Your job contains 1 sequence.
>018111
MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW
PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF
KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNG
WKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV
PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR
MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKNLDE
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018111
(360 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006392 - symbol:AT3G48425 species:3702 "Ara... 1334 3.2e-136 1
GENEDB_PFALCIPARUM|PFC0250c - symbol:PFC0250c "AP endonuc... 376 1.3e-50 2
UNIPROTKB|O97240 - symbol:PFC0250c "AP endonuclease (DNA-... 376 1.3e-50 2
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 268 5.8e-27 2
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 267 7.4e-27 2
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 265 1.2e-26 2
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 265 1.2e-26 2
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 265 1.2e-26 2
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 265 1.2e-26 2
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 266 1.5e-26 2
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 264 1.5e-26 2
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 264 1.5e-26 2
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 257 1.0e-25 2
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 255 1.3e-25 2
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 243 1.3e-25 2
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 237 5.6e-25 2
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 242 3.0e-24 2
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 191 2.0e-19 3
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 222 2.1e-17 2
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 196 1.4e-16 2
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 186 1.4e-15 2
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 157 4.2e-10 2
UNIPROTKB|H7C4A8 - symbol:APEX1 "DNA-(apurinic or apyrimi... 116 8.6e-10 2
UNIPROTKB|G3V5Q1 - symbol:APEX1 "DNA-(apurinic or apyrimi... 137 1.0e-08 2
UNIPROTKB|Q9KQY7 - symbol:VC1860 "Exodeoxyribonuclease II... 132 2.8e-08 2
TIGR_CMR|VC_1860 - symbol:VC_1860 "exodeoxyribonuclease I... 132 2.8e-08 2
ASPGD|ASPL0000077623 - symbol:AN4736 species:162425 "Emer... 153 5.1e-08 2
UNIPROTKB|G3V359 - symbol:APEX1 "DNA-(apurinic or apyrimi... 130 5.3e-08 1
UNIPROTKB|G3V5M0 - symbol:APEX1 "DNA-(apurinic or apyrimi... 125 1.9e-07 1
UNIPROTKB|F1M911 - symbol:F1M911 "Uncharacterized protein... 134 1.4e-06 2
UNIPROTKB|F1M909 - symbol:F1M909 "Uncharacterized protein... 134 1.8e-06 2
UNIPROTKB|F1M910 - symbol:F1M910 "Uncharacterized protein... 134 1.8e-06 2
UNIPROTKB|G3V3C7 - symbol:APEX1 "DNA-(apurinic or apyrimi... 121 4.7e-06 1
UNIPROTKB|P09030 - symbol:xthA "exonuclease III" species:... 111 7.6e-06 2
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 134 8.6e-06 1
TIGR_CMR|CBU_0297 - symbol:CBU_0297 "exodeoxyribonuclease... 126 1.3e-05 1
TIGR_CMR|GSU_1539 - symbol:GSU_1539 "exodeoxyribonuclease... 104 2.7e-05 2
TIGR_CMR|ECH_0675 - symbol:ECH_0675 "exodeoxyribonuclease... 102 0.00010 2
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 117 0.00015 2
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 100 0.00017 2
UNIPROTKB|F1PFY2 - symbol:APEX1 "Uncharacterized protein"... 108 0.00018 2
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 120 0.00029 2
TIGR_CMR|SO_3037 - symbol:SO_3037 "exodeoxyribonuclease I... 98 0.00042 2
TIGR_CMR|APH_0505 - symbol:APH_0505 "exodeoxyribonuclease... 96 0.00058 2
>TAIR|locus:505006392 [details] [associations]
symbol:AT3G48425 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0009507 EMBL:CP002686 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:BT015809
EMBL:BT020215 IPI:IPI00532252 RefSeq:NP_566904.2 UniGene:At.50257
ProteinModelPortal:Q5XF07 SMR:Q5XF07 STRING:Q5XF07 PaxDb:Q5XF07
PRIDE:Q5XF07 EnsemblPlants:AT3G48425.1 GeneID:824001
KEGG:ath:AT3G48425 OMA:KWDKRML ProtClustDB:CLSN2680895
Genevestigator:Q5XF07 Uniprot:Q5XF07
Length = 364
Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
Identities = 250/346 (72%), Positives = 281/346 (81%)
Query: 1 MKRFFKPIEKECXXXXXXXXXX-XXXXXXXXXXXXXXXXXDPLKFVTWNANSLLLRVKNN 59
MKRFFKPIEKE +P KF+TWNANS LLRVKN+
Sbjct: 1 MKRFFKPIEKENSPAAKKPCLSPEKRDGDGDGVEEEKNQNEPSKFMTWNANSFLLRVKND 60
Query: 60 WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119
W +FS F++ FDPDVIA+QEVRMPAAG K PKNH+EL DDTK REEK IL RALSSPP
Sbjct: 61 WSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSPP 120
Query: 120 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEFETFYLLN 173
F NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K DGRVILAEFETF LLN
Sbjct: 121 FGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLLN 180
Query: 174 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAA 233
TY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 181 TYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFAT 240
Query: 234 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 293
AKLNGYVPPNKED GQPGFT +ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNPI
Sbjct: 241 AKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNPI 300
Query: 294 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 339
GKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGF+GSDHCPV
Sbjct: 301 GKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFHGSDHCPV 346
>GENEDB_PFALCIPARUM|PFC0250c [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-(apurinic
or apyrimidinic site) lyase), putative" species:5833 "Plasmodium
falciparum" [GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase
activity" evidence=ISS] [GO:0020011 "apicoplast" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL844502
GO:GO:0020011 HSSP:P27695 RefSeq:XP_001351132.1
ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 376 (137.4 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
Identities = 91/201 (45%), Positives = 121/201 (60%)
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG---KPLIWCG 214
+GRVIL EF F+LL+TY PNNG+ + F+RRR +D+++Q+FV KPL+W G
Sbjct: 416 EGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRRLFDEQLQKFVTILRNEKQKPLVWTG 473
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL G L+D+YR
Sbjct: 474 DLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFIGQPGCTDFERKNFQKILTAGNLVDSYR 530
Query: 275 FLH-------KEKDM-------DCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDRIIA 318
+L K+ ++ D ++W P +GK K MRID+FIVS+E +RI
Sbjct: 531 YLQNIKLNEDKKNNIKHTPNINDNIYTWRC-PFLLGKSCNKAMRIDHFIVSKEFLNRINK 589
Query: 319 CEMQGHGIELEGFYGSDHCPV 339
+QG + FYGSDHCPV
Sbjct: 590 IHIQGFSVFHNNFYGSDHCPV 610
Score = 177 (67.4 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
Identities = 43/124 (34%), Positives = 69/124 (55%)
Query: 45 VTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQE 96
VTWN NS+ +R KN W EF NF + DV+ QEVR+PA +K+ KN +
Sbjct: 281 VTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEVRLPAMNLSEPCDNKNKNKNKND 340
Query: 97 -LKDDTKASR-EEKLI----LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV 150
++D K ++K + +M + + FK+Y ++SLA+ KY+G +LVKK + +
Sbjct: 341 GIRDRGKIKNSDQKSLADYEIMEQILNDDFKDYNAYFSLANIKYSGQLVLVKKNIHIESI 400
Query: 151 SFSL 154
++L
Sbjct: 401 RYNL 404
>UNIPROTKB|O97240 [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-[apurinic or
apyrimidinic site] lyase), putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL844502 GO:GO:0020011 HSSP:P27695
RefSeq:XP_001351132.1 ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 376 (137.4 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
Identities = 91/201 (45%), Positives = 121/201 (60%)
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG---KPLIWCG 214
+GRVIL EF F+LL+TY PNNG+ + F+RRR +D+++Q+FV KPL+W G
Sbjct: 416 EGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRRLFDEQLQKFVTILRNEKQKPLVWTG 473
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL G L+D+YR
Sbjct: 474 DLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFIGQPGCTDFERKNFQKILTAGNLVDSYR 530
Query: 275 FLH-------KEKDM-------DCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDRIIA 318
+L K+ ++ D ++W P +GK K MRID+FIVS+E +RI
Sbjct: 531 YLQNIKLNEDKKNNIKHTPNINDNIYTWRC-PFLLGKSCNKAMRIDHFIVSKEFLNRINK 589
Query: 319 CEMQGHGIELEGFYGSDHCPV 339
+QG + FYGSDHCPV
Sbjct: 590 IHIQGFSVFHNNFYGSDHCPV 610
Score = 177 (67.4 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
Identities = 43/124 (34%), Positives = 69/124 (55%)
Query: 45 VTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQE 96
VTWN NS+ +R KN W EF NF + DV+ QEVR+PA +K+ KN +
Sbjct: 281 VTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEVRLPAMNLSEPCDNKNKNKNKND 340
Query: 97 -LKDDTKASR-EEKLI----LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV 150
++D K ++K + +M + + FK+Y ++SLA+ KY+G +LVKK + +
Sbjct: 341 GIRDRGKIKNSDQKSLADYEIMEQILNDDFKDYNAYFSLANIKYSGQLVLVKKNIHIESI 400
Query: 151 SFSL 154
++L
Sbjct: 401 RYNL 404
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 268 (99.4 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 79/219 (36%), Positives = 119/219 (54%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P +Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 95 ETKCS-ENKL--PAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEE 149
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 150 HDQEGRVIVAEFESFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLC 207
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 208 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADSF 252
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S L
Sbjct: 253 RHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 290
Score = 101 (40.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 230 GFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSH 288
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + +++ + GSDHCP+
Sbjct: 289 SLLPALCDSKIRSKAL------GSDHCPI 311
Score = 50 (22.7 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 61 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 110
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 267 (99.0 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 79/219 (36%), Positives = 119/219 (54%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P +Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 95 ETKCS-ENKL--PAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEE 149
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 150 HDQEGRVIVAEFESFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLC 207
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 208 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGEMLQAVPLADSF 252
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S L
Sbjct: 253 RHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 290
Score = 50 (22.7 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 61 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 110
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 265 (98.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 78/219 (35%), Positives = 120/219 (54%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDEE 150
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLC 208
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADSF 253
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S L
Sbjct: 254 RHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
Score = 102 (41.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 231 GFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSH 289
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + +++ + GSDHCP+
Sbjct: 290 SLLPALCDSKIRSKAL------GSDHCPI 312
Score = 50 (22.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 111
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 265 (98.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 78/219 (35%), Positives = 120/219 (54%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEE 150
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLC 208
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADSF 253
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S L
Sbjct: 254 RHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
Score = 102 (41.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 231 GFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSH 289
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + +++ + GSDHCP+
Sbjct: 290 SLLPALCDSKIRSKAL------GSDHCPI 312
Score = 50 (22.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 111
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 265 (98.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 78/219 (35%), Positives = 120/219 (54%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEE 150
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLC 208
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADSF 253
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S L
Sbjct: 254 RHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
Score = 102 (41.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 231 GFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSH 289
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + +++ + GSDHCP+
Sbjct: 290 SLLPALCDSKIRSKAL------GSDHCPI 312
Score = 50 (22.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 111
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 265 (98.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 79/219 (36%), Positives = 119/219 (54%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P +Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 96 ETKCS-ENKL--PAELQELPGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEE 150
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEF+TF L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEFDTFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLC 208
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADSF 253
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S L
Sbjct: 254 RHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
Score = 101 (40.6 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 231 GFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSH 289
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + +++ + GSDHCP+
Sbjct: 290 SLLPALCDSKIRSKAL------GSDHCPI 312
Score = 50 (22.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 111
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 266 (98.7 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 79/219 (36%), Positives = 118/219 (53%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P +Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 95 ETKCS-ENKL--PAELQDLPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEE 149
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEF++F L+ Y PN G + R++WDK +F+ S KPL+ C
Sbjct: 150 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDKAFCKFLKDLASRKPLVLC 207
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 208 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLTDSF 252
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S L
Sbjct: 253 RHLYPNTPYAYTF-WTYMMNARAKNVGWRLDYFLLSHSL 290
Score = 103 (41.3 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 230 GFTPQERQGFGELLQAVPLTDSFRHLYPNTPYAYTF-WTYMMNARAKNVGWRLDYFLLSH 288
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + +++ + GSDHCP+
Sbjct: 289 SLLSSLCDSKIRSKAL------GSDHCPI 311
Score = 48 (22.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
LK +WN + L +K ++ + PD++ LQE +
Sbjct: 61 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK 97
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 264 (98.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 80/220 (36%), Positives = 118/220 (53%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSL--E 155
+TK S E KL L P +YQ +WS K Y+G LL ++C P KVS+ + E
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSYQ-YWSAPXXKEGYSGVGLLSRQC--PLKVSYGIGEE 149
Query: 156 KTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 212
+ D GRVI+AEF++F L+ Y PN G + R++WD+ + F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVL 207
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
+R L+ F W+ + + R+DYF++S L
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
Score = 102 (41.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 231 GFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSH 289
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + +++ + GSDHCP+
Sbjct: 290 SLLPALCDSKIRSKAL------GSDHCPI 312
Score = 50 (22.7 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 111
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 264 (98.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 78/219 (35%), Positives = 119/219 (54%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEE 150
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEF++F L+ Y PN G + R++WD+ + F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLC 208
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADSF 253
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S L
Sbjct: 254 RHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
Score = 102 (41.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 231 GFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSH 289
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + +++ + GSDHCP+
Sbjct: 290 SLLTALCDSKIRSKAL------GSDHCPI 312
Score = 50 (22.7 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 111
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 257 (95.5 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 73/219 (33%), Positives = 121/219 (55%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S + + ++ LS ++Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 96 ETKCSENKLPVELQELSG---LSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEE 150
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLC 208
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLTDSF 253
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S+ +
Sbjct: 254 RHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSV 291
Score = 49 (22.3 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPVELQEL 111
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 255 (94.8 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 75/219 (34%), Positives = 118/219 (53%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S + ++ LS P +Q W + +D + Y+G LL ++C KVS+ + E+
Sbjct: 96 ETKCSENKLPAELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQCL---KVSYGIGEEE 149
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 150 HDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLC 207
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 208 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADSF 252
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
R L+ F W+ + + R+DYF++S L
Sbjct: 253 RHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 290
Score = 101 (40.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 230 GFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSH 288
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + +++ + GSDHCP+
Sbjct: 289 SLLPALCDSKIRSKAL------GSDHCPI 311
Score = 50 (22.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 111
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 243 (90.6 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 65/188 (34%), Positives = 100/188 (53%)
Query: 121 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTY 175
K Y+ + AD K + GT +L KK +P ++F + +GRVI E++ FY++NTY
Sbjct: 154 KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTY 211
Query: 176 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 234
PN G + + R ++WD Q ++ + + KP+IWCGDLNV+H EID+ +P+
Sbjct: 212 IPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPK----- 266
Query: 235 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGNPI 293
NK+ GFTI ER F L++G +D+YR + K+ F S+ G
Sbjct: 267 -------TNKKS---AGFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTFWSYLGGGR 315
Query: 294 GKYRGKRM 301
K G R+
Sbjct: 316 SKNVGWRL 323
Score = 124 (48.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFTI ER F L++G +D+YR + K+ F WS G+ + R+DYF+VS+
Sbjct: 273 GFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSK 330
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L D I + GSDHCP+
Sbjct: 331 RLMDSIKISPFHRTSV-----MGSDHCPI 354
Score = 62 (26.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDA-PKNHQ 95
+K ++WN + F+ ++ +PDV+ LQE ++ P+ KD PK ++
Sbjct: 105 MKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYE 157
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 237 (88.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 121 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EKTD--GRVILAEFETFYLLNTY 175
+ Y +W+ A K Y+GTA+ KK +P V++ L E+ D GRVI EFE FY++ Y
Sbjct: 49 EGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLY 106
Query: 176 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAA 234
PN+ K + R KW+ + ++ + K +++CGDLNV+H+EID+ +P+
Sbjct: 107 TPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFCGDLNVAHKEIDLKNPK----- 159
Query: 235 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD 281
N+++ PGF+ ER++F IL+EG ID YR+L+ +++
Sbjct: 160 -------SNRKN---PGFSDEEREKFTCILEEG-FIDTYRYLYPDQE 195
Score = 165 (63.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 40/98 (40%), Positives = 58/98 (59%)
Query: 244 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-- 301
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLYP--DQEGAYSWWSYRMGA-RAKNIGW 214
Query: 302 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 339
R+DYF+VSE +KD+I A ++ + GSDHCPV
Sbjct: 215 RLDYFVVSERMKDQITAAKINSEVM------GSDHCPV 246
Score = 62 (26.9 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
+KF++WN N L + F ++ + D+ LQE+++
Sbjct: 1 MKFISWNVNGLRAVIAKGG--FLEYLEESNADIFCLQEIKL 39
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 242 (90.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 70/184 (38%), Positives = 106/184 (57%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDEE 150
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 213
D GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLC 208
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADSF 253
Query: 274 RFLH 277
R L+
Sbjct: 254 RHLY 257
Score = 50 (22.7 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 111
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 191 (72.3 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 43/112 (38%), Positives = 64/112 (57%)
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSL--EKTD--GRVILAEFETFYLLNTYAPN 178
Y +W YAG A+ K P V + + E+ D GR+I AE+E FYL+N Y PN
Sbjct: 479 YHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNEEFDDVGRMITAEYEKFYLINVYVPN 536
Query: 179 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPE 229
+G K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P+
Sbjct: 537 SGRKLV--NLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPK 586
Score = 99 (39.9 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 244 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 303
K + GFT ER + +L G +D +R L+ ++ F W+ + R R+
Sbjct: 586 KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANARARNVGWRL 643
Query: 304 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 339
DY +VSE +++ E++ + GSDHCP+
Sbjct: 644 DYCLVSERFVPKVVEHEIRSQCL------GSDHCPI 673
Score = 46 (21.3 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
LK +WN L +K + + I +PD+ LQE +
Sbjct: 427 LKICSWNVAGLRAWLKKDGLQL---IDLEEPDIFCLQETK 463
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 222 (83.2 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 58/159 (36%), Positives = 89/159 (55%)
Query: 126 WWSLADSK--YAGTALLVKKCFQPKKVSF----SLEKTDGRVILAEFETFYLLNTYAPNN 179
+WS + SK Y+GTA++ + +P V + S T+GR++ AEF++FYL+NTY PN+
Sbjct: 336 FWSCSVSKLGYSGTAIISR--IKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNS 393
Query: 180 GWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 238
G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P G
Sbjct: 394 GDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPA--------G 444
Query: 239 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
NK GFTI ER+ FGA L + +D +R H
Sbjct: 445 ----NKRS---AGFTIEERQSFGANLLDKGFVDTFRKQH 476
Score = 118 (46.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 33/90 (36%), Positives = 46/90 (51%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVS 309
GFTI ER+ FGA L + +D +R K+ G++ W G+ K R+DYF+VS
Sbjct: 450 GFTIEERQSFGANLLDKGFVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVS 506
Query: 310 EELKDRIIACEMQGHGIELEGFYGSDHCPV 339
+ IA + I L GSDHCP+
Sbjct: 507 QS-----IAANVHDSYI-LPDINGSDHCPI 530
Score = 45 (20.9 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS--NFITTFDPDVIALQEVRMPAAGSKDAPK 92
+K +TWN N L +K + FS + D++ LQE ++ ++ K
Sbjct: 276 VKVMTWNVNGLRGLLK--FESFSALQLAQRENFDILCLQETKLQVKDVEEIKK 326
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 196 (74.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 66/190 (34%), Positives = 95/190 (50%)
Query: 120 FKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLEK----TDGRVILAEFETFYLL 172
FKNY ++ K YAG LL KC P KV + T GR+I+AEF FY +
Sbjct: 82 FKNYTKTLVVSTEKNGGYAGVGLL-SKC-APMKVHKGIGDPEFDTAGRLIIAEFSKFYFI 139
Query: 173 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 231
Y PN+G K + ++R +W+K + E + + K P+I+ GDLNV+H EID+ +PE
Sbjct: 140 GAYVPNSGAKLV--NLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVAHNEIDLKNPES- 196
Query: 232 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 291
N NK GFT ER F +L+ G D +R +H ++ +S+ N
Sbjct: 197 -----NR----NKT----AGFTDQERGWFSEMLELG-FTDTFRAMHPDEKKYSFWSYLAN 242
Query: 292 PIGKYRGKRM 301
K G R+
Sbjct: 243 SRQKDVGWRL 252
Score = 52 (23.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE-LKDDT 101
KFV WN L VK + +F + +PD++ L E + K+ P +E K+ T
Sbjct: 35 KFVCWNVAGLRACVKKS--DFKEVLAE-EPDLVFLGETKC-----KEWPPEMEETFKNYT 86
Query: 102 K 102
K
Sbjct: 87 K 87
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 186 (70.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 53/170 (31%), Positives = 86/170 (50%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD 158
+TK + EK + P + ++ W D + Y+G A+L K +P V++ + K +
Sbjct: 89 ETKCA--EKALPADITGMPEYP-HKYWAGSEDKEGYSGVAMLCKT--EPLNVTYGIGKEE 143
Query: 159 ----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 213
GRVI AEF F+L+ Y PN + R+ WD + ++ KPL+ C
Sbjct: 144 HDKEGRVITAEFPDFFLVTAYVPNASRGLVRLDY--RKTWDVDFRAYLCGLDARKPLVLC 201
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAERKRF 260
GDLNV+H+EID+ +P+ K G+ P +E + Q GFT + R+ +
Sbjct: 202 GDLNVAHQEIDLKNPK--GNRKNAGFTPEEREGFTQLLEAGFTDSFRELY 249
Score = 92 (37.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ F +L+ G D++R L+ ++ F W+ + + R+DYF++S
Sbjct: 224 GFTPEEREGFTQLLEAG-FTDSFRELYPDQAYAYTF-WTYMMNARSKNVGWRLDYFVLSS 281
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPV 339
L + C+ + + GSDHCP+
Sbjct: 282 ALLPGL--CDSKIRNTAM----GSDHCPI 304
Score = 62 (26.9 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
+K +WN + L VK N ++ + DPD++ LQE +
Sbjct: 55 MKITSWNVDGLRAWVKKNGLDW---VRKEDPDILCLQETK 91
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 157 (60.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 53/168 (31%), Positives = 86/168 (51%)
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGRVILAEFETFYLLNTYAPN 178
PFK + + S + Y+G L + KK F + +GRV+ F+ L N Y PN
Sbjct: 58 PFK-HMYFNSAKRAGYSGVMSLCNFNSEVKKCEF-FDDEEGRVLEHRFKNIALFNIYFPN 115
Query: 179 NGWKEEEN-SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 237
G K+EE +F+ + D + L G +I CGD+N +H+EID++HP+ A A +
Sbjct: 116 -GQKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPK--ANANTS 172
Query: 238 GYVPPNK---EDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 282
G++P + +D + GF R+ G I KE +YR +E+++
Sbjct: 173 GFLPIERAWIDDLLKLGFIDTFREINGEI-KEKYSWWSYRMKARERNV 219
Score = 40 (19.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
+K ++WN N L N ++I D I QE++
Sbjct: 8 MKLLSWNVNGLRAICDKN---ALDWIAQEQIDFIGFQEIK 44
>UNIPROTKB|H7C4A8 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:H7C4A8 PRIDE:H7C4A8
Ensembl:ENST00000438886 Uniprot:H7C4A8
Length = 150
Score = 116 (45.9 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHP 228
Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P
Sbjct: 98 YVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNP 150
Score = 50 (22.7 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 12 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 61
>UNIPROTKB|G3V5Q1 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634
GO:GO:0005813 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V5Q1 SMR:G3V5Q1 Ensembl:ENST00000555839
ArrayExpress:G3V5Q1 Bgee:G3V5Q1 Uniprot:G3V5Q1
Length = 242
Score = 137 (53.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 191 RRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 249
R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+ G NK++
Sbjct: 156 RQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK--------G----NKKN--- 200
Query: 250 PGFTIAERKRFGAILKEGRLIDAYRFLH 277
GFT ER+ FG +L+ L D++R L+
Sbjct: 201 AGFTPQERQGFGELLQAVPLADSFRHLY 228
Score = 50 (22.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
LK +WN + L +K ++ + PD++ LQE + P QEL
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK---CSENKLPAELQEL 111
>UNIPROTKB|Q9KQY7 [details] [associations]
symbol:VC1860 "Exodeoxyribonuclease III" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008853 "exodeoxyribonuclease III
activity" evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 132 (51.5 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 61/233 (26%), Positives = 103/233 (44%)
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKV--SFSL--EKTDGRVILAEF-----ETFYLLN 173
YQ+++ + Y G A+L K+ P +V F E+ R+I+A F + +LN
Sbjct: 52 YQVYFHGQKAHY-GVAILCKQT--PVEVIKGFPTDNEEHQKRMIMATFADQNGQKTTILN 108
Query: 174 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHPEFF 231
Y P E E F +R++ + + ++ + + + L+ GD+N+S ++D+
Sbjct: 109 GYFPQGDNVEHETKFPYKRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDI------ 162
Query: 232 AAAKLNGYVPPNKEDWGQPG---FTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 288
G N++ W Q G F ER+ +L G L+D +R LH D+ FSW
Sbjct: 163 ------GIGEANRKRWLQTGKCSFQPEEREWLQTLLDWG-LVDTFRQLHP--DVSDQFSW 213
Query: 289 SGNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIELEGF-YGSDHCPV 339
+ R +RID + + L + C+ G EL SDH P+
Sbjct: 214 FDYRSRGFEDNRGLRIDVILATPTLAE---TCQEAGIDYELRAIDKPSDHAPI 263
Score = 55 (24.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
+K +++N N L R+ + I PDVI LQE+++
Sbjct: 1 MKVISFNINGLRARLH----QLQALIDKHQPDVIGLQEIKV 37
>TIGR_CMR|VC_1860 [details] [associations]
symbol:VC_1860 "exodeoxyribonuclease III" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 132 (51.5 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 61/233 (26%), Positives = 103/233 (44%)
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKV--SFSL--EKTDGRVILAEF-----ETFYLLN 173
YQ+++ + Y G A+L K+ P +V F E+ R+I+A F + +LN
Sbjct: 52 YQVYFHGQKAHY-GVAILCKQT--PVEVIKGFPTDNEEHQKRMIMATFADQNGQKTTILN 108
Query: 174 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHPEFF 231
Y P E E F +R++ + + ++ + + + L+ GD+N+S ++D+
Sbjct: 109 GYFPQGDNVEHETKFPYKRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDI------ 162
Query: 232 AAAKLNGYVPPNKEDWGQPG---FTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 288
G N++ W Q G F ER+ +L G L+D +R LH D+ FSW
Sbjct: 163 ------GIGEANRKRWLQTGKCSFQPEEREWLQTLLDWG-LVDTFRQLHP--DVSDQFSW 213
Query: 289 SGNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIELEGF-YGSDHCPV 339
+ R +RID + + L + C+ G EL SDH P+
Sbjct: 214 FDYRSRGFEDNRGLRIDVILATPTLAE---TCQEAGIDYELRAIDKPSDHAPI 263
Score = 55 (24.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
+K +++N N L R+ + I PDVI LQE+++
Sbjct: 1 MKVISFNINGLRARLH----QLQALIDKHQPDVIGLQEIKV 37
>ASPGD|ASPL0000077623 [details] [associations]
symbol:AN4736 species:162425 "Emericella nidulans"
[GO:0034614 "cellular response to reactive oxygen species"
evidence=IEA] [GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 EMBL:BN001303 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 OMA:FIDSYRC
EnsemblFungi:CADANIAT00005693 HOGENOM:HOG000193944 Uniprot:C8VAT9
Length = 612
Score = 153 (58.9 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 64/208 (30%), Positives = 88/208 (42%)
Query: 146 QPKKVSFSLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRR--RKWDKRIQEF 201
Q K+ E D GR ++ EF F L+ Y P N E ++F++ D R++
Sbjct: 123 QLSKLKLDAETLDSEGRCVILEFPAFVLIGLYCPANR-DESRDAFRQNFLDLMDARVRNL 181
Query: 202 VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF- 260
V GK + GD+N+S EID +H AA + V + P + +
Sbjct: 182 V--ALGKRVFVTGDINISRGEIDAAH----AAENIKKGVTTEDDFVSAPARRLFNQLLID 235
Query: 261 GAIL---KEGR----LIDAYRFLH-KEKDM-DCGFSWSGNPIGKYRGKRMRIDYFIVSEE 311
G ++ EGR L D R H K K M C G Y G R IDY + S +
Sbjct: 236 GKVVGDRDEGREQPVLFDICRSFHPKRKGMYTCWEQRINARPGNY-GSR--IDYVLCSLD 292
Query: 312 LKDRIIACEMQGHGIELEGFYGSDHCPV 339
+KD +Q EG GSDHCPV
Sbjct: 293 MKDWFFDSNIQ------EGLMGSDHCPV 314
Score = 42 (19.8 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 43 KFVTWNA-NSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKD 89
+ TWN N + F + + D++ +QE ++ +D
Sbjct: 4 RITTWNGLNPFSYEPWRSTRTFESMFDILEADIVVVQETKIQRKDLRD 51
>UNIPROTKB|G3V359 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V359 SMR:G3V359
Ensembl:ENST00000557592 ArrayExpress:G3V359 Bgee:G3V359
Uniprot:G3V359
Length = 172
Score = 130 (50.8 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 38/101 (37%), Positives = 57/101 (56%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 79 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDEE 133
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 195
D GRVI+AEF++F L+ Y PN G + R++WD
Sbjct: 134 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWD 172
>UNIPROTKB|G3V5M0 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V5M0 SMR:G3V5M0
Ensembl:ENST00000557150 ArrayExpress:G3V5M0 Bgee:G3V5M0
Uniprot:G3V5M0
Length = 162
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 35/86 (40%), Positives = 51/86 (59%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 79 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDEE 133
Query: 157 TD--GRVILAEFETFYLLNTYAPNNG 180
D GRVI+AEF++F L+ Y PN G
Sbjct: 134 HDQEGRVIVAEFDSFVLVTAYVPNAG 159
>UNIPROTKB|F1M911 [details] [associations]
symbol:F1M911 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00777317 Ensembl:ENSRNOT00000055391 Uniprot:F1M911
Length = 278
Score = 134 (52.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEK 156
+TK S+ + L+ L P Q W + +D++ Y+G LL ++F E
Sbjct: 70 ETKCSKNK---LLAELQELPGLTRQYWSAPSDTEAYSGVGLLSTSAHSKSLLAFIGEAEH 126
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDL 216
I+AE + + TY PN G +Q+ WD+ +F+ KPL+ CG+L
Sbjct: 127 DQEDRIVAELASCVI--TYVPNAGRSLVRLEYQQC--WDEAFCKFLK----KPLVLCGNL 178
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEI + +P+ G NK++ FT ER+ FG +L+ L D R L
Sbjct: 179 NVTHEEIYLCNPK--------G----NKKN---ADFTPQERQGFGELLQAVPLADNLRHL 223
Query: 277 H 277
+
Sbjct: 224 Y 224
Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 334 SDHCPV 339
SDHCP+
Sbjct: 267 SDHCPI 272
>UNIPROTKB|F1M909 [details] [associations]
symbol:F1M909 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00779020 Ensembl:ENSRNOT00000055393 Uniprot:F1M909
Length = 292
Score = 134 (52.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEK 156
+TK S+ + L+ L P Q W + +D++ Y+G LL ++F E
Sbjct: 87 ETKCSKNK---LLAELQELPGLTRQYWSAPSDTEAYSGVGLLSTSAHSKSLLAFIGEAEH 143
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDL 216
I+AE + + TY PN G +Q+ WD+ +F+ KPL+ CG+L
Sbjct: 144 DQEDRIVAELASCVI--TYVPNAGRSLVRLEYQQC--WDEAFCKFLK----KPLVLCGNL 195
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEI + +P+ G NK++ FT ER+ FG +L+ L D R L
Sbjct: 196 NVTHEEIYLCNPK--------G----NKKN---ADFTPQERQGFGELLQAVPLADNLRHL 240
Query: 277 H 277
+
Sbjct: 241 Y 241
Score = 37 (18.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 334 SDHCPV 339
SDHCP+
Sbjct: 281 SDHCPI 286
>UNIPROTKB|F1M910 [details] [associations]
symbol:F1M910 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00781547 Ensembl:ENSRNOT00000055392 Uniprot:F1M910
Length = 294
Score = 134 (52.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEK 156
+TK S+ + L+ L P Q W + +D++ Y+G LL ++F E
Sbjct: 89 ETKCSKNK---LLAELQELPGLTRQYWSAPSDTEAYSGVGLLSTSAHSKSLLAFIGEAEH 145
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDL 216
I+AE + + TY PN G +Q+ WD+ +F+ KPL+ CG+L
Sbjct: 146 DQEDRIVAELASCVI--TYVPNAGRSLVRLEYQQC--WDEAFCKFLK----KPLVLCGNL 197
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEI + +P+ G NK++ FT ER+ FG +L+ L D R L
Sbjct: 198 NVTHEEIYLCNPK--------G----NKKN---ADFTPQERQGFGELLQAVPLADNLRHL 242
Query: 277 H 277
+
Sbjct: 243 Y 243
Score = 37 (18.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 334 SDHCPV 339
SDHCP+
Sbjct: 283 SDHCPI 288
>UNIPROTKB|G3V3C7 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0045454 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V3C7 SMR:G3V3C7
Ensembl:ENST00000556054 ArrayExpress:G3V3C7 Bgee:G3V3C7
Uniprot:G3V3C7
Length = 174
Score = 121 (47.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EK 156
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + E+
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDEE 150
Query: 157 TD--GRVILAEFETFYLLNTYAPN 178
D GRVI+AEF++F L+ Y PN
Sbjct: 151 HDQEGRVIVAEFDSFVLVTAYVPN 174
>UNIPROTKB|P09030 [details] [associations]
symbol:xthA "exonuclease III" species:83333 "Escherichia
coli K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IDA] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA;IDA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
EchoBASE:EB1066 Pfam:PF03372 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0005622
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 EMBL:X13002
EMBL:M22592 PIR:E64934 RefSeq:NP_416263.1 RefSeq:YP_490010.1
PDB:1AKO PDBsum:1AKO ProteinModelPortal:P09030 SMR:P09030
DIP:DIP-11148N IntAct:P09030 MINT:MINT-1243969 SWISS-2DPAGE:P09030
PaxDb:P09030 PRIDE:P09030 EnsemblBacteria:EBESCT00000001718
EnsemblBacteria:EBESCT00000016194 GeneID:12932910 GeneID:946254
KEGG:ecj:Y75_p1724 KEGG:eco:b1749 PATRIC:32118809 EcoGene:EG11073
HOGENOM:HOG000034587 OMA:EVNAKRW ProtClustDB:PRK11756
BioCyc:EcoCyc:EG11073-MONOMER BioCyc:ECOL316407:JW1738-MONOMER
BioCyc:MetaCyc:EG11073-MONOMER EvolutionaryTrace:P09030
Genevestigator:P09030 GO:GO:0008853 Uniprot:P09030
Length = 268
Score = 111 (44.1 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 55/231 (23%), Positives = 96/231 (41%)
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKVSF--SLEKTDGRVILAEFETFY----LLNTYA 176
Y +++ Y G ALL K+ + F E+ R+I+AE + ++N Y
Sbjct: 52 YNVFYHGQKGHY-GVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYF 110
Query: 177 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK---PLIWCGDLNVSHEEIDVSHPEFFAA 233
P ++ F + ++ + +Q + L+ K P++ GD+N+S ++D+
Sbjct: 111 PQGESRDHPIKFPAKAQFYQNLQNY-LETELKRDNPVLIMGDMNISPTDLDI-------- 161
Query: 234 AKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 290
G N++ W G+ F ER+ ++ G L+D +R H FSW
Sbjct: 162 ----GIGEENRKRWLRTGKCSFLPEEREWMDRLMSWG-LVDTFR--HANPQTADRFSWFD 214
Query: 291 NPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIELEGFYG-SDHCPV 339
+ R +RID + S+ L + C G E+ SDH PV
Sbjct: 215 YRSKGFDDNRGLRIDLLLASQPLAE---CCVETGIDYEIRSMEKPSDHAPV 262
Score = 56 (24.8 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
+KFV++N N L R + + PDVI LQE ++
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKV 37
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 134 (52.2 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 51/193 (26%), Positives = 78/193 (40%)
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR--RRKWDKRIQEFVLQCSGKPLIWCG 214
++GR ++ EF F L+ Y+P E F++ + D R++ V GK ++ G
Sbjct: 108 SEGRCMILEFPAFVLIGVYSPATR-DETRTDFRQAFHKAMDARVRNLVAM--GKQVVLTG 164
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL----KEGR-- 268
DLN+ E+D + +L E + P FG + EGR
Sbjct: 165 DLNIIRNELDTAG----ILERLRKEEMTIDEFFSTPSRRFLNHMVFGGTVVGGRDEGREE 220
Query: 269 --LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 326
+ D R H ++ + W + RIDY + S +KD I +Q
Sbjct: 221 PVMYDLGREFHPDR-IGMYTCWETRKNARPGNFGSRIDYVLCSAGMKDWFIDANIQ---- 275
Query: 327 ELEGFYGSDHCPV 339
EG GSDHCPV
Sbjct: 276 --EGLLGSDHCPV 286
>TIGR_CMR|CBU_0297 [details] [associations]
symbol:CBU_0297 "exodeoxyribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
HSSP:P27695 OMA:ADVFCIQ RefSeq:NP_819340.1
ProteinModelPortal:Q83EM1 PRIDE:Q83EM1 GeneID:1208179
KEGG:cbu:CBU_0297 PATRIC:17929289 ProtClustDB:CLSK913965
BioCyc:CBUR227377:GJ7S-304-MONOMER Uniprot:Q83EM1
Length = 259
Score = 126 (49.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 52/188 (27%), Positives = 90/188 (47%)
Query: 121 KNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSL--EKTD--GRVILAEFETFYLLNTY 175
K Y ++ A+ S Y+G + ++ +P +V+ L E D GR I A+F + + + Y
Sbjct: 51 KGYHCYYHDAEKSGYSGVGIYCRE--KPDRVTTRLGWEHADKEGRYIQADFGSLSVASLY 108
Query: 176 APNN--GWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAA 233
P+ G ++ F ++ KR++ V S + I CGD N+ H+EID+ + F +
Sbjct: 109 MPSGTTGEHRQKIKFDFMDRYMKRLKNIVH--SKRSFIICGDWNIVHKEIDIKN--FKSN 164
Query: 234 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 293
K +G +P + W FT K G L+DA+R ++++ D +S G
Sbjct: 165 QKYSGCLPEERA-WLDEVFT-----------KVG-LVDAFRVVNQKPDQYTWWSSRGRAW 211
Query: 294 GKYRGKRM 301
K G R+
Sbjct: 212 EKNVGWRI 219
>TIGR_CMR|GSU_1539 [details] [associations]
symbol:GSU_1539 "exodeoxyribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 RefSeq:NP_952590.1 HSSP:P09030
ProteinModelPortal:Q74CY2 SMR:Q74CY2 GeneID:2687378
KEGG:gsu:GSU1539 PATRIC:22025925
BioCyc:GSUL243231:GH27-1521-MONOMER Uniprot:Q74CY2
Length = 271
Score = 104 (41.7 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 44/177 (24%), Positives = 77/177 (43%)
Query: 171 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CS-GKPLIWCGDLNVSHEEIDVSHP 228
++N Y P ++ F + ++ + ++ C PL GD N++ + D+
Sbjct: 106 VINGYFPQGESRDHPVKFPAKERFYADVLAYLKSSCDPDAPLAVMGDFNIAPVDPDI--- 162
Query: 229 EFFAAAKLNGYVPPNKEDWGQPGFT--IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 286
G N + W + G T + E + + A L++ L D+YR L+ D+D F
Sbjct: 163 ---------GIGADNAKRWLRTGKTSFLPEERAWFAALRDWGLHDSYRELYP--DIDDRF 211
Query: 287 SWSGNPIGKYRG--KR-MRIDYFIVSEELKDRIIACEMQGHGIELEGFYG-SDHCPV 339
SW + KR +RID+ +++ L+ AC G ++ SDHCPV
Sbjct: 212 SWFDYRSRGFESEPKRGLRIDHILLTRPLQQ---ACRAAGIDYDIRAMEKPSDHCPV 265
Score = 59 (25.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAA 85
+K V++N N L R+ + + T PD+I LQE ++ A
Sbjct: 1 MKLVSFNVNGLRSRLH----QLEELVRTHRPDIIGLQETKVQDA 40
>TIGR_CMR|ECH_0675 [details] [associations]
symbol:ECH_0675 "exodeoxyribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
OMA:EKAFSWW RefSeq:YP_507482.1 ProteinModelPortal:Q2GGF1
STRING:Q2GGF1 GeneID:3927975 KEGG:ech:ECH_0675 PATRIC:20576802
ProtClustDB:CLSK749128 BioCyc:ECHA205920:GJNR-677-MONOMER
Uniprot:Q2GGF1
Length = 281
Score = 102 (41.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 248 GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR-MRIDYF 306
G+ F +ER++F +IL G D++R L+ D + FSW G ++ R +RID
Sbjct: 187 GKLCFHKSEREKFRSILNLG-FTDSFRVLN---DYEKKFSWWNYKAGAWQQNRGLRIDNL 242
Query: 307 IVSEELKDRIIACEMQGHGIELEGF-YGSDHCPV 339
++S + D++++C + H +L G SDH PV
Sbjct: 243 LLSPQATDKLLSCVI--HD-KLRGLDTPSDHAPV 273
Score = 56 (24.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
LK TWN NS+ R+ + N++ D+ LQE++
Sbjct: 3 LKIATWNVNSIRKRLDH----LCNWLINSAIDIALLQEIK 38
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 117 (46.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 50/172 (29%), Positives = 73/172 (42%)
Query: 171 LLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPE 229
++N Y P+ + K E +F+ R +I+ L +G +I GDLN +H ID H
Sbjct: 152 VINVYCPHADPGKPERLTFKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPID--H-- 207
Query: 230 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKD-MDCGFS 287
+ A L + W G R + G+ + G ID+YR+ K+K C
Sbjct: 208 -WDAVNLECFEEDPGRKW-MDGLLSNLRCQAGSHM--GPFIDSYRYFQPKQKGAFTC--- 260
Query: 288 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 339
WS ++ RIDY L DR + + L GSDHCPV
Sbjct: 261 WSTVTGARHLNYGSRIDYV-----LGDRALVMDTFQSSFVLPEVMGSDHCPV 307
Score = 46 (21.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 42 LKFVTWNANSLLLRVKN-NWPEFSN--------FITTFDPDVIALQEVRM 82
L+ V+WN N + ++ + E SN + D D++ LQE ++
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKV 51
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 100 (40.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 51/184 (27%), Positives = 76/184 (41%)
Query: 171 LLNTYAPN-NGWKEEENSFQRR--RKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 227
++N Y P + K E F+ + R R E +L SG +I GD+N SH ID
Sbjct: 137 VINVYCPRADPDKPERKEFKLQFYRLLQCRA-EAILS-SGSHVIILGDVNTSHRPIDHCD 194
Query: 228 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE-----------GRLIDAYRFL 276
P+ + N P ++ Q F AE G E G+ +D++R+
Sbjct: 195 PDDVDNFEDN----PGRKWLDQFLFETAENSENGNAADEPAEDFQESASGGKFVDSFRYF 250
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL-KDRIIACEMQGHGIELEGFYGSD 335
H ++ + WS + RIDY + L K I ++ E+EG SD
Sbjct: 251 HPKRS-NAFTCWSTLTGARQTNYGTRIDYIFSNHSLVKTFFIGVDIMP---EVEG---SD 303
Query: 336 HCPV 339
HCPV
Sbjct: 304 HCPV 307
Score = 65 (27.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
+K VTWN N + KN + +FD D+I +QE ++
Sbjct: 1 MKIVTWNINGIRT-FKNG---IKKILDSFDADIICVQETKV 37
>UNIPROTKB|F1PFY2 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0080111 "DNA demethylation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0045739 "positive
regulation of DNA repair" evidence=IEA] [GO:0045454 "cell redox
homeostasis" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR004808
PROSITE:PS51435 GO:GO:0005739 GO:GO:0005813 GO:GO:0048471
GO:GO:0005730 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0080111 GO:GO:0003713
GO:GO:0090305 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0031490 GO:GO:0008081
GO:GO:0016890 GO:GO:0043488 EMBL:AAEX03000382
Ensembl:ENSCAFT00000035985 Uniprot:F1PFY2
Length = 284
Score = 108 (43.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 56/188 (29%), Positives = 77/188 (40%)
Query: 84 AAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI---WWSLADSK--YAGTA 138
+A K N LK K REE LS+ P + ++ + S+ K Y G
Sbjct: 53 SASLKICSWNADGLKCRKKPQREETKCSENKLSAEPQELPELSHQYRSVRSDKEGYRGVG 112
Query: 139 LLVKKCFQPKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 198
LL C P KVS+ G + F L Y PN G + WD
Sbjct: 113 LLSHPC--PLKVSYGTGDK-GHDLEGRVTEFVLETAYVPNTGGSL---GCLVAQCWDGAF 166
Query: 199 QEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 257
+F+ S L CGDL+V+HEEI + +P+ G NK+ GFT ER
Sbjct: 167 CKFLKGLASHTSLGLCGDLSVAHEEIHLLYPK--------G----NKQ---HAGFTRQER 211
Query: 258 KRFGAILK 265
+ FG +L+
Sbjct: 212 QGFGELLR 219
Score = 47 (21.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
+DYF++S L + C+ + L GSDHCP
Sbjct: 256 LDYFLLSHSL---LPLCDSKSCCRAL----GSDHCP 284
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 120 (47.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 49/182 (26%), Positives = 78/182 (42%)
Query: 160 RVILAEFETFYLLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNV 218
R + + +T L+N Y P+ + K E +F+ R +++ L +G +I GDLN
Sbjct: 140 RTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNT 199
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H ID H + A+ L + W G G + G +D+YR+LH
Sbjct: 200 AHRPID--HCD---ASSLECFEEDPGRKW-MDGLLSNPGDEAGPHI--GLFMDSYRYLHP 251
Query: 279 EKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
++ F+ WS ++ R+DY L DR + + L GSDHC
Sbjct: 252 KQQR--AFTCWSVVSGARHLNYGSRLDYV-----LGDRALVIDTFQASFLLPEVMGSDHC 304
Query: 338 PV 339
PV
Sbjct: 305 PV 306
Score = 40 (19.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 42 LKFVTWNANS-------LLLRVKNNWPE-FSNFITTFDPDVIALQEVRM 82
L+ V+WN N L + ++ P + D D++ LQE ++
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKV 50
>TIGR_CMR|SO_3037 [details] [associations]
symbol:SO_3037 "exodeoxyribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372
GO:GO:0003677 GO:GO:0006281 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 RefSeq:NP_718605.1
ProteinModelPortal:Q8ECT7 GeneID:1170722 KEGG:son:SO_3037
PATRIC:23525710 Uniprot:Q8ECT7
Length = 270
Score = 98 (39.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 54/233 (23%), Positives = 96/233 (41%)
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTDG--RVILAEF-----ETFYLLN 173
Y + + + Y G A+L K P KV F+ ++ D R+I+ F +LN
Sbjct: 52 YHVHYHGGKAHY-GVAMLSKVA--PLKVQKGFATDEEDAQRRMIIGTFAQANGRPLTVLN 108
Query: 174 TYAPNNGWKEEENSFQRRRKW--DKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFF 231
Y P + + +RK+ D + + + GD+N+S ++D+ E
Sbjct: 109 GYFPQGESIDHPTKYPAKRKFYQDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEV- 167
Query: 232 AAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEK-DMDCGFS 287
N++ W G+ F ER+ L++ L+D +R LH ++ + F
Sbjct: 168 -----------NRKRWLKTGKCSFQPEEREWLKT-LQDWGLVDTFRQLHPDRSERYSWFD 215
Query: 288 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF-YGSDHCPV 339
+ RG +RID + + L R++ ++ EL G SDH P+
Sbjct: 216 YRSKGFDDNRG--LRIDVILATPSLAARLVESDVD---YELRGIDKPSDHAPI 263
Score = 54 (24.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
+K V++N N L R+ + I + PD+I LQE ++
Sbjct: 1 MKIVSFNINGLRSRLH----QLQALIDSHQPDIIGLQETKV 37
>TIGR_CMR|APH_0505 [details] [associations]
symbol:APH_0505 "exodeoxyribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_505100.1 ProteinModelPortal:Q2GKK1 STRING:Q2GKK1
GeneID:3931256 KEGG:aph:APH_0505 PATRIC:20949650 OMA:DVQIGIP
ProtClustDB:CLSK747329 BioCyc:APHA212042:GHPM-529-MONOMER
Uniprot:Q2GKK1
Length = 273
Score = 96 (38.9 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 42/172 (24%), Positives = 87/172 (50%)
Query: 171 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEF 230
+++ Y PN G + E +F + K+ + +++ +L ++ D ++ + +V+ PE
Sbjct: 117 VVSVYVPN-GQEVESETFFYKLKFLEHLKDRLLN-----IMKTEDFLIAGGDFNVA-PE- 168
Query: 231 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR-FLHKEKDMDCGFSWS 289
+++ + P + G+ F I ER +F IL G ++D +R F+ ++ FSW
Sbjct: 169 ----EIDVHDPKALD--GRLCFHILERAKFREILNNG-IVDIFRTFVGIDRKE---FSWW 218
Query: 290 GNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIELEGF-YGSDHCPV 339
G ++ R +RID + S ++ D+++ C + ++ G+ SDH PV
Sbjct: 219 NYREGGWQNNRGLRIDALLSSPQIADKVLDCSILS---KVRGWDTPSDHAPV 267
Score = 55 (24.4 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
++ +TWN NS+ R+++ + ++ DV LQE++
Sbjct: 2 IRVITWNVNSIRKRIEH----LCSVLSEHSIDVAMLQEIK 37
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 360 321 0.00085 116 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 623 (66 KB)
Total size of DFA: 262 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.82u 0.12s 26.94t Elapsed: 00:00:02
Total cpu time: 26.83u 0.12s 26.95t Elapsed: 00:00:02
Start: Tue May 21 05:35:48 2013 End: Tue May 21 05:35:50 2013