05883 Baculo_RING: Baculovi 96.2 0.0014 3E-08 56.7 0.2 38 164-202 26-69 (134)
57 KOG0978 E3 ubiquitin ligase in 96.1 0.002 4.3E-08 69.1 0.7 47 164-214 643-690 (698)
58 PF11789 zf-Nse: Zinc-finger o 95.7 0.0054 1.2E-07 45.6 1.6 42 163-207 10-53 (57)
59 KOG1428 Inhibitor of type V ad 95.6 0.0066 1.4E-07 68.7 2.5 51 163-214 3485-3545(3738)
60 PHA02862 5L protein; Provision 95.1 0.014 3.1E-07 51.1 2.5 46 164-214 2-54 (156)
61 KOG1952 Transcription factor N 95.0 0.011 2.3E-07 64.2 1.7 50 163-212 190-246 (950)
62 PF14570 zf-RING_4: RING/Ubox 95.0 0.019 4E-07 41.3 2.3 45 167-212 1-47 (48)
63 PHA02825 LAP/PHD finger-like p 94.9 0.023 4.9E-07 50.6 3.2 50 162-215 6-61 (162)
64 PHA03096 p28-like protein; Pro 94.9 0.011 2.4E-07 57.5 1.5 46 165-210 179-231 (284)
65 PF10367 Vps39_2: Vacuolar sor 94.9 0.0096 2.1E-07 48.5 0.8 32 163-196 77-108 (109)
66 KOG2879 Predicted E3 ubiquitin 94.9 0.028 6.1E-07 54.0 3.9 51 162-215 237-289 (298)
67 KOG0826 Predicted E3 ubiquitin 94.7 0.053 1.2E-06 53.3 5.5 46 163-211 299-344 (357)
68 PF12906 RINGv: RING-variant d 94.6 0.023 5E-07 40.4 1.9 40 167-208 1-47 (47)
69 KOG2660 Locus-specific chromos 94.5 0.0084 1.8E-07 58.8 -0.7 49 163-214 14-62 (331)
70 KOG1571 Predicted E3 ubiquitin 94.3 0.0044 9.6E-08 61.4 -3.0 45 163-214 304-348 (355)
71 KOG1002 Nucleotide excision re 94.1 0.02 4.4E-07 59.3 1.1 51 160-214 532-587 (791)
72 KOG1814 Predicted E3 ubiquitin 93.8 0.028 6E-07 56.8 1.5 46 164-210 184-237 (445)
73 KOG3039 Uncharacterized conser 93.4 0.063 1.4E-06 51.0 2.9 52 165-216 222-273 (303)
74 COG5152 Uncharacterized conser 93.3 0.04 8.6E-07 50.7 1.4 45 164-212 196-240 (259)
75 PF15102 TMEM154: TMEM154 prot 92.9 0.039 8.4E-07 48.5 0.7 14 96-109 76-89 (146)
76 KOG4692 Predicted E3 ubiquitin 92.6 0.12 2.6E-06 51.4 3.8 50 162-215 420-469 (489)
77 PF08746 zf-RING-like: RING-li 92.4 0.064 1.4E-06 37.5 1.2 41 167-208 1-43 (43)
78 KOG4739 Uncharacterized protei 92.3 0.053 1.1E-06 51.2 0.9 47 166-216 5-51 (233)
79 KOG1813 Predicted E3 ubiquitin 91.5 0.076 1.6E-06 51.6 0.9 46 165-214 242-287 (313)
80 PF04641 Rtf2: Rtf2 RING-finge 91.4 0.2 4.3E-06 48.0 3.8 54 162-216 111-164 (260)
81 KOG0827 Predicted E3 ubiquitin 91.2 0.018 3.8E-07 57.7 -3.8 50 164-214 196-246 (465)
82 KOG4185 Predicted E3 ubiquitin 90.4 0.18 3.9E-06 48.8 2.4 47 165-212 4-54 (296)
83 KOG3268 Predicted E3 ubiquitin 90.2 0.14 3E-06 46.5 1.3 30 185-214 189-229 (234)
84 PF02439 Adeno_E3_CR2: Adenovi 89.8 0.66 1.4E-05 31.6 4.0 29 78-106 6-34 (38)
85 PF14446 Prok-RING_1: Prokaryo 88.9 0.48 1E-05 34.9 3.1 33 163-195 4-36 (54)
86 PF14447 Prok-RING_4: Prokaryo 88.7 0.23 5.1E-06 36.6 1.3 45 165-215 8-52 (55)
87 PF10272 Tmpp129: Putative tra 88.5 0.33 7.1E-06 48.8 2.7 54 161-214 268-352 (358)
88 KOG1940 Zn-finger protein [Gen 87.8 0.28 6E-06 47.6 1.6 46 164-210 158-204 (276)
89 COG5236 Uncharacterized conser 87.4 0.5 1.1E-05 47.0 3.2 52 159-214 56-109 (493)
90 KOG2114 Vacuolar assembly/sort 87.1 0.27 5.9E-06 53.8 1.2 42 165-212 841-882 (933)
91 COG5175 MOT2 Transcriptional r 86.7 0.38 8.2E-06 47.7 1.9 53 163-216 13-67 (480)
92 KOG2034 Vacuolar sorting prote 86.3 0.31 6.6E-06 53.6 1.1 35 163-199 816-850 (911)
93 KOG4275 Predicted E3 ubiquitin 86.1 0.13 2.8E-06 50.0 -1.6 44 164-215 300-344 (350)
94 COG5222 Uncharacterized conser 85.7 0.6 1.3E-05 45.6 2.7 43 165-210 275-318 (427)
95 PF01708 Gemini_mov: Geminivir 85.6 1.1 2.3E-05 36.4 3.6 47 56-102 16-62 (91)
96 KOG2932 E3 ubiquitin ligase in 85.0 0.33 7.2E-06 47.6 0.6 45 166-215 92-136 (389)
97 KOG1001 Helicase-like transcri 84.5 0.35 7.5E-06 52.6 0.5 47 165-216 455-503 (674)
98 PF07800 DUF1644: Protein of u 83.4 1.2 2.6E-05 39.8 3.3 37 163-200 1-47 (162)
99 PF03854 zf-P11: P-11 zinc fin 83.1 0.36 7.9E-06 34.5 -0.0 29 186-214 18-47 (50)
100 KOG0309 Conserved WD40 repeat- 82.7 0.7 1.5E-05 50.2 1.8 23 185-207 1047-1069(1081)
101 KOG0298 DEAD box-containing he 82.5 0.37 7.9E-06 55.0 -0.3 46 164-212 1153-1198(1394)
102 PF02009 Rifin_STEVOR: Rifin/s 81.1 2 4.4E-05 42.2 4.3 13 91-103 271-283 (299)
103 PF05568 ASFV_J13L: African sw 80.7 3.4 7.4E-05 36.5 5.0 10 98-107 48-57 (189)
104 KOG3653 Transforming growth fa 80.6 4 8.6E-05 42.6 6.3 14 190-203 289-303 (534)
105 KOG0802 E3 ubiquitin ligase [P 80.2 1.1 2.4E-05 47.5 2.3 45 163-215 478-522 (543)
106 PF10577 UPF0560: Uncharacteri 80.0 3.8 8.2E-05 45.1 6.2 37 285-321 634-670 (807)
107 KOG1100 Predicted E3 ubiquitin 79.5 1.2 2.6E-05 41.6 2.0 40 167-214 161-201 (207)
108 PF12273 RCR: Chitin synthesis 79.1 1.9 4E-05 36.9 3.0 8 98-105 22-29 (130)
109 PF13908 Shisa: Wnt and FGF in 78.8 3 6.5E-05 37.5 4.4 7 24-30 20-30 (179)
110 TIGR01478 STEVOR variant surfa 78.5 2.5 5.4E-05 41.2 3.9 22 87-108 268-289 (295)
111 KOG3161 Predicted E3 ubiquitin 78.3 0.61 1.3E-05 49.8 -0.3 44 165-211 12-55 (861)
112 PTZ00370 STEVOR; Provisional 77.7 2.6 5.6E-05 41.1 3.8 23 86-108 263-285 (296)
113 KOG1609 Protein involved in mR 77.5 0.88 1.9E-05 43.9 0.6 51 164-215 78-136 (323)
114 KOG3053 Uncharacterized conser 77.1 0.98 2.1E-05 43.3 0.7 52 162-214 18-83 (293)
115 PF01102 Glycophorin_A: Glycop 76.4 5.1 0.00011 34.4 4.8 20 71-90 58-79 (122)
116 PF08114 PMP1_2: ATPase proteo 75.9 2.2 4.8E-05 29.6 2.0 30 78-107 10-39 (43)
117 COG5183 SSM4 Protein involved 75.3 1.9 4.2E-05 47.2 2.4 53 163-216 11-69 (1175)
118 PF06024 DUF912: Nucleopolyhed 74.1 1.3 2.8E-05 36.6 0.6 32 75-106 59-90 (101)
119 KOG1812 Predicted E3 ubiquitin 73.4 1.4 3.1E-05 44.8 0.8 38 163-201 145-183 (384)
120 KOG3002 Zn finger protein [Gen 71.5 2.6 5.6E-05 41.5 2.1 47 163-215 47-93 (299)
121 KOG0269 WD40 repeat-containing 70.2 3.7 8.1E-05 44.8 3.1 41 165-207 780-820 (839)
122 KOG3800 Predicted E3 ubiquitin 70.2 3.2 7E-05 40.5 2.4 50 166-215 2-53 (300)
123 COG5220 TFB3 Cdk activating ki 69.7 1.4 3.1E-05 41.9 -0.1 51 163-213 9-64 (314)
124 KOG3899 Uncharacterized conser 68.2 2.3 5.1E-05 41.5 1.0 29 186-214 325-366 (381)
125 TIGR01477 RIFIN variant surfac 67.3 7 0.00015 39.3 4.1 7 97-103 331-337 (353)
126 PTZ00046 rifin; Provisional 66.2 7.4 0.00016 39.2 4.1 6 97-102 336-341 (358)
127 PF13901 DUF4206: Domain of un 65.6 4.8 0.0001 37.2 2.5 41 163-209 151-196 (202)
128 KOG0825 PHD Zn-finger protein 65.5 3.4 7.3E-05 45.3 1.6 58 163-220 95-161 (1134)
129 PF02891 zf-MIZ: MIZ/SP-RING z 65.4 2.7 5.9E-05 30.2 0.7 43 165-211 3-50 (50)
130 PF05290 Baculo_IE-1: Baculovi 64.7 4.6 0.0001 35.1 2.0 51 164-214 80-133 (140)
131 KOG1829 Uncharacterized conser 64.6 2.1 4.6E-05 45.6 -0.1 44 163-210 510-558 (580)
132 KOG4362 Transcriptional regula 63.7 1.7 3.7E-05 47.0 -1.0 48 164-215 21-71 (684)
133 PF05454 DAG1: Dystroglycan (D 63.7 2.3 5E-05 41.7 0.0 14 94-107 161-174 (290)
134 PF10571 UPF0547: Uncharacteri 62.5 4.5 9.9E-05 25.2 1.2 23 166-190 2-24 (26)
135 PF10873 DUF2668: Protein of u 61.8 5 0.00011 35.4 1.7 28 22-54 24-51 (155)
136 smart00249 PHD PHD zinc finger 61.4 5.8 0.00013 26.4 1.7 31 166-197 1-31 (47)
137 PF02977 CarbpepA_inh: Carboxy 60.4 7 0.00015 27.8 1.9 24 21-52 4-29 (46)
138 PF05393 Hum_adeno_E3A: Human 60.2 18 0.00039 29.3 4.5 9 98-106 52-60 (94)
139 KOG4718 Non-SMC (structural ma 60.0 4.2 9.2E-05 38.0 1.0 44 165-211 182-225 (235)
140 PF01102 Glycophorin_A: Glycop 59.3 14 0.00031 31.7 4.0 17 74-90 66-82 (122)
141 smart00132 LIM Zinc-binding do 59.1 7.8 0.00017 24.8 2.0 36 167-212 2-37 (39)
142 PF07975 C1_4: TFIIH C1-like d 59.1 6.5 0.00014 28.6 1.7 42 167-209 2-50 (51)
143 PF08374 Protocadherin: Protoc 58.4 7.1 0.00015 36.6 2.2 30 75-105 37-66 (221)
144 KOG3005 GIY-YIG type nuclease 57.8 5.4 0.00012 38.6 1.4 49 165-213 183-243 (276)
145 PF15050 SCIMP: SCIMP protein 57.7 20 0.00044 30.7 4.6 7 100-106 32-38 (133)
146 PTZ00370 STEVOR; Provisional 56.9 13 0.00028 36.4 3.8 34 73-106 253-286 (296)
147 TIGR01478 STEVOR variant surfa 56.9 13 0.00028 36.3 3.8 34 73-106 257-290 (295)
148 KOG2817 Predicted E3 ubiquitin 56.0 8.5 0.00018 39.1 2.5 44 164-208 334-380 (394)
149 PF11189 DUF2973: Protein of u 55.9 30 0.00065 26.4 4.9 12 114-125 42-53 (65)
150 TIGR00917 2A060601 Niemann-Pic 55.5 23 0.00049 41.4 6.1 13 188-200 397-409 (1204)
151 PF12768 Rax2: Cortical protei 53.9 12 0.00027 36.4 3.2 31 76-106 229-259 (281)
152 PF15330 SIT: SHP2-interacting 53.2 17 0.00038 30.3 3.6 25 82-106 4-28 (107)
153 TIGR00622 ssl1 transcription f 53.2 17 0.00037 30.8 3.5 46 164-209 55-110 (112)
154 PF15065 NCU-G1: Lysosomal tra 53.1 9 0.00019 38.6 2.1 29 71-99 312-340 (350)
155 KOG2066 Vacuolar assembly/sort 51.9 5.7 0.00012 43.6 0.6 44 163-208 783-830 (846)
156 PF15298 AJAP1_PANP_C: AJAP1/P 51.7 6.6 0.00014 36.3 0.9 35 73-107 95-129 (205)
157 KOG2052 Activin A type IB rece 51.7 21 0.00046 37.2 4.5 17 90-106 145-161 (513)
158 KOG3637 Vitronectin receptor, 51.2 13 0.00028 42.6 3.2 27 75-101 976-1002(1030)
159 PF07010 Endomucin: Endomucin; 50.3 23 0.0005 33.6 4.2 7 97-103 209-215 (259)
160 PF00628 PHD: PHD-finger; Int 50.0 8.2 0.00018 27.0 1.0 43 166-209 1-49 (51)
161 PF12191 stn_TNFRSF12A: Tumour 48.9 6.9 0.00015 33.7 0.5 27 74-100 75-101 (129)
162 KOG1815 Predicted E3 ubiquitin 47.4 9.6 0.00021 39.4 1.4 36 163-201 69-104 (444)
163 PF01034 Syndecan: Syndecan do 47.3 6.1 0.00013 30.1 -0.1 17 90-106 23-39 (64)
164 PF13719 zinc_ribbon_5: zinc-r 47.2 11 0.00024 25.3 1.2 26 166-191 4-36 (37)
165 KOG3607 Meltrins, fertilins an 47.0 53 0.0011 36.3 6.9 34 22-60 625-661 (716)
166 PF12669 P12: Virus attachment 45.7 21 0.00045 26.6 2.5 6 99-104 18-23 (58)
167 PF12877 DUF3827: Domain of un 45.2 16 0.00035 39.5 2.6 16 299-314 505-520 (684)
168 PF14914 LRRC37AB_C: LRRC37A/B 44.5 38 0.00081 30.1 4.3 28 78-105 121-148 (154)
169 PF05568 ASFV_J13L: African sw 44.5 30 0.00065 30.7 3.7 26 81-106 35-60 (189)
170 KOG2068 MOT2 transcription fac 43.7 21 0.00046 35.5 3.0 49 165-214 250-299 (327)
171 PF15102 TMEM154: TMEM154 prot 43.4 9.8 0.00021 33.6 0.6 24 83-106 66-89 (146)
172 PF07010 Endomucin: Endomucin; 43.1 34 0.00073 32.5 4.1 15 93-107 202-216 (259)
173 PF15183 MRAP: Melanocortin-2 43.1 32 0.0007 27.6 3.4 8 47-54 10-17 (90)
174 KOG1812 Predicted E3 ubiquitin 43.0 12 0.00026 38.0 1.3 44 164-208 306-351 (384)
175 PF13717 zinc_ribbon_4: zinc-r 42.4 17 0.00037 24.3 1.5 26 166-191 4-36 (36)
176 PHA02650 hypothetical protein; 42.3 51 0.0011 26.2 4.3 16 87-102 58-73 (81)
177 PF03229 Alpha_GJ: Alphavirus 41.5 52 0.0011 28.0 4.6 31 76-106 84-114 (126)
178 PF06024 DUF912: Nucleopolyhed 41.0 7.8 0.00017 31.9 -0.4 37 71-107 58-94 (101)
179 PF05399 EVI2A: Ectropic viral 40.5 41 0.00088 31.6 4.2 11 78-88 130-140 (227)
180 PF06906 DUF1272: Protein of u 40.1 37 0.00081 25.2 3.1 46 166-214 7-53 (57)
181 KOG3113 Uncharacterized conser 39.4 26 0.00057 33.7 2.8 50 164-215 111-160 (293)
182 PLN02189 cellulose synthase 39.4 44 0.00095 38.3 5.0 54 163-216 33-90 (1040)
183 PF01363 FYVE: FYVE zinc finge 39.1 14 0.0003 27.6 0.8 36 163-198 8-43 (69)
184 PF06305 DUF1049: Protein of u 38.7 58 0.0013 24.0 4.2 26 78-103 21-46 (68)
185 PF14979 TMEM52: Transmembrane 37.4 64 0.0014 28.6 4.7 29 79-107 22-50 (154)
186 PTZ00208 65 kDa invariant surf 36.7 24 0.00052 36.1 2.2 29 78-106 386-414 (436)
187 PF02009 Rifin_STEVOR: Rifin/s 35.6 52 0.0011 32.5 4.3 27 80-106 257-283 (299)
188 PF14569 zf-UDP: Zinc-binding 35.5 55 0.0012 26.0 3.6 54 163-216 8-65 (80)
189 KOG1025 Epidermal growth facto 35.1 76 0.0017 35.9 5.8 8 24-31 570-577 (1177)
190 PF11980 DUF3481: Domain of un 34.8 59 0.0013 26.2 3.7 33 74-106 12-44 (87)
191 PF15179 Myc_target_1: Myc tar 34.4 63 0.0014 29.7 4.3 30 76-105 21-50 (197)
192 PHA02844 putative transmembran 34.2 53 0.0012 25.7 3.3 10 91-100 61-70 (75)
193 PF12259 DUF3609: Protein of u 34.0 23 0.00049 35.9 1.6 15 92-106 313-327 (361)
194 PLN02436 cellulose synthase A 33.5 55 0.0012 37.6 4.6 54 163-216 35-92 (1094)
195 cd00065 FYVE FYVE domain; Zinc 33.4 33 0.00072 24.4 2.0 35 165-199 3-37 (57)
196 PF06679 DUF1180: Protein of u 33.4 56 0.0012 29.5 3.8 9 95-103 110-118 (163)
197 PF05961 Chordopox_A13L: Chord 33.4 64 0.0014 24.9 3.5 15 81-95 6-20 (68)
198 PHA03099 epidermal growth fact 33.2 36 0.00077 29.6 2.4 14 93-106 117-130 (139)
199 PRK01844 hypothetical protein; 33.1 1E+02 0.0022 24.1 4.6 20 78-97 5-24 (72)
200 PF15069 FAM163: FAM163 family 32.7 67 0.0015 28.3 4.1 26 81-106 13-38 (143)
201 PF04906 Tweety: Tweety; Inte 32.3 62 0.0013 33.2 4.4 29 78-106 21-49 (406)
202 TIGR02976 phageshock_pspB phag 32.2 94 0.002 24.4 4.5 7 100-106 25-31 (75)
203 PF07406 NICE-3: NICE-3 protei 32.0 66 0.0014 29.5 4.2 10 190-199 124-133 (186)
204 KOG4367 Predicted Zn-finger pr 30.8 24 0.00052 36.5 1.1 32 163-198 3-34 (699)
205 PF05545 FixQ: Cbb3-type cytoc 30.5 1E+02 0.0022 21.7 4.1 11 92-102 20-30 (49)
206 PF06844 DUF1244: Protein of u 30.2 28 0.0006 26.7 1.1 12 189-200 11-22 (68)
207 KOG4482 Sarcoglycan complex, a 29.4 84 0.0018 32.1 4.6 26 77-103 297-322 (449)
208 smart00064 FYVE Protein presen 29.1 49 0.0011 24.5 2.4 36 164-199 10-45 (68)
209 PF08374 Protocadherin: Protoc 28.9 26 0.00056 32.9 1.0 35 75-110 34-68 (221)
210 PF04478 Mid2: Mid2 like cell 28.9 6.1 0.00013 35.1 -3.0 30 77-107 50-79 (154)
211 PF02060 ISK_Channel: Slow vol 28.7 1E+02 0.0022 26.7 4.4 31 76-106 43-73 (129)
212 PF07649 C1_3: C1-like domain; 28.6 44 0.00095 21.0 1.7 29 166-195 2-30 (30)
213 PF00412 LIM: LIM domain; Int 28.5 26 0.00056 24.8 0.7 38 167-214 1-38 (58)
214 PF14991 MLANA: Protein melan- 28.3 13 0.00028 31.5 -1.1 11 96-106 40-50 (118)
215 KOG2807 RNA polymerase II tran 28.1 47 0.001 33.2 2.6 68 141-209 305-374 (378)
216 KOG0824 Predicted E3 ubiquitin 28.0 23 0.00049 35.0 0.4 49 163-214 104-152 (324)
217 PRK14710 hypothetical protein; 27.6 42 0.00092 26.1 1.8 21 72-92 6-26 (86)
218 smart00647 IBR In Between Ring 27.6 20 0.00044 25.8 -0.0 21 178-198 38-58 (64)
219 PHA03291 envelope glycoprotein 27.1 42 0.00091 33.9 2.1 37 72-108 281-320 (401)
220 PF05434 Tmemb_9: TMEM9; Inte 27.1 41 0.00089 29.9 1.8 8 78-85 58-65 (149)
221 PF04277 OAD_gamma: Oxaloaceta 26.8 1.4E+02 0.0029 22.9 4.6 24 82-105 9-32 (79)
222 PHA03049 IMV membrane protein; 26.5 94 0.002 23.9 3.4 13 83-95 8-20 (68)
223 PLN02400 cellulose synthase 26.5 76 0.0017 36.6 4.2 54 163-216 35-92 (1085)
224 PF14584 DUF4446: Protein of u 26.3 78 0.0017 28.1 3.5 28 147-174 80-107 (151)
225 PF07423 DUF1510: Protein of u 26.2 47 0.001 31.3 2.2 8 287-294 144-151 (217)
226 PF13314 DUF4083: Domain of un 25.7 1.9E+02 0.0041 21.6 4.8 9 95-103 23-31 (58)
227 PF14311 DUF4379: Domain of un 25.7 47 0.001 23.9 1.7 25 183-208 31-55 (55)
228 KOG3842 Adaptor protein Pellin 25.5 62 0.0013 32.3 2.9 50 164-214 341-415 (429)
229 KOG3579 Predicted E3 ubiquitin 25.5 38 0.00083 33.2 1.5 38 164-202 268-306 (352)
230 PF05399 EVI2A: Ectropic viral 25.5 76 0.0016 29.9 3.3 11 76-86 131-141 (227)
231 PF01299 Lamp: Lysosome-associ 25.4 41 0.00088 32.9 1.7 9 98-106 292-300 (306)
232 PRK05978 hypothetical protein; 25.2 51 0.0011 29.2 2.1 24 187-215 42-65 (148)
233 PF04710 Pellino: Pellino; In 24.6 25 0.00054 36.0 0.0 43 165-211 278-337 (416)
234 PF04639 Baculo_E56: Baculovir 23.8 44 0.00095 32.8 1.5 7 44-50 219-225 (305)
235 PRK00523 hypothetical protein; 23.6 1.9E+02 0.0041 22.6 4.7 14 78-91 6-19 (72)
236 PLN02638 cellulose synthase A 23.5 1.2E+02 0.0026 35.1 5.0 54 163-216 16-73 (1079)
237 COG3763 Uncharacterized protei 22.8 1.9E+02 0.0041 22.5 4.5 18 78-95 5-22 (71)
238 PF15145 DUF4577: Domain of un 22.4 1.5E+02 0.0033 25.2 4.2 21 75-95 61-81 (128)
239 PF04689 S1FA: DNA binding pro 22.3 60 0.0013 24.8 1.7 22 71-92 7-28 (69)
240 PF15050 SCIMP: SCIMP protein 22.3 1.4E+02 0.0031 25.7 4.0 8 100-107 29-36 (133)
241 PTZ00046 rifin; Provisional 22.2 1.2E+02 0.0027 30.6 4.4 17 90-106 326-342 (358)
242 TIGR01477 RIFIN variant surfac 22.2 1.2E+02 0.0027 30.6 4.4 16 91-106 322-337 (353)
243 PF05283 MGC-24: Multi-glycosy 22.1 1.3E+02 0.0028 27.7 4.1 8 96-103 178-185 (186)
244 KOG2071 mRNA cleavage and poly 22.1 53 0.0012 35.2 1.8 34 163-198 512-556 (579)
245 PRK03814 oxaloacetate decarbox 21.9 1.7E+02 0.0037 23.4 4.3 24 82-105 16-39 (85)
246 PF07204 Orthoreo_P10: Orthore 21.7 67 0.0015 26.4 2.0 6 98-103 60-65 (98)
247 PF04423 Rad50_zn_hook: Rad50 21.6 30 0.00065 24.9 -0.1 11 204-214 22-32 (54)
248 PF07191 zinc-ribbons_6: zinc- 21.6 28 0.00061 27.0 -0.2 41 165-214 2-42 (70)
249 TIGR01195 oadG_fam sodium pump 21.5 1.8E+02 0.0039 23.0 4.3 12 89-100 19-30 (82)
250 PF11346 DUF3149: Protein of u 21.4 1.9E+02 0.0042 20.2 3.9 9 96-104 27-35 (42)
251 KOG4550 Predicted membrane pro 21.2 1E+02 0.0022 32.2 3.5 7 45-51 491-497 (606)
252 PF06143 Baculo_11_kDa: Baculo 21.2 1.6E+02 0.0035 23.7 4.0 11 76-86 35-45 (84)
253 PF10943 DUF2632: Protein of u 21.2 1.4E+02 0.0031 26.7 4.1 12 95-106 116-127 (233)
254 PF06697 DUF1191: Protein of u 20.9 39 0.00085 33.0 0.5 9 45-53 173-181 (278)
255 PHA03283 envelope glycoprotein 20.9 1.3E+02 0.0027 32.1 4.2 12 78-89 400-411 (542)
256 PF10497 zf-4CXXC_R1: Zinc-fin 20.6 1.3E+02 0.0028 25.0 3.5 24 187-210 37-69 (105)
257 KOG2041 WD40 repeat protein [G 20.0 65 0.0014 35.7 2.0 45 165-213 1132-1185(1189)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.2e-18 Score=167.45 Aligned_cols=76 Identities=32% Similarity=0.832 Sum_probs=66.4
Q ss_pred CCCCHHHHHhhcceEeecCCCCcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCC-CCCcccCCccccC
Q 018110 140 VGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRSPIVKIN 216 (360)
Q Consensus 140 ~gl~~~~i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~~~ 216 (360)
..+.+..++++|...|+..+.......|+||||+|+.++++|+|| |+|.||..||++||.... .||+||+++....
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 456788999999999998776544579999999999999999999 999999999999998764 5999999887643
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.44 E-value=2.2e-14 Score=100.64 Aligned_cols=44 Identities=50% Similarity=1.282 Sum_probs=40.3
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCccc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 209 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 209 (360)
++|+||+++|..++.+..++ |+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999989999998 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.24 E-value=5.9e-12 Score=118.46 Aligned_cols=77 Identities=26% Similarity=0.698 Sum_probs=59.2
Q ss_pred cCCCCHHHHHhhcceEeecC--CCCcCCCcccccCCccccCc----ceeecCCCCCCCChhhHHHHHhcCCCCCcccCCc
Q 018110 139 TVGLQSSVIREIAVLKYKKS--DGLVEGTECSVCLSEFQEDE----TLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 212 (360)
Q Consensus 139 ~~gl~~~~i~~lp~~~~~~~--~~~~~~~~C~ICl~~~~~~~----~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 212 (360)
..+..+..++.+|.+..... .....+.+|+||++.+...+ .+.+++.|+|.||..||.+|++.+.+||+||.++
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 45668889999998764432 22335689999999987643 1334556999999999999999999999999988
Q ss_pred ccc
Q 018110 213 VKI 215 (360)
Q Consensus 213 ~~~ 215 (360)
..+
T Consensus 227 ~~v 229 (238)
T PHA02929 227 ISV 229 (238)
T ss_pred eEE
Confidence 653
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.9e-11 Score=119.34 Aligned_cols=52 Identities=37% Similarity=1.066 Sum_probs=44.0
Q ss_pred cCCCcccccCCc-cccC---------cceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 162 VEGTECSVCLSE-FQED---------ETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~-~~~~---------~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
..+..|.||+++ |..+ ...+.|| |||+||.+|++.|++++++||+||.++.-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 357899999999 4443 2456788 99999999999999999999999999654
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.19 E-value=8.8e-12 Score=97.04 Aligned_cols=45 Identities=36% Similarity=1.071 Sum_probs=35.8
Q ss_pred CCcccccCCcccc----------CcceeecCCCCCCCChhhHHHHHhcCCCCCccc
Q 018110 164 GTECSVCLSEFQE----------DETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 209 (360)
Q Consensus 164 ~~~C~ICl~~~~~----------~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 209 (360)
++.|+||++.|.+ .-.+...+ |+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4569999999933 22444455 999999999999999999999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-11 Score=117.17 Aligned_cols=51 Identities=45% Similarity=1.229 Sum_probs=47.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~ 214 (360)
.+.+|+|||+.|..++.++++| |.|.||..||++|+. -+..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4589999999999999999999 999999999999998 57789999999875
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.87 E-value=1.7e-09 Score=74.00 Aligned_cols=44 Identities=61% Similarity=1.396 Sum_probs=36.9
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCc
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPI 212 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l 212 (360)
+|+||++.+ .+.+...+ |+|.||..|+..|++. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 33555565 9999999999999987 77899999764
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.86 E-value=1.2e-09 Score=86.95 Aligned_cols=52 Identities=33% Similarity=0.852 Sum_probs=40.0
Q ss_pred CCCcccccCCcccc--------C-cceeecCCCCCCCChhhHHHHHhc---CCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQE--------D-ETLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~--------~-~~~r~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~~ 214 (360)
.++.|.||...|+. + +-..+...|+|.||.+||.+||.. +..||+||+++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 47889999999973 1 112234469999999999999975 5679999998753
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.79 E-value=2.1e-09 Score=77.27 Aligned_cols=47 Identities=36% Similarity=0.955 Sum_probs=39.4
Q ss_pred CCcccccCCccccCcceeecCCCCCC-CChhhHHHHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
+..|.||++... .+..+| |||. |+..|+..|++....||+||+++..
T Consensus 2 ~~~C~iC~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS---SEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCC---ceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 468999999854 367778 9999 9999999999999999999999854
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.73 E-value=4.8e-09 Score=71.66 Aligned_cols=39 Identities=36% Similarity=1.135 Sum_probs=33.0
Q ss_pred ccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcc
Q 018110 167 CSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLC 208 (360)
Q Consensus 167 C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~C 208 (360)
|+||++.+.+ .+..++ |||.|+..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998866 556776 99999999999999998999998
No 11
>PHA02926 zinc finger-like protein; Provisional
Probab=98.73 E-value=3.9e-09 Score=97.48 Aligned_cols=54 Identities=37% Similarity=0.914 Sum_probs=41.8
Q ss_pred cCCCcccccCCccccC-----cceeecCCCCCCCChhhHHHHHhcC------CCCCcccCCcccc
Q 018110 162 VEGTECSVCLSEFQED-----ETLRLLPKCNHAFHISCIDTWLRSH------TNCPLCRSPIVKI 215 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~-----~~~r~lp~C~H~FH~~CI~~Wl~~~------~tCP~CR~~l~~~ 215 (360)
..+.+|+|||+..-.. ....+|+.|+|.||..||..|.+.+ .+||+||..+..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 3568999999986432 2345677799999999999999743 4599999987654
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.1e-08 Score=95.03 Aligned_cols=53 Identities=23% Similarity=0.671 Sum_probs=40.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc---CCCCCcccCCccccCCCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRSPIVKINHAA 219 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~~~~~~~ 219 (360)
...+|.|||+.-+ +.|. +. |||.||+.||.+||.. .+.||+||..+....-..
T Consensus 46 ~~FdCNICLd~ak--dPVv-Tl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 46 GFFDCNICLDLAK--DPVV-TL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CceeeeeeccccC--CCEE-ee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 4579999999744 3454 44 9999999999999975 445999999886544333
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.67 E-value=1.5e-08 Score=92.27 Aligned_cols=49 Identities=27% Similarity=0.811 Sum_probs=39.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc----------------CCCCCcccCCcccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----------------HTNCPLCRSPIVKI 215 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----------------~~tCP~CR~~l~~~ 215 (360)
++.+|+||++.+.+ ..+++ |||.||..||..|+.. ...||+||.++...
T Consensus 17 ~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 45789999998754 34466 9999999999999852 24699999998653
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.8e-09 Score=108.88 Aligned_cols=51 Identities=33% Similarity=0.925 Sum_probs=44.9
Q ss_pred CCCcccccCCccccCcc--eeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDET--LRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~--~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.+..|+||++++..+.. .+.+| |+|+||..|+..|+++..+||+||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 46789999999987654 67788 99999999999999999999999995554
No 15
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.7e-09 Score=97.95 Aligned_cols=48 Identities=35% Similarity=0.818 Sum_probs=41.2
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
...|.+||+.... ...+| |||+||..||..|......||+||..+.+.
T Consensus 239 ~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 239 TRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 3689999998755 34466 999999999999999999999999998763
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.57 E-value=3.7e-08 Score=69.10 Aligned_cols=44 Identities=30% Similarity=0.896 Sum_probs=38.3
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccC
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS 210 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 210 (360)
.|.||++.|......++++ |||+|+..||..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666777887 9999999999999867788999985
No 17
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.56 E-value=2.8e-08 Score=77.67 Aligned_cols=51 Identities=33% Similarity=0.686 Sum_probs=38.1
Q ss_pred CcccccCCcccc-----------Cc-ceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 165 TECSVCLSEFQE-----------DE-TLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 165 ~~C~ICl~~~~~-----------~~-~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
+.|+||...|-. ++ -...-..|+|.||.+||.+||..+..||++|+++...
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 567777665532 22 2222334999999999999999999999999998753
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.52 E-value=6.6e-08 Score=63.73 Aligned_cols=38 Identities=45% Similarity=1.251 Sum_probs=32.2
Q ss_pred ccccCCccccCcceeecCCCCCCCChhhHHHHHh-cCCCCCcc
Q 018110 167 CSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-SHTNCPLC 208 (360)
Q Consensus 167 C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~C 208 (360)
|+||++.. .....++ |+|.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999883 3566777 999999999999998 66779987
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.50 E-value=4.4e-08 Score=67.21 Aligned_cols=39 Identities=44% Similarity=1.255 Sum_probs=33.1
Q ss_pred ccccCCccccCcceeecCCCCCCCChhhHHHHHh--cCCCCCcc
Q 018110 167 CSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR--SHTNCPLC 208 (360)
Q Consensus 167 C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~--~~~tCP~C 208 (360)
|+||++.+... +++++ |+|.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998764 35676 999999999999998 45679998
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.8e-08 Score=86.87 Aligned_cols=49 Identities=33% Similarity=0.790 Sum_probs=40.9
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
-..|+|||+.+.+... ...+|||+||..||..-++....||+||..|..
T Consensus 131 ~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3689999999877443 334699999999999999999999999986643
No 21
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=5.4e-08 Score=75.48 Aligned_cols=52 Identities=33% Similarity=0.781 Sum_probs=38.8
Q ss_pred CCCcccccCCcccc---------CcceeecCCCCCCCChhhHHHHHhc---CCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQE---------DETLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~---------~~~~r~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~~ 214 (360)
.++.|.||...|.. ++-..++..|.|.||..||.+|+.. +..||+||+.+..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 34589999999864 2222234459999999999999964 4569999998753
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.35 E-value=4e-07 Score=67.77 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=39.1
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
..|+||++.+.+. .+++ |||+|+..||.+|++.+.+||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999998763 4566 9999999999999998899999998874
No 23
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.35 E-value=2.6e-07 Score=64.41 Aligned_cols=38 Identities=37% Similarity=0.989 Sum_probs=28.1
Q ss_pred ccccCCccccCcceeecCCCCCCCChhhHHHHHhcC----CCCCcc
Q 018110 167 CSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH----TNCPLC 208 (360)
Q Consensus 167 C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~----~tCP~C 208 (360)
|+||++.|.+ ...|+ |||.|+..||..|++.. ..||+|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999976 34566 99999999999999753 369988
No 24
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.25 E-value=1.8e-07 Score=100.41 Aligned_cols=63 Identities=30% Similarity=0.725 Sum_probs=45.2
Q ss_pred cceEeecCCCCcCCCcccccCCccccCc---ceeecCCCCCCCChhhHHHHHhc--CCCCCcccCCcc
Q 018110 151 AVLKYKKSDGLVEGTECSVCLSEFQEDE---TLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRSPIV 213 (360)
Q Consensus 151 p~~~~~~~~~~~~~~~C~ICl~~~~~~~---~~r~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~ 213 (360)
-.++.+......+.++||||+..+..-+ .-...++|.|.||..|+-+|++. +.+||+||..+.
T Consensus 1456 ~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1456 GLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred HHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3333333344456789999998776322 22445679999999999999975 678999998764
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.1e-06 Score=89.17 Aligned_cols=51 Identities=29% Similarity=0.882 Sum_probs=39.6
Q ss_pred CCCcccccCCccccCc--------------ceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDE--------------TLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~--------------~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~ 214 (360)
...+|+|||.++.--. .-..+| |.|+||..|+..|+. .+-.||+||.++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3468999999875311 112346 999999999999998 45589999999875
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=8.9e-07 Score=89.26 Aligned_cols=50 Identities=32% Similarity=0.698 Sum_probs=42.0
Q ss_pred CcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 161 LVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 161 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
+.....|+||++.|... .+++ |+|.||..||..|+.....||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 34567899999998653 3566 99999999999999988899999998754
No 27
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.8e-07 Score=73.61 Aligned_cols=52 Identities=33% Similarity=0.719 Sum_probs=38.9
Q ss_pred CCCcccccCCccc-------------cCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQ-------------EDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~-------------~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.-+.|+||...+- .++-+..-..|+|.||..||.+||+.+..||+|.++...
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 3467999975541 122223333599999999999999999999999888754
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.08 E-value=2.1e-06 Score=61.85 Aligned_cols=42 Identities=21% Similarity=0.817 Sum_probs=32.7
Q ss_pred cccccCCccccCcceeecCCCC-----CCCChhhHHHHHhc--CCCCCccc
Q 018110 166 ECSVCLSEFQEDETLRLLPKCN-----HAFHISCIDTWLRS--HTNCPLCR 209 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~-----H~FH~~CI~~Wl~~--~~tCP~CR 209 (360)
.|.||++ ...++...+.| |. |.||..||.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 33444555788 85 89999999999964 45899995
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.1e-06 Score=80.10 Aligned_cols=49 Identities=33% Similarity=0.809 Sum_probs=40.2
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHH-HHhcCCC-CCcccCCcccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDT-WLRSHTN-CPLCRSPIVKI 215 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~-Wl~~~~t-CP~CR~~l~~~ 215 (360)
.+..|+||++..+. ...++ |||+||..||.. |-.++.. ||+||+.+.+.
T Consensus 214 ~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 46789999998654 44566 999999999999 9877666 99999988763
No 30
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.97 E-value=1.7e-06 Score=66.80 Aligned_cols=51 Identities=35% Similarity=0.836 Sum_probs=24.2
Q ss_pred CCcccccCCccc-cCc-ceeecC--CCCCCCChhhHHHHHhc----C-------CCCCcccCCccc
Q 018110 164 GTECSVCLSEFQ-EDE-TLRLLP--KCNHAFHISCIDTWLRS----H-------TNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~-~~~-~~r~lp--~C~H~FH~~CI~~Wl~~----~-------~tCP~CR~~l~~ 214 (360)
+.+|.||++.+. .++ ...+.+ +|++.||..||.+||.. + .+||.|+.+|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999999876 332 223333 69999999999999962 1 249999998753
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.95 E-value=3.8e-06 Score=58.88 Aligned_cols=34 Identities=29% Similarity=0.830 Sum_probs=21.5
Q ss_pred ccccCCccccCc-ceeecCCCCCCCChhhHHHHHhcC
Q 018110 167 CSVCLSEFQEDE-TLRLLPKCNHAFHISCIDTWLRSH 202 (360)
Q Consensus 167 C~ICl~~~~~~~-~~r~lp~C~H~FH~~CI~~Wl~~~ 202 (360)
|+||++ |...+ ..++|+ |||.|+.+||.+|++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 75544 557798 99999999999999853
No 32
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=3.8e-06 Score=79.71 Aligned_cols=51 Identities=29% Similarity=0.720 Sum_probs=42.1
Q ss_pred CCCcccccCCccccCc-------ceeecCCCCCCCChhhHHHHH--hcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDE-------TLRLLPKCNHAFHISCIDTWL--RSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~-------~~r~lp~C~H~FH~~CI~~Wl--~~~~tCP~CR~~l~~ 214 (360)
++..|+||-..+.... .+..|. |+|+||..||+-|. ..+++||-|+..+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 5678999998886544 566787 99999999999997 467899999887653
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=9.9e-06 Score=82.87 Aligned_cols=47 Identities=30% Similarity=0.694 Sum_probs=37.0
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-----CCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-----HTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~~l~~ 214 (360)
+..|+|||+..... + .+ .|||+||..||-.++.. ...||+||..+..
T Consensus 186 ~~~CPICL~~~~~p--~-~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP--V-RT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc--c-cc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67899999986543 2 22 49999999999998753 3569999998876
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.77 E-value=1.1e-05 Score=81.31 Aligned_cols=51 Identities=37% Similarity=0.874 Sum_probs=40.2
Q ss_pred CCcCCCcccccCCccccCc-ceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 160 GLVEGTECSVCLSEFQEDE-TLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 160 ~~~~~~~C~ICl~~~~~~~-~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
+..+-.+|+||||.+.... .++... |.|.||..|+..| ...+||+||.-..
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence 3456679999999997654 334455 9999999999999 4568999998654
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.74 E-value=2.3e-05 Score=76.46 Aligned_cols=52 Identities=27% Similarity=0.613 Sum_probs=38.1
Q ss_pred CCcccccCCccccCcc--eeecCCCCCCCChhhHHHHHh-cCCCCCcccCCccccC
Q 018110 164 GTECSVCLSEFQEDET--LRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVKIN 216 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~--~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 216 (360)
+..|+||+.+-...-. +.+.+ |||.||..||+..+. ....||.|+.++...+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4679999986333222 33334 999999999999664 4567999999887643
No 36
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.3e-05 Score=79.42 Aligned_cols=48 Identities=29% Similarity=0.944 Sum_probs=36.5
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhc---CCCCCcccCCc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRSPI 212 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l 212 (360)
.+|.||.+-+.....+.-...|||+||..|+..|+.. +.+||+|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 5799996555555555555569999999999999974 45799999433
No 37
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.5e-05 Score=74.00 Aligned_cols=43 Identities=40% Similarity=0.952 Sum_probs=38.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 209 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 209 (360)
+...|+||++.|... +++| |+|.||..||..|+.....||.||
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 567899999999886 7787 999999999999988556799999
No 38
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.64 E-value=1.6e-05 Score=77.70 Aligned_cols=47 Identities=28% Similarity=0.740 Sum_probs=40.6
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
-..|.||.+-|.. ..++| |+|.||.-||+.+|..+..||.|+.++..
T Consensus 23 lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccch
Confidence 3579999998865 34567 99999999999999999999999998754
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.53 E-value=4e-05 Score=73.57 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=40.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.-..|-||-+-|.. ..+..|||-||.-||+..|..+..||+||.+...
T Consensus 24 s~lrC~IC~~~i~i----p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRISI----PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheeec----ceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 44689999988754 3333499999999999999999999999998754
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=4.8e-05 Score=75.49 Aligned_cols=54 Identities=35% Similarity=0.980 Sum_probs=42.4
Q ss_pred CCCcccccCCccccCc----ceeecCCCCCCCChhhHHHHH--hc-----CCCCCcccCCccccC
Q 018110 163 EGTECSVCLSEFQEDE----TLRLLPKCNHAFHISCIDTWL--RS-----HTNCPLCRSPIVKIN 216 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~----~~r~lp~C~H~FH~~CI~~Wl--~~-----~~tCP~CR~~l~~~~ 216 (360)
.+.+|.||++...+.. ...++|+|.|.||..||+.|- .+ ...||.||.....+.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 4679999999876533 245678899999999999997 33 467999999876543
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.49 E-value=5.4e-05 Score=58.73 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=36.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 214 (360)
+...|+|+.+.|.+ ..++| +||.|...||..||.. +.+||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 34679999999876 33567 9999999999999998 8899999988765
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=4.1e-05 Score=56.01 Aligned_cols=47 Identities=30% Similarity=0.716 Sum_probs=34.3
Q ss_pred CCcccccCCccccCcceeecCCCCCC-CChhhHH-HHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHA-FHISCID-TWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~-~Wl~~~~tCP~CR~~l~~ 214 (360)
+++|.||++.-.+ .+ +. .|||+ .+.+|-. .|-..+..||+||+++..
T Consensus 7 ~dECTICye~pvd--sV-lY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVD--SV-LY-TCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcch--HH-HH-HcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 4789999987443 33 33 39998 6778854 454578899999999854
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.36 E-value=3.7e-05 Score=81.80 Aligned_cols=52 Identities=21% Similarity=0.530 Sum_probs=43.6
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccccC
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 216 (360)
...|++|+..+.++......+ |+|+||..||..|-+...+||+||..+..+.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 357999999887766555555 9999999999999999999999999886543
No 44
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00012 Score=72.15 Aligned_cols=48 Identities=40% Similarity=0.913 Sum_probs=40.4
Q ss_pred CCCcccccCCccccCcceeecCCCCCC-CChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
...+|.|||.+-. .+.+|| |.|. .|..|.+.---+++.||+||+++..
T Consensus 289 ~gkeCVIClse~r---dt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESR---DTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCc---ceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 4679999999754 467899 9998 7999998876678899999999875
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.24 E-value=7.7e-05 Score=71.92 Aligned_cols=82 Identities=24% Similarity=0.545 Sum_probs=57.6
Q ss_pred CCccccccCCCCHHHHHhhcceEe-----ec----------------CCCCcCCCcccccCCccccCcceeecCCCCCCC
Q 018110 132 HPIWYINTVGLQSSVIREIAVLKY-----KK----------------SDGLVEGTECSVCLSEFQEDETLRLLPKCNHAF 190 (360)
Q Consensus 132 ~~i~~~~~~gl~~~~i~~lp~~~~-----~~----------------~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~F 190 (360)
..+...+.+|+.+..+..|...-. +. .+.......|.|||.-|..++.+.+++ |.|.|
T Consensus 62 Ptvtl~nPRGl~d~~~~~i~~~~~~iikq~~g~pii~~lie~~~e~LT~nn~p~gqCvICLygfa~~~~ft~T~-C~Hy~ 140 (368)
T KOG4445|consen 62 PTVTLSNPRGLGDPEFREIQRQIQEIIKQNSGMPIICQLIEHCSEFLTENNHPNGQCVICLYGFASSPAFTVTA-CDHYM 140 (368)
T ss_pred CceEecCCCCCCcHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHcccCCCCCCceEEEEEeecCCCceeeeh-hHHHH
Confidence 344556678888876666542211 00 122234578999999999999888888 99999
Q ss_pred ChhhHHHHHh-----------------------cCCCCCcccCCccc
Q 018110 191 HISCIDTWLR-----------------------SHTNCPLCRSPIVK 214 (360)
Q Consensus 191 H~~CI~~Wl~-----------------------~~~tCP~CR~~l~~ 214 (360)
|..|+..+|. ....||+||..|..
T Consensus 141 H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 141 HFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 9999987662 12349999999875
No 46
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.06 E-value=0.00056 Score=68.32 Aligned_cols=49 Identities=31% Similarity=0.855 Sum_probs=40.4
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhc--CCCCCcccCCccccCC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRSPIVKINH 217 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~~~ 217 (360)
..|-||-+. ++.+++-| |||..|..|+..|-.. ..+||.||..|...+.
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 469999874 45688888 9999999999999843 6789999999876443
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=6.9e-05 Score=73.69 Aligned_cols=50 Identities=32% Similarity=0.670 Sum_probs=40.8
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCcccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVKI 215 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~ 215 (360)
.+..|+|||+-+.. .+..+.|.|.||.+||..-++ .+++||.||+.+...
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 46789999998764 344457999999999999886 578899999988753
No 48
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00041 Score=69.43 Aligned_cols=50 Identities=32% Similarity=0.844 Sum_probs=37.4
Q ss_pred CCCcccccCCccccCcce-eecCCCCCCCChhhHHHHHhc--CCCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETL-RLLPKCNHAFHISCIDTWLRS--HTNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~-r~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l 212 (360)
.+.+|+|||+.++..-.. ...+.|||.|-..||+.||.+ ...||.|...-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 357899999999864432 233459999999999999952 34599997643
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.99 E-value=0.00021 Score=54.10 Aligned_cols=46 Identities=35% Similarity=0.804 Sum_probs=23.0
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
...|++|.+-+.. .+ .+..|.|+|+..||..-+.. .||+|+.+...
T Consensus 7 lLrCs~C~~~l~~--pv-~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILKE--PV-CLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--SS---B----SSS--B-TTTGGGGTTT--B-SSS--B-S-
T ss_pred hcCCcHHHHHhcC--Cc-eeccCccHHHHHHhHHhcCC--CCCCcCChHHH
Confidence 3569999998765 33 33359999999999886553 49999887644
No 50
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.001 Score=64.42 Aligned_cols=47 Identities=30% Similarity=0.600 Sum_probs=37.6
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 214 (360)
..+|+||+....-. ..|+ |+|.||..||.-=... ..+|++||.++..
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 46899999986543 4566 9999999999876554 5679999999875
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0017 Score=65.89 Aligned_cols=49 Identities=37% Similarity=0.844 Sum_probs=41.8
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
..+.+|.||+..+.. ...+| |||.|+..||++-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 467899999888765 33457 99999999999988888889999999985
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0027 Score=59.24 Aligned_cols=49 Identities=29% Similarity=0.749 Sum_probs=42.0
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc--------CCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS--------HTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~~l~~ 214 (360)
...|..|-..+..++.+|+. |-|+||..|+++|-.. ...||.|..+|++
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 35699999999999999865 9999999999999752 3459999999987
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.33 E-value=0.0015 Score=65.20 Aligned_cols=48 Identities=33% Similarity=0.809 Sum_probs=38.6
Q ss_pred CCcccccCCcccc-CcceeecCCCCCCCChhhHHHHHhcC--CCCCcccCCc
Q 018110 164 GTECSVCLSEFQE-DETLRLLPKCNHAFHISCIDTWLRSH--TNCPLCRSPI 212 (360)
Q Consensus 164 ~~~C~ICl~~~~~-~~~~r~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l 212 (360)
+.-|..|-+.+-. ++.+.-|| |.|+||..|+.+.|..+ .+||.||.-.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3569999988864 44677788 99999999999999764 5699999443
No 54
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0013 Score=58.40 Aligned_cols=30 Identities=30% Similarity=0.769 Sum_probs=27.3
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCCh
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHI 192 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~ 192 (360)
....+|.||||+++.++.+..|| |-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 34579999999999999999999 9999996
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.19 E-value=0.003 Score=64.12 Aligned_cols=53 Identities=26% Similarity=0.694 Sum_probs=43.1
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccccCC
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINH 217 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 217 (360)
.++..|+||...+.+.-.. . .|||.||..|+..|+..+..||.|+..+.....
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhc
Confidence 3567899999998764332 3 499999999999999999999999988876443
No 56
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.18 E-value=0.0014 Score=56.74 Aligned_cols=38 Identities=18% Similarity=0.597 Sum_probs=31.1
Q ss_pred CCcccccCCccccCcceeecCCCC------CCCChhhHHHHHhcC
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCN------HAFHISCIDTWLRSH 202 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~------H~FH~~CI~~Wl~~~ 202 (360)
..+|+||++.+..++.+..++ |+ |+||.+|+.+|-+.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 478999999998866676776 76 999999999995433
No 57
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.002 Score=69.06 Aligned_cols=47 Identities=28% Similarity=0.715 Sum_probs=37.1
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~ 214 (360)
-..|++|-..+.+ .. +++|+|+||..||.+-+. ++..||.|.+.+-+
T Consensus 643 ~LkCs~Cn~R~Kd---~v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AV-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCchhh---HH-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3579999976543 32 335999999999999996 57789999888754
No 58
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.71 E-value=0.0054 Score=45.55 Aligned_cols=42 Identities=21% Similarity=0.642 Sum_probs=27.7
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc--CCCCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS--HTNCPL 207 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~--~~tCP~ 207 (360)
-...|+|.+..|++ .++-.. |+|.|-++.|..||+. ...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 45789999999876 555554 9999999999999944 445998
No 59
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.64 E-value=0.0066 Score=68.71 Aligned_cols=51 Identities=27% Similarity=0.719 Sum_probs=39.4
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-----C-----CCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-----H-----TNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-----~-----~tCP~CR~~l~~ 214 (360)
.++.|.||+.+--.......|. |+|+||..|.+.-|.+ + -.||+|+.++..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 5678999998766666667786 9999999999775543 2 359999998754
No 60
>PHA02862 5L protein; Provisional
Probab=95.14 E-value=0.014 Score=51.08 Aligned_cols=46 Identities=24% Similarity=0.637 Sum_probs=34.8
Q ss_pred CCcccccCCccccCcceeecCCCC-----CCCChhhHHHHHhc--CCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCN-----HAFHISCIDTWLRS--HTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~-----H~FH~~CI~~Wl~~--~~tCP~CR~~l~~ 214 (360)
++.|-||+++-++ .+ -| |. ..-|..|+.+|++. +..|++|+.++.-
T Consensus 2 ~diCWIC~~~~~e--~~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDE--RN--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCC--Cc--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3679999998433 33 34 54 57899999999964 5679999998864
No 61
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.01 E-value=0.011 Score=64.19 Aligned_cols=50 Identities=32% Similarity=0.794 Sum_probs=40.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC-------CCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH-------TNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~-------~tCP~CR~~l 212 (360)
...+|.||++.+...+.+.-...|-|+||..||.+|-+.. -.||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 4479999999998888776666699999999999998631 2499998443
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.96 E-value=0.019 Score=41.25 Aligned_cols=45 Identities=27% Similarity=0.637 Sum_probs=22.2
Q ss_pred ccccCCccccCc-ceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCc
Q 018110 167 CSVCLSEFQEDE-TLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPI 212 (360)
Q Consensus 167 C~ICl~~~~~~~-~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l 212 (360)
|++|.+++...+ .+.-.+ |++..+..|...-+. ....||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 444444 889999999777765 477899999875
No 63
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.94 E-value=0.023 Score=50.57 Aligned_cols=50 Identities=20% Similarity=0.670 Sum_probs=36.3
Q ss_pred cCCCcccccCCccccCcceeecC-CCCC---CCChhhHHHHHhc--CCCCCcccCCcccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLP-KCNH---AFHISCIDTWLRS--HTNCPLCRSPIVKI 215 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp-~C~H---~FH~~CI~~Wl~~--~~tCP~CR~~l~~~ 215 (360)
..+..|-||.++.. +.. .| .|.. .-|.+|+..|+.. ...|++|+.++...
T Consensus 6 ~~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 35678999998843 222 34 2444 5699999999964 55699999988653
No 64
>PHA03096 p28-like protein; Provisional
Probab=94.94 E-value=0.011 Score=57.46 Aligned_cols=46 Identities=26% Similarity=0.665 Sum_probs=33.9
Q ss_pred CcccccCCccccC----cceeecCCCCCCCChhhHHHHHhc---CCCCCcccC
Q 018110 165 TECSVCLSEFQED----ETLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRS 210 (360)
Q Consensus 165 ~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~ 210 (360)
.+|.||++..... ....+|+.|.|.|+..||..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6799999987653 244578889999999999999853 233444443
No 65
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.93 E-value=0.0096 Score=48.47 Aligned_cols=32 Identities=41% Similarity=0.901 Sum_probs=26.9
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCID 196 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~ 196 (360)
++..|++|-..+.. ..+.+.| |||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 46789999999976 5667788 99999999975
No 66
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.028 Score=53.99 Aligned_cols=51 Identities=27% Similarity=0.493 Sum_probs=38.8
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc--CCCCCcccCCcccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRSPIVKI 215 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~ 215 (360)
..+.+|++|-+.-.. ...+.+ |+|+||.-||..=+.. .-+||.|-.+..+.
T Consensus 237 t~~~~C~~Cg~~Pti--P~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTI--PHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred cCCceeeccCCCCCC--Ceeecc-ccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 356899999987544 344455 9999999999986653 46899998887654
No 67
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.053 Score=53.30 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=35.9
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 211 (360)
....|+||+.....+..+- .-|-+||..||-.++..+..||+=-.+
T Consensus 299 ~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 4578999998876543322 268999999999999999999975444
No 68
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.56 E-value=0.023 Score=40.44 Aligned_cols=40 Identities=38% Similarity=1.023 Sum_probs=26.9
Q ss_pred ccccCCccccCcceeecCCCC--C---CCChhhHHHHHh--cCCCCCcc
Q 018110 167 CSVCLSEFQEDETLRLLPKCN--H---AFHISCIDTWLR--SHTNCPLC 208 (360)
Q Consensus 167 C~ICl~~~~~~~~~r~lp~C~--H---~FH~~CI~~Wl~--~~~tCP~C 208 (360)
|-||++.-.... ..+.| |. = ..|..||..|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779998877655 23455 55 3 789999999997 45679987
No 69
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.47 E-value=0.0084 Score=58.82 Aligned_cols=49 Identities=31% Similarity=0.649 Sum_probs=41.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
...+|.+|-.-|.+...+. .|-|.||+.||-+.|....+||.|...+-.
T Consensus 14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 5678999998887755443 499999999999999999999999877654
No 70
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.0044 Score=61.37 Aligned_cols=45 Identities=31% Similarity=0.693 Sum_probs=32.4
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
....|.||+++... ...+| |||+-+ |..-- +....||+||+.+..
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 45789999998765 56677 999966 54432 334559999998753
No 71
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.10 E-value=0.02 Score=59.35 Aligned_cols=51 Identities=22% Similarity=0.578 Sum_probs=38.8
Q ss_pred CCcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-----cCCCCCcccCCccc
Q 018110 160 GLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-----SHTNCPLCRSPIVK 214 (360)
Q Consensus 160 ~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l~~ 214 (360)
...+..+|.+|-++-++ .... .|.|.||.-||.++.. .+.+||.|...+.-
T Consensus 532 enk~~~~C~lc~d~aed---~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED---YIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cccCceeecccCChhhh---hHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 33466799999987543 2234 3999999999999885 35789999888764
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.028 Score=56.75 Aligned_cols=46 Identities=26% Similarity=0.717 Sum_probs=37.1
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc--------CCCCCcccC
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS--------HTNCPLCRS 210 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~ 210 (360)
-..|.||+++......+..+| |+|+||..|+..++.. .-.||-+.-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 468999999987768888998 9999999999999852 234876643
No 73
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=0.063 Score=50.96 Aligned_cols=52 Identities=15% Similarity=0.350 Sum_probs=46.1
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccccC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 216 (360)
..|+||.+.+........|..|||+|..+|+.+.+.....||+|-.++...+
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 5799999999988888778779999999999999999999999988876533
No 74
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.30 E-value=0.04 Score=50.72 Aligned_cols=45 Identities=18% Similarity=0.547 Sum_probs=37.1
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 212 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 212 (360)
...|.||..+|+.. .+. .|||.||..|...-++...+|-+|.+..
T Consensus 196 PF~C~iCKkdy~sp---vvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESP---VVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccch---hhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence 35799999999763 233 4999999999999888999999997654
No 75
>PF15102 TMEM154: TMEM154 protein family
Probab=92.88 E-value=0.039 Score=48.50 Aligned_cols=14 Identities=36% Similarity=0.747 Sum_probs=6.6
Q ss_pred HHHHHHHHhccCCC
Q 018110 96 VVFVKFYLRRRSSS 109 (360)
Q Consensus 96 ~llv~~~~rRr~~~ 109 (360)
++++.+++|+|.++
T Consensus 76 V~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 76 VCLVIYYKRKRTKQ 89 (146)
T ss_pred HHheeEEeecccCC
Confidence 44444555444433
No 76
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.12 Score=51.36 Aligned_cols=50 Identities=22% Similarity=0.614 Sum_probs=41.2
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
.++..|+||.-.- -.....| |+|.=|..||.+.|...+.|=.|+..+...
T Consensus 420 sEd~lCpICyA~p---i~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceeccc---chhhccC-CCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 4678999998652 2334566 999999999999999999999999988753
No 77
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.41 E-value=0.064 Score=37.48 Aligned_cols=41 Identities=24% Similarity=0.710 Sum_probs=23.0
Q ss_pred ccccCCccccCcceeecCCCCCCCChhhHHHHHhcCC--CCCcc
Q 018110 167 CSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHT--NCPLC 208 (360)
Q Consensus 167 C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~--tCP~C 208 (360)
|.+|.+....+..-... .|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67787776665433222 4888999999999998655 79987
No 78
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.33 E-value=0.053 Score=51.24 Aligned_cols=47 Identities=30% Similarity=0.689 Sum_probs=34.1
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccccC
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 216 (360)
.|..|.---. ++...++. |+|+||..|...- ....||+||.++..+.
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRIIQ 51 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccC--Cccccccccceeeeee
Confidence 4777775443 66777776 9999999997652 2238999999965543
No 79
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=0.076 Score=51.59 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=38.0
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
..|-||...|... | +. +|+|.||..|...-++....|++|-+....
T Consensus 242 f~c~icr~~f~~p--V-vt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRP--V-VT-KCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccc--h-hh-cCCceeehhhhccccccCCcceeccccccc
Confidence 5699999999764 2 23 499999999999988999999999776643
No 80
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.42 E-value=0.2 Score=48.04 Aligned_cols=54 Identities=20% Similarity=0.483 Sum_probs=42.4
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccccC
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 216 (360)
.....|+|...+|........+-.|||+|-..+|..- .....||+|-.++...+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCC
Confidence 3557899999999766666666559999999999997 33567999998887543
No 81
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.018 Score=57.71 Aligned_cols=50 Identities=22% Similarity=0.648 Sum_probs=42.8
Q ss_pred CCcccccCCccccC-cceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQED-ETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~-~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
...|+||.+.+... +.+..+- |||.+|..||.+||.....||-||+.+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 35799999999876 5565665 99999999999999998899999998865
No 82
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=0.18 Score=48.82 Aligned_cols=47 Identities=28% Similarity=0.805 Sum_probs=38.2
Q ss_pred CcccccCCccccCc---ceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCc
Q 018110 165 TECSVCLSEFQEDE---TLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPI 212 (360)
Q Consensus 165 ~~C~ICl~~~~~~~---~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l 212 (360)
..|-||-++|...+ ..|.|. |||.|+..|+.+-+.. ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998764 446675 9999999999887764 45699999985
No 83
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=0.14 Score=46.49 Aligned_cols=30 Identities=40% Similarity=1.133 Sum_probs=24.5
Q ss_pred CCCCCCChhhHHHHHhc----C-------CCCCcccCCccc
Q 018110 185 KCNHAFHISCIDTWLRS----H-------TNCPLCRSPIVK 214 (360)
Q Consensus 185 ~C~H~FH~~CI~~Wl~~----~-------~tCP~CR~~l~~ 214 (360)
.||.-||.-|+..||+. + ..||.|-.++..
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 49999999999999963 1 349999888753
No 84
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=89.81 E-value=0.66 Score=31.64 Aligned_cols=29 Identities=14% Similarity=0.459 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 78 LIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 78 lIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
+-|++++++.++++++++++++++++|.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 44445555555555555555555444433
No 85
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=88.95 E-value=0.48 Score=34.88 Aligned_cols=33 Identities=30% Similarity=0.896 Sum_probs=29.7
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCI 195 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI 195 (360)
....|.+|-+.|..++.+.+.|.|+=.+|..|.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 456899999999988889999999999999994
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=88.70 E-value=0.23 Score=36.58 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=31.3
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
..|..|... +..-.++| |+|+.+..|.+-| +-+.||+|-+++...
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 345555432 23345677 9999999997653 667799999988653
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=88.48 E-value=0.33 Score=48.83 Aligned_cols=54 Identities=22% Similarity=0.588 Sum_probs=33.4
Q ss_pred CcCCCcccccCCccccCcceee-------------cCC-----CCCCCChhhHHHHHhc-------------CCCCCccc
Q 018110 161 LVEGTECSVCLSEFQEDETLRL-------------LPK-----CNHAFHISCIDTWLRS-------------HTNCPLCR 209 (360)
Q Consensus 161 ~~~~~~C~ICl~~~~~~~~~r~-------------lp~-----C~H~FH~~CI~~Wl~~-------------~~tCP~CR 209 (360)
..+.+.|--|+..-..-+..+. .+. |.-++|.+|+.+|+.. +-+||+||
T Consensus 268 ~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred ccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 3466789999975432111111 112 4456678999998842 34699999
Q ss_pred CCccc
Q 018110 210 SPIVK 214 (360)
Q Consensus 210 ~~l~~ 214 (360)
+.+--
T Consensus 348 a~FCi 352 (358)
T PF10272_consen 348 AKFCI 352 (358)
T ss_pred cccee
Confidence 98653
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=87.78 E-value=0.28 Score=47.59 Aligned_cols=46 Identities=22% Similarity=0.600 Sum_probs=38.0
Q ss_pred CCcccccCCccccCc-ceeecCCCCCCCChhhHHHHHhcCCCCCcccC
Q 018110 164 GTECSVCLSEFQEDE-TLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS 210 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~-~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 210 (360)
...|+||.+.+-... .+..++ |||.-|..|+......+-+||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 345999999877655 445666 9999999999998877799999988
No 89
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.41 E-value=0.5 Score=47.01 Aligned_cols=52 Identities=27% Similarity=0.574 Sum_probs=39.0
Q ss_pred CCCcCCCcccccCCccccCcceeecCCCCCCCChhhHHHH--HhcCCCCCcccCCccc
Q 018110 159 DGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTW--LRSHTNCPLCRSPIVK 214 (360)
Q Consensus 159 ~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~W--l~~~~tCP~CR~~l~~ 214 (360)
+...+...|.||-+.+. .+-++| |+|..|..|--.- |-..+.||+||.....
T Consensus 56 dtDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 56 DTDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 33345678999998764 456788 9999999996443 4567899999998654
No 90
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=0.27 Score=53.77 Aligned_cols=42 Identities=24% Similarity=0.775 Sum_probs=32.5
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 212 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 212 (360)
..|..|--.++-+ .+... |||.||.+|+. .....||-|+..+
T Consensus 841 skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchhh
Confidence 5899998887653 33343 99999999998 4566799998743
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.73 E-value=0.38 Score=47.73 Aligned_cols=53 Identities=21% Similarity=0.492 Sum_probs=37.3
Q ss_pred CCCcccccCCccccCcc-eeecCCCCCCCChhhHHHHHh-cCCCCCcccCCccccC
Q 018110 163 EGTECSVCLSEFQEDET-LRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVKIN 216 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~-~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 216 (360)
+++.|+.|++++...++ ..-.| ||...|.-|...--+ -+..||-||+.+...+
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 45669999999987663 44555 998777777433222 3677999999876543
No 92
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.25 E-value=0.31 Score=53.64 Aligned_cols=35 Identities=23% Similarity=0.627 Sum_probs=28.2
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWL 199 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl 199 (360)
.++.|.+|...+... ...+-| |||.||.+||.+-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 568999999888654 556677 99999999997654
No 93
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.11 E-value=0.13 Score=49.98 Aligned_cols=44 Identities=27% Similarity=0.739 Sum_probs=30.9
Q ss_pred CCcccccCCccccCcceeecCCCCCCC-ChhhHHHHHhcCCCCCcccCCcccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAF-HISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~F-H~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
...|+||++.-. ....|+ |||.. |..|=.. -..||+||+-+..+
T Consensus 300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~rv 344 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKR----MNECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHhcCCc---ceEEee-cCcEEeehhhccc----cccCchHHHHHHHH
Confidence 457999998643 356787 99974 5556322 34799999987653
No 94
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.70 E-value=0.6 Score=45.62 Aligned_cols=43 Identities=33% Similarity=0.770 Sum_probs=33.0
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHh-cCCCCCcccC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRS 210 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~ 210 (360)
..|+.|..-+.. .++. |-|+|.||.+||..-|. ....||.|.+
T Consensus 275 LkCplc~~Llrn--p~kT-~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN--PMKT-PCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC--cccC-ccccchHHHHHHhhhhhhccccCCCccc
Confidence 679999877654 3333 55999999999998764 5678999954
No 95
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=85.63 E-value=1.1 Score=36.35 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=29.5
Q ss_pred cccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018110 56 SLIPTPSPVTFKYHVHHKSRKFLIITASALATTIVAVLCYVVFVKFY 102 (360)
Q Consensus 56 ~~~~~pp~~~~~~~~~~~~s~ilIiii~iL~~v~llll~~~llv~~~ 102 (360)
.+++|+-|+.++.++...++.++.++|++++.+.++-+.+.+++|=+
T Consensus 16 ~y~~P~~p~~~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDl 62 (91)
T PF01708_consen 16 SYQTPRVPTAAPSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDL 62 (91)
T ss_pred cccCCCCCCCCCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 33444333344556677777777777777777777777777766633
No 96
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=85.00 E-value=0.33 Score=47.57 Aligned_cols=45 Identities=31% Similarity=0.747 Sum_probs=31.4
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
-|--|--.+. -.-|+.| |+|+||.+|-.. ...+.||.|-..+..+
T Consensus 92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 4666644432 3457888 999999999654 3466899997776553
No 97
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=84.50 E-value=0.35 Score=52.57 Aligned_cols=47 Identities=23% Similarity=0.730 Sum_probs=36.5
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhc--CCCCCcccCCccccC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRSPIVKIN 216 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~~ 216 (360)
..|.||++ .+...+.+ |+|.|+..|+..-+.. ..-||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 34455565 9999999999887753 335999999887643
No 98
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=83.42 E-value=1.2 Score=39.80 Aligned_cols=37 Identities=22% Similarity=0.556 Sum_probs=22.1
Q ss_pred CCCcccccCCccccCccee---------ecCCCCC-CCChhhHHHHHh
Q 018110 163 EGTECSVCLSEFQEDETLR---------LLPKCNH-AFHISCIDTWLR 200 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r---------~lp~C~H-~FH~~CI~~Wl~ 200 (360)
++..|+|||+--.....+. -.- |+- .=|..||+++-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHH
Confidence 3568999998755422111 111 443 347889999863
No 99
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.11 E-value=0.36 Score=34.55 Aligned_cols=29 Identities=28% Similarity=0.890 Sum_probs=22.0
Q ss_pred CC-CCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 186 CN-HAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 186 C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
|. |..+..|+...|.+...||+|..+++.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 66 999999999999999999999998864
No 100
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.69 E-value=0.7 Score=50.17 Aligned_cols=23 Identities=39% Similarity=0.973 Sum_probs=21.2
Q ss_pred CCCCCCChhhHHHHHhcCCCCCc
Q 018110 185 KCNHAFHISCIDTWLRSHTNCPL 207 (360)
Q Consensus 185 ~C~H~FH~~CI~~Wl~~~~tCP~ 207 (360)
.|+|+-|..|.+.|++....||-
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999984
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=82.53 E-value=0.37 Score=54.97 Aligned_cols=46 Identities=26% Similarity=0.728 Sum_probs=37.4
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 212 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 212 (360)
...|.||++.+.....+. .|||.|+..|+..|+..+..||+|+...
T Consensus 1153 ~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 358999999887433332 3999999999999999999999998443
No 102
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=81.11 E-value=2 Score=42.20 Aligned_cols=13 Identities=0% Similarity=0.209 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 018110 91 AVLCYVVFVKFYL 103 (360)
Q Consensus 91 lll~~~llv~~~~ 103 (360)
+++++.+++||++
T Consensus 271 IMvIIYLILRYRR 283 (299)
T PF02009_consen 271 IMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444443
No 103
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=80.65 E-value=3.4 Score=36.50 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=4.3
Q ss_pred HHHHHHhccC
Q 018110 98 FVKFYLRRRS 107 (360)
Q Consensus 98 lv~~~~rRr~ 107 (360)
++.+|.+|++
T Consensus 48 li~lcssRKk 57 (189)
T PF05568_consen 48 LIYLCSSRKK 57 (189)
T ss_pred HHHHHhhhhH
Confidence 3334444443
No 104
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=80.62 E-value=4 Score=42.62 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=10.4
Q ss_pred CC-hhhHHHHHhcCC
Q 018110 190 FH-ISCIDTWLRSHT 203 (360)
Q Consensus 190 FH-~~CI~~Wl~~~~ 203 (360)
|| +.++..||+.+.
T Consensus 289 fh~kGsL~dyL~~nt 303 (534)
T KOG3653|consen 289 FHPKGSLCDYLKANT 303 (534)
T ss_pred eccCCcHHHHHHhcc
Confidence 55 458999998764
No 105
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=1.1 Score=47.49 Aligned_cols=45 Identities=31% Similarity=0.891 Sum_probs=38.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
....|.||++++ ..+..+ |. |..|+.+|+..+..||+|+..+...
T Consensus 478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKED 522 (543)
T ss_pred ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcc
Confidence 457899999987 455666 88 9999999999999999999887653
No 106
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=80.03 E-value=3.8 Score=45.08 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=21.1
Q ss_pred ccccCchhhhHHHhhcccCCCCCCCCCCccccccccc
Q 018110 285 SVSLDSLSASKMIHALGNFDPEETTRNSDTQLAKERY 321 (360)
Q Consensus 285 s~S~ds~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (360)
-||||-=+.+-+=|+.-+.-.+...|+-|.-++.+++
T Consensus 634 FVSLDGr~nA~VRHSyIDLq~~~r~~snDaSLDSGVD 670 (807)
T PF10577_consen 634 FVSLDGRSNAQVRHSYIDLQRGGRNGSNDASLDSGVD 670 (807)
T ss_pred EEecCCCcchheehhhhhhhhcccCCCccCCCCCCcc
Confidence 6777777777666665554444444544444443333
No 107
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.47 E-value=1.2 Score=41.55 Aligned_cols=40 Identities=38% Similarity=0.846 Sum_probs=29.0
Q ss_pred ccccCCccccCcceeecCCCCCC-CChhhHHHHHhcCCCCCcccCCccc
Q 018110 167 CSVCLSEFQEDETLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 167 C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
|-.|-+. ...+..+| |.|+ +|..|=.. -.+||+|+.+...
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 8888764 45688898 9986 77778433 4569999987643
No 108
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=79.07 E-value=1.9 Score=36.95 Aligned_cols=8 Identities=25% Similarity=0.110 Sum_probs=3.5
Q ss_pred HHHHHHhc
Q 018110 98 FVKFYLRR 105 (360)
Q Consensus 98 lv~~~~rR 105 (360)
+.+.++|+
T Consensus 22 ~~rRR~r~ 29 (130)
T PF12273_consen 22 HNRRRRRR 29 (130)
T ss_pred HHHHHhhc
Confidence 34444444
No 109
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=78.76 E-value=3 Score=37.50 Aligned_cols=7 Identities=43% Similarity=1.483 Sum_probs=4.6
Q ss_pred CCC----cccC
Q 018110 24 ICP----SYCD 30 (360)
Q Consensus 24 ~~~----~~~~ 30 (360)
.|+ .||=
T Consensus 20 ~C~~~~~~~CC 30 (179)
T PF13908_consen 20 NCPEGDFTFCC 30 (179)
T ss_pred cCCCcCcceec
Confidence 577 6665
No 110
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=78.49 E-value=2.5 Score=41.18 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q 018110 87 TTIVAVLCYVVFVKFYLRRRSS 108 (360)
Q Consensus 87 ~v~llll~~~llv~~~~rRr~~ 108 (360)
++++.|++++++++.|+||+.+
T Consensus 268 llil~vvliiLYiWlyrrRK~s 289 (295)
T TIGR01478 268 LIILTVVLIILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 3334444445555556665543
No 111
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.33 E-value=0.61 Score=49.80 Aligned_cols=44 Identities=20% Similarity=0.543 Sum_probs=32.4
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSP 211 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 211 (360)
..|.||+..|......-+.+.|||..|..|+..- .+.+|| |+.+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence 4699999888765544334459999999999874 466788 6443
No 112
>PTZ00370 STEVOR; Provisional
Probab=77.66 E-value=2.6 Score=41.11 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC
Q 018110 86 ATTIVAVLCYVVFVKFYLRRRSS 108 (360)
Q Consensus 86 ~~v~llll~~~llv~~~~rRr~~ 108 (360)
++++++|++++++++.|+||+.+
T Consensus 263 vllil~vvliilYiwlyrrRK~s 285 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRRKNS 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcch
Confidence 33334444445555556665543
No 113
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.52 E-value=0.88 Score=43.87 Aligned_cols=51 Identities=29% Similarity=0.832 Sum_probs=37.8
Q ss_pred CCcccccCCccccCcc-eeecCCCC-----CCCChhhHHHHHh--cCCCCCcccCCcccc
Q 018110 164 GTECSVCLSEFQEDET-LRLLPKCN-----HAFHISCIDTWLR--SHTNCPLCRSPIVKI 215 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~-~r~lp~C~-----H~FH~~CI~~Wl~--~~~tCP~CR~~l~~~ 215 (360)
+..|-||.++...... ....| |. +..|..|++.|+. ....|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999997654331 23444 55 6789999999997 566799998877653
No 114
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.14 E-value=0.98 Score=43.29 Aligned_cols=52 Identities=21% Similarity=0.655 Sum_probs=36.4
Q ss_pred cCCCcccccCCccccCcce-eecCCCC-----CCCChhhHHHHHhc--------CCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETL-RLLPKCN-----HAFHISCIDTWLRS--------HTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~-r~lp~C~-----H~FH~~CI~~Wl~~--------~~tCP~CR~~l~~ 214 (360)
..+..|-||+..=+++-.- -+-| |. |-.|..||..|+.. ..+||.|+..+..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 3567899999875553322 2334 54 88999999999953 2359999998754
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=76.38 E-value=5.1 Score=34.37 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=8.9
Q ss_pred CCCcc--hhHHHHHHHHHHHHH
Q 018110 71 HHKSR--KFLIITASALATTIV 90 (360)
Q Consensus 71 ~~~~s--~ilIiii~iL~~v~l 90 (360)
.++|+ .+..|++++++.+++
T Consensus 58 ~h~fs~~~i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 58 VHRFSEPAIIGIIFGVMAGVIG 79 (122)
T ss_dssp SSSSS-TCHHHHHHHHHHHHHH
T ss_pred ccCccccceeehhHHHHHHHHH
Confidence 44555 334444444444433
No 116
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=75.86 E-value=2.2 Score=29.56 Aligned_cols=30 Identities=13% Similarity=0.380 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018110 78 LIITASALATTIVAVLCYVVFVKFYLRRRS 107 (360)
Q Consensus 78 lIiii~iL~~v~llll~~~llv~~~~rRr~ 107 (360)
+|++++++.++.+.++..+++-||.-|++.
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw~aRkr~ 39 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKWQARKRA 39 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555566667777666654
No 117
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=75.25 E-value=1.9 Score=47.24 Aligned_cols=53 Identities=25% Similarity=0.656 Sum_probs=38.6
Q ss_pred CCCcccccCCccccCcceeecC-CCC---CCCChhhHHHHHhc--CCCCCcccCCccccC
Q 018110 163 EGTECSVCLSEFQEDETLRLLP-KCN---HAFHISCIDTWLRS--HTNCPLCRSPIVKIN 216 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp-~C~---H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~~ 216 (360)
++..|-||..+=..++.+- -| +|. ...|.+|+.+|+.- ...|-+|+.++.-.+
T Consensus 11 d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred cchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 4578999998866665553 33 233 46899999999974 445999999886543
No 118
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=74.11 E-value=1.3 Score=36.56 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 75 RKFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 75 s~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
+...++++++++++.+++++++++..+..|.|
T Consensus 59 ~~~~iili~lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 59 NNGNIILISLLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred ccccchHHHHHHHHHHHHHHhhheEEEEEecc
Confidence 34455555555555555555555433333333
No 119
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.38 E-value=1.4 Score=44.75 Aligned_cols=38 Identities=29% Similarity=0.723 Sum_probs=28.0
Q ss_pred CCCcccccCCccccC-cceeecCCCCCCCChhhHHHHHhc
Q 018110 163 EGTECSVCLSEFQED-ETLRLLPKCNHAFHISCIDTWLRS 201 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~-~~~r~lp~C~H~FH~~CI~~Wl~~ 201 (360)
...+|.||+.++... +..... .|+|.|+.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 467899999444433 444444 59999999999998863
No 120
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=71.49 E-value=2.6 Score=41.50 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=33.8
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
+-.+|+||.+.+.. .+.+.. =||+-|..|-. +....||.||.++..+
T Consensus 47 ~lleCPvC~~~l~~--Pi~QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSP--PIFQCD-NGHLACSSCRT---KVSNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcc--cceecC-CCcEehhhhhh---hhcccCCccccccccH
Confidence 44689999999876 344333 35777777743 4677899999998753
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.21 E-value=3.7 Score=44.80 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=32.1
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPL 207 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~ 207 (360)
..|.+|-..+.. .....+.|+|.-|..|+.+|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 478899765532 33455679999999999999998888876
No 122
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=70.16 E-value=3.2 Score=40.47 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=35.1
Q ss_pred cccccCCcccc-CcceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCcccc
Q 018110 166 ECSVCLSEFQE-DETLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPIVKI 215 (360)
Q Consensus 166 ~C~ICl~~~~~-~~~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 215 (360)
.|++|..+.-- .+...+...|+|..|..|++.-+.. ...||.|-..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 48899765433 3322222249999999999999875 45699998777553
No 123
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=69.73 E-value=1.4 Score=41.87 Aligned_cols=51 Identities=29% Similarity=0.616 Sum_probs=37.4
Q ss_pred CCCcccccCCcccc--CcceeecCCCCCCCChhhHHHHHhcCC-CCC--cccCCcc
Q 018110 163 EGTECSVCLSEFQE--DETLRLLPKCNHAFHISCIDTWLRSHT-NCP--LCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~--~~~~r~lp~C~H~FH~~CI~~Wl~~~~-tCP--~CR~~l~ 213 (360)
.+..|+||..+--- +-.+.+-|.|-|..|..|++.-|.... .|| -|-.-+-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 45689999876433 234455677999999999999997654 599 7855443
No 124
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.17 E-value=2.3 Score=41.52 Aligned_cols=29 Identities=24% Similarity=0.655 Sum_probs=22.4
Q ss_pred CCCCCChhhHHHHHh-------------cCCCCCcccCCccc
Q 018110 186 CNHAFHISCIDTWLR-------------SHTNCPLCRSPIVK 214 (360)
Q Consensus 186 C~H~FH~~CI~~Wl~-------------~~~tCP~CR~~l~~ 214 (360)
|.-++|.+|+.+|+. .+-+||+||+.+-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 556778899999883 34579999998754
No 125
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=67.27 E-value=7 Score=39.28 Aligned_cols=7 Identities=0% Similarity=0.401 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 018110 97 VFVKFYL 103 (360)
Q Consensus 97 llv~~~~ 103 (360)
+++||++
T Consensus 331 LILRYRR 337 (353)
T TIGR01477 331 LILRYRR 337 (353)
T ss_pred HHHHhhh
Confidence 3334433
No 126
>PTZ00046 rifin; Provisional
Probab=66.15 E-value=7.4 Score=39.20 Aligned_cols=6 Identities=0% Similarity=0.589 Sum_probs=2.4
Q ss_pred HHHHHH
Q 018110 97 VFVKFY 102 (360)
Q Consensus 97 llv~~~ 102 (360)
+++||+
T Consensus 336 LILRYR 341 (358)
T PTZ00046 336 LILRYR 341 (358)
T ss_pred HHHHhh
Confidence 333443
No 127
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=65.63 E-value=4.8 Score=37.23 Aligned_cols=41 Identities=41% Similarity=0.927 Sum_probs=29.9
Q ss_pred CCCcccccCCc-----cccCcceeecCCCCCCCChhhHHHHHhcCCCCCccc
Q 018110 163 EGTECSVCLSE-----FQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 209 (360)
Q Consensus 163 ~~~~C~ICl~~-----~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 209 (360)
.+..|.||-++ |+. +.+...++|+-+||..|.. ...||-|-
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 35789999753 333 3556677899999999965 26799994
No 128
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=65.47 E-value=3.4 Score=45.34 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=39.6
Q ss_pred CCCcccccCCccccCc---ceeecCCCCCCCChhhHHHHHhc------CCCCCcccCCccccCCCCC
Q 018110 163 EGTECSVCLSEFQEDE---TLRLLPKCNHAFHISCIDTWLRS------HTNCPLCRSPIVKINHAAR 220 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~---~~r~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~~~~~~~ 220 (360)
+...|.||.-++...+ .+-.+.+|+|.||..||..|+.+ +..|++|..-|......+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq 161 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ 161 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc
Confidence 3467888877776622 22233369999999999999853 4468999887765443333
No 129
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=65.39 E-value=2.7 Score=30.17 Aligned_cols=43 Identities=23% Similarity=0.658 Sum_probs=21.0
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhc---C--CCCCcccCC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS---H--TNCPLCRSP 211 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~---~--~tCP~CR~~ 211 (360)
..|+|....+.. .+|... |.|.-+.+ +..||.. . -.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 358888887755 566665 99985443 5567643 2 249999764
No 130
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=64.73 E-value=4.6 Score=35.15 Aligned_cols=51 Identities=20% Similarity=0.478 Sum_probs=35.3
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHh---cCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR---SHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~~l~~ 214 (360)
-.+|.||.|.-.+..-++----||-..+..|-..-++ .+..||+|+..+..
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3689999988655332221113898888888655443 47789999999865
No 131
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=64.59 E-value=2.1 Score=45.61 Aligned_cols=44 Identities=30% Similarity=0.712 Sum_probs=27.9
Q ss_pred CCCcccccC-----CccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccC
Q 018110 163 EGTECSVCL-----SEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS 210 (360)
Q Consensus 163 ~~~~C~ICl-----~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 210 (360)
....|.+|- -.|+.....+.. .|+++||..|+.. ....||-|-+
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCchHH
Confidence 456788883 233322233334 4999999999543 5555999943
No 132
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=63.69 E-value=1.7 Score=47.04 Aligned_cols=48 Identities=40% Similarity=0.820 Sum_probs=36.6
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc---CCCCCcccCCcccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRSPIVKI 215 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~~~ 215 (360)
..+|+||+..+... ..+ +|.|.|+..|+..-|.. ...||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 46899999998775 223 59999999998776643 45699999877653
No 133
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=63.68 E-value=2.3 Score=41.66 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccC
Q 018110 94 CYVVFVKFYLRRRS 107 (360)
Q Consensus 94 ~~~llv~~~~rRr~ 107 (360)
++.+++.+|+||||
T Consensus 161 IA~iIa~icyrrkR 174 (290)
T PF05454_consen 161 IAGIIACICYRRKR 174 (290)
T ss_dssp --------------
T ss_pred HHHHHHHHhhhhhh
Confidence 34444444444444
No 134
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.55 E-value=4.5 Score=25.24 Aligned_cols=23 Identities=30% Similarity=0.772 Sum_probs=15.1
Q ss_pred cccccCCccccCcceeecCCCCCCC
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAF 190 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~F 190 (360)
.|+-|...+.. ..+..|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 47777777543 445566688877
No 135
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=61.76 E-value=5 Score=35.37 Aligned_cols=28 Identities=29% Similarity=0.776 Sum_probs=16.6
Q ss_pred cCCCCcccCCCCCCCCCCCCCcccCCccccccc
Q 018110 22 ADICPSYCDLSDTSSFCSPPCLTSCPSYCHNFL 54 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~c~~~cp~~~~~~~ 54 (360)
+++|...|+ .+|-+.|...=|-+|+.+.
T Consensus 24 a~~~~a~C~-----~dC~~~Ccd~~~~~Ccsy~ 51 (155)
T PF10873_consen 24 ADRCLAQCG-----KDCTSYCCDGTTPYCCSYY 51 (155)
T ss_pred hhhHHHHhc-----ccccceecCCCCcchhchh
Confidence 456777777 5565555555566665433
No 136
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=60.43 E-value=7 Score=27.77 Aligned_cols=24 Identities=38% Similarity=0.945 Sum_probs=15.1
Q ss_pred ccCCCCcccCCCCCCCCCCC--CCcccCCccccc
Q 018110 21 TADICPSYCDLSDTSSFCSP--PCLTSCPSYCHN 52 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~--~c~~~cp~~~~~ 52 (360)
....|-.+|- +..||+. +| +||++
T Consensus 4 ~~~tCn~~C~---t~sDC~g~tlC-----~~C~k 29 (46)
T PF02977_consen 4 ILGTCNKYCN---TNSDCSGITLC-----QWCWK 29 (46)
T ss_dssp S-TTTT-B-S---SSCCCTTSSSS------EE-C
T ss_pred cccccCCccc---cCccccceeeh-----HHHHh
Confidence 3457888887 6678999 99 99974
No 138
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=60.21 E-value=18 Score=29.29 Aligned_cols=9 Identities=44% Similarity=0.545 Sum_probs=3.6
Q ss_pred HHHHHHhcc
Q 018110 98 FVKFYLRRR 106 (360)
Q Consensus 98 lv~~~~rRr 106 (360)
++++..|+|
T Consensus 52 fvCC~kRkr 60 (94)
T PF05393_consen 52 FVCCKKRKR 60 (94)
T ss_pred HHHHHHhhh
Confidence 333444443
No 139
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=60.04 E-value=4.2 Score=38.01 Aligned_cols=44 Identities=30% Similarity=0.741 Sum_probs=34.8
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSP 211 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 211 (360)
..|.+|..-.-.+ +|.- .|+-.+|..|+.+.+++...||.|..-
T Consensus 182 k~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchhcc
Confidence 5799999876543 3333 488999999999999999999999443
No 140
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=59.29 E-value=14 Score=31.67 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=6.4
Q ss_pred cchhHHHHHHHHHHHHH
Q 018110 74 SRKFLIITASALATTIV 90 (360)
Q Consensus 74 ~s~ilIiii~iL~~v~l 90 (360)
+-.|++.+++.++.+++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 33333333333333334
No 141
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=59.11 E-value=7.8 Score=24.84 Aligned_cols=36 Identities=22% Similarity=0.623 Sum_probs=24.2
Q ss_pred ccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCc
Q 018110 167 CSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 212 (360)
Q Consensus 167 C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 212 (360)
|..|-+.+...+..... =+..||..|+ .|..|+.+|
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcC
Confidence 78888887765333222 3678998874 577777665
No 142
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=59.10 E-value=6.5 Score=28.62 Aligned_cols=42 Identities=33% Similarity=0.827 Sum_probs=22.2
Q ss_pred ccccCCccccCc------ceeecCCCCCCCChhhHHHHH-hcCCCCCccc
Q 018110 167 CSVCLSEFQEDE------TLRLLPKCNHAFHISCIDTWL-RSHTNCPLCR 209 (360)
Q Consensus 167 C~ICl~~~~~~~------~~r~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR 209 (360)
|.-|+..|.... .....|+|++.|+.+| |.++ ..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 566777776642 4556778999999999 3332 2345699883
No 143
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=58.39 E-value=7.1 Score=36.63 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018110 75 RKFLIITASALATTIVAVLCYVVFVKFYLRR 105 (360)
Q Consensus 75 s~ilIiii~iL~~v~llll~~~llv~~~~rR 105 (360)
..|+|.+|+.++.+++++ +++.++|+|+.+
T Consensus 37 ~~I~iaiVAG~~tVILVI-~i~v~vR~CRq~ 66 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVI-FIVVLVRYCRQS 66 (221)
T ss_pred eeeeeeeecchhhhHHHH-HHHHHHHHHhhc
Confidence 345555444444444333 334455666533
No 144
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=57.81 E-value=5.4 Score=38.56 Aligned_cols=49 Identities=29% Similarity=0.632 Sum_probs=36.3
Q ss_pred CcccccCCccccCcceeec---CCCCCCCChhhHHHHHh---------cCCCCCcccCCcc
Q 018110 165 TECSVCLSEFQEDETLRLL---PKCNHAFHISCIDTWLR---------SHTNCPLCRSPIV 213 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~l---p~C~H~FH~~CI~~Wl~---------~~~tCP~CR~~l~ 213 (360)
.+|-+|.+++.+.+..+.. +.|+-.+|..|+..-+. ....||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 6899999999655554432 36889999999999542 1346999988654
No 145
>PF15050 SCIMP: SCIMP protein
Probab=57.71 E-value=20 Score=30.66 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=2.7
Q ss_pred HHHHhcc
Q 018110 100 KFYLRRR 106 (360)
Q Consensus 100 ~~~~rRr 106 (360)
|+.+|+.
T Consensus 32 R~~lRqG 38 (133)
T PF15050_consen 32 RWQLRQG 38 (133)
T ss_pred HHHHHcc
Confidence 3443333
No 146
>PTZ00370 STEVOR; Provisional
Probab=56.93 E-value=13 Score=36.42 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=26.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 73 KSRKFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 73 ~~s~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
.|.|+-|..+++|+++++++++|+++.|.+++..
T Consensus 253 aF~Pygiaalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 253 AFYPYGIAALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 3667778888888888888888888888776543
No 147
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=56.89 E-value=13 Score=36.33 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=26.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 73 KSRKFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 73 ~~s~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
.|.|+-|..+++|+++++++++|+++.|.+++..
T Consensus 257 aF~Pcgiaalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 257 TFLPYGIAALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3667778888888888888888888888776544
No 148
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.98 E-value=8.5 Score=39.12 Aligned_cols=44 Identities=18% Similarity=0.492 Sum_probs=36.9
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCC---CCCcc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHT---NCPLC 208 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~---tCP~C 208 (360)
-..|||=.+.-.+......|. |||+..++-|.+-.+... -||.|
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 367999998887777888887 999999999999876544 49999
No 149
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=55.95 E-value=30 Score=26.39 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=6.0
Q ss_pred cccCCccccccC
Q 018110 114 LNETHDDFLDED 125 (360)
Q Consensus 114 ~~~~~~~~~d~~ 125 (360)
....+.+..|++
T Consensus 42 ~~t~HPELLD~~ 53 (65)
T PF11189_consen 42 KVTIHPELLDEN 53 (65)
T ss_pred CCCCCcccCCCC
Confidence 333455555553
No 150
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=55.52 E-value=23 Score=41.43 Aligned_cols=13 Identities=0% Similarity=-0.015 Sum_probs=10.0
Q ss_pred CCCChhhHHHHHh
Q 018110 188 HAFHISCIDTWLR 200 (360)
Q Consensus 188 H~FH~~CI~~Wl~ 200 (360)
-+|..+=++.|++
T Consensus 397 ~Vl~~e~L~~v~~ 409 (1204)
T TIGR00917 397 PVLDDDNLKLLFD 409 (1204)
T ss_pred ccCCHHHHHHHHH
Confidence 4788888888874
No 151
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=53.94 E-value=12 Score=36.37 Aligned_cols=31 Identities=32% Similarity=0.338 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
+++|-+.+.|+++|+++++.+++.++++||.
T Consensus 229 VVlIslAiALG~v~ll~l~Gii~~~~~r~~~ 259 (281)
T PF12768_consen 229 VVLISLAIALGTVFLLVLIGIILAYIRRRRQ 259 (281)
T ss_pred EEEEehHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455566666677666666666655555444
No 152
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=53.22 E-value=17 Score=30.34 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 82 ASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 82 i~iL~~v~llll~~~llv~~~~rRr 106 (360)
++++++++++++++.++.+...+|+
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq 28 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQ 28 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444333333
No 153
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.21 E-value=17 Score=30.75 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=33.8
Q ss_pred CCcccccCCccccC----------cceeecCCCCCCCChhhHHHHHhcCCCCCccc
Q 018110 164 GTECSVCLSEFQED----------ETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 209 (360)
Q Consensus 164 ~~~C~ICl~~~~~~----------~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 209 (360)
...|.-|+..|... ......++|++.|+.+|=.-+-..-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45699999988643 12234667999999999555556667799985
No 154
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=53.11 E-value=9 Score=38.59 Aligned_cols=29 Identities=7% Similarity=-0.050 Sum_probs=18.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 018110 71 HHKSRKFLIITASALATTIVAVLCYVVFV 99 (360)
Q Consensus 71 ~~~~s~ilIiii~iL~~v~llll~~~llv 99 (360)
...||+++|+++++-+.+-++++++..+.
T Consensus 312 ~d~~S~lvi~i~~vgLG~P~l~li~Ggl~ 340 (350)
T PF15065_consen 312 VDSFSPLVIMIMAVGLGVPLLLLILGGLY 340 (350)
T ss_pred ccchhHHHHHHHHHHhhHHHHHHHHhhhe
Confidence 34577888877776666666655554443
No 155
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.91 E-value=5.7 Score=43.59 Aligned_cols=44 Identities=18% Similarity=0.501 Sum_probs=31.8
Q ss_pred CCCcccccCCccccC----cceeecCCCCCCCChhhHHHHHhcCCCCCcc
Q 018110 163 EGTECSVCLSEFQED----ETLRLLPKCNHAFHISCIDTWLRSHTNCPLC 208 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~C 208 (360)
.+..|.-|.+..... ..+.++- |+|+||..|+..-..++. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 345899999887532 3566675 999999999987765554 5555
No 156
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=51.71 E-value=6.6 Score=36.31 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=15.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018110 73 KSRKFLIITASALATTIVAVLCYVVFVKFYLRRRS 107 (360)
Q Consensus 73 ~~s~ilIiii~iL~~v~llll~~~llv~~~~rRr~ 107 (360)
++.+=+||.|.+-++++++.++..+++|+|.-|..
T Consensus 95 Glavh~~iTITvSlImViaAliTtlvlK~C~~~s~ 129 (205)
T PF15298_consen 95 GLAVHQIITITVSLIMVIAALITTLVLKNCCAQSQ 129 (205)
T ss_pred CCCceEEEEEeeehhHHHHHhhhhhhhhhhhhhhc
Confidence 33333343333333333444445555666654443
No 157
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.66 E-value=21 Score=37.23 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhcc
Q 018110 90 VAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 90 llll~~~llv~~~~rRr 106 (360)
++++++.++++++.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~ 161 (513)
T KOG2052|consen 145 LLIAILTVLGCFYRKRR 161 (513)
T ss_pred HHHHHHHHheeeeeeec
Confidence 33333444444444443
No 158
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=51.23 E-value=13 Score=42.62 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018110 75 RKFLIITASALATTIVAVLCYVVFVKF 101 (360)
Q Consensus 75 s~ilIiii~iL~~v~llll~~~llv~~ 101 (360)
-+++||++++|+.+++|+++.++++|+
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhc
Confidence 366777777777777777777777664
No 159
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=50.28 E-value=23 Score=33.57 Aligned_cols=7 Identities=0% Similarity=0.036 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 018110 97 VFVKFYL 103 (360)
Q Consensus 97 llv~~~~ 103 (360)
-|+|.|+
T Consensus 209 gLyr~C~ 215 (259)
T PF07010_consen 209 GLYRMCW 215 (259)
T ss_pred HHHHHhh
Confidence 3334443
No 160
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=49.95 E-value=8.2 Score=27.00 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=28.4
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHh------cCCCCCccc
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR------SHTNCPLCR 209 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~------~~~tCP~CR 209 (360)
.|.||...-.. ..+..--.|+-.||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDD-GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTT-SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCC-CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 38899984433 34445556999999999865432 133588775
No 161
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=48.88 E-value=6.9 Score=33.71 Aligned_cols=27 Identities=26% Similarity=0.128 Sum_probs=2.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018110 74 SRKFLIITASALATTIVAVLCYVVFVK 100 (360)
Q Consensus 74 ~s~ilIiii~iL~~v~llll~~~llv~ 100 (360)
+..+.+|..+++++++++.++..+++.
T Consensus 75 ~~l~~pi~~sal~v~lVl~llsg~lv~ 101 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLALLSGFLVW 101 (129)
T ss_dssp SSSS-----------------------
T ss_pred cceehhhhhhHHHHHHHHHHHHHHHHH
Confidence 345666767777777665555544443
No 162
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.36 E-value=9.6 Score=39.36 Aligned_cols=36 Identities=22% Similarity=0.668 Sum_probs=29.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS 201 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~ 201 (360)
....|-||.+.+.. .+..+. |+|.|+..|....+..
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 45789999999876 444555 9999999999998853
No 163
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=47.34 E-value=6.1 Score=30.09 Aligned_cols=17 Identities=12% Similarity=0.563 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHhcc
Q 018110 90 VAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 90 llll~~~llv~~~~rRr 106 (360)
++++++++++.|+.|++
T Consensus 23 l~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 23 LFAILLILFLIYRMRKK 39 (64)
T ss_dssp --------------S--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33333334444444443
No 164
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=47.25 E-value=11 Score=25.27 Aligned_cols=26 Identities=31% Similarity=0.751 Sum_probs=16.3
Q ss_pred cccccCCccccCcc-------eeecCCCCCCCC
Q 018110 166 ECSVCLSEFQEDET-------LRLLPKCNHAFH 191 (360)
Q Consensus 166 ~C~ICl~~~~~~~~-------~r~lp~C~H~FH 191 (360)
.|+-|...|...+. ....++|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57888777765442 233456888775
No 165
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=46.95 E-value=53 Score=36.31 Aligned_cols=34 Identities=24% Similarity=0.691 Sum_probs=19.4
Q ss_pred cCCCCcccCCCCCCCCCCC--CCcccC-CcccccccccccCC
Q 018110 22 ADICPSYCDLSDTSSFCSP--PCLTSC-PSYCHNFLQSLIPT 60 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~--~c~~~c-p~~~~~~~~~~~~~ 60 (360)
...|+..|. .-+-|.. .| .| |.|=..+|.+.+.-
T Consensus 625 ~~~~~~~C~---g~GVCnn~~~C--hC~~gwapp~C~~~~~~ 661 (716)
T KOG3607|consen 625 SSCCPTTCN---GHGVCNNELNC--HCEPGWAPPFCFIFGYG 661 (716)
T ss_pred ccccccccC---CCcccCCCcce--eeCCCCCCCccccccCC
Confidence 345777776 2344555 44 34 66766666665555
No 166
>PF12669 P12: Virus attachment protein p12 family
Probab=45.68 E-value=21 Score=26.55 Aligned_cols=6 Identities=33% Similarity=0.285 Sum_probs=2.4
Q ss_pred HHHHHh
Q 018110 99 VKFYLR 104 (360)
Q Consensus 99 v~~~~r 104 (360)
.+++++
T Consensus 18 r~~~k~ 23 (58)
T PF12669_consen 18 RKFIKD 23 (58)
T ss_pred HHHHHH
Confidence 344433
No 167
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=45.16 E-value=16 Score=39.45 Aligned_cols=16 Identities=31% Similarity=0.119 Sum_probs=7.7
Q ss_pred hcccCCCCCCCCCCcc
Q 018110 299 ALGNFDPEETTRNSDT 314 (360)
Q Consensus 299 ~~~~~~~~~~~~~~~~ 314 (360)
|+..=-..||.+|.-+
T Consensus 505 ALkqKSdIEHyRNKlR 520 (684)
T PF12877_consen 505 ALKQKSDIEHYRNKLR 520 (684)
T ss_pred HhhhhhhHHHHHHHHH
Confidence 4444444555555443
No 168
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=44.51 E-value=38 Score=30.08 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018110 78 LIITASALATTIVAVLCYVVFVKFYLRR 105 (360)
Q Consensus 78 lIiii~iL~~v~llll~~~llv~~~~rR 105 (360)
+|+.+.+.+++.+++++++++-.+..||
T Consensus 121 lilaisvtvv~~iliii~CLiei~shr~ 148 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLIEICSHRR 148 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444444444444444444444344433
No 169
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=44.45 E-value=30 Score=30.70 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 81 TASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 81 ii~iL~~v~llll~~~llv~~~~rRr 106 (360)
++++++.++++++++.++.+..+++.
T Consensus 35 LiaIvVliiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 35 LIAIVVLIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33333334444444444544444444
No 170
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.74 E-value=21 Score=35.54 Aligned_cols=49 Identities=22% Similarity=0.655 Sum_probs=35.8
Q ss_pred CcccccCCccccCcc-eeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 165 TECSVCLSEFQEDET-LRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~-~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
..|+||.+.....+. ..-.| |++..|..|+..-...+..||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCcccc
Confidence 689999998854443 23334 78887777877777788999999966543
No 171
>PF15102 TMEM154: TMEM154 protein family
Probab=43.37 E-value=9.8 Score=33.62 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 83 SALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 83 ~iL~~v~llll~~~llv~~~~rRr 106 (360)
++|+++++++++++++.|..+.++
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCC
Confidence 344444455555555555544444
No 172
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=43.12 E-value=34 Score=32.50 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhccC
Q 018110 93 LCYVVFVKFYLRRRS 107 (360)
Q Consensus 93 l~~~llv~~~~rRr~ 107 (360)
+.+++++-+|+--++
T Consensus 202 l~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 202 LSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHhhc
Confidence 334455555555554
No 173
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=43.08 E-value=32 Score=27.63 Aligned_cols=8 Identities=0% Similarity=0.127 Sum_probs=5.1
Q ss_pred Cccccccc
Q 018110 47 PSYCHNFL 54 (360)
Q Consensus 47 p~~~~~~~ 54 (360)
|+|-|-+-
T Consensus 10 ~~~~YEYY 17 (90)
T PF15183_consen 10 YYWSYEYY 17 (90)
T ss_pred cceeeeeh
Confidence 57877544
No 174
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.02 E-value=12 Score=38.03 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=32.9
Q ss_pred CCcccccCCccccCc--ceeecCCCCCCCChhhHHHHHhcCCCCCcc
Q 018110 164 GTECSVCLSEFQEDE--TLRLLPKCNHAFHISCIDTWLRSHTNCPLC 208 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~--~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~C 208 (360)
-..|++|.-.++..+ ...... |+|.|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 457888876655433 344555 99999999999999888888665
No 175
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=42.36 E-value=17 Score=24.27 Aligned_cols=26 Identities=27% Similarity=0.691 Sum_probs=16.0
Q ss_pred cccccCCccccCcc-------eeecCCCCCCCC
Q 018110 166 ECSVCLSEFQEDET-------LRLLPKCNHAFH 191 (360)
Q Consensus 166 ~C~ICl~~~~~~~~-------~r~lp~C~H~FH 191 (360)
+|+=|...|..++. ....++|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57778877765442 123445888774
No 176
>PHA02650 hypothetical protein; Provisional
Probab=42.30 E-value=51 Score=26.17 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 018110 87 TTIVAVLCYVVFVKFY 102 (360)
Q Consensus 87 ~v~llll~~~llv~~~ 102 (360)
+++++++++.++.+..
T Consensus 58 ~v~i~~l~~flYLK~~ 73 (81)
T PHA02650 58 SLIIVALFSFFVFKGY 73 (81)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333444444444
No 177
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=41.48 E-value=52 Score=28.05 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
.++-.+|+.|+++.+..+....+++.+.||.
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~ 114 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALLRRCCRRA 114 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665555443
No 178
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=41.03 E-value=7.8 Score=31.91 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=25.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018110 71 HHKSRKFLIITASALATTIVAVLCYVVFVKFYLRRRS 107 (360)
Q Consensus 71 ~~~~s~ilIiii~iL~~v~llll~~~llv~~~~rRr~ 107 (360)
....+.++|++++++++++++.+++.+++..-+++..
T Consensus 58 ~~~~~iili~lls~v~IlVily~IyYFVILRer~~~~ 94 (101)
T PF06024_consen 58 QNNGNIILISLLSFVCILVILYAIYYFVILRERQKSI 94 (101)
T ss_pred cccccchHHHHHHHHHHHHHHhhheEEEEEecccccc
Confidence 4566777888788877777777777666655555553
No 179
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=40.55 E-value=41 Score=31.61 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 018110 78 LIITASALATT 88 (360)
Q Consensus 78 lIiii~iL~~v 88 (360)
++|++++|+++
T Consensus 130 mLIClIIIAVL 140 (227)
T PF05399_consen 130 MLICLIIIAVL 140 (227)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 180
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.06 E-value=37 Score=25.24 Aligned_cols=46 Identities=24% Similarity=0.614 Sum_probs=32.9
Q ss_pred cccccCCccccCc-ceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 166 ECSVCLSEFQEDE-TLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 166 ~C~ICl~~~~~~~-~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.|-.|-.++..+. ..++.. =...|+.+|.+.-| +..||.|-..++.
T Consensus 7 nCE~C~~dLp~~s~~A~ICS-fECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICS-FECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEe-EeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 4777777776655 334322 23579999999976 7789999888765
No 181
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.40 E-value=26 Score=33.75 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=38.8
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
...|+|=--+|........+-.|||+|-..-+.+. ...+|++|.+.+...
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 46799998888776666556569999998887764 477899999887653
No 182
>PLN02189 cellulose synthase
Probab=39.38 E-value=44 Score=38.27 Aligned_cols=54 Identities=19% Similarity=0.554 Sum_probs=39.4
Q ss_pred CCCcccccCCccc---cCcceeecCCCCCCCChhhHHHHH-hcCCCCCcccCCccccC
Q 018110 163 EGTECSVCLSEFQ---EDETLRLLPKCNHAFHISCIDTWL-RSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 163 ~~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~~ 216 (360)
....|.||-+++. +++..+-...|+--.|..|.+-=- ..++.||.|+..+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 3468999999875 345555566688889999984322 24778999999988644
No 183
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=39.13 E-value=14 Score=27.62 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=19.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTW 198 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~W 198 (360)
+...|.+|...|..-..-.....||++|+..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 457899999999765444445569999999987544
No 184
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.72 E-value=58 Score=24.04 Aligned_cols=26 Identities=8% Similarity=-0.054 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018110 78 LIITASALATTIVAVLCYVVFVKFYL 103 (360)
Q Consensus 78 lIiii~iL~~v~llll~~~llv~~~~ 103 (360)
.+++++.+++.+++..++.+...+..
T Consensus 21 ~l~il~~f~~G~llg~l~~~~~~~~~ 46 (68)
T PF06305_consen 21 GLLILIAFLLGALLGWLLSLPSRLRL 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444433333
No 185
>PF14979 TMEM52: Transmembrane 52
Probab=37.37 E-value=64 Score=28.61 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018110 79 IITASALATTIVAVLCYVVFVKFYLRRRS 107 (360)
Q Consensus 79 Iiii~iL~~v~llll~~~llv~~~~rRr~ 107 (360)
|.++.++++++++-.+....+|||..||+
T Consensus 22 IwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 22 IWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444444555555666775554443
No 186
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=36.73 E-value=24 Score=36.15 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 78 LIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 78 lIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
-+|++++|+.+++|+++.+.++.+.+|||
T Consensus 386 ~~i~~avl~p~~il~~~~~~~~~~v~rrr 414 (436)
T PTZ00208 386 AMIILAVLVPAIILAIIAVAFFIMVKRRR 414 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeecc
Confidence 34555556555555544443433444444
No 187
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=35.63 E-value=52 Score=32.49 Aligned_cols=27 Identities=19% Similarity=0.296 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 80 ITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 80 iii~iL~~v~llll~~~llv~~~~rRr 106 (360)
.+++.++++++++++++++..+++.||
T Consensus 257 ~I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 257 AIIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555544444444444
No 188
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.53 E-value=55 Score=26.00 Aligned_cols=54 Identities=17% Similarity=0.457 Sum_probs=21.4
Q ss_pred CCCcccccCCcccc---CcceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCccccC
Q 018110 163 EGTECSVCLSEFQE---DETLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVKIN 216 (360)
Q Consensus 163 ~~~~C~ICl~~~~~---~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 216 (360)
....|-||-+++-. ++.......|+--.+..|..-=.+ .++.||-|+.++....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 45689999988753 444444445777788888765443 5778999998887543
No 189
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=35.06 E-value=76 Score=35.94 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=3.8
Q ss_pred CCCcccCC
Q 018110 24 ICPSYCDL 31 (360)
Q Consensus 24 ~~~~~~~~ 31 (360)
.||+-|-.
T Consensus 570 ~CP~G~~G 577 (1177)
T KOG1025|consen 570 DCPDGVTG 577 (1177)
T ss_pred cCCCcccC
Confidence 45544444
No 190
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=34.85 E-value=59 Score=26.17 Aligned_cols=33 Identities=9% Similarity=0.039 Sum_probs=16.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 74 SRKFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 74 ~s~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
++++++-+++.-+.+++++.+...++.+|.|.+
T Consensus 12 lp~~~yyiiA~gga~llL~~v~l~vvL~C~r~~ 44 (87)
T PF11980_consen 12 LPPYWYYIIAMGGALLLLVAVCLGVVLYCHRFH 44 (87)
T ss_pred CCceeeHHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence 445555555555444444444434444554444
No 191
>PF15179 Myc_target_1: Myc target protein 1
Probab=34.41 E-value=63 Score=29.71 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKFYLRR 105 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~~~rR 105 (360)
.|+.+.+.+++.+++-.++++++.+..+||
T Consensus 21 lIlaF~vSm~iGLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 21 LILAFCVSMAIGLVIGALIWALLTWLSRRR 50 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455556666666555556666665555333
No 192
>PHA02844 putative transmembrane protein; Provisional
Probab=34.15 E-value=53 Score=25.75 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 018110 91 AVLCYVVFVK 100 (360)
Q Consensus 91 lll~~~llv~ 100 (360)
+++++.++.+
T Consensus 61 ~~~~~flYLK 70 (75)
T PHA02844 61 ATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHh
Confidence 3333334433
No 193
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=34.05 E-value=23 Score=35.88 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhcc
Q 018110 92 VLCYVVFVKFYLRRR 106 (360)
Q Consensus 92 ll~~~llv~~~~rRr 106 (360)
++.++++.+++++|+
T Consensus 313 l~~~~~~~~~~~~~~ 327 (361)
T PF12259_consen 313 LISLAWLYRTFRRRQ 327 (361)
T ss_pred HHHHHhheeehHHHH
Confidence 333344444444433
No 194
>PLN02436 cellulose synthase A
Probab=33.53 E-value=55 Score=37.62 Aligned_cols=54 Identities=20% Similarity=0.568 Sum_probs=39.3
Q ss_pred CCCcccccCCccc---cCcceeecCCCCCCCChhhHHHHH-hcCCCCCcccCCccccC
Q 018110 163 EGTECSVCLSEFQ---EDETLRLLPKCNHAFHISCIDTWL-RSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 163 ~~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~~ 216 (360)
....|.||-+++. +++...-...|+--.|..|.+-=- ..++.||.|++.+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 3458999999863 455555566688889999984322 24678999999987544
No 195
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=33.41 E-value=33 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=25.0
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHH
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWL 199 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl 199 (360)
..|.+|-..|..-..-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46899988887644333444699999999976543
No 196
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=33.40 E-value=56 Score=29.45 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 018110 95 YVVFVKFYL 103 (360)
Q Consensus 95 ~~llv~~~~ 103 (360)
++|++|.++
T Consensus 110 ~yfvir~~R 118 (163)
T PF06679_consen 110 LYFVIRTFR 118 (163)
T ss_pred HHHHHHHHh
Confidence 334444443
No 197
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.35 E-value=64 Score=24.87 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 018110 81 TASALATTIVAVLCY 95 (360)
Q Consensus 81 ii~iL~~v~llll~~ 95 (360)
++++++++++.++++
T Consensus 6 iLi~ICVaii~lIlY 20 (68)
T PF05961_consen 6 ILIIICVAIIGLILY 20 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 198
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=33.17 E-value=36 Score=29.58 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhcc
Q 018110 93 LCYVVFVKFYLRRR 106 (360)
Q Consensus 93 l~~~llv~~~~rRr 106 (360)
.++.++.+|++||+
T Consensus 117 ~~~~~~yr~~r~~~ 130 (139)
T PHA03099 117 CCLLSVYRFTRRTK 130 (139)
T ss_pred HHHHhhheeeeccc
Confidence 33333444444443
No 199
>PRK01844 hypothetical protein; Provisional
Probab=33.13 E-value=1e+02 Score=24.11 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018110 78 LIITASALATTIVAVLCYVV 97 (360)
Q Consensus 78 lIiii~iL~~v~llll~~~l 97 (360)
++|+++++++++-+++-+++
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 200
>PF15069 FAM163: FAM163 family
Probab=32.66 E-value=67 Score=28.33 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 81 TASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 81 ii~iL~~v~llll~~~llv~~~~rRr 106 (360)
+..++++.|+++++++-|..|+.++.
T Consensus 13 LAtVILLcIIaVLCYCRLQYYCCKK~ 38 (143)
T PF15069_consen 13 LATVILLCIIAVLCYCRLQYYCCKKN 38 (143)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcc
Confidence 33333444444445544444444443
No 201
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=32.26 E-value=62 Score=33.17 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 78 LIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 78 lIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
+++.+.+++.++.++++++++++.|.+|+
T Consensus 21 ~la~v~~~~l~l~Ll~ll~yl~~~CC~r~ 49 (406)
T PF04906_consen 21 ILASVAAACLALSLLFLLIYLICRCCCRR 49 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 33444444444445444555555554444
No 202
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=32.17 E-value=94 Score=24.36 Aligned_cols=7 Identities=14% Similarity=0.567 Sum_probs=2.6
Q ss_pred HHHHhcc
Q 018110 100 KFYLRRR 106 (360)
Q Consensus 100 ~~~~rRr 106 (360)
.|..+++
T Consensus 25 HY~~k~~ 31 (75)
T TIGR02976 25 HYRSKRK 31 (75)
T ss_pred HHHhhhc
Confidence 3333333
No 203
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=32.03 E-value=66 Score=29.53 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=5.7
Q ss_pred CChhhHHHHH
Q 018110 190 FHISCIDTWL 199 (360)
Q Consensus 190 FH~~CI~~Wl 199 (360)
-..+-+..||
T Consensus 124 ~~G~~~R~~L 133 (186)
T PF07406_consen 124 LPGENFRSYL 133 (186)
T ss_pred cccccHHHHH
Confidence 3345566676
No 204
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=30.83 E-value=24 Score=36.55 Aligned_cols=32 Identities=34% Similarity=0.733 Sum_probs=25.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTW 198 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~W 198 (360)
++..|+||..-|.+ ..+|| |+|..|..|-..-
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNI 34 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhh
Confidence 56789999988865 45787 9999999887643
No 205
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=30.50 E-value=1e+02 Score=21.67 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 018110 92 VLCYVVFVKFY 102 (360)
Q Consensus 92 ll~~~llv~~~ 102 (360)
++++.+++..+
T Consensus 20 ~~F~gi~~w~~ 30 (49)
T PF05545_consen 20 VFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 206
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=30.20 E-value=28 Score=26.75 Aligned_cols=12 Identities=33% Similarity=1.068 Sum_probs=8.7
Q ss_pred CCChhhHHHHHh
Q 018110 189 AFHISCIDTWLR 200 (360)
Q Consensus 189 ~FH~~CI~~Wl~ 200 (360)
-||..||.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 207
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=29.44 E-value=84 Score=32.11 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018110 77 FLIITASALATTIVAVLCYVVFVKFYL 103 (360)
Q Consensus 77 ilIiii~iL~~v~llll~~~llv~~~~ 103 (360)
+++.+.+.+++++++++++ .++.+++
T Consensus 297 f~~tfaIpl~Valll~~~L-a~imc~r 322 (449)
T KOG4482|consen 297 FLHTFAIPLGVALLLVLAL-AYIMCCR 322 (449)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhh
Confidence 3443333444444443333 3333443
No 208
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=28.89 E-value=26 Score=32.95 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018110 75 RKFLIITASALATTIVAVLCYVVFVKFYLRRRSSSE 110 (360)
Q Consensus 75 s~ilIiii~iL~~v~llll~~~llv~~~~rRr~~~~ 110 (360)
+-++-|+|++++.+ +.++++++++.+.+++|++.+
T Consensus 34 ~d~~~I~iaiVAG~-~tVILVI~i~v~vR~CRq~~~ 68 (221)
T PF08374_consen 34 KDYVKIMIAIVAGI-MTVILVIFIVVLVRYCRQSPH 68 (221)
T ss_pred ccceeeeeeeecch-hhhHHHHHHHHHHHHHhhccc
Confidence 56888877777765 455566666666655665544
No 210
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.88 E-value=6.1 Score=35.15 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018110 77 FLIITASALATTIVAVLCYVVFVKFYLRRRS 107 (360)
Q Consensus 77 ilIiii~iL~~v~llll~~~llv~~~~rRr~ 107 (360)
++|-+++-+.++++++ ++++++.||+|+++
T Consensus 50 IVIGvVVGVGg~ill~-il~lvf~~c~r~kk 79 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLG-ILALVFIFCIRRKK 79 (154)
T ss_pred EEEEEEecccHHHHHH-HHHhheeEEEeccc
Confidence 4444444444444433 33344445555443
No 211
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=28.75 E-value=1e+02 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
.++.|++++.++.|+++.+++-++|-.++..
T Consensus 43 ~~lYIL~vmgfFgff~~gImlsyvRSKK~E~ 73 (129)
T PF02060_consen 43 EYLYILVVMGFFGFFTVGIMLSYVRSKKREH 73 (129)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4555555655666666655555555444333
No 212
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=28.62 E-value=44 Score=21.03 Aligned_cols=29 Identities=17% Similarity=0.502 Sum_probs=10.9
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhH
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCI 195 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI 195 (360)
.|.+|...... .....-+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 48888887765 344445569999999985
No 213
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.49 E-value=26 Score=24.80 Aligned_cols=38 Identities=21% Similarity=0.547 Sum_probs=25.9
Q ss_pred ccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 167 CSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 167 C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
|+.|-..+...+.+... -+..||..|+ .|-.|+.+|..
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPECF--------KCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTTS--------BETTTTCBTTT
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEcccc--------ccCCCCCccCC
Confidence 67788887765544222 5778888773 68888877754
No 214
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=28.29 E-value=13 Score=31.54 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=0.0
Q ss_pred HHHHHHHHhcc
Q 018110 96 VVFVKFYLRRR 106 (360)
Q Consensus 96 ~llv~~~~rRr 106 (360)
.++-+|+.|||
T Consensus 40 LliGCWYckRR 50 (118)
T PF14991_consen 40 LLIGCWYCKRR 50 (118)
T ss_dssp -----------
T ss_pred HHHhheeeeec
Confidence 33444554444
No 215
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=28.14 E-value=47 Score=33.23 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=40.6
Q ss_pred CCCHHHHHhhcceEeecCCCC--cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCccc
Q 018110 141 GLQSSVIREIAVLKYKKSDGL--VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 209 (360)
Q Consensus 141 gl~~~~i~~lp~~~~~~~~~~--~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 209 (360)
.|.++.---+|...+...... .....|-.|.++.......+- ..|.|.||.+|=.---..-..||-|.
T Consensus 305 hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C-~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 305 HLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRC-ESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred HHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEc-hhccceeeccchHHHHhhhhcCCCcC
Confidence 344444444555444443222 234569999777766555544 45999999999322223445799996
No 216
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.97 E-value=23 Score=34.96 Aligned_cols=49 Identities=22% Similarity=0.568 Sum_probs=39.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
....|-||...+...... - .|.|.|+..|...|......||.|+....+
T Consensus 104 ~~~~~~~~~g~l~vpt~~--q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI--Q-GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeEEecccc--c-CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 456899999887654333 2 499999999999999999999999876544
No 217
>PRK14710 hypothetical protein; Provisional
Probab=27.60 E-value=42 Score=26.12 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=11.6
Q ss_pred CCcchhHHHHHHHHHHHHHHH
Q 018110 72 HKSRKFLIITASALATTIVAV 92 (360)
Q Consensus 72 ~~~s~ilIiii~iL~~v~lll 92 (360)
.+++..+|.+++++.++++.+
T Consensus 6 sn~skm~ififaiii~v~lcv 26 (86)
T PRK14710 6 SNLSKMIIFIFAIIIIVVLCV 26 (86)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 455666666666555444443
No 218
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=27.59 E-value=20 Score=25.84 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=15.8
Q ss_pred cceeecCCCCCCCChhhHHHH
Q 018110 178 ETLRLLPKCNHAFHISCIDTW 198 (360)
Q Consensus 178 ~~~r~lp~C~H~FH~~CI~~W 198 (360)
......+.|+|.|+..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 344555569999999998887
No 219
>PHA03291 envelope glycoprotein I; Provisional
Probab=27.12 E-value=42 Score=33.88 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=19.4
Q ss_pred CCcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018110 72 HKSRKFLII---TASALATTIVAVLCYVVFVKFYLRRRSS 108 (360)
Q Consensus 72 ~~~s~ilIi---ii~iL~~v~llll~~~llv~~~~rRr~~ 108 (360)
.+++..-|| |=+.|++.+++-.|++++.++++||++.
T Consensus 281 ~~Lt~~qiiQiAIPasii~cV~lGSC~Ccl~R~~rRr~r~ 320 (401)
T PHA03291 281 YELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRR 320 (401)
T ss_pred hhhhhhhhheeccchHHHHHhhhhhhhhhhhhhhhcccCC
Confidence 344444443 3344444445555666676766666543
No 220
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=27.05 E-value=41 Score=29.86 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 018110 78 LIITASAL 85 (360)
Q Consensus 78 lIiii~iL 85 (360)
+||++.+|
T Consensus 58 VIivl~Vi 65 (149)
T PF05434_consen 58 VIIVLWVI 65 (149)
T ss_pred EEEeHHHH
Confidence 33333333
No 221
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=26.83 E-value=1.4e+02 Score=22.87 Aligned_cols=24 Identities=0% Similarity=0.210 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 018110 82 ASALATTIVAVLCYVVFVKFYLRR 105 (360)
Q Consensus 82 i~iL~~v~llll~~~llv~~~~rR 105 (360)
++.++++|++++++.+++....+-
T Consensus 9 i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 9 IIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555
No 222
>PHA03049 IMV membrane protein; Provisional
Probab=26.51 E-value=94 Score=23.90 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 018110 83 SALATTIVAVLCY 95 (360)
Q Consensus 83 ~iL~~v~llll~~ 95 (360)
++++++++.+++|
T Consensus 8 ~iICVaIi~lIvY 20 (68)
T PHA03049 8 VIICVVIIGLIVY 20 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 223
>PLN02400 cellulose synthase
Probab=26.51 E-value=76 Score=36.59 Aligned_cols=54 Identities=15% Similarity=0.460 Sum_probs=37.7
Q ss_pred CCCcccccCCccc---cCcceeecCCCCCCCChhhHHH-HHhcCCCCCcccCCccccC
Q 018110 163 EGTECSVCLSEFQ---EDETLRLLPKCNHAFHISCIDT-WLRSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 163 ~~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~CI~~-Wl~~~~tCP~CR~~l~~~~ 216 (360)
....|.||-+++. +++...-...|+---|..|.+= .-..++.||.|+..+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 3468999999875 3444454556887899999732 1124678999999988643
No 224
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.33 E-value=78 Score=28.07 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=19.9
Q ss_pred HHhhcceEeecCCCCcCCCcccccCCcc
Q 018110 147 IREIAVLKYKKSDGLVEGTECSVCLSEF 174 (360)
Q Consensus 147 i~~lp~~~~~~~~~~~~~~~C~ICl~~~ 174 (360)
+..+-.++|+.-++...+..-++++-+-
T Consensus 80 ~~kvgvvRYnAF~dmGg~LSFslAlLD~ 107 (151)
T PF14584_consen 80 VQKVGVVRYNAFEDMGGDLSFSLALLDD 107 (151)
T ss_pred cceEEEEEccCcccccccceeeeEEEeC
Confidence 3445577788777777778888888664
No 225
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.25 E-value=47 Score=31.30 Aligned_cols=8 Identities=38% Similarity=0.285 Sum_probs=3.5
Q ss_pred ccCchhhh
Q 018110 287 SLDSLSAS 294 (360)
Q Consensus 287 S~ds~s~~ 294 (360)
++|..|.+
T Consensus 144 ~y~~~S~D 151 (217)
T PF07423_consen 144 TYDSGSVD 151 (217)
T ss_pred cccCCCcC
Confidence 34444444
No 226
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=25.75 E-value=1.9e+02 Score=21.65 Aligned_cols=9 Identities=22% Similarity=0.733 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 018110 95 YVVFVKFYL 103 (360)
Q Consensus 95 ~~llv~~~~ 103 (360)
+.+++|...
T Consensus 23 Ftl~IRri~ 31 (58)
T PF13314_consen 23 FTLFIRRIL 31 (58)
T ss_pred HHHHHHHHH
Confidence 334444443
No 227
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=25.71 E-value=47 Score=23.87 Aligned_cols=25 Identities=36% Similarity=0.925 Sum_probs=14.6
Q ss_pred cCCCCCCCChhhHHHHHhcCCCCCcc
Q 018110 183 LPKCNHAFHISCIDTWLRSHTNCPLC 208 (360)
Q Consensus 183 lp~C~H~FH~~CI~~Wl~~~~tCP~C 208 (360)
.+.|||.|-.. |..-......||.|
T Consensus 31 C~~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 31 CPKCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCCCeeEcc-HhhhccCCCCCCCC
Confidence 34577777654 22222456679988
No 228
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=25.53 E-value=62 Score=32.30 Aligned_cols=50 Identities=24% Similarity=0.596 Sum_probs=33.6
Q ss_pred CCcccccCCcccc---------------Cc-ceeecCCCCCCCChhhHHHHHhc---------CCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQE---------------DE-TLRLLPKCNHAFHISCIDTWLRS---------HTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~---------------~~-~~r~lp~C~H~FH~~CI~~Wl~~---------~~tCP~CR~~l~~ 214 (360)
+.+|++|+..=.- +- .....| |||+--..=+.-|-+. +..||.|-..+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 5789999864210 11 112345 9999888888889752 4569999887754
No 229
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=38 Score=33.23 Aligned_cols=38 Identities=16% Similarity=0.481 Sum_probs=28.4
Q ss_pred CCcccccCCccccCcceeecC-CCCCCCChhhHHHHHhcC
Q 018110 164 GTECSVCLSEFQEDETLRLLP-KCNHAFHISCIDTWLRSH 202 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp-~C~H~FH~~CI~~Wl~~~ 202 (360)
-..|.+|.|.+++..-|. .| -=.|.||..|-++-++.+
T Consensus 268 pLcCTLC~ERLEDTHFVQ-CPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhhhhccCceee-cCCCcccceecccCHHHHHhh
Confidence 368999999998765552 22 225999999999988753
No 230
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=25.47 E-value=76 Score=29.86 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=4.3
Q ss_pred hhHHHHHHHHH
Q 018110 76 KFLIITASALA 86 (360)
Q Consensus 76 ~ilIiii~iL~ 86 (360)
.+.+|+|++|+
T Consensus 131 LIClIIIAVLf 141 (227)
T PF05399_consen 131 LICLIIIAVLF 141 (227)
T ss_pred HHHHHHHHHHH
Confidence 44333344333
No 231
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=25.36 E-value=41 Score=32.88 Aligned_cols=9 Identities=22% Similarity=0.179 Sum_probs=4.0
Q ss_pred HHHHHHhcc
Q 018110 98 FVKFYLRRR 106 (360)
Q Consensus 98 lv~~~~rRr 106 (360)
|+..++|++
T Consensus 292 Yli~Rrr~~ 300 (306)
T PF01299_consen 292 YLIGRRRSR 300 (306)
T ss_pred heeEecccc
Confidence 333445444
No 232
>PRK05978 hypothetical protein; Provisional
Probab=25.24 E-value=51 Score=29.20 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=19.4
Q ss_pred CCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 187 NHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 187 ~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
|++|+ .+|+.+..||.|-.++...
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccC
Confidence 37776 6889999999998888653
No 233
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=24.61 E-value=25 Score=35.97 Aligned_cols=43 Identities=28% Similarity=0.651 Sum_probs=0.0
Q ss_pred CcccccCCcccc-----------CcceeecCCCCCCCChhhHHHHHh------cCCCCCcccCC
Q 018110 165 TECSVCLSEFQE-----------DETLRLLPKCNHAFHISCIDTWLR------SHTNCPLCRSP 211 (360)
Q Consensus 165 ~~C~ICl~~~~~-----------~~~~r~lp~C~H~FH~~CI~~Wl~------~~~tCP~CR~~ 211 (360)
..|++=|..+.- .+....+. |||++-. ..|-. ...+||+||..
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~-CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLN-CGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeecc-ccceeee---cccccccccccccccCCCcccc
Confidence 457766654432 22334454 9998765 36863 24579999874
No 234
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=23.84 E-value=44 Score=32.79 Aligned_cols=7 Identities=29% Similarity=0.776 Sum_probs=3.3
Q ss_pred ccCCccc
Q 018110 44 TSCPSYC 50 (360)
Q Consensus 44 ~~cp~~~ 50 (360)
+.-|||=
T Consensus 219 p~S~QYv 225 (305)
T PF04639_consen 219 PDSPQYV 225 (305)
T ss_pred CCCcccc
Confidence 3445554
No 235
>PRK00523 hypothetical protein; Provisional
Probab=23.57 E-value=1.9e+02 Score=22.60 Aligned_cols=14 Identities=7% Similarity=-0.040 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 018110 78 LIITASALATTIVA 91 (360)
Q Consensus 78 lIiii~iL~~v~ll 91 (360)
++|+++++++++-+
T Consensus 6 l~I~l~i~~li~G~ 19 (72)
T PRK00523 6 LALGLGIPLLIVGG 19 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 236
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=23.53 E-value=1.2e+02 Score=35.08 Aligned_cols=54 Identities=17% Similarity=0.463 Sum_probs=38.7
Q ss_pred CCCcccccCCccc---cCcceeecCCCCCCCChhhHHHH-HhcCCCCCcccCCccccC
Q 018110 163 EGTECSVCLSEFQ---EDETLRLLPKCNHAFHISCIDTW-LRSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 163 ~~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~CI~~W-l~~~~tCP~CR~~l~~~~ 216 (360)
....|.||-+++. +++...-...|+---|..|.+== -..++.||.|++.+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 3458999999875 34555555568888999998421 235778999999988544
No 237
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.77 E-value=1.9e+02 Score=22.50 Aligned_cols=18 Identities=22% Similarity=0.063 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018110 78 LIITASALATTIVAVLCY 95 (360)
Q Consensus 78 lIiii~iL~~v~llll~~ 95 (360)
+.|+++++++++.+++-+
T Consensus 5 lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 5 LAILLIVLALLAGLIGGF 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444333333
No 238
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=22.43 E-value=1.5e+02 Score=25.19 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=9.5
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 018110 75 RKFLIITASALATTIVAVLCY 95 (360)
Q Consensus 75 s~ilIiii~iL~~v~llll~~ 95 (360)
+.|++.++++|.+-+.++.+.
T Consensus 61 ~lffvglii~LivSLaLVsFv 81 (128)
T PF15145_consen 61 SLFFVGLIIVLIVSLALVSFV 81 (128)
T ss_pred eehHHHHHHHHHHHHHHHHHH
Confidence 344554444444444444333
No 239
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.29 E-value=60 Score=24.81 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=11.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHH
Q 018110 71 HHKSRKFLIITASALATTIVAV 92 (360)
Q Consensus 71 ~~~~s~ilIiii~iL~~v~lll 92 (360)
..++++=+|+++++..++++++
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~fl 28 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLVFL 28 (69)
T ss_pred ccCCCCCeEEeehHHHHHHHHH
Confidence 3556665665555544444333
No 240
>PF15050 SCIMP: SCIMP protein
Probab=22.28 E-value=1.4e+02 Score=25.69 Aligned_cols=8 Identities=0% Similarity=-0.325 Sum_probs=3.5
Q ss_pred HHHHhccC
Q 018110 100 KFYLRRRS 107 (360)
Q Consensus 100 ~~~~rRr~ 107 (360)
+.|++..|
T Consensus 29 CvcR~~lR 36 (133)
T PF15050_consen 29 CVCRWQLR 36 (133)
T ss_pred HHHHHHHH
Confidence 44544443
No 241
>PTZ00046 rifin; Provisional
Probab=22.21 E-value=1.2e+02 Score=30.64 Aligned_cols=17 Identities=35% Similarity=0.381 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhcc
Q 018110 90 VAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 90 llll~~~llv~~~~rRr 106 (360)
+++++.+++..+.+.||
T Consensus 326 VIVLIMvIIYLILRYRR 342 (358)
T PTZ00046 326 VIVLIMVIIYLILRYRR 342 (358)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33333344433343444
No 242
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=22.17 E-value=1.2e+02 Score=30.56 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHhcc
Q 018110 91 AVLCYVVFVKFYLRRR 106 (360)
Q Consensus 91 lll~~~llv~~~~rRr 106 (360)
++++++++..+.+.||
T Consensus 322 IVLIMvIIYLILRYRR 337 (353)
T TIGR01477 322 IVLIMVIIYLILRYRR 337 (353)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3333334433333333
No 243
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=22.13 E-value=1.3e+02 Score=27.72 Aligned_cols=8 Identities=25% Similarity=0.364 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 018110 96 VVFVKFYL 103 (360)
Q Consensus 96 ~llv~~~~ 103 (360)
++++|||+
T Consensus 178 ff~~KF~k 185 (186)
T PF05283_consen 178 FFLYKFCK 185 (186)
T ss_pred HHHhhhcc
Confidence 34446653
No 244
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=22.07 E-value=53 Score=35.19 Aligned_cols=34 Identities=21% Similarity=0.591 Sum_probs=24.1
Q ss_pred CCCcccccCCcccc-----------CcceeecCCCCCCCChhhHHHH
Q 018110 163 EGTECSVCLSEFQE-----------DETLRLLPKCNHAFHISCIDTW 198 (360)
Q Consensus 163 ~~~~C~ICl~~~~~-----------~~~~r~lp~C~H~FH~~CI~~W 198 (360)
....|+||.|.|+. .+.|.+. =|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 45789999999974 2233322 4789999998764
No 245
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=21.91 E-value=1.7e+02 Score=23.43 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 018110 82 ASALATTIVAVLCYVVFVKFYLRR 105 (360)
Q Consensus 82 i~iL~~v~llll~~~llv~~~~rR 105 (360)
+...+++|++++++++++++..+.
T Consensus 16 ~~GM~~VF~fL~lLi~~~~l~~~~ 39 (85)
T PRK03814 16 LTGMGVVFIFLTLLVYLVQLMSKL 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555554433
No 246
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=21.74 E-value=67 Score=26.39 Aligned_cols=6 Identities=17% Similarity=-0.047 Sum_probs=2.2
Q ss_pred HHHHHH
Q 018110 98 FVKFYL 103 (360)
Q Consensus 98 lv~~~~ 103 (360)
++.+|+
T Consensus 60 Lv~CC~ 65 (98)
T PF07204_consen 60 LVCCCR 65 (98)
T ss_pred HHHHhh
Confidence 333333
No 247
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.65 E-value=30 Score=24.85 Aligned_cols=11 Identities=45% Similarity=1.219 Sum_probs=5.9
Q ss_pred CCCcccCCccc
Q 018110 204 NCPLCRSPIVK 214 (360)
Q Consensus 204 tCP~CR~~l~~ 214 (360)
.||+|.+++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999998864
No 248
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=21.59 E-value=28 Score=27.02 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=20.8
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
..|+.|..+++... +|.++..|-.. +.....||-|..++..
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHHH
Confidence 46999998865433 44444555332 3456679999988865
No 249
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=21.45 E-value=1.8e+02 Score=23.01 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 018110 89 IVAVLCYVVFVK 100 (360)
Q Consensus 89 ~llll~~~llv~ 100 (360)
|+++++++++++
T Consensus 19 F~fL~lLi~~i~ 30 (82)
T TIGR01195 19 FLFLSLLIYAVR 30 (82)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 250
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=21.42 E-value=1.9e+02 Score=20.17 Aligned_cols=9 Identities=33% Similarity=1.257 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 018110 96 VVFVKFYLR 104 (360)
Q Consensus 96 ~llv~~~~r 104 (360)
.++.+++.+
T Consensus 27 ~~~~~~F~~ 35 (42)
T PF11346_consen 27 VFFIRYFIR 35 (42)
T ss_pred HHHHHHHHH
Confidence 344444443
No 251
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=21.25 E-value=1e+02 Score=32.21 Aligned_cols=7 Identities=14% Similarity=0.055 Sum_probs=5.3
Q ss_pred cCCcccc
Q 018110 45 SCPSYCH 51 (360)
Q Consensus 45 ~cp~~~~ 51 (360)
+-||.||
T Consensus 491 qLPy~~~ 497 (606)
T KOG4550|consen 491 QLPYNVL 497 (606)
T ss_pred ccchhee
Confidence 5588887
No 252
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=21.23 E-value=1.6e+02 Score=23.69 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=4.2
Q ss_pred hhHHHHHHHHH
Q 018110 76 KFLIITASALA 86 (360)
Q Consensus 76 ~ilIiii~iL~ 86 (360)
.|++++.+++.
T Consensus 35 dFvLVic~~lV 45 (84)
T PF06143_consen 35 DFVLVICCFLV 45 (84)
T ss_pred HHHHHHHHHHH
Confidence 33443333333
No 253
>PF10943 DUF2632: Protein of unknown function (DUF2632); InterPro: IPR024251 This is a family of potential membrane proteins that may be components of the viral envelope.
Probab=21.18 E-value=1.4e+02 Score=26.66 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=5.4
Q ss_pred HHHHHHHHHhcc
Q 018110 95 YVVFVKFYLRRR 106 (360)
Q Consensus 95 ~~llv~~~~rRr 106 (360)
++-+++.+.|..
T Consensus 116 finfvklfyrtg 127 (233)
T PF10943_consen 116 FINFVKLFYRTG 127 (233)
T ss_pred HHHHHHHHhhcC
Confidence 344455554433
No 254
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=20.87 E-value=39 Score=32.99 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=4.1
Q ss_pred cCCcccccc
Q 018110 45 SCPSYCHNF 53 (360)
Q Consensus 45 ~cp~~~~~~ 53 (360)
.-|+-|+..
T Consensus 173 ~~~nvC~~~ 181 (278)
T PF06697_consen 173 TSPNVCSTS 181 (278)
T ss_pred CCCceeeee
Confidence 344555433
No 255
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.87 E-value=1.3e+02 Score=32.08 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 018110 78 LIITASALATTI 89 (360)
Q Consensus 78 lIiii~iL~~v~ 89 (360)
+.+++++++++.
T Consensus 400 l~~~~~~~~~~~ 411 (542)
T PHA03283 400 LAFLLAIICTCA 411 (542)
T ss_pred chhHHHHHHHHH
Confidence 333333333333
No 256
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.55 E-value=1.3e+02 Score=24.99 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=18.9
Q ss_pred CCCCChhhHHHHHhc---------CCCCCcccC
Q 018110 187 NHAFHISCIDTWLRS---------HTNCPLCRS 210 (360)
Q Consensus 187 ~H~FH~~CI~~Wl~~---------~~tCP~CR~ 210 (360)
.=.|+..||..++.. +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 678999999988742 234999987
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.02 E-value=65 Score=35.68 Aligned_cols=45 Identities=36% Similarity=0.716 Sum_probs=29.4
Q ss_pred CcccccCCcccc---------CcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 165 TECSVCLSEFQE---------DETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 165 ~~C~ICl~~~~~---------~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
..|+-|...|-. ....-+.|.|.|.-|.+=|. ....||+|...+.
T Consensus 1132 ~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1132 LQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSMES 1185 (1189)
T ss_pred CCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChhh
Confidence 456666665532 12345677899999876443 3678999987654
Done!