Query 018110
Match_columns 360
No_of_seqs 455 out of 1935
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2.4E-16 8.3E-21 125.8 6.6 77 137-214 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3.4E-16 1.2E-20 120.1 2.9 67 147-214 6-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.1E-14 3.9E-19 104.6 4.2 51 163-213 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 2.3E-14 7.9E-19 109.2 5.1 54 162-216 13-66 (74)
5 2ect_A Ring finger protein 126 99.5 6.6E-14 2.3E-18 107.7 5.9 54 162-216 13-66 (78)
6 2kiz_A E3 ubiquitin-protein li 99.4 6.5E-14 2.2E-18 105.3 4.9 52 162-214 12-63 (69)
7 2ecl_A Ring-box protein 2; RNF 99.4 6.4E-14 2.2E-18 109.5 3.1 52 163-214 14-76 (81)
8 1v87_A Deltex protein 2; ring- 99.4 6.4E-13 2.2E-17 109.4 6.2 51 163-214 24-94 (114)
9 2ecm_A Ring finger and CHY zin 99.3 5.8E-13 2E-17 95.4 4.0 50 163-213 4-54 (55)
10 2ea6_A Ring finger protein 4; 99.3 1.3E-12 4.5E-17 97.4 3.9 52 162-214 13-68 (69)
11 3dpl_R Ring-box protein 1; ubi 99.3 1.1E-12 3.8E-17 108.0 3.7 50 163-213 36-100 (106)
12 3ng2_A RNF4, snurf, ring finge 99.3 1.1E-12 3.7E-17 98.7 2.9 51 163-214 9-63 (71)
13 2ecn_A Ring finger protein 141 99.2 1.7E-12 5.7E-17 97.8 2.5 50 162-216 13-62 (70)
14 2xeu_A Ring finger protein 4; 99.2 1.7E-12 6E-17 95.4 2.5 51 163-214 2-56 (64)
15 2d8s_A Cellular modulator of i 99.2 4.9E-12 1.7E-16 99.0 5.1 51 163-215 14-71 (80)
16 1chc_A Equine herpes virus-1 r 99.2 7.3E-12 2.5E-16 93.6 5.1 49 163-214 4-52 (68)
17 2djb_A Polycomb group ring fin 99.2 1E-11 3.5E-16 94.3 5.5 52 161-215 12-63 (72)
18 4a0k_B E3 ubiquitin-protein li 99.2 2.9E-12 1E-16 107.3 0.3 51 163-214 47-112 (117)
19 2ct2_A Tripartite motif protei 99.2 2.2E-11 7.6E-16 95.1 4.9 53 161-214 12-68 (88)
20 2d8t_A Dactylidin, ring finger 99.1 1.2E-11 4.1E-16 93.6 2.6 49 162-214 13-61 (71)
21 2ct0_A Non-SMC element 1 homol 99.1 6.4E-11 2.2E-15 91.4 5.5 49 163-214 14-64 (74)
22 2yur_A Retinoblastoma-binding 99.1 9.1E-11 3.1E-15 89.6 5.4 50 162-214 13-64 (74)
23 2ecy_A TNF receptor-associated 99.1 9.6E-11 3.3E-15 87.2 5.0 49 162-214 13-62 (66)
24 2csy_A Zinc finger protein 183 99.1 6.7E-11 2.3E-15 91.6 4.1 47 163-213 14-60 (81)
25 2ysl_A Tripartite motif-contai 99.1 1E-10 3.5E-15 88.4 4.6 49 162-214 18-69 (73)
26 4ayc_A E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 100.5 2.8 47 164-214 53-99 (138)
27 4ap4_A E3 ubiquitin ligase RNF 99.0 9.7E-11 3.3E-15 97.7 2.8 51 163-214 6-60 (133)
28 2ecw_A Tripartite motif-contai 99.0 3.1E-10 1.1E-14 87.6 5.1 49 162-214 17-71 (85)
29 2ecv_A Tripartite motif-contai 99.0 3.7E-10 1.3E-14 87.1 5.1 49 162-214 17-71 (85)
30 1g25_A CDK-activating kinase a 99.0 2.5E-10 8.5E-15 84.7 3.8 51 163-214 2-55 (65)
31 3lrq_A E3 ubiquitin-protein li 99.0 1.8E-10 6.3E-15 93.0 3.0 49 163-214 21-70 (100)
32 2egp_A Tripartite motif-contai 99.0 1.4E-10 4.8E-15 88.8 1.9 50 161-214 9-65 (79)
33 1t1h_A Gspef-atpub14, armadill 99.0 3.8E-10 1.3E-14 86.5 4.0 49 162-214 6-55 (78)
34 2ysj_A Tripartite motif-contai 98.9 5.2E-10 1.8E-14 82.4 4.5 44 161-208 17-63 (63)
35 2ecj_A Tripartite motif-contai 98.9 5.5E-10 1.9E-14 80.4 4.4 43 162-208 13-58 (58)
36 2y43_A E3 ubiquitin-protein li 98.9 3.1E-10 1E-14 91.1 3.3 49 163-214 21-69 (99)
37 2ckl_A Polycomb group ring fin 98.9 3.6E-10 1.2E-14 92.2 3.2 49 163-214 14-62 (108)
38 4ap4_A E3 ubiquitin ligase RNF 98.9 3.1E-10 1.1E-14 94.5 2.6 51 163-214 71-125 (133)
39 3ztg_A E3 ubiquitin-protein li 98.9 1.1E-09 3.9E-14 86.4 4.7 51 160-213 9-61 (92)
40 1e4u_A Transcriptional repress 98.9 3.3E-09 1.1E-13 82.4 6.2 54 161-215 8-63 (78)
41 2ckl_B Ubiquitin ligase protei 98.9 9.2E-10 3.1E-14 96.4 3.4 49 163-214 53-102 (165)
42 3fl2_A E3 ubiquitin-protein li 98.8 1.2E-09 4E-14 91.3 3.4 48 163-214 51-99 (124)
43 1jm7_A BRCA1, breast cancer ty 98.8 2E-09 6.7E-14 87.7 4.3 47 164-214 21-70 (112)
44 3hct_A TNF receptor-associated 98.8 1.5E-09 5.2E-14 90.0 2.4 50 161-214 15-65 (118)
45 1z6u_A NP95-like ring finger p 98.7 4.3E-09 1.5E-13 91.4 3.4 48 163-214 77-125 (150)
46 1rmd_A RAG1; V(D)J recombinati 98.7 5E-09 1.7E-13 86.4 3.1 47 164-214 23-70 (116)
47 2vje_A E3 ubiquitin-protein li 98.7 5.5E-09 1.9E-13 77.8 2.7 49 163-214 7-57 (64)
48 3l11_A E3 ubiquitin-protein li 98.7 2.3E-09 8E-14 88.2 0.6 48 163-214 14-62 (115)
49 1bor_A Transcription factor PM 98.6 1.3E-08 4.3E-13 73.7 2.9 45 163-214 5-49 (56)
50 2y1n_A E3 ubiquitin-protein li 98.6 1.5E-08 5.3E-13 100.4 4.6 48 164-215 332-380 (389)
51 3k1l_B Fancl; UBC, ring, RWD, 98.6 8.6E-09 2.9E-13 100.3 2.5 52 163-214 307-373 (381)
52 2kr4_A Ubiquitin conjugation f 98.6 1.9E-08 6.4E-13 79.1 3.8 48 163-214 13-60 (85)
53 2vje_B MDM4 protein; proto-onc 98.6 1.4E-08 4.7E-13 75.4 2.4 50 163-214 6-56 (63)
54 3knv_A TNF receptor-associated 98.6 8.5E-09 2.9E-13 88.6 0.6 48 163-214 30-78 (141)
55 2kre_A Ubiquitin conjugation f 98.6 3E-08 1E-12 80.4 3.7 49 162-214 27-75 (100)
56 1jm7_B BARD1, BRCA1-associated 98.6 1.2E-08 4.2E-13 84.4 1.2 45 163-213 21-66 (117)
57 1wgm_A Ubiquitin conjugation f 98.5 4.2E-08 1.4E-12 79.3 4.1 48 163-214 21-69 (98)
58 4ic3_A E3 ubiquitin-protein li 98.5 1.8E-08 6.1E-13 77.0 1.3 44 163-214 23-67 (74)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.5 7.2E-08 2.4E-12 71.2 3.9 47 163-213 5-58 (60)
60 3hcs_A TNF receptor-associated 98.4 6.8E-08 2.3E-12 84.7 2.3 50 161-214 15-65 (170)
61 2yu4_A E3 SUMO-protein ligase 98.4 1.4E-07 4.7E-12 75.4 3.2 47 162-211 5-59 (94)
62 1wim_A KIAA0161 protein; ring 98.4 1.2E-07 4E-12 75.4 2.3 48 163-211 4-61 (94)
63 2ea5_A Cell growth regulator w 98.3 5.4E-07 1.8E-11 67.9 5.2 45 163-215 14-59 (68)
64 2c2l_A CHIP, carboxy terminus 98.3 2.7E-07 9.1E-12 85.9 4.2 49 162-214 206-255 (281)
65 2ecg_A Baculoviral IAP repeat- 98.3 2.5E-07 8.5E-12 70.6 2.7 43 164-214 25-68 (75)
66 2yho_A E3 ubiquitin-protein li 98.1 4.9E-07 1.7E-11 70.1 1.5 44 164-215 18-62 (79)
67 2f42_A STIP1 homology and U-bo 98.1 1.3E-06 4.3E-11 78.1 3.5 51 160-214 102-153 (179)
68 3htk_C E3 SUMO-protein ligase 98.0 2.6E-06 8.9E-11 80.2 2.9 49 163-214 180-232 (267)
69 3t6p_A Baculoviral IAP repeat- 98.0 1.7E-06 5.7E-11 84.8 1.5 44 163-214 294-338 (345)
70 2bay_A PRE-mRNA splicing facto 97.9 3.9E-06 1.3E-10 61.9 1.8 47 165-214 4-50 (61)
71 3vk6_A E3 ubiquitin-protein li 97.8 6.2E-06 2.1E-10 66.6 2.7 49 166-217 3-52 (101)
72 3nw0_A Non-structural maintena 97.8 1.6E-05 5.4E-10 74.0 5.0 48 164-214 180-229 (238)
73 2ko5_A Ring finger protein Z; 94.8 0.031 1E-06 44.5 4.5 57 160-221 24-80 (99)
74 2lri_C Autoimmune regulator; Z 93.2 0.062 2.1E-06 39.9 3.2 46 163-212 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 91.2 0.088 3E-06 41.4 2.1 35 163-198 2-36 (101)
76 1we9_A PHD finger family prote 85.1 0.19 6.6E-06 36.5 0.3 49 163-211 5-58 (64)
77 2klu_A T-cell surface glycopro 83.4 1.1 3.8E-05 33.2 3.7 8 186-193 59-66 (70)
78 2l2t_A Receptor tyrosine-prote 83.0 2.6 8.8E-05 28.8 5.2 8 100-107 31-38 (44)
79 2l5u_A Chromodomain-helicase-D 82.4 0.57 1.9E-05 33.9 1.9 44 163-210 10-57 (61)
80 1mm2_A MI2-beta; PHD, zinc fin 82.4 0.44 1.5E-05 34.5 1.3 46 163-212 8-57 (61)
81 3lqh_A Histone-lysine N-methyl 82.2 0.49 1.7E-05 42.0 1.7 49 164-212 2-64 (183)
82 2knc_A Integrin alpha-IIB; tra 81.7 3.6 0.00012 29.3 5.8 26 76-101 11-36 (54)
83 3u5n_A E3 ubiquitin-protein li 80.8 0.42 1.4E-05 42.8 0.8 46 163-212 6-55 (207)
84 2ks1_B Epidermal growth factor 80.1 1.7 5.9E-05 29.6 3.5 7 101-107 33-39 (44)
85 2l8s_A Integrin alpha-1; trans 78.8 3.5 0.00012 29.3 4.9 26 76-101 8-33 (54)
86 3o36_A Transcription intermedi 78.5 0.49 1.7E-05 41.4 0.5 46 163-212 3-52 (184)
87 1f62_A Transcription factor WS 78.2 0.87 3E-05 31.4 1.6 44 166-210 2-49 (51)
88 2yql_A PHD finger protein 21A; 76.5 0.42 1.4E-05 33.9 -0.5 45 162-210 7-55 (56)
89 1wil_A KIAA1045 protein; ring 74.7 6.9 0.00024 30.4 5.9 35 162-198 13-47 (89)
90 2jwa_A Receptor tyrosine-prote 74.0 5.3 0.00018 27.2 4.5 28 76-104 13-40 (44)
91 1weo_A Cellulose synthase, cat 73.5 16 0.00055 28.6 7.8 53 163-215 15-71 (93)
92 2k16_A Transcription initiatio 73.1 0.47 1.6E-05 35.5 -1.0 50 163-213 17-70 (75)
93 3v43_A Histone acetyltransfera 72.3 1 3.6E-05 36.3 0.8 45 166-210 63-111 (112)
94 2vpb_A Hpygo1, pygopus homolog 71.3 2.1 7.1E-05 31.4 2.2 34 163-196 7-41 (65)
95 2puy_A PHD finger protein 21A; 70.5 0.45 1.5E-05 34.2 -1.6 47 163-213 4-54 (60)
96 1xwh_A Autoimmune regulator; P 69.6 0.8 2.7E-05 33.6 -0.4 45 163-211 7-55 (66)
97 2k21_A Potassium voltage-gated 68.8 3.2 0.00011 34.6 3.0 30 75-104 51-80 (138)
98 2ysm_A Myeloid/lymphoid or mix 68.0 1.6 5.4E-05 35.0 1.0 46 163-209 6-55 (111)
99 1fp0_A KAP-1 corepressor; PHD 67.9 3.1 0.00011 32.5 2.7 45 163-211 24-72 (88)
100 1wep_A PHF8; structural genomi 66.7 3 0.0001 31.5 2.3 49 163-212 11-64 (79)
101 2kgg_A Histone demethylase jar 66.5 1.7 5.7E-05 30.3 0.8 45 165-209 3-52 (52)
102 2k1a_A Integrin alpha-IIB; sin 65.8 6.9 0.00023 26.4 3.7 26 76-101 9-34 (42)
103 2ro1_A Transcription intermedi 64.5 2.1 7E-05 37.8 1.1 44 164-211 2-49 (189)
104 2l43_A N-teminal domain from h 63.9 2.3 7.9E-05 33.0 1.2 50 163-212 24-76 (88)
105 2l2t_A Receptor tyrosine-prote 63.5 9.7 0.00033 25.9 4.1 31 76-106 11-41 (44)
106 1wev_A Riken cDNA 1110020M19; 62.3 1.3 4.4E-05 34.4 -0.6 51 164-214 16-75 (88)
107 2e6r_A Jumonji/ARID domain-con 62.1 1.2 4E-05 35.0 -0.8 48 163-211 15-66 (92)
108 2xb1_A Pygopus homolog 2, B-ce 62.1 2.9 0.0001 33.5 1.5 47 165-211 4-61 (105)
109 1iij_A ERBB-2 receptor protein 61.8 4.7 0.00016 26.2 2.1 8 79-86 9-16 (35)
110 2e6s_A E3 ubiquitin-protein li 60.2 1.6 5.4E-05 33.2 -0.4 45 165-210 27-76 (77)
111 3asl_A E3 ubiquitin-protein li 60.0 1.7 5.9E-05 32.2 -0.2 44 166-210 20-68 (70)
112 2k9j_B Integrin beta-3; transm 58.9 22 0.00074 23.9 5.2 27 77-103 9-35 (43)
113 2ks1_B Epidermal growth factor 58.0 10 0.00035 25.7 3.5 31 76-106 12-42 (44)
114 1afo_A Glycophorin A; integral 58.0 19 0.00064 23.8 4.5 18 76-93 11-28 (40)
115 2lv9_A Histone-lysine N-methyl 57.7 2.9 9.9E-05 33.0 0.8 44 165-210 29-75 (98)
116 2yt5_A Metal-response element- 57.6 5 0.00017 28.9 2.0 49 163-211 5-61 (66)
117 2ri7_A Nucleosome-remodeling f 57.3 1.7 5.9E-05 37.4 -0.7 48 163-211 7-59 (174)
118 1weu_A Inhibitor of growth fam 56.8 7.7 0.00026 30.4 3.1 45 163-212 35-86 (91)
119 3shb_A E3 ubiquitin-protein li 56.7 1.7 5.8E-05 33.0 -0.7 44 166-210 28-76 (77)
120 3ql9_A Transcriptional regulat 56.4 6.5 0.00022 32.8 2.7 45 163-211 56-111 (129)
121 3v43_A Histone acetyltransfera 55.6 15 0.0005 29.4 4.7 47 163-209 4-62 (112)
122 2knc_B Integrin beta-3; transm 55.1 14 0.00049 28.0 4.3 19 82-100 15-33 (79)
123 4gne_A Histone-lysine N-methyl 53.7 7.9 0.00027 31.2 2.8 46 162-213 13-64 (107)
124 1wen_A Inhibitor of growth fam 53.2 8 0.00027 28.7 2.5 45 163-212 15-66 (71)
125 2klu_A T-cell surface glycopro 52.9 24 0.00082 26.1 4.9 7 80-86 12-18 (70)
126 3o70_A PHD finger protein 13; 52.9 2.9 0.0001 30.8 0.0 46 163-210 18-66 (68)
127 2l6w_A Beta-type platelet-deri 57.1 3.1 0.00011 27.6 0.0 22 78-99 8-29 (39)
128 2lbm_A Transcriptional regulat 51.0 12 0.00042 31.6 3.7 44 163-210 62-116 (142)
129 3ask_A E3 ubiquitin-protein li 50.9 4.3 0.00015 37.1 0.8 45 165-210 175-224 (226)
130 2hm3_A Nematocyst outer WALL a 48.8 3.9 0.00013 24.9 0.1 18 23-45 6-23 (31)
131 1vfy_A Phosphatidylinositol-3- 48.2 12 0.00041 27.6 2.8 33 164-196 11-43 (73)
132 2cs3_A Protein C14ORF4, MY039 46.6 19 0.00065 27.7 3.7 38 164-201 15-52 (93)
133 3t7l_A Zinc finger FYVE domain 45.6 12 0.00041 28.8 2.6 52 163-214 19-76 (90)
134 1joc_A EEA1, early endosomal a 45.2 12 0.0004 30.8 2.5 35 163-197 68-102 (125)
135 2kwj_A Zinc finger protein DPF 45.0 13 0.00046 29.8 2.9 34 165-198 2-41 (114)
136 1wfk_A Zinc finger, FYVE domai 45.0 13 0.00044 28.7 2.6 52 163-214 8-66 (88)
137 1wem_A Death associated transc 44.6 6.3 0.00022 29.3 0.8 46 164-211 16-70 (76)
138 1z2q_A LM5-1; membrane protein 44.1 14 0.00048 28.0 2.7 36 163-198 20-55 (84)
139 2yw8_A RUN and FYVE domain-con 44.0 14 0.00047 27.9 2.6 35 163-197 18-52 (82)
140 2ku3_A Bromodomain-containing 43.0 16 0.00053 27.1 2.7 48 163-210 15-65 (71)
141 1y02_A CARP2, FYVE-ring finger 43.0 3.4 0.00012 34.0 -1.0 48 164-211 19-66 (120)
142 1dvp_A HRS, hepatocyte growth 42.6 12 0.0004 33.5 2.3 35 163-197 160-194 (220)
143 3zyq_A Hepatocyte growth facto 40.8 14 0.00046 33.4 2.5 36 163-198 163-198 (226)
144 3m62_A Ubiquitin conjugation f 40.7 18 0.0006 39.7 3.7 49 162-214 889-938 (968)
145 1sop_A Mini-collagen; collagen 40.6 16 0.00054 21.8 1.9 11 40-50 9-19 (26)
146 2knc_B Integrin beta-3; transm 40.2 46 0.0016 25.1 5.0 31 76-106 13-43 (79)
147 3j1r_A Archaeal adhesion filam 38.9 51 0.0018 19.7 3.9 20 76-95 3-22 (26)
148 1x4u_A Zinc finger, FYVE domai 38.9 17 0.00059 27.5 2.5 33 163-195 13-45 (84)
149 2gsm_B Cytochrome C oxidase su 38.8 26 0.00088 32.4 4.1 13 45-61 9-21 (262)
150 2ysm_A Myeloid/lymphoid or mix 37.6 4.1 0.00014 32.5 -1.4 45 166-211 56-104 (111)
151 3i2d_A E3 SUMO-protein ligase 36.9 24 0.00081 34.5 3.6 46 165-214 250-300 (371)
152 3c6w_A P28ING5, inhibitor of g 36.5 6.9 0.00024 27.9 -0.2 43 163-210 8-57 (59)
153 4fo9_A E3 SUMO-protein ligase 36.4 25 0.00084 34.2 3.7 46 165-214 216-266 (360)
154 1zbd_B Rabphilin-3A; G protein 36.3 15 0.00051 30.7 1.9 33 163-195 54-87 (134)
155 2rsd_A E3 SUMO-protein ligase 35.8 3.1 0.00011 30.5 -2.2 45 165-210 11-64 (68)
156 2vnf_A ING 4, P29ING4, inhibit 34.2 7.3 0.00025 27.8 -0.3 42 164-210 10-58 (60)
157 1zfo_A LAsp-1; LIM domain, zin 33.7 19 0.00064 22.1 1.6 28 165-195 4-31 (31)
158 2jp3_A FXYD domain-containing 33.3 45 0.0015 24.6 3.8 19 85-103 24-42 (67)
159 3mpx_A FYVE, rhogef and PH dom 31.9 9.7 0.00033 37.0 0.0 50 163-212 374-430 (434)
160 2jo1_A Phospholemman; FXYD1, N 30.8 92 0.0031 23.2 5.1 20 84-103 22-41 (72)
161 1wee_A PHD finger family prote 30.6 15 0.00052 26.9 0.9 47 164-211 16-66 (72)
162 1z60_A TFIIH basal transcripti 28.5 26 0.0009 25.1 1.8 42 165-208 16-58 (59)
163 2hlg_A Fruit-specific protein; 28.0 22 0.00076 23.1 1.2 19 25-51 2-22 (39)
164 2kwj_A Zinc finger protein DPF 27.3 6.4 0.00022 31.7 -1.9 46 166-212 60-109 (114)
165 1rpq_W Peptide E131; receptor- 26.8 17 0.00058 21.3 0.4 7 45-51 14-20 (26)
166 3mjh_B Early endosome antigen 26.0 8.1 0.00028 24.8 -1.2 16 163-178 4-19 (34)
167 2o35_A Hypothetical protein DU 25.6 26 0.00088 28.0 1.4 12 189-200 42-53 (105)
168 3f6q_B LIM and senescent cell 25.5 27 0.00093 24.4 1.5 42 163-214 10-51 (72)
169 3fyb_A Protein of unknown func 25.3 26 0.00089 27.9 1.4 12 189-200 41-52 (104)
170 1x4k_A Skeletal muscle LIM-pro 25.2 37 0.0013 23.9 2.2 41 164-214 5-45 (72)
171 2jmi_A Protein YNG1, ING1 homo 24.8 17 0.00059 28.2 0.3 43 163-210 25-75 (90)
172 1x61_A Thyroid receptor intera 24.6 58 0.002 22.9 3.2 40 164-213 5-44 (72)
173 2g6q_A Inhibitor of growth pro 24.6 14 0.00049 26.5 -0.2 43 163-210 10-59 (62)
174 1wyh_A SLIM 2, skeletal muscle 23.6 57 0.002 22.9 3.0 41 164-214 5-45 (72)
175 2zet_C Melanophilin; complex, 23.5 37 0.0013 28.9 2.1 47 163-210 67-116 (153)
176 3hb3_B Cytochrome C oxidase su 22.5 69 0.0024 30.2 4.0 11 47-61 42-52 (298)
177 1wew_A DNA-binding family prot 22.2 41 0.0014 24.9 2.0 47 163-211 15-72 (78)
178 2co8_A NEDD9 interacting prote 22.2 83 0.0028 23.0 3.7 41 163-214 14-54 (82)
179 3o7a_A PHD finger protein 13 v 21.9 13 0.00043 25.6 -1.0 41 169-210 8-51 (52)
180 1x4l_A Skeletal muscle LIM-pro 21.5 72 0.0025 22.4 3.2 40 164-213 5-46 (72)
181 2gmg_A Hypothetical protein PF 21.4 20 0.00069 28.8 0.0 25 185-214 72-96 (105)
182 1g47_A Pinch protein; LIM doma 21.2 77 0.0026 22.5 3.3 42 163-214 10-51 (77)
183 1iml_A CRIP, cysteine rich int 20.6 34 0.0012 24.6 1.2 37 166-213 2-38 (76)
184 2dj7_A Actin-binding LIM prote 20.5 78 0.0027 23.1 3.2 40 163-213 14-53 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=125.79 Aligned_cols=77 Identities=25% Similarity=0.640 Sum_probs=67.7
Q ss_pred cccCCCCHHHHHhhcceEeecCCC-CcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 137 INTVGLQSSVIREIAVLKYKKSDG-LVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 137 ~~~~gl~~~~i~~lp~~~~~~~~~-~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
....+++++.|+.||.+.+..... ..++..|+||++.|..++.++.+| |+|.||..||..|++.+.+||+||+.+.+
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 356799999999999999876543 345678999999999988899999 99999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-16 Score=120.07 Aligned_cols=67 Identities=34% Similarity=0.904 Sum_probs=59.6
Q ss_pred HHhhcceEeecCCCCcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 147 IREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 147 i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
++.+|.++++......++.+|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||+++.+
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45678888877666667889999999999988899998 99999999999999999999999999865
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.50 E-value=1.1e-14 Score=104.57 Aligned_cols=51 Identities=53% Similarity=1.303 Sum_probs=46.7
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
++.+|+||++.|..++.++.++.|+|.||..||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 567899999999998888888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=109.24 Aligned_cols=54 Identities=37% Similarity=0.958 Sum_probs=48.9
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccccC
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 216 (360)
..+..|+||++.|.....++.++ |+|.||..||.+|++.+.+||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 35678999999999988888898 9999999999999999999999999997644
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=6.6e-14 Score=107.74 Aligned_cols=54 Identities=46% Similarity=1.038 Sum_probs=48.7
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccccC
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 216 (360)
....+|+||++.|...+.++.++ |+|.||..||..|++.+.+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 35678999999999888888898 9999999999999999999999999987643
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=6.5e-14 Score=105.29 Aligned_cols=52 Identities=42% Similarity=1.001 Sum_probs=47.4
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.....|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||+.+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 35678999999998888888998 99999999999999999999999999875
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=6.4e-14 Score=109.47 Aligned_cols=52 Identities=29% Similarity=0.876 Sum_probs=43.5
Q ss_pred CCCcccccCCcccc-----------CcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQE-----------DETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~-----------~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
++..|+||++.|.. ++.++.++.|+|.||..||++||+.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45779999888854 34466666699999999999999999999999999865
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.36 E-value=6.4e-13 Score=109.40 Aligned_cols=51 Identities=25% Similarity=0.673 Sum_probs=41.9
Q ss_pred CCCcccccCCccccCc---------------ceeecCCCCCCCChhhHHHHH-----hcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDE---------------TLRLLPKCNHAFHISCIDTWL-----RSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~---------------~~r~lp~C~H~FH~~CI~~Wl-----~~~~tCP~CR~~l~~ 214 (360)
.+.+|+||++.|.... .+++++ |+|.||..||..|| ..+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997643 334676 99999999999999 456789999998865
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.34 E-value=5.8e-13 Score=95.42 Aligned_cols=50 Identities=30% Similarity=0.846 Sum_probs=43.3
Q ss_pred CCCcccccCCccccC-cceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 163 EGTECSVCLSEFQED-ETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~-~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
.+.+|+||++.|..+ +.++.++ |+|.||..||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999999654 3567777 9999999999999999999999999874
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=97.45 Aligned_cols=52 Identities=25% Similarity=0.666 Sum_probs=44.1
Q ss_pred cCCCcccccCCccccC----cceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQED----ETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.+...|+||++.|... ..+..++ |+|.||..||..|++.+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999999763 3346677 99999999999999999999999998753
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.29 E-value=1.1e-12 Score=108.01 Aligned_cols=50 Identities=32% Similarity=0.696 Sum_probs=42.9
Q ss_pred CCCcccccCCccccCc---------------ceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 163 EGTECSVCLSEFQEDE---------------TLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~---------------~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
+++.|+||++.|.... .++.++ |+|.||..||.+||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5678999999998541 356676 9999999999999999999999999864
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28 E-value=1.1e-12 Score=98.75 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=44.2
Q ss_pred CCCcccccCCccccC----cceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQED----ETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
++.+|+||++.|... +.+..++ |||.||..||.+|++.+.+||+||.++..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 567899999998763 4456777 99999999999999999999999999875
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=97.78 Aligned_cols=50 Identities=38% Similarity=0.996 Sum_probs=43.7
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccccC
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKIN 216 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 216 (360)
.+...|+||++.+.. ..++ |+|.||..||..|+..+.+||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456789999999876 5677 9999999999999999999999999987643
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=95.38 Aligned_cols=51 Identities=25% Similarity=0.675 Sum_probs=43.7
Q ss_pred CCCcccccCCccccC----cceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQED----ETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
++.+|+||++.|... +.+..++ |||.||..||.+|++.+.+||+||+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 457899999999753 3446677 99999999999999999999999999865
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.9e-12 Score=99.03 Aligned_cols=51 Identities=27% Similarity=0.798 Sum_probs=43.5
Q ss_pred CCCcccccCCccccCcceeecCCCC-----CCCChhhHHHHHhcC--CCCCcccCCcccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCN-----HAFHISCIDTWLRSH--TNCPLCRSPIVKI 215 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~-----H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~ 215 (360)
++..|.||+++|..++.+ ++| |+ |.||..||++||..+ .+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 567899999999877766 588 96 999999999999865 5899999998753
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.23 E-value=7.3e-12 Score=93.59 Aligned_cols=49 Identities=37% Similarity=0.948 Sum_probs=42.8
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.+..|+||++.+.. .++.++ |||.||..||..|++.+.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45789999999864 356787 99999999999999999999999999864
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=94.26 Aligned_cols=52 Identities=25% Similarity=0.523 Sum_probs=43.5
Q ss_pred CcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcccc
Q 018110 161 LVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 161 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
..+...|+||++.|.+ .+.+++ |+|.||..||..|++.+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3456789999999875 344446 999999999999999999999999998763
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.17 E-value=2.9e-12 Score=107.30 Aligned_cols=51 Identities=33% Similarity=0.704 Sum_probs=1.1
Q ss_pred CCCcccccCCccccC-------------c--ceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQED-------------E--TLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~-------------~--~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.++.|+||+++|... + .+..++ |+|.||..||.+||+.+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 457899999999752 1 223345 99999999999999999999999998653
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=95.10 Aligned_cols=53 Identities=32% Similarity=0.746 Sum_probs=44.9
Q ss_pred CcCCCcccccCCccccCcc-eeecCCCCCCCChhhHHHHHhcC---CCCCcccCCccc
Q 018110 161 LVEGTECSVCLSEFQEDET-LRLLPKCNHAFHISCIDTWLRSH---TNCPLCRSPIVK 214 (360)
Q Consensus 161 ~~~~~~C~ICl~~~~~~~~-~r~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~ 214 (360)
..+..+|+||++.|...+. .+.++ |||.||..||..|++.+ .+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3456789999999987664 66777 99999999999999875 789999998764
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-11 Score=93.57 Aligned_cols=49 Identities=31% Similarity=0.658 Sum_probs=42.5
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.+...|+||++.+.. ...++ |+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 356789999999855 35567 99999999999999999999999999875
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=6.4e-11 Score=91.40 Aligned_cols=49 Identities=20% Similarity=0.625 Sum_probs=41.4
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC--CCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH--TNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~ 214 (360)
...+|+||++.|..++... .|+|.||..||.+||+.+ .+||+||+++..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3478999999998654332 599999999999999877 889999999875
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.09 E-value=9.1e-11 Score=89.58 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=40.9
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC--CCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH--TNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~ 214 (360)
.+...|+||++.|... ..++.|||.||..||..|++.+ .+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3567899999998753 3355599999999999999865 689999997654
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.6e-11 Score=87.22 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=40.6
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~ 214 (360)
.+...|+||++.+.... .++ |||.||..||..|+. ...+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35678999999987542 356 999999999999994 56789999999865
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=6.7e-11 Score=91.60 Aligned_cols=47 Identities=28% Similarity=0.583 Sum_probs=41.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
....|+||++.|.. ..+++ |+|.||..||..|+....+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45789999999865 33577 9999999999999999999999999985
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1e-10 Score=88.36 Aligned_cols=49 Identities=31% Similarity=0.732 Sum_probs=40.9
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh---cCCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR---SHTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~~l~~ 214 (360)
.+...|+||++.|.. ...++ |||.||..||..|++ ....||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 456789999999874 34566 999999999999997 45689999999865
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.02 E-value=7.9e-11 Score=100.54 Aligned_cols=47 Identities=34% Similarity=0.885 Sum_probs=41.0
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
+..|+||++.|.. ...+| |||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999999865 45677 99999999999999999999999998853
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=9.7e-11 Score=97.65 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=44.1
Q ss_pred CCCcccccCCccccC----cceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQED----ETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
++.+|+||++.|... +.++.++ |||.||..||..|++.+.+||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 457899999999764 4456777 99999999999999999999999998864
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.00 E-value=3.1e-10 Score=87.60 Aligned_cols=49 Identities=37% Similarity=0.752 Sum_probs=41.5
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc------CCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS------HTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~ 214 (360)
.+...|+||++.|... ..++ |+|.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3567899999998653 3577 9999999999999987 6789999999864
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.7e-10 Score=87.12 Aligned_cols=49 Identities=27% Similarity=0.699 Sum_probs=41.5
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc------CCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS------HTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~ 214 (360)
.+...|+||++.|... ..++ |+|.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3567899999998653 3466 9999999999999987 7889999999875
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.5e-10 Score=84.70 Aligned_cols=51 Identities=25% Similarity=0.657 Sum_probs=40.8
Q ss_pred CCCcccccCC-ccccCcce-eecCCCCCCCChhhHHHHHhc-CCCCCcccCCccc
Q 018110 163 EGTECSVCLS-EFQEDETL-RLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~-~~~~~~~~-r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 214 (360)
++..|+||++ .|...... ..++ |||.||..||.+|+.. ...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3568999999 77665443 3466 9999999999999764 4679999999865
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.97 E-value=1.8e-10 Score=93.05 Aligned_cols=49 Identities=29% Similarity=0.771 Sum_probs=41.2
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC-CCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH-TNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~ 214 (360)
+...|+||++.|.. .+..++ |||.||..||..|+... .+||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 45789999999864 343376 99999999999999987 699999999854
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.96 E-value=1.4e-10 Score=88.80 Aligned_cols=50 Identities=26% Similarity=0.622 Sum_probs=41.6
Q ss_pred CcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-------CCCCCcccCCccc
Q 018110 161 LVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-------HTNCPLCRSPIVK 214 (360)
Q Consensus 161 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-------~~tCP~CR~~l~~ 214 (360)
..+...|+||++.|... +.++ |||.||..||..|+.. ...||+||..+..
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34568899999998653 3467 9999999999999986 6689999999864
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.95 E-value=3.8e-10 Score=86.46 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=41.4
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 214 (360)
.+...|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 456789999999865 34467 9999999999999987 7889999998754
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.2e-10 Score=82.35 Aligned_cols=44 Identities=34% Similarity=0.778 Sum_probs=36.4
Q ss_pred CcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh---cCCCCCcc
Q 018110 161 LVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR---SHTNCPLC 208 (360)
Q Consensus 161 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~---~~~tCP~C 208 (360)
..++..|+||++.|.. .+.++ |||.||..||..|++ ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999875 34456 999999999999998 45689998
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=5.5e-10 Score=80.44 Aligned_cols=43 Identities=35% Similarity=0.908 Sum_probs=35.6
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh---cCCCCCcc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR---SHTNCPLC 208 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~---~~~tCP~C 208 (360)
.+...|+||++.|... +.++ |+|.||..||..|+. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3567899999999764 3466 999999999999954 56789998
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.94 E-value=3.1e-10 Score=91.13 Aligned_cols=49 Identities=24% Similarity=0.699 Sum_probs=41.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
+...|+||++.|.. .+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 34689999999875 343346 99999999999999999999999998864
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.93 E-value=3.6e-10 Score=92.22 Aligned_cols=49 Identities=27% Similarity=0.692 Sum_probs=42.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
+...|+||++.|.. .+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 46789999999865 444447 99999999999999999999999998865
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=3.1e-10 Score=94.55 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=43.5
Q ss_pred CCCcccccCCccccC----cceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQED----ETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
+...|+||++.|... .....++ |||.||..||++|++.+.+||+||..+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 457899999998753 3345666 99999999999999999999999999875
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=86.42 Aligned_cols=51 Identities=24% Similarity=0.573 Sum_probs=40.8
Q ss_pred CCcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC--CCCCcccCCcc
Q 018110 160 GLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH--TNCPLCRSPIV 213 (360)
Q Consensus 160 ~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~ 213 (360)
...+...|+||++.|.+. ..++.|||.||..||..|+... ..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 334668999999998753 3455599999999999999743 58999999874
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.85 E-value=3.3e-09 Score=82.36 Aligned_cols=54 Identities=20% Similarity=0.464 Sum_probs=41.7
Q ss_pred CcCCCcccccCCccccCcc-eeecCCCCCCCChhhHHHHHh-cCCCCCcccCCcccc
Q 018110 161 LVEGTECSVCLSEFQEDET-LRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVKI 215 (360)
Q Consensus 161 ~~~~~~C~ICl~~~~~~~~-~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~ 215 (360)
+.++.+|+||++.+...+. +..++ |||.||..||..|+. ....||+||+++...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 3466789999999865432 23344 999999999999985 456799999998763
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=9.2e-10 Score=96.39 Aligned_cols=49 Identities=37% Similarity=0.772 Sum_probs=41.2
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 214 (360)
+...|+||++.|.. .+..++ |||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34589999999875 454456 9999999999999987 7789999999854
No 42
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.84 E-value=1.2e-09 Score=91.32 Aligned_cols=48 Identities=25% Similarity=0.570 Sum_probs=40.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCC-CCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 214 (360)
+...|+||++.|.. ...++ |||.||..||..|+..+. +||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34689999999874 34567 999999999999998544 89999999864
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=2e-09 Score=87.75 Aligned_cols=47 Identities=34% Similarity=0.743 Sum_probs=39.1
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCC---CCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHT---NCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~---tCP~CR~~l~~ 214 (360)
...|+||++.|... ..++ |||.||..||..|+..+. +||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 46799999998653 3466 999999999999998654 89999998764
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.79 E-value=1.5e-09 Score=90.01 Aligned_cols=50 Identities=30% Similarity=0.669 Sum_probs=41.5
Q ss_pred CcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCC-CCCcccCCccc
Q 018110 161 LVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRSPIVK 214 (360)
Q Consensus 161 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 214 (360)
..+...|+||++.|... ..++ |||.||..||..|+.... +||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34567899999998753 4466 999999999999998765 99999998865
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.73 E-value=4.3e-09 Score=91.35 Aligned_cols=48 Identities=19% Similarity=0.511 Sum_probs=40.2
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCC-CCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 214 (360)
+...|+||++.|.. ...++ |||.||..||..|+.... +||+||.++..
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 34689999999865 33467 999999999999998754 89999999865
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.71 E-value=5e-09 Score=86.37 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=40.1
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 214 (360)
...|+||++.|.. ...++ |||.||..||..|+.. ..+||+||.++..
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4679999999865 33466 9999999999999986 7789999999865
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.69 E-value=5.5e-09 Score=77.81 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=40.1
Q ss_pred CCCcccccCCccccCccee-ecCCCCCC-CChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLR-LLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r-~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
++.+|.||++.+.+ .+. .+| |||. |+..|+..|++.+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~--~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN--GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC--EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC--EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 45689999998654 222 238 9999 8999999999988999999998854
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.69 E-value=2.3e-09 Score=88.23 Aligned_cols=48 Identities=27% Similarity=0.744 Sum_probs=40.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 214 (360)
++..|+||++.|.. ...++ |||.||..||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45689999999865 34567 9999999999999976 6789999999864
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=1.3e-08 Score=73.67 Aligned_cols=45 Identities=29% Similarity=0.725 Sum_probs=37.8
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
+...|+||++.|.. .+.++ |||.||..||..| ...||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeec
Confidence 56789999999975 35677 9999999999884 6689999998864
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.63 E-value=1.5e-08 Score=100.40 Aligned_cols=48 Identities=27% Similarity=0.791 Sum_probs=41.4
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCcccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVKI 215 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~ 215 (360)
...|+||++.+.. ...+| |||.||..||..|+. ...+||+||.++...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999998854 56677 999999999999998 688999999998763
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.63 E-value=8.6e-09 Score=100.28 Aligned_cols=52 Identities=21% Similarity=0.685 Sum_probs=40.3
Q ss_pred CCCcccccCCccccCccee----ecCCCCCCCChhhHHHHHhcC-----------CCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLR----LLPKCNHAFHISCIDTWLRSH-----------TNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r----~lp~C~H~FH~~CI~~Wl~~~-----------~tCP~CR~~l~~ 214 (360)
...+|+||++.+..+..+- ..++|+|.||..||.+||+.. .+||.||+++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 5678999999998733331 123699999999999999742 469999998863
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.62 E-value=1.9e-08 Score=79.10 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=41.9
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
+...|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||.++..
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 56889999999876 34577 99999999999999988999999998754
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.60 E-value=1.4e-08 Score=75.42 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=40.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCC-CChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
....|.||++.+.+. .+..+| |||. |+..|+..|.+.+..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 457899999975432 122347 9998 9999999999888899999999854
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.57 E-value=8.5e-09 Score=88.64 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=40.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCC-CCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 214 (360)
+...|+||++.|... ..++ |||.||..||..|+.... +||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 567899999998764 3466 999999999999998664 89999998743
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.56 E-value=3e-08 Score=80.40 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=42.2
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.+...|+||++.|.+ ..+++ |||.|+..||..||..+.+||+||.++..
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 356789999999876 34567 99999999999999988999999998754
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1.2e-08 Score=84.38 Aligned_cols=45 Identities=31% Similarity=0.738 Sum_probs=38.1
Q ss_pred CCCcccccCCccccCcceeec-CCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 163 EGTECSVCLSEFQEDETLRLL-PKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~l-p~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
+...|+||++.|.. . ..+ + |||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~--p-v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE--P-VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS--C-BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC--c-cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 45789999999865 3 344 6 999999999999998 78999999874
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.55 E-value=4.2e-08 Score=79.28 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=41.6
Q ss_pred CCCcccccCCccccCcceeecCCCC-CCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCN-HAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
++..|+||++.|.+ ..+++ || |.|+..||..||..+.+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 56789999999876 33566 99 999999999999988999999998754
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.53 E-value=1.8e-08 Score=77.00 Aligned_cols=44 Identities=25% Similarity=0.702 Sum_probs=37.2
Q ss_pred CCCcccccCCccccCcceeecCCCCCC-CChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
++..|+||++.+.. ...+| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34689999998754 55677 9999 999999999 789999998865
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.50 E-value=7.2e-08 Score=71.18 Aligned_cols=47 Identities=28% Similarity=0.666 Sum_probs=37.1
Q ss_pred CCCcccccCCccccCcceeecCCCC--C---CCChhhHHHHHhc--CCCCCcccCCcc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCN--H---AFHISCIDTWLRS--HTNCPLCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~--H---~FH~~CI~~Wl~~--~~tCP~CR~~l~ 213 (360)
+...|.||+++. ++.+ ++| |. | .||..||.+|+.. +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 567899999973 3334 577 65 4 9999999999964 678999999874
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.42 E-value=6.8e-08 Score=84.70 Aligned_cols=50 Identities=30% Similarity=0.674 Sum_probs=41.3
Q ss_pred CcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC-CCCCcccCCccc
Q 018110 161 LVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH-TNCPLCRSPIVK 214 (360)
Q Consensus 161 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~ 214 (360)
..+...|+||++.|... ..++ |||.||..||..|+... .+||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34567899999998753 3466 99999999999999764 499999998865
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=1.4e-07 Score=75.38 Aligned_cols=47 Identities=21% Similarity=0.530 Sum_probs=38.1
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC------CCCCc--ccCC
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH------TNCPL--CRSP 211 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~------~tCP~--CR~~ 211 (360)
.....|+||++.|.+ .| +++.|||.|+..||..||..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d--PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK--PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS--EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC--CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456789999999875 34 343499999999999999754 48999 9866
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.36 E-value=1.2e-07 Score=75.39 Aligned_cols=48 Identities=21% Similarity=0.675 Sum_probs=39.8
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc--------CCCCCc--ccCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS--------HTNCPL--CRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~--------~~tCP~--CR~~ 211 (360)
+..+|+||++++...+.+.+.+ |+|.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999998776666666 9999999999999863 236999 9988
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=5.4e-07 Score=67.86 Aligned_cols=45 Identities=29% Similarity=0.761 Sum_probs=37.2
Q ss_pred CCCcccccCCccccCcceeecCCCCCC-CChhhHHHHHhcCCCCCcccCCcccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
+...|.||++.+. .+..+| |+|. |+..|+.. ...||+||+++...
T Consensus 14 ~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 4578999999754 466788 9999 99999984 57899999998753
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=2.7e-07 Score=85.90 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=40.7
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-CCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 214 (360)
.....|+||++.|.+ ..+++ |||.|+..||..|+.. ..+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 356789999999875 34577 9999999999999986 4459999998854
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2.5e-07 Score=70.60 Aligned_cols=43 Identities=23% Similarity=0.695 Sum_probs=35.2
Q ss_pred CCcccccCCccccCcceeecCCCCCC-CChhhHHHHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
...|+||++.+.. ...+| |||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4579999998754 45677 9999 99999964 4789999999865
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.15 E-value=4.9e-07 Score=70.05 Aligned_cols=44 Identities=32% Similarity=0.720 Sum_probs=36.7
Q ss_pred CCcccccCCccccCcceeecCCCCCC-CChhhHHHHHhcCCCCCcccCCcccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVKI 215 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~~ 215 (360)
+..|.||++.+.. +..+| |||. |+..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4689999997643 56778 9999 999999987 3999999998764
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.11 E-value=1.3e-06 Score=78.13 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=41.6
Q ss_pred CCcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC-CCCCcccCCccc
Q 018110 160 GLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH-TNCPLCRSPIVK 214 (360)
Q Consensus 160 ~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~ 214 (360)
...+...|+||++.|.+ ..+++ |||.|+..||..|+..+ .+||+||.++..
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34466899999999875 34557 99999999999999864 479999998754
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.97 E-value=2.6e-06 Score=80.21 Aligned_cols=49 Identities=22% Similarity=0.540 Sum_probs=40.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC--CCCCc--ccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH--TNCPL--CRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~--~tCP~--CR~~l~~ 214 (360)
....|+||++.|.+ .|+.+. |||.|+..||..|+..+ .+||+ ||..+..
T Consensus 180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 45689999999965 565555 99999999999999764 46999 9997754
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.96 E-value=1.7e-06 Score=84.77 Aligned_cols=44 Identities=30% Similarity=0.779 Sum_probs=37.4
Q ss_pred CCCcccccCCccccCcceeecCCCCCC-CChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
++..|+||++.+.. ...+| |||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45789999998754 55677 9999 999999998 789999999864
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.87 E-value=3.9e-06 Score=61.89 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=39.9
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
..|+||++.|.+ .+ +++.|||.|...||.+||+.+.+||+++.++..
T Consensus 4 ~~CpIs~~~m~d--PV-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR--PV-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS--EE-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCC--CE-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 579999999975 34 452399999999999999988899999998865
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.85 E-value=6.2e-06 Score=66.60 Aligned_cols=49 Identities=27% Similarity=0.646 Sum_probs=40.6
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCccccCC
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVKINH 217 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~~ 217 (360)
-|.+|--++.. ..|+.| |+|+|+.+|+..|.+ ..++||.|+.++..+..
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 37888777654 678999 999999999999985 57889999999987553
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.80 E-value=1.6e-05 Score=74.00 Aligned_cols=48 Identities=21% Similarity=0.610 Sum_probs=39.5
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCC--CCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHT--NCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~~l~~ 214 (360)
-..|.||.+.+..+. ..++|+|.||..|+..|++.+. .||.|+.++..
T Consensus 180 i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 578999999987652 3345999999999999998654 89999998765
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.81 E-value=0.031 Score=44.48 Aligned_cols=57 Identities=21% Similarity=0.467 Sum_probs=41.9
Q ss_pred CCcCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccccCCCCCC
Q 018110 160 GLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARA 221 (360)
Q Consensus 160 ~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~~~~~ 221 (360)
...+-..|-.|.-... ..|+ . ..|.+|..|+...|.....||+|+.++...-....+
T Consensus 24 s~~G~~nCKsCWf~~k--~LV~-C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~ 80 (99)
T 2ko5_A 24 THLGPQFCKSCWFENK--GLVE-C--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAA 80 (99)
T ss_dssp CCSCCCCCCSSCSCCS--SEEE-C--SSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTS
T ss_pred cccCcccChhhccccC--Ceee-e--cchhhHHHHHHHHHhhccCCcccCCcCCcceecCcC
Confidence 3345578999987643 2332 1 359999999999999999999999999864443333
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.19 E-value=0.062 Score=39.92 Aligned_cols=46 Identities=26% Similarity=0.513 Sum_probs=34.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC----CCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l 212 (360)
....|.||.+. + .+...-.|...||..|+++.|... =.||.|++..
T Consensus 11 ~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999853 3 344555699999999999888653 2599997654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.22 E-value=0.088 Score=41.40 Aligned_cols=35 Identities=17% Similarity=0.439 Sum_probs=26.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTW 198 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~W 198 (360)
++..|.||++.+.......-+. |+|.|+..|+..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 4568999998754433333465 9999999999984
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.10 E-value=0.19 Score=36.47 Aligned_cols=49 Identities=22% Similarity=0.516 Sum_probs=34.9
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-----cCCCCCcccCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-----SHTNCPLCRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~ 211 (360)
+...|+||...+..+......-.|..-||..|+.--.. ..-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 56789999998865554555556999999999864322 23469999753
No 77
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=83.44 E-value=1.1 Score=33.19 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=4.6
Q ss_pred CCCCCChh
Q 018110 186 CNHAFHIS 193 (360)
Q Consensus 186 C~H~FH~~ 193 (360)
|.|.|-+.
T Consensus 59 C~hr~qk~ 66 (70)
T 2klu_A 59 SPHRFQKT 66 (70)
T ss_dssp CCCCCCCC
T ss_pred CcHHHhhc
Confidence 66666543
No 78
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=83.03 E-value=2.6 Score=28.77 Aligned_cols=8 Identities=50% Similarity=0.982 Sum_probs=3.4
Q ss_pred HHHHhccC
Q 018110 100 KFYLRRRS 107 (360)
Q Consensus 100 ~~~~rRr~ 107 (360)
.++.|||+
T Consensus 31 ~~~~RRRr 38 (44)
T 2l2t_A 31 AVYVRRKS 38 (44)
T ss_dssp HHHHHTTC
T ss_pred HHHhhhhh
Confidence 34444443
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.42 E-value=0.57 Score=33.88 Aligned_cols=44 Identities=27% Similarity=0.712 Sum_probs=31.6
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRS 210 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~ 210 (360)
.+..|.||... + .+...-.|...||..|+..=+.. .-.||.|+.
T Consensus 10 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 46789999873 3 44445569999999999985543 235999965
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.42 E-value=0.44 Score=34.47 Aligned_cols=46 Identities=28% Similarity=0.618 Sum_probs=31.9
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~l 212 (360)
.+..|.||.+. + .+...-.|...||..|+.+-|.. .=.||.|+...
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 46779999852 3 34444469999999999865543 22499997654
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=82.22 E-value=0.49 Score=41.97 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=35.4
Q ss_pred CCcccccCCccccCcc---eeecCCCCCCCChhhHHH------HHh-----cCCCCCcccCCc
Q 018110 164 GTECSVCLSEFQEDET---LRLLPKCNHAFHISCIDT------WLR-----SHTNCPLCRSPI 212 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~---~r~lp~C~H~FH~~CI~~------Wl~-----~~~tCP~CR~~l 212 (360)
+..|+||...|..++. ....-.|..-||..|+.- -+. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3569999999988763 555556999999999732 111 156799997753
No 82
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=81.70 E-value=3.6 Score=29.25 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKF 101 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~ 101 (360)
++.||++++++.++++.++..++.++
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55666666666666666665555554
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.81 E-value=0.42 Score=42.75 Aligned_cols=46 Identities=30% Similarity=0.550 Sum_probs=33.8
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC----CCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l 212 (360)
.+..|.+|... + .+.....|...||..|+.+.+... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45779999853 3 455566799999999998876532 3599997653
No 84
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=80.13 E-value=1.7 Score=29.62 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=3.0
Q ss_pred HHHhccC
Q 018110 101 FYLRRRS 107 (360)
Q Consensus 101 ~~~rRr~ 107 (360)
++.|||+
T Consensus 33 ~~~RRr~ 39 (44)
T 2ks1_B 33 LFMRRRH 39 (44)
T ss_dssp HHHHTTT
T ss_pred HHhhhhH
Confidence 4444443
No 85
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=78.82 E-value=3.5 Score=29.34 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKF 101 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~ 101 (360)
++.||++++++.++++.++..++.++
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666666666666666666555554
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.50 E-value=0.49 Score=41.45 Aligned_cols=46 Identities=33% Similarity=0.608 Sum_probs=33.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC----CCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l 212 (360)
.+..|.||... ++ +...-.|.-.||..|+.+-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 43 44555699999999998766532 3599998654
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.19 E-value=0.87 Score=31.37 Aligned_cols=44 Identities=36% Similarity=0.816 Sum_probs=29.3
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccC
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRS 210 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~ 210 (360)
.|.||...-..+ .+...-.|...||..|+++=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998754333 34444469999999999764432 224999964
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.51 E-value=0.42 Score=33.88 Aligned_cols=45 Identities=29% Similarity=0.692 Sum_probs=30.8
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC----CCCCcccC
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRS 210 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 210 (360)
..+..|.||... + .+...-.|...||..|+.+=|... -.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356789999874 3 344444699999999998655432 24888753
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=74.70 E-value=6.9 Score=30.40 Aligned_cols=35 Identities=23% Similarity=0.584 Sum_probs=23.9
Q ss_pred cCCCcccccCCccccCcceeecCCCCCCCChhhHHHH
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTW 198 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~W 198 (360)
..+..|.||-. |..++.. ...-|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-cccccee-ccccccccccHhhcccc
Confidence 46788999963 3333322 22249999999999996
No 90
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=74.01 E-value=5.3 Score=27.22 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKFYLR 104 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~~~r 104 (360)
.+..++++ +++++++.+.+.+++|..+.
T Consensus 13 ~Ia~~vVG-vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 13 SIISAVVG-ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHH-HHHHHHHHHHHHhheehhhh
Confidence 45555555 33444444444555554443
No 91
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.48 E-value=16 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.513 Sum_probs=38.5
Q ss_pred CCCcccccCCcccc---CcceeecCCCCCCCChhhHHHHHh-cCCCCCcccCCcccc
Q 018110 163 EGTECSVCLSEFQE---DETLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRSPIVKI 215 (360)
Q Consensus 163 ~~~~C~ICl~~~~~---~~~~r~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~ 215 (360)
....|.||-+++-. ++.......|+--.|..|.+-=.+ .+..||-|+..+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 34689999998643 333343445888889999876543 578899999998754
No 92
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=73.10 E-value=0.47 Score=35.48 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=34.6
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccCCcc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~l~ 213 (360)
+...|.||..... ++.+...-.|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4457999987753 3344455569999999999765432 335999977654
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.27 E-value=1 Score=36.34 Aligned_cols=45 Identities=27% Similarity=0.682 Sum_probs=30.8
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccC
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRS 210 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~ 210 (360)
.|.||...-...+.+...-.|...||..|+++=|.. .=.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688998653333345455569999999999875543 225999974
No 94
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=71.27 E-value=2.1 Score=31.40 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=26.4
Q ss_pred CCCcccccCCccccCcceeecC-CCCCCCChhhHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLP-KCNHAFHISCID 196 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp-~C~H~FH~~CI~ 196 (360)
....|.+|...+..++..+..- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4567999999987776666665 699999999973
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=70.51 E-value=0.45 Score=34.18 Aligned_cols=47 Identities=28% Similarity=0.721 Sum_probs=32.8
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccCCcc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~l~ 213 (360)
.+..|.||... + .+.....|.-.||..|+.+=+.. .-.||.|+....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45789999874 3 34444569999999999865543 224999976544
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=69.61 E-value=0.8 Score=33.56 Aligned_cols=45 Identities=31% Similarity=0.674 Sum_probs=31.6
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~ 211 (360)
.+..|.||... + .+.....|.-.||..|+.+=|.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 56789999863 3 34444569999999999865543 2249999643
No 97
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=68.79 E-value=3.2 Score=34.63 Aligned_cols=30 Identities=3% Similarity=-0.117 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018110 75 RKFLIITASALATTIVAVLCYVVFVKFYLR 104 (360)
Q Consensus 75 s~ilIiii~iL~~v~llll~~~llv~~~~r 104 (360)
..++.|++++.++.|+++.++.-++|-.++
T Consensus 51 ~~ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 51 LEALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 355666666666666666655555554443
No 98
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.96 E-value=1.6 Score=34.98 Aligned_cols=46 Identities=26% Similarity=0.592 Sum_probs=30.5
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCR 209 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR 209 (360)
.+..|.||.+.=+..+ +..-..|+..||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 5678999987633222 2344469999999999887642 22366664
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=67.87 E-value=3.1 Score=32.48 Aligned_cols=45 Identities=29% Similarity=0.655 Sum_probs=32.2
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcC----CCCCcccCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 211 (360)
.+..|.||... ++ +.....|.-.||..|+.+=|... -.||.|+..
T Consensus 24 n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 46789999964 33 44445699999999997765432 259999754
No 100
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.69 E-value=3 Score=31.46 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=32.7
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-----cCCCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-----SHTNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l 212 (360)
+...| ||...+.........-.|..-||..|+.---. ..-.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34567 99988764444444556999999999853211 244699998654
No 101
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=66.52 E-value=1.7 Score=30.26 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=30.6
Q ss_pred CcccccCCccccCcceeecC-CCCCCCChhhHHHHH----hcCCCCCccc
Q 018110 165 TECSVCLSEFQEDETLRLLP-KCNHAFHISCIDTWL----RSHTNCPLCR 209 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp-~C~H~FH~~CI~~Wl----~~~~tCP~CR 209 (360)
-.|.||...+..+......- .|.--||..|+.--. ...-.||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 35889999886655555554 588899999975321 2456699885
No 102
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=65.77 E-value=6.9 Score=26.36 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKF 101 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~ 101 (360)
++.+|++++++.++++.++..++.++
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56666677776666666665555554
No 103
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=64.53 E-value=2.1 Score=37.85 Aligned_cols=44 Identities=30% Similarity=0.687 Sum_probs=30.8
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccCC
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRSP 211 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~ 211 (360)
+..|.+|... ++ +...-.|.-.||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999854 33 4344469999999999764432 2259999765
No 104
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=63.90 E-value=2.3 Score=32.98 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=33.4
Q ss_pred CCCcccccCCcc-ccCcceeecCCCCCCCChhhHHHHHh--cCCCCCcccCCc
Q 018110 163 EGTECSVCLSEF-QEDETLRLLPKCNHAFHISCIDTWLR--SHTNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~-~~~~~~r~lp~C~H~FH~~CI~~Wl~--~~~tCP~CR~~l 212 (360)
++..|.||...- ...+.+.....|.-.||..|+..-+. ..-.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 457899999753 23335555557999999999975332 122599996543
No 105
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=63.53 E-value=9.7 Score=25.89 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
.+...+++-++.++++++...+|+|..++++
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4444455545555555555556666555444
No 106
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.26 E-value=1.3 Score=34.40 Aligned_cols=51 Identities=20% Similarity=0.468 Sum_probs=35.5
Q ss_pred CCcccccCCcccc-CcceeecCCCCCCCChhhHHHHHhc--------CCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQE-DETLRLLPKCNHAFHISCIDTWLRS--------HTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~-~~~~r~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~~l~~ 214 (360)
+..|.||...-.. ...+...-.|...||..|+.+=|.. .=.|+.|+.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4679999976432 2355556679999999999875531 2359999776543
No 107
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.08 E-value=1.2 Score=34.95 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=32.9
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~ 211 (360)
+...|.||...-.. ..+...-.|...||..|+.+=|.. .=.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45679999976433 344455569999999999854432 2249999654
No 108
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=62.06 E-value=2.9 Score=33.45 Aligned_cols=47 Identities=30% Similarity=0.592 Sum_probs=33.3
Q ss_pred CcccccCCccccCcceeecC-CCCCCCChhhHHHH------H----hcCCCCCcccCC
Q 018110 165 TECSVCLSEFQEDETLRLLP-KCNHAFHISCIDTW------L----RSHTNCPLCRSP 211 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp-~C~H~FH~~CI~~W------l----~~~~tCP~CR~~ 211 (360)
..|.||...+.........- .|.--||..|+.-- + ...-.||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 56999999986655555553 58999999997421 1 023469999765
No 109
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=61.75 E-value=4.7 Score=26.15 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 018110 79 IITASALA 86 (360)
Q Consensus 79 Iiii~iL~ 86 (360)
.|..+++.
T Consensus 9 sIaagVvg 16 (35)
T 1iij_A 9 FIIATVVG 16 (35)
T ss_dssp HHHHHHHH
T ss_pred EeHHHHHH
Confidence 33334333
No 110
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.18 E-value=1.6 Score=33.15 Aligned_cols=45 Identities=31% Similarity=0.693 Sum_probs=29.9
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-----CCCCCcccC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-----HTNCPLCRS 210 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 210 (360)
..|.||...-.. ..+...-.|...||..|+++=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 478999864323 344455569999999999854432 225888864
No 111
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=59.99 E-value=1.7 Score=32.24 Aligned_cols=44 Identities=34% Similarity=0.746 Sum_probs=28.5
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhc-----CCCCCcccC
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-----HTNCPLCRS 210 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 210 (360)
.|.||...-.. ..+...-.|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56788754322 344445569999999999854432 225888864
No 112
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=58.86 E-value=22 Score=23.89 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018110 77 FLIITASALATTIVAVLCYVVFVKFYL 103 (360)
Q Consensus 77 ilIiii~iL~~v~llll~~~llv~~~~ 103 (360)
++.|+.++++.++++-+++.+++|++.
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~~~ 35 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444445555544
No 113
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=58.02 E-value=10 Score=25.74 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
.+...+++.+++++++++.+.+|++..++++
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 3444555544444455555556666554443
No 114
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=58.00 E-value=19 Score=23.85 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 018110 76 KFLIITASALATTIVAVL 93 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll 93 (360)
.+.+|++++.+.++..++
T Consensus 11 ~i~lII~~vmaGiIG~Il 28 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTIL 28 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 444455555554444433
No 115
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=57.73 E-value=2.9 Score=32.99 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=29.6
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhc---CCCCCcccC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRS 210 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~ 210 (360)
..| ||-.....+. +...-.|.-.||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 8887765554 4445569999999998653221 235999963
No 116
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=57.62 E-value=5 Score=28.85 Aligned_cols=49 Identities=20% Similarity=0.566 Sum_probs=33.7
Q ss_pred CCCcccccCCcccc-CcceeecCCCCCCCChhhHHHHHh-------cCCCCCcccCC
Q 018110 163 EGTECSVCLSEFQE-DETLRLLPKCNHAFHISCIDTWLR-------SHTNCPLCRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~-~~~~r~lp~C~H~FH~~CI~~Wl~-------~~~tCP~CR~~ 211 (360)
++..|.||...... ...+.....|.-.||..|+.+=+. ..-.||.|+..
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 56789999986532 345555567999999999876432 22359988654
No 117
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=57.27 E-value=1.7 Score=37.40 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=33.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHH-----hcCCCCCcccCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWL-----RSHTNCPLCRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl-----~~~~tCP~CR~~ 211 (360)
+...| ||...+..+......-.|.-.||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9998875444455555699999999985321 124469999764
No 118
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.85 E-value=7.7 Score=30.36 Aligned_cols=45 Identities=29% Similarity=0.602 Sum_probs=28.4
Q ss_pred CCCcccccCCccccCcceeecCC--CC-CCCChhhHHHHHhc----CCCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPK--CN-HAFHISCIDTWLRS----HTNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~~l 212 (360)
+...| ||..... ++ +...-. |. ..||..||. |.. .-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567 9988653 33 333334 55 689999997 432 33599997654
No 119
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=56.67 E-value=1.7 Score=33.04 Aligned_cols=44 Identities=34% Similarity=0.746 Sum_probs=28.8
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhc----C-CCCCcccC
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----H-TNCPLCRS 210 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~-~tCP~CR~ 210 (360)
.|.||...-.. +.+...-.|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 57777765333 344444469999999999875542 1 35998875
No 120
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=56.37 E-value=6.5 Score=32.80 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=31.4
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHH------hc-----CCCCCcccCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWL------RS-----HTNCPLCRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl------~~-----~~tCP~CR~~ 211 (360)
.+..|.||.+. ..+.....|...||..||.+-+ +. .=.|++|+..
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 45679999963 3444555699999999999752 11 2359999654
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=55.65 E-value=15 Score=29.40 Aligned_cols=47 Identities=26% Similarity=0.457 Sum_probs=29.7
Q ss_pred CCCcccccCCccc-----cCcceeecCCCCCCCChhhHHHH------H-hcCCCCCccc
Q 018110 163 EGTECSVCLSEFQ-----EDETLRLLPKCNHAFHISCIDTW------L-RSHTNCPLCR 209 (360)
Q Consensus 163 ~~~~C~ICl~~~~-----~~~~~r~lp~C~H~FH~~CI~~W------l-~~~~tCP~CR 209 (360)
....|.+|+..-. .++.+..-..|+..||..||..+ + ...=.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3467999987531 23345555569999999999532 2 2233477765
No 122
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.07 E-value=14 Score=28.02 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018110 82 ASALATTIVAVLCYVVFVK 100 (360)
Q Consensus 82 i~iL~~v~llll~~~llv~ 100 (360)
+++++.++++.+++.++++
T Consensus 15 ~gvi~gilliGllllliwk 33 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=53.69 E-value=7.9 Score=31.17 Aligned_cols=46 Identities=22% Similarity=0.530 Sum_probs=29.8
Q ss_pred cCCCcccccCCccccCcceeecC--CCCCCCChhhHHHHHhcC----CCCCcccCCcc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLP--KCNHAFHISCIDTWLRSH----TNCPLCRSPIV 213 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp--~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l~ 213 (360)
..+..|.+|.+ .+ .+...- .|...||..|+. |... =.||.|+-.+-
T Consensus 13 ~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 46678999984 23 343333 488999999997 5432 24887754443
No 124
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.21 E-value=8 Score=28.67 Aligned_cols=45 Identities=29% Similarity=0.602 Sum_probs=28.5
Q ss_pred CCCcccccCCccccCcceeecCC--CC-CCCChhhHHHHHhc----CCCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPK--CN-HAFHISCIDTWLRS----HTNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~~l 212 (360)
+...| ||..... ++ +...-. |. ..||..||. |.. .-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8987643 33 333334 55 689999997 433 23599997643
No 125
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=52.94 E-value=24 Score=26.09 Aligned_cols=7 Identities=29% Similarity=0.378 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 018110 80 ITASALA 86 (360)
Q Consensus 80 iii~iL~ 86 (360)
|+++.++
T Consensus 12 ivlGg~~ 18 (70)
T 2klu_A 12 IVLGGVA 18 (70)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
Confidence 3333333
No 126
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=52.90 E-value=2.9 Score=30.82 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=30.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh---cCCCCCcccC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR---SHTNCPLCRS 210 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~ 210 (360)
+...| ||...+. ++.....-.|..-||..|+.---. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 55678 9988765 443444446999999999854221 2345888864
No 127
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=57.06 E-value=3.1 Score=27.58 Aligned_cols=22 Identities=9% Similarity=0.557 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018110 78 LIITASALATTIVAVLCYVVFV 99 (360)
Q Consensus 78 lIiii~iL~~v~llll~~~llv 99 (360)
+.++.++++.++++++++++++
T Consensus 8 ~~vl~avlal~vi~iisLIiLi 29 (39)
T 2l6w_A 8 VVVISAILALVVLTIISLIILI 29 (39)
Confidence 3334444444444444444443
No 128
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=50.98 E-value=12 Score=31.59 Aligned_cols=44 Identities=25% Similarity=0.493 Sum_probs=31.9
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-----------cCCCCCcccC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-----------SHTNCPLCRS 210 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-----------~~~tCP~CR~ 210 (360)
.+..|.||.+. + .+...-.|...||..||.+=+. ..-.||+|+.
T Consensus 62 ~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 46789999963 3 3445556999999999997653 1235999974
No 129
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=50.90 E-value=4.3 Score=37.09 Aligned_cols=45 Identities=33% Similarity=0.726 Sum_probs=26.9
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHhc-----CCCCCcccC
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS-----HTNCPLCRS 210 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 210 (360)
..|.+|...-.. ..+...-.|...||..|+++=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 458888764322 344455569999999999864432 225999965
No 130
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=48.84 E-value=3.9 Score=24.95 Aligned_cols=18 Identities=39% Similarity=0.949 Sum_probs=11.5
Q ss_pred CCCCcccCCCCCCCCCCCCCccc
Q 018110 23 DICPSYCDLSDTSSFCSPPCLTS 45 (360)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~c~~~ 45 (360)
..||+-|. ++|++.|.+-
T Consensus 6 gtcpsgcs-----gdcypeckpg 23 (31)
T 2hm3_A 6 GTCPSGCS-----GDCYPECKPG 23 (31)
T ss_dssp -CCCTTCC-----GGGTTTTCHH
T ss_pred ccCCCCcC-----ccccCccCCC
Confidence 46887776 6777777543
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=48.25 E-value=12 Score=27.62 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=24.5
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHH
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCID 196 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~ 196 (360)
+..|.+|...|..-..-.....||.+|+..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 357999999997644333444699999999954
No 132
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=46.59 E-value=19 Score=27.73 Aligned_cols=38 Identities=13% Similarity=0.407 Sum_probs=28.6
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS 201 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~ 201 (360)
...|.+|.+.+++..-|..-..=.|.||..|-+..+++
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 46799999999886555322233599999999999864
No 133
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=45.57 E-value=12 Score=28.84 Aligned_cols=52 Identities=21% Similarity=0.440 Sum_probs=34.6
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh------cCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR------SHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~------~~~tCP~CR~~l~~ 214 (360)
+...|.+|...|..-..-.....||++|+..|...+.. ....|-.|...+..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 34679999999976443344456999999999766532 12347666555543
No 134
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.25 E-value=12 Score=30.81 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=25.7
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDT 197 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~ 197 (360)
+...|.+|...|..-..-.....||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34689999999976443334456999999999543
No 135
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.05 E-value=13 Score=29.76 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=23.5
Q ss_pred CcccccCCcccc------CcceeecCCCCCCCChhhHHHH
Q 018110 165 TECSVCLSEFQE------DETLRLLPKCNHAFHISCIDTW 198 (360)
Q Consensus 165 ~~C~ICl~~~~~------~~~~r~lp~C~H~FH~~CI~~W 198 (360)
..|.||+..-.. ++.+..-..|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999875421 2344444469999999999765
No 136
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=45.02 E-value=13 Score=28.67 Aligned_cols=52 Identities=17% Similarity=0.359 Sum_probs=35.2
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-------cCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-------SHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-------~~~tCP~CR~~l~~ 214 (360)
+...|.+|...|..-..--....||++|+..|....+. ....|-.|...+..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 45689999999976543334446999999999765331 22347777665554
No 137
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.60 E-value=6.3 Score=29.28 Aligned_cols=46 Identities=22% Similarity=0.493 Sum_probs=30.5
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHH------H---hcCCCCCcccCC
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTW------L---RSHTNCPLCRSP 211 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~W------l---~~~~tCP~CR~~ 211 (360)
...| ||...+..+. ....-.|..-||..|+.-- + ...-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3557 8988875433 3344459999999998421 1 245679999754
No 138
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=44.08 E-value=14 Score=28.02 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=26.7
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTW 198 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~W 198 (360)
+...|.+|...|..-..-.....||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999999765433344469999999996553
No 139
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=44.01 E-value=14 Score=27.91 Aligned_cols=35 Identities=29% Similarity=0.587 Sum_probs=26.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDT 197 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~ 197 (360)
+...|.+|...|..-..-.....||.+|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44679999999976443334446999999999654
No 140
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=43.04 E-value=16 Score=27.09 Aligned_cols=48 Identities=25% Similarity=0.489 Sum_probs=32.2
Q ss_pred CCCcccccCCcc-ccCcceeecCCCCCCCChhhHHHHHh--cCCCCCcccC
Q 018110 163 EGTECSVCLSEF-QEDETLRLLPKCNHAFHISCIDTWLR--SHTNCPLCRS 210 (360)
Q Consensus 163 ~~~~C~ICl~~~-~~~~~~r~lp~C~H~FH~~CI~~Wl~--~~~tCP~CR~ 210 (360)
.+..|.||...- ...+.+...-.|.-.||..|+..-.. ..=.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 567899998753 23345555557999999999875321 1224888854
No 141
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.00 E-value=3.4 Score=34.04 Aligned_cols=48 Identities=19% Similarity=0.453 Sum_probs=32.4
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCC
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSP 211 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 211 (360)
...|..|...|..-..-.....||.+|+..|..........|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 467999999997644334445699999999977665556668888543
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.59 E-value=12 Score=33.47 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=26.3
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDT 197 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~ 197 (360)
++..|.+|...|..-..-.....||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45799999999975443344556999999999554
No 143
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.77 E-value=14 Score=33.35 Aligned_cols=36 Identities=19% Similarity=0.451 Sum_probs=27.1
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTW 198 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~W 198 (360)
.+..|.+|...|..-..-.....||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456899999999865444445579999999996543
No 144
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=40.69 E-value=18 Score=39.67 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=40.5
Q ss_pred cCCCcccccCCccccCcceeecCCCC-CCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 162 VEGTECSVCLSEFQEDETLRLLPKCN-HAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 162 ~~~~~C~ICl~~~~~~~~~r~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
.+...|+|-++.|.+ ..++| -| +.|-..+|.+||..+.+||+=|.++..
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345689999999875 34567 66 689999999999999999999988864
No 145
>1sop_A Mini-collagen; collagen oxidative refolding, structural protein; NMR {Synthetic} SCOP: g.71.1.1 PDB: 1sp7_A
Probab=40.59 E-value=16 Score=21.84 Aligned_cols=11 Identities=45% Similarity=1.621 Sum_probs=7.8
Q ss_pred CCCcccCCccc
Q 018110 40 PPCLTSCPSYC 50 (360)
Q Consensus 40 ~~c~~~cp~~~ 50 (360)
-.|.++||++|
T Consensus 9 tqCvpsCp~yC 19 (26)
T 1sop_A 9 AQCVPTCPQYC 19 (26)
T ss_dssp TCCCTTSCSTT
T ss_pred ccccCCCCccc
Confidence 34677888887
No 146
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=40.25 E-value=46 Score=25.15 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018110 76 KFLIITASALATTIVAVLCYVVFVKFYLRRR 106 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~~llv~~~~rRr 106 (360)
.++-++.+++++.++++++.-+++.+.-||.
T Consensus 13 Iv~gvi~gilliGllllliwk~~~~i~DrrE 43 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWKLLITIHDRKE 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544433
No 147
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=38.93 E-value=51 Score=19.70 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 018110 76 KFLIITASALATTIVAVLCY 95 (360)
Q Consensus 76 ~ilIiii~iL~~v~llll~~ 95 (360)
+++..++.++..+...++++
T Consensus 3 piVA~~lLIviav~aaVlly 22 (26)
T 3j1r_A 3 PVIATLLLILIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44443333333333333333
No 148
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.87 E-value=17 Score=27.48 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=23.8
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhH
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCI 195 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI 195 (360)
+...|.+|...|..-..--....||.+|+..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 346899999999754333334469999999883
No 149
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=38.81 E-value=26 Score=32.43 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=7.5
Q ss_pred cCCcccccccccccCCC
Q 018110 45 SCPSYCHNFLQSLIPTP 61 (360)
Q Consensus 45 ~cp~~~~~~~~~~~~~p 61 (360)
.+|.|+ .+.+|+|
T Consensus 9 ~~~~~~----~~~~~~~ 21 (262)
T 2gsm_B 9 GRPQPG----GTGFQPS 21 (262)
T ss_dssp ESCCTT----CCSCCCC
T ss_pred cCCCHH----HccCCCC
Confidence 367776 4555544
No 150
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=37.63 E-value=4.1 Score=32.46 Aligned_cols=45 Identities=20% Similarity=0.558 Sum_probs=29.6
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccCC
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRSP 211 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~ 211 (360)
.|.||...-.. +.+.....|...||..|+++=|.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57788765433 234445569999999999864432 2348888543
No 151
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=36.87 E-value=24 Score=34.51 Aligned_cols=46 Identities=17% Similarity=0.460 Sum_probs=30.9
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHh---c--CCCCCcccCCccc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR---S--HTNCPLCRSPIVK 214 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~---~--~~tCP~CR~~l~~ 214 (360)
..|+|-+..|.. .+|-.. |.|.-|.+ +..||. + .-.||+|...+..
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccCH
Confidence 479988887655 577776 99985444 344443 2 3359999887754
No 152
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=36.51 E-value=6.9 Score=27.92 Aligned_cols=43 Identities=30% Similarity=0.619 Sum_probs=27.0
Q ss_pred CCCcccccCCccccCcceeecCC--CC-CCCChhhHHHHHhc----CCCCCcccC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPK--CN-HAFHISCIDTWLRS----HTNCPLCRS 210 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 210 (360)
+..-| ||.... .+ .+...-. |. ..||..|+. |.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34556 898764 23 3444444 65 689999997 433 235998864
No 153
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=36.40 E-value=25 Score=34.24 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=30.7
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHHh---c--CCCCCcccCCccc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR---S--HTNCPLCRSPIVK 214 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~---~--~~tCP~CR~~l~~ 214 (360)
..|+|=+..+.. .+|-.. |.|.=|.+ +..||. + .-.||+|...+..
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCC-HHHHHHHHhhCCCeECCCCCcccCH
Confidence 469988887755 567676 99984433 344443 2 3359999988754
No 154
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=36.30 E-value=15 Score=30.66 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCcccccCCccc-cCcceeecCCCCCCCChhhH
Q 018110 163 EGTECSVCLSEFQ-EDETLRLLPKCNHAFHISCI 195 (360)
Q Consensus 163 ~~~~C~ICl~~~~-~~~~~r~lp~C~H~FH~~CI 195 (360)
....|++|...|. ....-+....|.|.+|..|=
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 5678999999994 33344556679999999883
No 155
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=35.78 E-value=3.1 Score=30.51 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=26.5
Q ss_pred CcccccCCccccCcceeec-CCCCCCCChhhHHHHH---h-----cCCCCCcccC
Q 018110 165 TECSVCLSEFQEDETLRLL-PKCNHAFHISCIDTWL---R-----SHTNCPLCRS 210 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~l-p~C~H~FH~~CI~~Wl---~-----~~~tCP~CR~ 210 (360)
..| ||-.....+..|.-- +.|..-||..|+.--- . ..-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 446 897665555443321 1488899999973210 0 1345999974
No 156
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=34.24 E-value=7.3 Score=27.81 Aligned_cols=42 Identities=26% Similarity=0.605 Sum_probs=25.9
Q ss_pred CCcccccCCccccCcceeecCC--CC-CCCChhhHHHHHhc----CCCCCcccC
Q 018110 164 GTECSVCLSEFQEDETLRLLPK--CN-HAFHISCIDTWLRS----HTNCPLCRS 210 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 210 (360)
..-| ||..... + .+...-. |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4556 8987642 3 3433334 44 679999997 443 235998854
No 157
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=33.71 E-value=19 Score=22.10 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=20.6
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhH
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCI 195 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI 195 (360)
..|+.|-..+-..+.+.. -|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 469999888776655542 5788999884
No 158
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=33.33 E-value=45 Score=24.58 Aligned_cols=19 Identities=0% Similarity=-0.165 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018110 85 LATTIVAVLCYVVFVKFYL 103 (360)
Q Consensus 85 L~~v~llll~~~llv~~~~ 103 (360)
++.+++++.+++++.+-++
T Consensus 24 fA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 24 FGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHTTHHH
T ss_pred hHHHHHHHHHHHHHcCccc
Confidence 3334444444445544343
No 159
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=31.93 E-value=9.7 Score=36.97 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHh-------cCCCCCcccCCc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLR-------SHTNCPLCRSPI 212 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~-------~~~tCP~CR~~l 212 (360)
+...|.+|...|..-..-.....||++||..|...++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34679999999875433333446999999999877652 134477775544
No 160
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=30.83 E-value=92 Score=23.16 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018110 84 ALATTIVAVLCYVVFVKFYL 103 (360)
Q Consensus 84 iL~~v~llll~~~llv~~~~ 103 (360)
+++.+++++.+++++...|+
T Consensus 22 ifA~vLfi~GI~iilS~Kck 41 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccc
Confidence 33344444444555554444
No 161
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.56 E-value=15 Score=26.91 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=31.3
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHH----hcCCCCCcccCC
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWL----RSHTNCPLCRSP 211 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl----~~~~tCP~CR~~ 211 (360)
...| ||......++.....-.|..-||..|+.--- ...-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3568 7988766555454555699999999976431 123459999653
No 162
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.52 E-value=26 Score=25.13 Aligned_cols=42 Identities=26% Similarity=0.738 Sum_probs=29.7
Q ss_pred CcccccCCccccCcceeecCCCCCCCChhhHHHHH-hcCCCCCcc
Q 018110 165 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWL-RSHTNCPLC 208 (360)
Q Consensus 165 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl-~~~~tCP~C 208 (360)
..|-.|...|... .....++|++.|+.+| +..+ ..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4599999998542 2345778999999999 3332 334579987
No 163
>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum}
Probab=28.04 E-value=22 Score=23.11 Aligned_cols=19 Identities=32% Similarity=0.955 Sum_probs=14.7
Q ss_pred CCcccCCCCCCCCCCC--CCcccCCcccc
Q 018110 25 CPSYCDLSDTSSFCSP--PCLTSCPSYCH 51 (360)
Q Consensus 25 ~~~~~~~~~~~~~~~~--~c~~~cp~~~~ 51 (360)
|-++|. ++.+|.. +| +||.
T Consensus 2 CN~yC~---~NsDC~GITlC-----~wCK 22 (39)
T 2hlg_A 2 CNEPCS---SNSDCIGITLC-----QFCK 22 (39)
T ss_dssp CSCBCS---SSGGGSSSSSC-----CEEE
T ss_pred cccccc---CCCCeeeEEec-----ccce
Confidence 677776 5678888 88 8995
No 164
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=27.31 E-value=6.4 Score=31.72 Aligned_cols=46 Identities=22% Similarity=0.642 Sum_probs=30.1
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhc----CCCCCcccCCc
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRSPI 212 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~l 212 (360)
.|.||...-..+ .+...-.|...||..|+.+=|.. .=.||.|+..+
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 588888754333 44444569999999999864432 22488886544
No 165
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=26.79 E-value=17 Score=21.28 Aligned_cols=7 Identities=43% Similarity=1.222 Sum_probs=4.1
Q ss_pred cCCcccc
Q 018110 45 SCPSYCH 51 (360)
Q Consensus 45 ~cp~~~~ 51 (360)
.||-.||
T Consensus 14 lcpdvcy 20 (26)
T 1rpq_W 14 LCPDVCY 20 (26)
T ss_dssp CSCGGGC
T ss_pred cCCceEE
Confidence 4566665
No 166
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.97 E-value=8.1 Score=24.81 Aligned_cols=16 Identities=25% Similarity=0.706 Sum_probs=10.6
Q ss_pred CCCcccccCCccccCc
Q 018110 163 EGTECSVCLSEFQEDE 178 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~ 178 (360)
++..|+||+..+...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3467888887775543
No 167
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=25.55 E-value=26 Score=27.97 Aligned_cols=12 Identities=33% Similarity=1.079 Sum_probs=10.8
Q ss_pred CCChhhHHHHHh
Q 018110 189 AFHISCIDTWLR 200 (360)
Q Consensus 189 ~FH~~CI~~Wl~ 200 (360)
-||..||.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 168
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=25.51 E-value=27 Score=24.44 Aligned_cols=42 Identities=19% Similarity=0.482 Sum_probs=30.7
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
....|+.|-..+...+.+... =+..||..|+ .|-.|..+|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 346899999998876654322 4678998885 68888888764
No 169
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=25.32 E-value=26 Score=27.88 Aligned_cols=12 Identities=33% Similarity=0.958 Sum_probs=10.8
Q ss_pred CCChhhHHHHHh
Q 018110 189 AFHISCIDTWLR 200 (360)
Q Consensus 189 ~FH~~CI~~Wl~ 200 (360)
-||..||.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 170
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.20 E-value=37 Score=23.93 Aligned_cols=41 Identities=20% Similarity=0.484 Sum_probs=28.8
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
...|+.|-+.+...+.+... -+..||..|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCC
Confidence 35799999998875433322 4678888874 58888887753
No 171
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.84 E-value=17 Score=28.25 Aligned_cols=43 Identities=21% Similarity=0.473 Sum_probs=26.6
Q ss_pred CCCcccccCCccccCcceeecCCCC---CCCChhhHHHHHhc----CCCCCc-ccC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCN---HAFHISCIDTWLRS----HTNCPL-CRS 210 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~---H~FH~~CI~~Wl~~----~~tCP~-CR~ 210 (360)
+...| ||..... ++ +...-.|. ..||..||. |.. .-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 44567 9987533 33 33333454 689999986 322 335999 874
No 172
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.61 E-value=58 Score=22.88 Aligned_cols=40 Identities=23% Similarity=0.608 Sum_probs=27.5
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
...|+.|-+.+...+.+... -+..||..|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 46799999888764322222 4678998874 5888888874
No 173
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=24.55 E-value=14 Score=26.52 Aligned_cols=43 Identities=33% Similarity=0.627 Sum_probs=26.5
Q ss_pred CCCcccccCCccccCcceeecCC--CC-CCCChhhHHHHHhc----CCCCCcccC
Q 018110 163 EGTECSVCLSEFQEDETLRLLPK--CN-HAFHISCIDTWLRS----HTNCPLCRS 210 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 210 (360)
+..-| ||.... .+ .+...-. |. ..||..||. |.. .-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34556 898763 23 3434334 44 789999987 332 235999864
No 174
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.60 E-value=57 Score=22.87 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=29.0
Q ss_pred CCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 164 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 164 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
...|+.|-..+...+.+.. . -+..||..|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE-Y-GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC-S-TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE-E-CccccCcccC--------eECCCCCcCCC
Confidence 4679999999876533322 2 5788998884 58888887753
No 175
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.52 E-value=37 Score=28.89 Aligned_cols=47 Identities=21% Similarity=0.395 Sum_probs=29.6
Q ss_pred CCCcccccCCccccC-cceeecCCCCCCCChhhHHHHHhcCC--CCCcccC
Q 018110 163 EGTECSVCLSEFQED-ETLRLLPKCNHAFHISCIDTWLRSHT--NCPLCRS 210 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~-~~~r~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~ 210 (360)
.+..|++|...|.-- ..-++...|.|.+|..|= .|+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 568899999987432 223445569999999995 2332222 2666643
No 176
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=22.53 E-value=69 Score=30.16 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=5.9
Q ss_pred CcccccccccccCCC
Q 018110 47 PSYCHNFLQSLIPTP 61 (360)
Q Consensus 47 p~~~~~~~~~~~~~p 61 (360)
|.|| .+.|++|
T Consensus 42 ~~~~----~l~fqd~ 52 (298)
T 3hb3_B 42 PVNG----GMNFQPA 52 (298)
T ss_dssp CCTT----CCSCSCC
T ss_pred CChh----hcCCCCC
Confidence 5666 3555544
No 177
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.20 E-value=41 Score=24.94 Aligned_cols=47 Identities=21% Similarity=0.492 Sum_probs=29.9
Q ss_pred CCCcccccCCccccCcceeecC--CCCCCCChhhHHHHHh---------cCCCCCcccCC
Q 018110 163 EGTECSVCLSEFQEDETLRLLP--KCNHAFHISCIDTWLR---------SHTNCPLCRSP 211 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp--~C~H~FH~~CI~~Wl~---------~~~tCP~CR~~ 211 (360)
+...| ||-.....+. .+..- .|..-||..|+.---. ..-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34567 8988754443 33333 5999999999853211 24469999764
No 178
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.15 E-value=83 Score=22.99 Aligned_cols=41 Identities=29% Similarity=0.626 Sum_probs=30.5
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
....|+.|-..+...+.+.. -+..||..|+ .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCC
Confidence 45689999999876666543 4678999883 58888887754
No 179
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=21.91 E-value=13 Score=25.59 Aligned_cols=41 Identities=22% Similarity=0.529 Sum_probs=25.6
Q ss_pred ccCCccccCcceeecCCCCCCCChhhHHHHHh---cCCCCCcccC
Q 018110 169 VCLSEFQEDETLRLLPKCNHAFHISCIDTWLR---SHTNCPLCRS 210 (360)
Q Consensus 169 ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~ 210 (360)
||..... +......-.|..-||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6776654 333444445999999999853221 2345888864
No 180
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.50 E-value=72 Score=22.42 Aligned_cols=40 Identities=20% Similarity=0.498 Sum_probs=28.4
Q ss_pred CCcccccCCcccc--CcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 164 GTECSVCLSEFQE--DETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 164 ~~~C~ICl~~~~~--~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
...|+-|-+.+.. .+.+.. . -+..||.+|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-F-EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE-E-CCcccCcccC--------EeccCCCcCC
Confidence 4679999998875 333322 2 5788998884 6888988775
No 181
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.40 E-value=20 Score=28.81 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=16.4
Q ss_pred CCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 185 KCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 185 ~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
+||+.|. .=+.....||.|+..-..
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 4999992 112344679999987654
No 182
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.24 E-value=77 Score=22.50 Aligned_cols=42 Identities=19% Similarity=0.482 Sum_probs=30.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCccc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 214 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 214 (360)
....|+-|-+.+...+.+... -+..||..|+ .|-.|+.+|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 457899999998765544322 4678998874 58888888764
No 183
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.58 E-value=34 Score=24.58 Aligned_cols=37 Identities=22% Similarity=0.577 Sum_probs=19.5
Q ss_pred cccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 166 ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 166 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
.|+.|-+.+..++.+.. -+..||..|+ .|-.|+.+|.
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPCL--------KCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTTC--------BCTTTCCBCC
T ss_pred cCCCCCCEEECceEEEE---CCccccCCCC--------CccccCccCC
Confidence 36666666654444332 2456666552 3556655554
No 184
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.55 E-value=78 Score=23.11 Aligned_cols=40 Identities=23% Similarity=0.655 Sum_probs=30.0
Q ss_pred CCCcccccCCccccCcceeecCCCCCCCChhhHHHHHhcCCCCCcccCCcc
Q 018110 163 EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 213 (360)
Q Consensus 163 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 213 (360)
....|+-|-+.+..++.+.. -+..||.+|+ .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 35679999999877766654 4678998873 5888888774
Done!