BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018111
(360 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224133800|ref|XP_002321664.1| predicted protein [Populus trichocarpa]
gi|222868660|gb|EEF05791.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 286/363 (78%), Positives = 316/363 (87%), Gaps = 13/363 (3%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTE------TSSEENS-KKDPLKFVTWNANSLL 53
MKRFFKPIEK+ SAKKP LS +++D E E T++ N+ KK+PLKF+TWNANSLL
Sbjct: 1 MKRFFKPIEKDGSAKKPTLSTNQEDNEKKEASESEETNNNGNTMKKEPLKFITWNANSLL 60
Query: 54 LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMR 113
LRVKNNWP FS F++ DPDVI +QEVRMPAAGSK APKN E+KDDT +SREEK ILMR
Sbjct: 61 LRVKNNWPGFSKFVSDIDPDVIVIQEVRMPAAGSKGAPKNSGEIKDDTNSSREEKKILMR 120
Query: 114 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEFE 167
ALSS PF NY +WWSLADSKYAGTALLVKKCFQP KVSF+L++T DGRVILAEF+
Sbjct: 121 ALSSSPFGNYNVWWSLADSKYAGTALLVKKCFQPVKVSFALDQTASKHEPDGRVILAEFK 180
Query: 168 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 227
TF LLNTYAPNNGWKEEE SFQRRRKWDKR+ E V+Q S KPLIWCGDLNVSHEEIDVSH
Sbjct: 181 TFRLLNTYAPNNGWKEEEKSFQRRRKWDKRMLEVVVQLSDKPLIWCGDLNVSHEEIDVSH 240
Query: 228 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 287
PEFF+AAK+NGYVPPNKED GQPGFT++ERKRFGAILKEG+LIDAYRFLHKE+DM+ GFS
Sbjct: 241 PEFFSAAKVNGYVPPNKEDCGQPGFTLSERKRFGAILKEGKLIDAYRFLHKERDMERGFS 300
Query: 288 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 347
WSGNPIGKYRGKRMRID+FIVSE+LKDRII CEM GHGIELEGFYGSDHCPVSLELS AS
Sbjct: 301 WSGNPIGKYRGKRMRIDFFIVSEKLKDRIIQCEMHGHGIELEGFYGSDHCPVSLELSPAS 360
Query: 348 SDS 350
DS
Sbjct: 361 PDS 363
>gi|225456791|ref|XP_002277389.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Vitis
vinifera]
gi|297733638|emb|CBI14885.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/358 (76%), Positives = 308/358 (86%), Gaps = 8/358 (2%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKR+F+PI K+ S+KKP+LS D T + S EE KK+PLKF+TWNANS L+RVKNNW
Sbjct: 1 MKRYFQPIGKDGSSKKPSLSKEDGDENTDQVSEEE--KKEPLKFLTWNANSFLIRVKNNW 58
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
PEF+ F++ DPDVIA+QEVRMPAAGSK APKNH ELKDDT +SREEK ILM ALS PPF
Sbjct: 59 PEFTKFVSDLDPDVIAVQEVRMPAAGSKGAPKNHGELKDDTSSSREEKKILMHALSRPPF 118
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEFETFYLLNT 174
NY++WWSLADSKYAGTAL VKKCFQPKKVSFS+++ +GRVILAEFE+F LLNT
Sbjct: 119 GNYRVWWSLADSKYAGTALFVKKCFQPKKVSFSIDQKASKHEPEGRVILAEFESFRLLNT 178
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 234
Y PNNGWK+EE SFQRRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF+AA
Sbjct: 179 YVPNNGWKDEETSFQRRRKWDKRMLEFVVQSSDKPLIWCGDLNVSHEEIDVSHPEFFSAA 238
Query: 235 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 294
K NGYVPPNKED GQPGFT+AER+RFG ILKEG+L+DAYR LHKEKDM+ GFSWSGNPIG
Sbjct: 239 KHNGYVPPNKEDCGQPGFTLAERRRFGGILKEGKLVDAYRLLHKEKDMEGGFSWSGNPIG 298
Query: 295 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 352
KYRGKRMRIDYFIV E LKDRI+ACE+ G GIEL+GFYGSDHCPVSLELSE SS S +
Sbjct: 299 KYRGKRMRIDYFIVPEALKDRIVACEIHGQGIELKGFYGSDHCPVSLELSETSSGSNQ 356
>gi|449487730|ref|XP_004157772.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase-like [Cucumis sativus]
Length = 361
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/354 (77%), Positives = 308/354 (87%), Gaps = 6/354 (1%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE S+KK ALSPS KDG+ ++ + KK+PLKFVTWNANSLLLRVKN+W
Sbjct: 1 MKRFFKPIEKEGSSKKVALSPSLKDGDDGDSEASVPDKKEPLKFVTWNANSLLLRVKNDW 60
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
EF+ F+T DPD IA+QEVR+PAAGSK A KN ELKDDT SREEK +LMRALSSPPF
Sbjct: 61 SEFTKFVTNLDPDAIAIQEVRIPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPF 120
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK------TDGRVILAEFETFYLLNT 174
NY++WWSL+DSKYAGTAL +KKCFQPKKV F+L++ DGRVILAEFETF LLNT
Sbjct: 121 ANYRVWWSLSDSKYAGTALFIKKCFQPKKVXFNLDRIASKHEVDGRVILAEFETFRLLNT 180
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 234
Y+PNNGWKEEE SF+RRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AA
Sbjct: 181 YSPNNGWKEEEKSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAA 240
Query: 235 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 294
KLNGY+PPNKED GQPGFT+AER RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIG
Sbjct: 241 KLNGYIPPNKEDCGQPGFTLAERNRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIG 300
Query: 295 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 348
KYRGKRMRIDYF+VSE L RI++CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 301 KYRGKRMRIDYFLVSESLVGRIVSCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|449469598|ref|XP_004152506.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cucumis
sativus]
Length = 361
Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/354 (77%), Positives = 308/354 (87%), Gaps = 6/354 (1%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE S+KK ALSPS KDG+ ++ + KK+PLKFVTWNANSLLLRVKN+W
Sbjct: 1 MKRFFKPIEKEGSSKKVALSPSLKDGDDGDSEASVPDKKEPLKFVTWNANSLLLRVKNDW 60
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
EF+ F+T DPD IA+QEVR+PAAGSK A KN ELKDDT SREEK +LMRALSSPPF
Sbjct: 61 SEFTKFVTNLDPDAIAIQEVRIPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPF 120
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK------TDGRVILAEFETFYLLNT 174
NY++WWSL+DSKYAGTAL +KKCFQPKKV F+L++ DGRVILAEFETF LLNT
Sbjct: 121 ANYRVWWSLSDSKYAGTALFIKKCFQPKKVFFNLDRIASKHEVDGRVILAEFETFRLLNT 180
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 234
Y+PNNGWKEEE SF+RRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AA
Sbjct: 181 YSPNNGWKEEEKSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAA 240
Query: 235 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 294
KLNGY+PPNKED GQPGFT+AER RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIG
Sbjct: 241 KLNGYIPPNKEDCGQPGFTLAERNRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIG 300
Query: 295 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 348
KYRGKRMRIDYF+VSE L RI++CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 301 KYRGKRMRIDYFLVSESLVGRIVSCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|297816036|ref|XP_002875901.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
gi|297321739|gb|EFH52160.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/365 (75%), Positives = 313/365 (85%), Gaps = 9/365 (2%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K++G+ + EE ++K+P KFVTWNANS LLRVKN
Sbjct: 321 MKRFFKPIEKEGSTAAKKPCLSPEKREGDG-DGVEEEKNQKEPSKFVTWNANSFLLRVKN 379
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
+W +FS F++ FDPDVIA+QEVRMPAAG K PKN +EL DDTK REEK IL RALSSP
Sbjct: 380 DWSQFSKFVSDFDPDVIAVQEVRMPAAGGKGKPKNPEELSDDTKVLREEKQILTRALSSP 439
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEFETFYLL 172
PF NY++WWSLADSKYAGTALLVKKCF+PKKV F+L+K DGRVILAEFETF LL
Sbjct: 440 PFGNYRVWWSLADSKYAGTALLVKKCFKPKKVYFNLDKLASKHEPDGRVILAEFETFRLL 499
Query: 173 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 232
NTY+PNNGWKEEENSFQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 500 NTYSPNNGWKEEENSFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 559
Query: 233 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 292
AKLNGYVPPNKED GQPGFT +ER+RFG +KEG L+DAYR+LHKE+DM+ GFSWSGNP
Sbjct: 560 TAKLNGYVPPNKEDCGQPGFTPSERRRFGETMKEGMLVDAYRYLHKEQDMESGFSWSGNP 619
Query: 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 352
IGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGFYGSDHCPV+LELS+ SS++E+
Sbjct: 620 IGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFYGSDHCPVTLELSKPSSETEQ 679
Query: 353 REKKN 357
+ N
Sbjct: 680 NQVSN 684
>gi|4678346|emb|CAB41156.1| putative protein [Arabidopsis thaliana]
Length = 686
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/365 (74%), Positives = 312/365 (85%), Gaps = 9/365 (2%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K+DG+ + EE ++ +P KF+TWNANS LLRVKN
Sbjct: 323 MKRFFKPIEKENSPAAKKPCLSPEKRDGDG-DGVEEEKNQNEPSKFMTWNANSFLLRVKN 381
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
+W +FS F++ FDPDVIA+QEVRMPAAG K PKNH+EL DDTK REEK IL RALSSP
Sbjct: 382 DWSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSP 441
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEFETFYLL 172
PF NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K DGRVILAEFETF LL
Sbjct: 442 PFGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLL 501
Query: 173 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 232
NTY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 502 NTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 561
Query: 233 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 292
AKLNGYVPPNKED GQPGFT +ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNP
Sbjct: 562 TAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNP 621
Query: 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 352
IGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+
Sbjct: 622 IGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQ 681
Query: 353 REKKN 357
+ N
Sbjct: 682 NQVSN 686
>gi|42565714|ref|NP_566904.2| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
gi|53828525|gb|AAU94372.1| At3g48425 [Arabidopsis thaliana]
gi|55733769|gb|AAV59281.1| At3g48425 [Arabidopsis thaliana]
gi|332644894|gb|AEE78415.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 364
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/365 (74%), Positives = 312/365 (85%), Gaps = 9/365 (2%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K+DG+ + EE ++ +P KF+TWNANS LLRVKN
Sbjct: 1 MKRFFKPIEKENSPAAKKPCLSPEKRDGDG-DGVEEEKNQNEPSKFMTWNANSFLLRVKN 59
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
+W +FS F++ FDPDVIA+QEVRMPAAG K PKNH+EL DDTK REEK IL RALSSP
Sbjct: 60 DWSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSP 119
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEFETFYLL 172
PF NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K DGRVILAEFETF LL
Sbjct: 120 PFGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLL 179
Query: 173 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 232
NTY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 180 NTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 239
Query: 233 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 292
AKLNGYVPPNKED GQPGFT +ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNP
Sbjct: 240 TAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNP 299
Query: 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 352
IGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+
Sbjct: 300 IGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQ 359
Query: 353 REKKN 357
+ N
Sbjct: 360 NQVSN 364
>gi|356508768|ref|XP_003523126.1| PREDICTED: exodeoxyribonuclease-like [Glycine max]
Length = 355
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/356 (73%), Positives = 299/356 (83%), Gaps = 16/356 (4%)
Query: 1 MKRFFKPIEKEC--SAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFK +EK+ S KKP E + E N KK+PLKF+TWNANS LLRVKN
Sbjct: 1 MKRFFKVVEKDSDGSVKKPR--------ENDSEAEESNEKKEPLKFMTWNANSFLLRVKN 52
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
NWP+F+N ITTFDPD+IA+QEVRMPAAG+K A K E+KDDT A+REEK IL RALS+P
Sbjct: 53 NWPDFTNLITTFDPDLIAIQEVRMPAAGAKGASKIQGEIKDDTSAAREEKKILTRALSAP 112
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEFETFYLL 172
PF NY +WWSLADSKYAGTALLVKKCF+PK V F+L+K DGRVIL EFET LL
Sbjct: 113 PFGNYHVWWSLADSKYAGTALLVKKCFKPKSVVFNLDKLASKHEPDGRVILVEFETLRLL 172
Query: 173 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 232
NTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVSHP+FF+
Sbjct: 173 NTYVPNNGWKEEANSFQRRRKWDKRILEFVTQSSDKPLIWCGDLNVSHEEIDVSHPDFFS 232
Query: 233 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 292
AKLNGY+PPNKED GQPGFT++ERKRFG IL+EG+L+DAYRFLH++KDM+ GFSWSGNP
Sbjct: 233 VAKLNGYIPPNKEDCGQPGFTLSERKRFGTILREGKLVDAYRFLHEDKDMERGFSWSGNP 292
Query: 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 348
+G+YRGKRMRIDYF+VSE+LK+RI ACEM+GHGIELEGFYGSDHCPV+LELS +S+
Sbjct: 293 VGRYRGKRMRIDYFLVSEKLKERIAACEMRGHGIELEGFYGSDHCPVTLELSPSSN 348
>gi|358348989|ref|XP_003638523.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504458|gb|AES85661.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 367
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/362 (72%), Positives = 300/362 (82%), Gaps = 16/362 (4%)
Query: 1 MKRFFKPIEKE---CSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK 57
MKRFFK IEK+ CS K ++ + + + EE +KK+PLKF+TWNANSLLLRVK
Sbjct: 1 MKRFFKVIEKDSEKCSKKPKENENEEEKKQ--DENEEEATKKEPLKFMTWNANSLLLRVK 58
Query: 58 NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDA-----PKNHQELKDDTKASREEKLILM 112
NNW EFSNFITTFDPDVIA+QEVRMPAA S + PKN E+KDDT A+REEK ILM
Sbjct: 59 NNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAEVKDDTNAAREEKRILM 118
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEF 166
RALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V F+L+K DGRVIL EF
Sbjct: 119 RALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEF 178
Query: 167 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 226
ET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVS
Sbjct: 179 ETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQNSDKPLIWCGDLNVSHEEIDVS 238
Query: 227 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 286
PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL+EG+L+DAYRFLHK+KDM+ GF
Sbjct: 239 QPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILREGKLVDAYRFLHKDKDMEQGF 298
Query: 287 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 346
SWSGNPIG+YRGKRMRIDYFIVSE++K++I ACEM G GIEL+GFYGSDHCPV+LELS +
Sbjct: 299 SWSGNPIGRYRGKRMRIDYFIVSEKIKEKIAACEMHGKGIELQGFYGSDHCPVTLELSPS 358
Query: 347 SS 348
S+
Sbjct: 359 SN 360
>gi|357160291|ref|XP_003578718.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Brachypodium distachyon]
Length = 369
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/363 (68%), Positives = 295/363 (81%), Gaps = 14/363 (3%)
Query: 1 MKRFFKPIEKECSAKKPALSP-------SKKDGETTETSSEENSKKDPLKFVTWNANSLL 53
MKRFF+P+ KE S K S E ++P +F+TWNANSLL
Sbjct: 1 MKRFFQPVPKEGSPAKRRPSEVVASDCVDGPAATAAGAGGEGAPGQEPRRFMTWNANSLL 60
Query: 54 LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMR 113
LR+K++WP F F++ DPDVI +QEVRMPAAGSK APKN ELKDDT +SREEK I++R
Sbjct: 61 LRMKSDWPAFCQFVSRLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSSSREEKQIVLR 120
Query: 114 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEFE 167
ALSS PFK+Y++WWSL+DSKYAGTA+ VKK F+PKKVSF+L++T DGRVI+ EFE
Sbjct: 121 ALSSSPFKDYRVWWSLSDSKYAGTAVFVKKMFEPKKVSFNLDRTSSKHESDGRVIIVEFE 180
Query: 168 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 227
+ LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KP IWCGDLNVSHEEIDVSH
Sbjct: 181 SLLLLNTYAPNNGWKEEENSFQRRRKWDKRMFEFVQQVD-KPFIWCGDLNVSHEEIDVSH 239
Query: 228 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 287
P+FF++AKLNGY+PPNKED GQPGFT+AER+RFG IL +G+L+DAYR LHKEKDM+CGFS
Sbjct: 240 PDFFSSAKLNGYIPPNKEDCGQPGFTLAERQRFGNILSQGKLVDAYRHLHKEKDMECGFS 299
Query: 288 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 347
WSGNPIGKYRGKRMRIDYFIVSE LKDR+++CE+ GHGIELEGFYGSDHCPVSLELS+ +
Sbjct: 300 WSGNPIGKYRGKRMRIDYFIVSERLKDRLVSCEIHGHGIELEGFYGSDHCPVSLELSKDA 359
Query: 348 SDS 350
+++
Sbjct: 360 AEA 362
>gi|242078097|ref|XP_002443817.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
gi|241940167|gb|EES13312.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
Length = 369
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/370 (67%), Positives = 301/370 (81%), Gaps = 16/370 (4%)
Query: 1 MKRFFKPIEKECS--------AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSL 52
MKRFF+P+ K+ S A +P P+ G T E ++P KF+TWNANSL
Sbjct: 1 MKRFFQPVAKDGSPSKKRQAAAAEPEGGPASA-GAATGGDGEGRPAEEPRKFLTWNANSL 59
Query: 53 LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112
LLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT +SR+EK +++
Sbjct: 60 LLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSSSRDEKQVVL 119
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEF 166
RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T DGRVI+AEF
Sbjct: 120 RALSTSPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHETDGRVIIAEF 179
Query: 167 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 226
E+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDVS
Sbjct: 180 ESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDVS 238
Query: 227 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 286
HP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL +G+L+DAYR LHKEKDMD GF
Sbjct: 239 HPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDMDGGF 298
Query: 287 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 346
SWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSDHCPV+LELS+A
Sbjct: 299 SWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSDHCPVTLELSKA 358
Query: 347 SSDSEKREKK 356
+++ + K
Sbjct: 359 VAEAAPEQPK 368
>gi|115488172|ref|NP_001066573.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|77554323|gb|ABA97119.1| exodeoxyribonuclease III family protein, expressed [Oryza sativa
Japonica Group]
gi|113649080|dbj|BAF29592.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|215687325|dbj|BAG91875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616909|gb|EEE53041.1| hypothetical protein OsJ_35763 [Oryza sativa Japonica Group]
Length = 379
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/373 (66%), Positives = 305/373 (81%), Gaps = 33/373 (8%)
Query: 1 MKRFFKPIEKECSA--KKPALSPSKK--------------------DGETTETSSEENSK 38
MKRFF+P+ K+ S K+PA + + +G++ EE
Sbjct: 1 MKRFFQPVPKDGSPAKKRPAAAAAASASDSDSLGGDAPAAAACAVGEGDSPPAPREE--- 57
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
+P +FVTWNANSLLLR+K++WP F F++ DPDVI +QEVRMPAAGSK APKN +LK
Sbjct: 58 -EPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAPKNPGQLK 116
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT- 157
DDT +SR+EK +++RALSSPPFK+Y++WWSL+DSKYAGTA+++KK F+PKKVSF+L++T
Sbjct: 117 DDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKKVSFNLDRTS 176
Query: 158 -----DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIW 212
DGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIW
Sbjct: 177 SKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVD-KPLIW 235
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKED GQPGFT++ER+RFG IL +G+L+DA
Sbjct: 236 CGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLSERRRFGNILSQGKLVDA 295
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
YR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDYF+VSE+LKD+I++C++ G GIELEGFY
Sbjct: 296 YRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDYFLVSEKLKDQIVSCDIHGRGIELEGFY 355
Query: 333 GSDHCPVSLELSE 345
GSDHCPVSLELSE
Sbjct: 356 GSDHCPVSLELSE 368
>gi|226531290|ref|NP_001144669.1| uncharacterized protein LOC100277695 [Zea mays]
gi|195645474|gb|ACG42205.1| hypothetical protein [Zea mays]
gi|238007716|gb|ACR34893.1| unknown [Zea mays]
gi|413917521|gb|AFW57453.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 373
Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/364 (68%), Positives = 301/364 (82%), Gaps = 16/364 (4%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAE 165
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 166 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDV 225
FE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDV
Sbjct: 181 FESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDV 239
Query: 226 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 285
SHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL +G+L+DAYR LHKEKD+D G
Sbjct: 240 SHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDIDGG 299
Query: 286 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 345
FSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSDHCPVSLELSE
Sbjct: 300 FSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSDHCPVSLELSE 359
Query: 346 ASSD 349
A ++
Sbjct: 360 AVAE 363
>gi|413917522|gb|AFW57454.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 383
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/374 (66%), Positives = 301/374 (80%), Gaps = 26/374 (6%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAE 165
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 166 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDV 225
FE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDV
Sbjct: 181 FESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDV 239
Query: 226 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 285
SHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL +G+L+DAYR LHKEKD+D G
Sbjct: 240 SHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDIDGG 299
Query: 286 FSWSGNPIG----------KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
FSWSG+PIG +YRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSD
Sbjct: 300 FSWSGHPIGNEINFSAYASRYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSD 359
Query: 336 HCPVSLELSEASSD 349
HCPVSLELSEA ++
Sbjct: 360 HCPVSLELSEAVAE 373
>gi|255540403|ref|XP_002511266.1| ap endonuclease, putative [Ricinus communis]
gi|223550381|gb|EEF51868.1| ap endonuclease, putative [Ricinus communis]
Length = 326
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/350 (71%), Positives = 277/350 (79%), Gaps = 27/350 (7%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE SAKKPAL+ +G+ E + K PLKF+TWNANSLLLR KN+W
Sbjct: 1 MKRFFKPIEKEGSAKKPALAQEDSEGKIGENGDNNTTNKQPLKFITWNANSLLLRAKNDW 60
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
PEF+ F++T DPDVIA+QEVRMPAAGSK APKN ELKDDT +SREEK ILMRALSSPPF
Sbjct: 61 PEFTKFVSTLDPDVIAIQEVRMPAAGSKGAPKNPGELKDDTSSSREEKQILMRALSSPPF 120
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNG 180
+Y+IWWSLADSKYAGTALLVKK F KVSFSL+K+ G
Sbjct: 121 GSYKIWWSLADSKYAGTALLVKKRFHNIKVSFSLDKSGG--------------------- 159
Query: 181 WKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 240
+SF R +K DKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF AAK NGYV
Sbjct: 160 -----DSF-REKKMDKRMLEFVVQLSDKPLIWCGDLNVSHEEIDVSHPEFFIAAKQNGYV 213
Query: 241 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 300
PPNKED GQPGFT+ ERKRFG+IL+EG+LIDAYRFLHKEKDM+ GFSWSGNPIGKYRGKR
Sbjct: 214 PPNKEDCGQPGFTLNERKRFGSILREGKLIDAYRFLHKEKDMERGFSWSGNPIGKYRGKR 273
Query: 301 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 350
MRIDYFIVSE+LK RII+CEM G GIEL+GFYGSDHCPVSLEL + DS
Sbjct: 274 MRIDYFIVSEKLKGRIISCEMHGQGIELQGFYGSDHCPVSLELVPTTCDS 323
>gi|46200513|gb|AAL73527.2|AF466200_6 putative AP endonuclease [Sorghum bicolor]
Length = 348
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/380 (58%), Positives = 275/380 (72%), Gaps = 57/380 (15%)
Query: 1 MKRFFKPIEKECS--------AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSL 52
MKRFF+P+ K+ S A +P P+ G T E ++P KF+TWNANSL
Sbjct: 1 MKRFFQPVAKDGSPSKKRQAAAAEPEGGPASA-GAATGGDGEGRPAEEPRKFLTWNANSL 59
Query: 53 LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112
LLR+K++WP FS + DPDVI +Q +++
Sbjct: 60 LLRMKSDWPAFSQLVARLDPDVICVQ-------------------------------VVL 88
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEF 166
RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T DGRVI+AEF
Sbjct: 89 RALSTSPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHETDGRVIIAEF 148
Query: 167 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 226
E+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDVS
Sbjct: 149 ESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDVS 207
Query: 227 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 286
HP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL +G+L+DAYR LHKEKDMD GF
Sbjct: 208 HPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDMDGGF 267
Query: 287 SWSGNPIG----------KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
SWSG+PIG +YRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSDH
Sbjct: 268 SWSGHPIGNEINFSAYSSRYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSDH 327
Query: 337 CPVSLELSEASSDSEKREKK 356
CPV+LELS+A +++ + K
Sbjct: 328 CPVTLELSKAVAEAAPEQPK 347
>gi|302823174|ref|XP_002993241.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
gi|300138911|gb|EFJ05662.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
Length = 351
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/352 (58%), Positives = 265/352 (75%), Gaps = 19/352 (5%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFF+P+E++ ++KKP+++ + + EN+ DP +F++WNANSLLLR KNN
Sbjct: 1 MKRFFQPVERDGASKKPSIAIA---------NGGENACADPSRFMSWNANSLLLRFKNNR 51
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
E +FI FDPDVI +QEVR+PAAG K KN E+KDD+ A+R +K +MR LS P
Sbjct: 52 EEVMSFIRGFDPDVICIQEVRLPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPM 111
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---------KTDGRVILAEFETFYL 171
+Y +WWSL ++KYAGTAL VK CF+P V+F+++ + DGR+ILAEF +F L
Sbjct: 112 ADYSVWWSLGENKYAGTALFVKNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTL 171
Query: 172 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFF 231
LNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFF
Sbjct: 172 LNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFF 230
Query: 232 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 291
A A GY PPNKED GQPGFT+ ER RF AIL G L+D YR LH+++D++ GF+WSGN
Sbjct: 231 ANATQPGYTPPNKEDAGQPGFTLNERARFSAILNRGNLVDTYRHLHEKQDLEAGFTWSGN 290
Query: 292 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
P+GKYRGKRMRIDYF++S+ L R+ + ++ G GIELEGF GSDHCP+++EL
Sbjct: 291 PVGKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
>gi|302824275|ref|XP_002993782.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
gi|300138378|gb|EFJ05148.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
Length = 351
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/352 (58%), Positives = 264/352 (75%), Gaps = 19/352 (5%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFF+P+E++ ++KKP+++ + + EN+ DP +F++WNANSLLLR KNN
Sbjct: 1 MKRFFQPVERDGASKKPSIAIA---------NGGENACADPSRFMSWNANSLLLRFKNNR 51
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
E +FI FDPDVI +QEVR+PAAG K KN E+KDD+ A+R +K +MR LS P
Sbjct: 52 EEVMSFIRGFDPDVICIQEVRLPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPM 111
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---------KTDGRVILAEFETFYL 171
+Y +WWSL ++KYAGTAL VK CF+P V+F+++ + DGR+ILAEF +F L
Sbjct: 112 ADYSVWWSLGENKYAGTALFVKNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTL 171
Query: 172 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFF 231
LNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFF
Sbjct: 172 LNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFF 230
Query: 232 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 291
A A GY PPNKED GQPGFT+ ER RF IL G L+D YR LH+++D++ GF+WSGN
Sbjct: 231 ANATQPGYTPPNKEDAGQPGFTLNERARFSTILNRGNLVDTYRHLHEKQDLEAGFTWSGN 290
Query: 292 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
P+GKYRGKRMRIDYF++S+ L R+ + ++ G GIELEGF GSDHCP+++EL
Sbjct: 291 PVGKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
>gi|326511341|dbj|BAJ87684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/273 (75%), Positives = 240/273 (87%), Gaps = 11/273 (4%)
Query: 88 KDAPKNHQ----ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK 143
+ PK HQ ELKDDT +SREEK I++RALSS PFK+Y++WWSL+DSKYAGTA+ +KK
Sbjct: 28 QQVPKGHQKNPSELKDDTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSKYAGTAVFMKK 87
Query: 144 CFQPKKVSFSLEKT------DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 197
F+PKKVSF+L++T DGRVI+ EFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR
Sbjct: 88 KFEPKKVSFNLDRTSSKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKR 147
Query: 198 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 257
+ EFV Q KPLIWCGDLNVSH EIDVSHP+FF+ AKLNGY+PPNKED GQPGFT+AER
Sbjct: 148 MLEFVQQVD-KPLIWCGDLNVSHGEIDVSHPDFFSDAKLNGYIPPNKEDCGQPGFTLAER 206
Query: 258 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 317
+RFG IL +G+L+DAYR+LHKEKDM+CGFSWSGNPIGKYRGKRMRIDYF+VSE LKDRI+
Sbjct: 207 QRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSEGLKDRIV 266
Query: 318 ACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 350
+CEM GHGIELEGFYGSDHCPVSLELS+ ++++
Sbjct: 267 SCEMHGHGIELEGFYGSDHCPVSLELSKEAAEA 299
>gi|168031629|ref|XP_001768323.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680501|gb|EDQ66937.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 369
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/359 (56%), Positives = 265/359 (73%), Gaps = 7/359 (1%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFK I +E S K+ L+ S+ + T + E++ K++P KF++WN NS LLR+K N
Sbjct: 1 MKRFFKSIGREGSFKR--LATSRGEDGTPTCAREDSEKREPTKFMSWNTNSFLLRLKTNR 58
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
E + + DPDVIA+QEVR+P+AG K P+NH ELKDDT ++RE+K I+MRALS P
Sbjct: 59 EEVLSLLRRLDPDVIAIQEVRIPSAGRKGEPRNHGELKDDTNSAREDKQIMMRALSVSPL 118
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE-----KTDGRVILAEFETFYLLNTY 175
+Y +WWSL+DSKY GTALLVK P + +SL+ + DGRVILAEF +F LLNTY
Sbjct: 119 SDYGVWWSLSDSKYGGTALLVKHSCSPISILYSLDDKLKHEADGRVILAEFHSFRLLNTY 178
Query: 176 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 235
PNN WK+++N F RRR WD R+ EF+ + KPLIWCGDLNVS+E IDVSHP+FF+ AK
Sbjct: 179 VPNNSWKDDDNGFARRRAWDARMIEFLKRPHKKPLIWCGDLNVSNEVIDVSHPDFFSNAK 238
Query: 236 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 295
L GY PPN ED GQPGFT+ ER+RF L +G L+D YR LHK++D D GF+WSGNP+GK
Sbjct: 239 LQGYTPPNAEDIGQPGFTLGERQRFAECLSKGDLVDTYRHLHKQQDFDAGFTWSGNPVGK 298
Query: 296 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKRE 354
YRGKRMRIDYF++S +L DR+++ ++ G GIE EGF GSDHCP+++E+ A+ + K E
Sbjct: 299 YRGKRMRIDYFLLSRKLLDRLVSSDIHGQGIEQEGFCGSDHCPITMEIRTATKEIAKVE 357
>gi|358348991|ref|XP_003638524.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504459|gb|AES85662.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 278
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/280 (71%), Positives = 223/280 (79%), Gaps = 16/280 (5%)
Query: 1 MKRFFKPIEKE---CSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK 57
MKRFFK IEK+ CS K ++ + + + EE +KK+PLKF+TWNANSLLLRVK
Sbjct: 1 MKRFFKVIEKDSEKCSKKPKENENEEEKKQ--DENEEEATKKEPLKFMTWNANSLLLRVK 58
Query: 58 NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDA-----PKNHQELKDDTKASREEKLILM 112
NNW EFSNFITTFDPDVIA+QEVRMPAA S + PKN E+KDDT A+REEK ILM
Sbjct: 59 NNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAEVKDDTNAAREEKRILM 118
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEF 166
RALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V F+L+K DGRVIL EF
Sbjct: 119 RALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEF 178
Query: 167 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 226
ET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVS
Sbjct: 179 ETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQNSDKPLIWCGDLNVSHEEIDVS 238
Query: 227 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL+E
Sbjct: 239 QPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILRE 278
>gi|148908559|gb|ABR17389.1| unknown [Picea sitchensis]
Length = 303
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/286 (59%), Positives = 210/286 (73%), Gaps = 20/286 (6%)
Query: 1 MKRFFKPIEKECSAKK---------PALSPSKKDGETTETSSEE--NSKKDPLKFVTWNA 49
MKR+F+P+EK+ S KK SP +G T +EE KK+PLKF++WNA
Sbjct: 1 MKRYFQPVEKDGSFKKHKEQLTANPSHSSPPTSNGTTVPPQAEEADGVKKEPLKFMSWNA 60
Query: 50 NSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKL 109
NSLLLR+K N E ++F+ DPDVIA+QEVR+PAAG K KN ELKDDT ++REEK
Sbjct: 61 NSLLLRLKKNRTELADFVQRLDPDVIAIQEVRIPAAGGKGGSKNQGELKDDTSSAREEKQ 120
Query: 110 ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK---------TDGR 160
LMRA+S PP NY++WWSL D+KYAGTAL VK QP KV+FSL++ DGR
Sbjct: 121 TLMRAISCPPLSNYRVWWSLGDTKYAGTALFVKHQCQPLKVTFSLDQIGSSALKHEVDGR 180
Query: 161 VILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSH 220
VI+AEFE F LLN+Y PNNGWK++E F+RRRKWD+R+ +FVL S KPLIWCGDLNVSH
Sbjct: 181 VIVAEFEGFRLLNSYVPNNGWKDDETGFRRRRKWDQRMLDFVLGVSDKPLIWCGDLNVSH 240
Query: 221 EEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
++IDVSHPEFF+ AK+ GY+PPNKED GQPGFTIAER+RF IL +
Sbjct: 241 QDIDVSHPEFFSNAKIAGYMPPNKEDCGQPGFTIAERRRFSTILSQ 286
>gi|218186665|gb|EEC69092.1| hypothetical protein OsI_37986 [Oryza sativa Indica Group]
Length = 470
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/273 (61%), Positives = 210/273 (76%), Gaps = 33/273 (12%)
Query: 1 MKRFFKPIEKECSA--KKPALSPSKK--------------------DGETTETSSEENSK 38
MKRFF+P+ K+ S K+PA + + +G++ EE
Sbjct: 1 MKRFFQPVPKDGSPAKKRPAAAAAASASDSDSLGGDAPAAAACAVGEGDSPPAPREE--- 57
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
+P +FVTWNANSLLLR+K++WP F F++ DPDVI +QEVRMPAAGSK APKN +LK
Sbjct: 58 -EPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAPKNPGQLK 116
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT- 157
DDT +SR+EK +++RALSSPPFK+Y++WWSL+DSKYAGTA+++KK F+PKKVSF+L++T
Sbjct: 117 DDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKKVSFNLDRTS 176
Query: 158 -----DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIW 212
DGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIW
Sbjct: 177 SKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVD-KPLIW 235
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 245
CGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKE
Sbjct: 236 CGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKE 268
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 95/100 (95%)
Query: 246 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 305
D GQPGFT++ER+RFG IL +G+L+DAYR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDY
Sbjct: 360 DCGQPGFTLSERRRFGNILSQGKLVDAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDY 419
Query: 306 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 345
F+VSE+LKD+I++C++ G GIELEGFYGSDHCPVSLELSE
Sbjct: 420 FLVSEKLKDQIVSCDIHGRGIELEGFYGSDHCPVSLELSE 459
>gi|194695010|gb|ACF81589.1| unknown [Zea mays]
gi|413917519|gb|AFW57451.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 161
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 121/157 (77%), Positives = 138/157 (87%), Gaps = 1/157 (0%)
Query: 200 EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 259
EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT AER+R
Sbjct: 3 EFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRR 61
Query: 260 FGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 319
FG IL +G+L+DAYR LHKEKD+D GFSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++C
Sbjct: 62 FGNILFQGKLVDAYRHLHKEKDIDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSC 121
Query: 320 EMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 356
EM G GIEL+GFYGSDHCPVSLELSEA ++ + K
Sbjct: 122 EMHGRGIELDGFYGSDHCPVSLELSEAVAEEAPGQPK 158
>gi|255085372|ref|XP_002505117.1| predicted protein [Micromonas sp. RCC299]
gi|226520386|gb|ACO66375.1| predicted protein [Micromonas sp. RCC299]
Length = 418
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 160/404 (39%), Positives = 208/404 (51%), Gaps = 63/404 (15%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLL--LRV 56
MKRFF+P + S AK P+ G T + + + + DP FVTWNANSLL LR
Sbjct: 1 MKRFFQPAVPDPSKRAKGSGDDPTGLGG-TAKGLGDNDKRSDPRSFVTWNANSLLGRLRK 59
Query: 57 KNNWPEFSNFITTFD-PDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115
+ + ++ D PDVI +QE +PAA AP LKDDTKA+RE+ ++ L
Sbjct: 60 QPDKDALFEYLREKDLPDVICVQETWLPAA----APNRRGTLKDDTKAAREDAALIHLCL 115
Query: 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD----------GRVILAE 165
P Y+ +WS AD K AG A+LVKK V SL ++ GRV+L E
Sbjct: 116 RQKPLSAYRPYWSCADVKRAGCAVLVKKDVDVVSVRRSLTASNGANGDVAHDEGRVLLLE 175
Query: 166 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------------------ 207
F +F LLNTYA NNGW +E SF +RR+WD + F+ +
Sbjct: 176 FRSFVLLNTYAQNNGWTQE--SFAKRRRWDAEVHAFIAGNTAGATPRPRFDDSDLNATSR 233
Query: 208 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY-------VPPNKEDWGQPGFTIAERK 258
KPL+W GDLNV H+EIDV+HP FFA K G P + D GQPGFT ER
Sbjct: 234 RFKPLMWTGDLNVCHKEIDVTHPRFFATQKPEGRKGKPPPETPTDPGDCGQPGFTRNERT 293
Query: 259 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP----IGKYRGKRMRIDYFIVSEELKD 314
RF ++ L+DAYR + D+ +W G+P +GKYRG MR+DYF V EL +
Sbjct: 294 RFERLVTAHALVDAYR--RQRGDVKDAMTWMGHPGVVAVGKYRGMGMRLDYFFVETELAN 351
Query: 315 RIIACEMQGHGIEL--------EGFYGSDHCPVSLELSEASSDS 350
R+ CE G+ L F+GSDHC V L L + D
Sbjct: 352 RVEVCEQATDGMGLAAMAERPASAFFGSDHCAVYLRLKDVPLDG 395
>gi|124504779|ref|XP_001351132.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
gi|15375379|emb|CAB39006.2| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
Length = 617
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 189/350 (54%), Gaps = 49/350 (14%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------- 86
N K D VTWN NS+ +R KN W EF NF + DV+ QEVR+PA
Sbjct: 272 NIKNDVKIIVTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEVRLPAMNLSEPCDN 331
Query: 87 ------SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL 140
D ++ ++K+ + S + I+ + L+ FK+Y ++SLA+ KY+G +L
Sbjct: 332 KNKNKNKNDGIRDRGKIKNSDQKSLADYEIMEQILNDD-FKDYNAYFSLANIKYSGQLVL 390
Query: 141 VKKCFQPKKVSFSL--------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 192
VKK + + ++L +GRVIL EF F+LL+TY PNNG+ + F+RRR
Sbjct: 391 VKKNIHIESIRYNLFFENNAHIHHDEGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRR 448
Query: 193 KWDKRIQEFVLQCSG---KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 249
+D+++Q+FV KPL+W GDLN++ E+ID+SHP F K G VP KE GQ
Sbjct: 449 LFDEQLQKFVTILRNEKQKPLVWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFIGQ 505
Query: 250 PGFTIAERKRFGAILKEGRLIDAYRFL--------------HKEKDMDCGFSWSGNP--I 293
PG T ERK F IL G L+D+YR+L H D ++W P +
Sbjct: 506 PGCTDFERKNFQKILTAGNLVDSYRYLQNIKLNEDKKNNIKHTPNINDNIYTWRC-PFLL 564
Query: 294 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
GK K MRID+FIVS+E +RI +QG + FYGSDHCPV L L
Sbjct: 565 GKSCNKAMRIDHFIVSKEFLNRINKIHIQGFSVFHNNFYGSDHCPVILYL 614
>gi|70954382|ref|XP_746240.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium chabaudi chabaudi]
gi|56526785|emb|CAH87963.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium chabaudi chabaudi]
Length = 350
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 189/350 (54%), Gaps = 59/350 (16%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
VTWN NS+ +R KN W +F F+ + DV+ QEVR+PA + PKN + +D
Sbjct: 8 IVTWNMNSITVRYKNKDKWKKFIKFVNEINADVLCFQEVRLPAL---NIPKNEEVKVEDN 64
Query: 102 KA---SREEKLI---------------------LMRALSSPPFKNYQIWWSLADSKYAGT 137
K + EK+I ++ + FK Y ++SLA+ KY+G
Sbjct: 65 KTYGRKKTEKIIDEERDRGSVKNTDQKSLLDYNIVEDILKKDFKEYNAYFSLANIKYSGQ 124
Query: 138 ALLVKKCFQPKKVSFSL--------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ 189
+LVKK + K V ++L +GR+IL EF FYLL+TY+PNNG+ + F+
Sbjct: 125 LVLVKKTIEVKSVRYNLSFDTNPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DAPKFE 182
Query: 190 RRRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 247
RRR +D ++EFVL + K LIW GDLN++ E+ID+SHP F K G VP KE
Sbjct: 183 RRRLFDDSMKEFVLFMKKENKNLIWTGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYI 239
Query: 248 GQPGFTIAERKRFGAILKEGRLIDAYRFLH------------KEKDMDCGFSWSGNP--I 293
GQPG T AERK F ILK G L+D+YR+ K D ++W P I
Sbjct: 240 GQPGCTDAERKNFKTILKNGDLVDSYRYFENYKIKNDPTYKKKTNINDNIYTWRC-PFLI 298
Query: 294 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
GK + MRID+FIVS+ L D+I E+ G+ + FYGSDHCPV L +
Sbjct: 299 GKSCNRAMRIDHFIVSKSLLDKIENVEIHGYSVSHTNFYGSDHCPVILNM 348
>gi|221481831|gb|EEE20201.1| ap endonuclease, putative [Toxoplasma gondii GT1]
Length = 630
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 199/375 (53%), Gaps = 53/375 (14%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 171 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 230
Query: 70 FDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRALSSPPFKNY 123
DPD++ LQEV++ A G A P++H +KD K S E L AL + N+
Sbjct: 231 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNH 289
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSL---------EKTDGRVILAEFETFYLLNT 174
+ SLAD +Y+G + ++K Q + ++L +GRVILAEFE F +L T
Sbjct: 290 SLLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTT 349
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHE 221
Y+PNNG + SF+RRR WD+R+ +FV QCS KPL+W GDLN + E
Sbjct: 350 YSPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPE 407
Query: 222 EIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+ID+S P+ F + +G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH
Sbjct: 408 DIDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHP 465
Query: 279 EKDM----DCGFSWSGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 330
+ +SW G RG MR+D+ +++E L + + G G
Sbjct: 466 RTEPPPLESAEYSWRGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKAN 525
Query: 331 FYGSDHCPVSLELSE 345
F+GSDHCPV + E
Sbjct: 526 FFGSDHCPVLVRFKE 540
>gi|83314890|ref|XP_730557.1| AP endonuclease-related [Plasmodium yoelii yoelii 17XNL]
gi|23490314|gb|EAA22122.1| putative AP endonuclease-related [Plasmodium yoelii yoelii]
Length = 554
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 136/350 (38%), Positives = 192/350 (54%), Gaps = 54/350 (15%)
Query: 44 FVTWNANSLLLRVKN--NWPEFSNFITTFDPDVIALQEVRMPAA-----GSKDAPKN--H 94
VTWN NS+ +R KN W F F+ + DV+ QEVR+PA G K+ KN
Sbjct: 211 IVTWNMNSITVRYKNREKWKRFIKFVNEINADVLCFQEVRLPALNVPKNGVKNGVKNGVK 270
Query: 95 QELKDDTKASREEK---LI------------LMRALSSPPFKNYQIWWSLADSKYAGTAL 139
+K++ K EE+ L+ ++ + FK Y ++SLA+ KY+G +
Sbjct: 271 NGVKNEVKNEDEERERGLVKNTDQKSMIDYKIVEDILKNDFKEYNSYFSLANIKYSGQLV 330
Query: 140 LVKKCFQPKKVSFSL--------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 191
LVKK + K V ++L +GR+IL EF FYLL+TY+PNNG+ ++ F RR
Sbjct: 331 LVKKDIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DQIKFNRR 388
Query: 192 RKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 249
+ +D++++ FVL + K LIW GDLN++ E+ID+SHP F K G VP KE GQ
Sbjct: 389 KLYDEQMKNFVLFMKNENKNLIWTGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYIGQ 445
Query: 250 PGFTIAERKRFGAILKEGRLIDAYRFLH------------KEKDMDCGFSWSGNP--IGK 295
PG T AER+ F ILK G L+D+YR+ K D ++W P IGK
Sbjct: 446 PGCTDAERENFKTILKNGNLVDSYRYFENYKIKNDPTYKKKTNINDNIYTWRC-PFLIGK 504
Query: 296 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 345
+ MRID+FIVS+ L ++I E+ G+ + FYGSDHCPV L + E
Sbjct: 505 SCNRAMRIDHFIVSKNLLNQIENVEIHGYSVSHTNFYGSDHCPVILNMKE 554
>gi|310893421|gb|ADP37706.1| AP endonuclease ExoIII [Toxoplasma gondii]
Length = 513
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 135/362 (37%), Positives = 197/362 (54%), Gaps = 41/362 (11%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 68 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 127
Query: 70 FDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRALSSPPFKNY 123
DPD++ LQEV++ A G A P++H +KD K S E L AL + N+
Sbjct: 128 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNH 186
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSL---------EKTDGRVILAEFETFYLLNT 174
+ SLAD +Y+G + ++K Q + ++L +GRVILAEFE F +L T
Sbjct: 187 SLLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTT 246
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 234
Y+PNNG + SF+RRR WD+R+ +FV Q KPL+W GDLN + E+ID+S P+ F +
Sbjct: 247 YSPNNGATPK--SFERRRLWDERMLQFVTQLK-KPLVWVGDLNCAPEDIDLSDPDQFRSV 303
Query: 235 ---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD----MDCGFS 287
+G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH + +S
Sbjct: 304 IHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHPRTEPPPLESAEYS 361
Query: 288 WSGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
W G RG MR+D+ +++E L + + G G F+GSDHCPV +
Sbjct: 362 WRGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKANFFGSDHCPVLVRF 421
Query: 344 SE 345
E
Sbjct: 422 KE 423
>gi|237843341|ref|XP_002370968.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|211968632|gb|EEB03828.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|221502330|gb|EEE28063.1| ap endonuclease, putative [Toxoplasma gondii VEG]
Length = 630
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 197/369 (53%), Gaps = 53/369 (14%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 171 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 230
Query: 70 FDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRALSSPPFKNY 123
DPD++ LQEV++ A G A P++H +KD K S E L AL + N+
Sbjct: 231 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNH 289
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSL---------EKTDGRVILAEFETFYLLNT 174
+ SLAD +Y+G + ++K Q + ++L +GRVILAEFE F +L T
Sbjct: 290 SLLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTT 349
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHE 221
Y+PNNG + SF+RRR WD+R+ +FV QCS KPL+W GDLN + E
Sbjct: 350 YSPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPE 407
Query: 222 EIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+ID+S P+ F + +G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH
Sbjct: 408 DIDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHP 465
Query: 279 EKDM----DCGFSWSGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 330
+ +SW G RG MR+D+ +++E L + + G G
Sbjct: 466 RTEPPPLESAEYSWRGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKAN 525
Query: 331 FYGSDHCPV 339
F+GSDHCPV
Sbjct: 526 FFGSDHCPV 534
>gi|68063675|ref|XP_673834.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium berghei strain ANKA]
gi|68070845|ref|XP_677336.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491972|emb|CAI02361.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium berghei]
gi|56497413|emb|CAH98029.1| hypothetical protein PB000718.02.0 [Plasmodium berghei]
Length = 346
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 135/349 (38%), Positives = 191/349 (54%), Gaps = 49/349 (14%)
Query: 38 KKDPLKFVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN- 93
+K+ VTWN NS+ +R KN W F F+ + DV+ QEVR+PA SK+ KN
Sbjct: 2 RKNVNVIVTWNMNSITVRYKNKEKWKRFMKFVNEINADVLCFQEVRLPALNISKNESKNV 61
Query: 94 ------------HQELKDDTKASREEKLI---LMRALSSPPFKNYQIWWSLADSKYAGTA 138
+ + K + ++ LI ++ + FK Y ++SLA+ KY+G
Sbjct: 62 NNKVYGGKKNEGEERNRGSVKNTDQKSLIDYKIVEEILKNDFKEYNGYFSLANIKYSGQL 121
Query: 139 LLVKKCFQPKKVSFSL--------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 190
+LVKK + K V ++L +GR+IL EF FYLL+TY+PNNG+ ++ F+R
Sbjct: 122 VLVKKSIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DQTKFKR 179
Query: 191 RRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 248
R +D +++EFVL + K LIW GDLN++ E++D+SHP F K G VP KE G
Sbjct: 180 RSLFDNQMKEFVLFMKNENKNLIWTGDLNIAPEDVDLSHPIEFRKMK-KGNVP--KEYIG 236
Query: 249 QPGFTIAERKRFGAILKEGRLIDAYRFL------------HKEKDMDCGFSWSGNP--IG 294
QPG T AER F ILK G LID+YR+ K D ++W P IG
Sbjct: 237 QPGCTDAERANFKTILKNGDLIDSYRYFENYKIKNDPTYKRKTNINDNIYTWRC-PFLIG 295
Query: 295 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
K + MRID+FIVS+ L ++I E+ G+ + FYGSDHCPV L +
Sbjct: 296 KSCNRAMRIDHFIVSKNLLNQIENIEIHGYSVFHTNFYGSDHCPVILNM 344
>gi|298710453|emb|CBJ25517.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 411
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 183/351 (52%), Gaps = 57/351 (16%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ----- 95
P VT+N N R+ NW E F+ PD++ QEVR+PA G A K
Sbjct: 68 PRTIVTFNLNGASPRLAKNWNEIKGFLEEHKPDLVCFQEVRLPAKGVPKAKKEDDTGRKR 127
Query: 96 -ELKDDTKASREEKLILMRALSSPPFK-NYQIWWSLADSKYAGTALLVKK-----CFQPK 148
+LKDDT A R++ ++ R L + + Y++ SLA+SKYAGTA L+ P
Sbjct: 128 WQLKDDTAADRKDIALVDRTLRALARRLGYRLVMSLANSKYAGTAALISTWGAVFAITPV 187
Query: 149 KVSFS----LEKTD---------------GRVILAEFETFYLLNTYAPNNGWKEEENSFQ 189
++F+ L D GRVI E+ + +L Y PNNG K E SFQ
Sbjct: 188 TIAFAGRLGLSALDLPEPLGKLFKEHDREGRVIAIEYPSVTVLALYVPNNGSKAE--SFQ 245
Query: 190 RRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP-PNKEDWG 248
RRR+WD + FV + SGK LI GDLNV+HE+ D++H FF G P N ED G
Sbjct: 246 RRRRWDDELCGFVDKYSGK-LIITGDLNVAHEDADLTHASFF-----KGMFPAANPEDSG 299
Query: 249 QPGFTIAERKRFGAILKE-GRLIDAYRFLH---------KEKDMDCGFSWSGN------P 292
QPG T AE++R +L G L+DAYR L+ +M+ G +W G
Sbjct: 300 QPGCTPAEKRRHSRLLASGGGLVDAYRRLNPVPAAGAGGARTEME-GMTWRGTAGNQVAA 358
Query: 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+G+Y GK MRIDYF++S L RI ++ G G + +GF GSDHCP+ L L
Sbjct: 359 MGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDHCPLMLTL 409
>gi|221055699|ref|XP_002258988.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium knowlesi strain H]
gi|193809058|emb|CAQ39761.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium knowlesi strain H]
Length = 516
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 182/337 (54%), Gaps = 44/337 (13%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQ 95
VTWN NS+ +R KN W F +F + DV+ QEVR+PA +KD ++
Sbjct: 184 IVTWNMNSITVRYKNKEKWNAFMSFFNRINADVLCFQEVRLPALNLYDAKEAKDGERDRG 243
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL- 154
++K+ + S+ + +M + F NY ++SLA+ KY+G +LVK+ K + ++L
Sbjct: 244 KVKNTDQKSQVD-FDIMEKILKEDFHNYNAYFSLANIKYSGQLVLVKRSIPIKSIRYNLS 302
Query: 155 -------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 205
+GRVI+ EF FYLL+TY PNNG+ E F+RRR +D++++EFV L+
Sbjct: 303 FDLDPREHHHEGRVIIVEFSKFYLLSTYTPNNGF--EPVKFERRRLFDEKLKEFVSVLRN 360
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
K L+W GDLN++ E+ D+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 361 KKKNLVWTGDLNIAPEDTDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFRGILS 417
Query: 266 EGRLIDAYRFL--------------HKEKDMDCG---FSWSGNP--IGKYRGKRMRIDYF 306
G LID+YR L H D ++W P +GK K MRID+F
Sbjct: 418 AGDLIDSYRHLANLRANKGEPGKATHNRAVSDINDNIYTWRC-PFLMGKSCNKAMRIDHF 476
Query: 307 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
IVS + + E+ G+ + FYGSDHCPV L L
Sbjct: 477 IVSRDFMPNVENVEIHGYSVFHNNFYGSDHCPVILHL 513
>gi|195620344|gb|ACG32002.1| hypothetical protein [Zea mays]
Length = 207
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/198 (53%), Positives = 142/198 (71%), Gaps = 16/198 (8%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAE 165
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 166 FETFYLLNTYAPNNGWKE 183
FE+F L + + W E
Sbjct: 181 FESF-LFTEHLFSKQWME 197
>gi|389583540|dbj|GAB66275.1| AP endonuclease, partial [Plasmodium cynomolgi strain B]
Length = 389
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 194/375 (51%), Gaps = 54/375 (14%)
Query: 16 KPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN--NWPEFSNFITTFDPD 73
KP + + + E +++ VTWN NS+ +R KN W F +F + D
Sbjct: 3 KPQIGTATLKTNQSTQQGETKKEEEVKTIVTWNMNSITVRYKNKEKWNAFMSFFNRINAD 62
Query: 74 VIALQEVRMPAA------GSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWW 127
V+ QEVR+PA +KD ++ +K+ + S+ + +M + F NY ++
Sbjct: 63 VLCFQEVRLPAMNLDNVKNAKDGKRDRGRVKNTDQKSQVD-FEIMEQILKKDFHNYNAYF 121
Query: 128 SLADSKYAGTALLVKKCFQPKKVSFSL--------EKTDGRVILAEFETFYLLNTYAPNN 179
SLA+ KY+G +L+K+ K + ++L +GRVI+AEF F+LL+TY PNN
Sbjct: 122 SLANIKYSGQLVLIKRSIPVKSIRYNLSFDADPSEHHEEGRVIVAEFSNFFLLSTYTPNN 181
Query: 180 GWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 237
G+ + F+RRR +D++++EF VL+ K LIW GDLN++ E+ID+SHP F K
Sbjct: 182 GF--DLIKFERRRLFDEQLKEFVSVLKNKKKNLIWTGDLNIAPEDIDLSHPAEFRRMK-K 238
Query: 238 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP----- 292
G VP KE GQPG T ERK F IL G LID+YR L K + + G + G P
Sbjct: 239 GNVP--KEFVGQPGCTDFERKNFRGILSAGDLIDSYRHLAKLRG-NKGGAVKGEPAKGEP 295
Query: 293 ------------------------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 328
+GK K MRID+FIVS + + + ++ G+ +
Sbjct: 296 LKVTPGKVTGDINDNIYTWRCPFLMGKSCNKAMRIDHFIVSRDFMPNVESVDIHGYSVFH 355
Query: 329 EGFYGSDHCPVSLEL 343
FYGSDHCPV L L
Sbjct: 356 NNFYGSDHCPVILRL 370
>gi|156094081|ref|XP_001613078.1| AP endonuclease [Plasmodium vivax Sal-1]
gi|148801952|gb|EDL43351.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium vivax]
Length = 535
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 188/352 (53%), Gaps = 58/352 (16%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQ 95
VTWN NS+ +R KN W F +F + DV+ QEVR+PA SK+ ++
Sbjct: 168 IVTWNMNSITVRYKNKDKWNAFMSFFNRINADVLCFQEVRLPALNLCAVKNSKEGKRDRG 227
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL- 154
++K+ + S+ + I+ + L F NY ++SLA+ KY+G +L+K+ K + ++L
Sbjct: 228 KVKNTDQKSQVDFDIMSKILKKD-FHNYNAYFSLANIKYSGQLVLIKRNIPVKSIRYNLR 286
Query: 155 -------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 205
+GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+
Sbjct: 287 LDADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRN 344
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 345 MGKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILS 401
Query: 266 EGRLIDAYRFL-------------------HKEKDMDC-GFSWSGNP------------- 292
G L+D+YR L K C G + +G P
Sbjct: 402 AGDLVDSYRQLAGKGKAKKGEASKGETNKGETSKGGSCNGAATNGAPDINDNIYTWRCPF 461
Query: 293 -IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+GK K MRID+FIVS + + ++ G+ + + FYGSDHCPV L L
Sbjct: 462 LMGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHCPVILHL 513
>gi|14578320|gb|AAF99486.1| PV1H14200_P [Plasmodium vivax]
Length = 540
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 131/357 (36%), Positives = 188/357 (52%), Gaps = 63/357 (17%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQ 95
VTWN NS+ +R KN W F +F + DV+ QEVR+PA SK+ ++
Sbjct: 168 IVTWNMNSITVRYKNKDKWNAFMSFFNRINADVLCFQEVRLPALNLCAVKNSKEGKRDRG 227
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL- 154
++K+ + S+ + I+ + L F NY ++SLA+ KY+G +L+K+ K + ++L
Sbjct: 228 KVKNTDQKSQVDFDIMSKILKKD-FHNYNAYFSLANIKYSGQLVLIKRNIPVKSIRYNLR 286
Query: 155 -------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 205
+GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+
Sbjct: 287 LDADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRN 344
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 345 MGKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILS 401
Query: 266 EGRLIDAYRFL-------------------HKEKDMDC------GFSWSGNP-------- 292
G L+D+YR L K C G + +G P
Sbjct: 402 AGDLVDSYRQLAGKGKAKKGEASKGETNKGETSKGGSCNGGSCNGAATNGAPDINDNIYT 461
Query: 293 ------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+GK K MRID+FIVS + + ++ G+ + + FYGSDHCPV L L
Sbjct: 462 WRCPFLMGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHCPVILHL 518
>gi|428171338|gb|EKX40256.1| hypothetical protein GUITHDRAFT_75737 [Guillardia theta CCMP2712]
Length = 304
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 171/291 (58%), Gaps = 40/291 (13%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKN--NWPEFSNFITTFDPDVIALQEVRMPAA---G 86
+S +S + P F++WNANSL+ R K N F + + +PDVIALQEVRM A+ G
Sbjct: 31 TSSASSGRLPRSFLSWNANSLVNRCKEEENMRGFCDLVLKLEPDVIALQEVRMVASAPPG 90
Query: 87 SKDA---PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK 143
SK ++ +D+ K +EE ++ AL P NY + WSLAD +YAGTAL+++K
Sbjct: 91 SKRGDGRKRDRGSPRDNEKECKEELELVASALRKEPLSNYVVRWSLADWRYAGTALMIRK 150
Query: 144 CFQPKKVSFSL-------EKTDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRR 191
+ K VSF +GRV +A+F + ++NTYAPNNGWKEE N F +R
Sbjct: 151 GIR-KPVSFHYNLDLGQEHDENGRVCMAKFVKDDGKELLVVNTYAPNNGWKEESN-FAKR 208
Query: 192 RKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 249
R+WD R+ FV C G + W GD+NV+H++ DV+HP+FF + D GQ
Sbjct: 209 REWDTRLLSFVRTCRERGMEVAWVGDMNVAHKDCDVTHPDFF------------RGDAGQ 256
Query: 250 PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 300
PGFT E++RF +L+EG L+DA+R LH ++ F+ S +P +RG+R
Sbjct: 257 PGFTANEQERFSQVLEEGSLVDAFRLLHSPEE----FTSSDDPAWTWRGQR 303
>gi|194699264|gb|ACF83716.1| unknown [Zea mays]
gi|413917520|gb|AFW57452.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 166
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 125/166 (75%), Gaps = 9/166 (5%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 157
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRT 166
>gi|294932897|ref|XP_002780496.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239890430|gb|EER12291.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 395
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 200/378 (52%), Gaps = 49/378 (12%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN-- 58
+ FFK +E + K P ++ + ET ++ + WNA+SLL R+KN
Sbjct: 7 LTDFFKKVENPKATKIPKVTVVSRVPET-------------IRLMAWNADSLLNRIKNKE 53
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
E + + D +V+ + EVRM A S + + + A R+ L++
Sbjct: 54 TAKEIAKVVKDHDVNVLCVCEVRM-ACESCSSTGAIDRVNSNQGAERD--LVVNFLTRQC 110
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD----------GRVILAEF-- 166
F Q+++SL + K AG + ++K +P +V F + T+ GR+ILA+F
Sbjct: 111 GFD--QLYFSLRNIKQAGVGMFMRKMPKPDRVHFKIPGTEVGGDGFHHPEGRIILADFAS 168
Query: 167 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEID 224
E LL TY PNNGW E+ SF +RR++D ++ F+ + G+ +IW GDLNV+ D
Sbjct: 169 ENLQLLLTYVPNNGWTED--SFAKRRRFDCEVKSFLANAKSQGERIIWLGDLNVAASWND 226
Query: 225 VS-HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 283
V +P +F K + + +D GQPGFT AE+ RF +L+ G LID+YR H E+D +
Sbjct: 227 VGPNPAWFRRQKQSPGL--CDDDVGQPGFTQAEQNRFAELLEAGGLIDSYRQCHHEEDWE 284
Query: 284 CGFSWSGNP--------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+W G P G++ GK MRIDY +V E +KD I++ E G G E +GF GSD
Sbjct: 285 KDATWRGAPGKPPNPPEFGRFYGKGMRIDYVLVPESMKDDILSVENLGIGKERKGFMGSD 344
Query: 336 HCPV--SLELSEASSDSE 351
H P+ ++++S+ + SE
Sbjct: 345 HAPLLAAIKVSQPAVLSE 362
>gi|401412245|ref|XP_003885570.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
gi|325119989|emb|CBZ55542.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
Length = 455
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 181/353 (51%), Gaps = 67/353 (18%)
Query: 12 CSAKKPALSPSKKDGETTETSS--------EENSKKDPLKFVTWNANSLLLRVKNN--WP 61
CS P+ P K+G+ + + +E + PL VTWN NS+ R+++ W
Sbjct: 61 CSEASPSDGPQAKEGQQRKNAEAEREREKRQEQKRTAPLSIVTWNVNSIASRIRDTRQWF 120
Query: 62 EFSNFITTFDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRAL 115
FS+F+ +PD++ LQEV++ A G A P++ +K+ K S E + AL
Sbjct: 121 YFSSFLQKVNPDILCLQEVKLAAHGPPGAKRGDGMPRDRSRIKESDKVSSVEAREIREAL 180
Query: 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGRVILAEFETFYLLNTY 175
++ ++++ SLAD +Y+G + ++ + +GR+ILAEF F +L TY
Sbjct: 181 NTL-LPDHKLLISLADWRYSGQMMFIRN-----------DLPEGRIILAEFSPFCVLTTY 228
Query: 176 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA- 234
+PNNG + SF+RRR WD+R+ EFV Q KPL+W GDLN + E+ID+S PE F +
Sbjct: 229 SPNNGGTPK--SFERRRLWDERMLEFVTQLK-KPLVWVGDLNCAPEDIDLSDPEQFRSVI 285
Query: 235 --KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 292
+G + P+ + GQ G T AER+RF AIL+ G D L DC F SG P
Sbjct: 286 HESADGTIDPD--NIGQAGCTDAERRRFRAILERG--WDQCMCLK-----DC-FGGSG-P 334
Query: 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 345
G RG MR+D+ + F+GSDHCPV + E
Sbjct: 335 RGMLRGLGMRLDH----------------------IANFFGSDHCPVLVRFKE 365
>gi|303282399|ref|XP_003060491.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457962|gb|EEH55260.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 514
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 140/304 (46%), Gaps = 81/304 (26%)
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT--------DGRVILAEFETFY 170
P Y+ W+ AD + AG +LVKK K S SL + +GRV+ EFE
Sbjct: 5 PMSRYEPHWACADKRSAGCGVLVKKHIPVKSASRSLTRRAGEASQHPEGRVLFLEFENVT 64
Query: 171 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----------------CSG------- 207
LLN YA NNGWK E S +RR+WD ++ F+ C+
Sbjct: 65 LLNVYAQNNGWKPE--SMAKRRRWDAELKTFLTNDDDDDDDDDDDDDAQLCAASKDATTS 122
Query: 208 -------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY--- 239
KP++W GDLN H E DV+HPEFFA K G
Sbjct: 123 NDATSKTNASSLRPRRPTRADGKGLKPIVWTGDLNACHTERDVTHPEFFALQKPEGKKGA 182
Query: 240 ----VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP--- 292
PP+ +D GQPGFT ER+RF I+ +L+D YR LH + C +W G+P
Sbjct: 183 PPPETPPDVDDRGQPGFTNNERRRFHDIVTSAKLVDVYRHLHGDARRAC--TWYGHPGVV 240
Query: 293 -IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG-----IELE-----GFYGSDHCPVSL 341
G+Y+G+ MR+DYF VS+ L+ + C LE F+GSDHC V L
Sbjct: 241 ATGRYKGRGMRLDYFFVSDGLERAAVECAQATDAYSDKPAALEQRPDDAFFGSDHCGVYL 300
Query: 342 ELSE 345
+L +
Sbjct: 301 KLKD 304
>gi|145351399|ref|XP_001420068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580301|gb|ABO98361.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 172/350 (49%), Gaps = 55/350 (15%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNN----------WPEFSNFITTFDPDVIALQ 78
TE + E++ +PL F +WNAN LL R+++ S + PDVIALQ
Sbjct: 2 TEAFTVEDAS-EPLSFASWNANGLLNRIRDKSDPNGRRTRALLALSENVMRKRPDVIALQ 60
Query: 79 EV--RMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAG 136
EV + G +H ++ + K R+EK + + PFKNY ++ LA+++ AG
Sbjct: 61 EVWLKCEEMGKGTGKWDHAKMGAEDKKLRDEKAFIEALMGRRPFKNYDAYYCLANARRAG 120
Query: 137 TALLVKKCF-QPKKVSFSL------------EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+VKKC +P +V+ +L + +GRV++ E+E +LNTY P+NG
Sbjct: 121 VITMVKKCLAKPIRVARTLALDGRDVTPDEIDTNEGRVLMLEYEKMIVLNTYVPHNGSNA 180
Query: 184 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYVP 241
E +++R WD R+Q F+ GK ++W GDLNV+H++ DV P F
Sbjct: 181 ER--YEKRALWDFRVQRFLENYRGKKDVVWMGDLNVAHQDHDVGPSPRLFE--------- 229
Query: 242 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 301
G GFT+ ER+RF IL ++D YR + ++ S G + ++G M
Sbjct: 230 ------GVGGFTLPERRRFTDILAATDMVDTYRAFNGDRLTYTWRSTRGQGLDGWQG--M 281
Query: 302 RIDYFIVSEELKDRIIACEMQ--------GHGIELEGFYGSDHCPVSLEL 343
R+DYF+V +L RI +CE + + F SDHC + L L
Sbjct: 282 RLDYFVVPRKLVARIKSCETSTDRFDDTTAQSMPMSCFMDSDHCMIHLSL 331
>gi|323450905|gb|EGB06784.1| hypothetical protein AURANDRAFT_71945 [Aureococcus anophagefferens]
Length = 1309
Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 61/367 (16%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPA---AGSKD---AP 91
+ DP + WN +L R N E +F+ DV+ L EV++ A G+K AP
Sbjct: 24 RGDPRTIICWNVENLKSRATQNRREVRDFLGACGADVVFLSEVKLAAHCDKGAKKGDGAP 83
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK-CFQPKKV 150
+N + + D ++K+ L PF +SLAD +YAGT L++ P++V
Sbjct: 84 RNRRRVNDKF---HDDKVQCAALLDVGPFA--APIYSLADWRYAGTCCLLRSDGPAPRRV 138
Query: 151 SFSLE-----------------KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 193
SFSLE DGRVI+ E+ET +L+TY+PNNG + SF+RRR
Sbjct: 139 SFSLEPPDAPPARNSVAFADDHDPDGRVIVLEYETLVVLHTYSPNNG--NDAKSFERRRL 196
Query: 194 WDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK------- 244
W+ +++ F ++ G+ L++ GDLN + + D+SHP +F A N P K
Sbjct: 197 WEAKVRAFAEAVRVRGRSLVYVGDLNCAPTDDDLSHPAWFRAWNSN---QPGKRLGKDRE 253
Query: 245 ----EDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG-----FSWSGNP--- 292
+D GQPG T E + F A+L+ G L DA+R FSW G P
Sbjct: 254 RLEADDEGQPGCTPRESRYFDALLRAGGLFDAFRDARGAGAGAATIEGPHFSWRGPPGRD 313
Query: 293 ----IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 348
G+Y GK MRID+ +VS + + +C++ G G+ +GF GSDHCP+ L L +++
Sbjct: 314 GLPETGRYYGKGMRIDHALVSTGVA--VESCDLLGRGVGRDGFMGSDHCPLRLVLRGSAA 371
Query: 349 DSEKREK 355
E+
Sbjct: 372 PGADDER 378
>gi|308808326|ref|XP_003081473.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
gi|116059936|emb|CAL55995.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
Length = 447
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 186/409 (45%), Gaps = 93/409 (22%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNN-------WP 61
EK S A + + G T E + E PL F WNA+ L ++K +
Sbjct: 33 EKTRSIDHGARAMDRAPGTTVEDAVE------PLSFFCWNADGLTRKLKRDDGRPSRAAM 86
Query: 62 EFSNFITTFDPDVIALQEV--------------------------RMPAAGSK------- 88
I PDVIALQEV R G +
Sbjct: 87 ALREAIAKRAPDVIALQEVWLKAAGGGKEGAGTRCGRDEWRTRDERASDDGKRGRLTTTR 146
Query: 89 -DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCF-Q 146
++H ++ D+ K E+K ++ + L PF+ Y + LA +K GT +LVKK +
Sbjct: 147 VTMGRDHTKMSDEGKVYAEDKAVMEKMLGGYPFREYDAHFCLAGAKRYGTCVLVKKALKK 206
Query: 147 PKKV--SFSLEKTD----------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 194
P +V + +L+ TD GRV+L E+E +LNTY P+NG E +++R W
Sbjct: 207 PIRVARTLALDGTDASPDDIDTNEGRVLLLEYEKVIVLNTYVPHNGGNPER--WEKRAMW 264
Query: 195 DKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYVPPNKEDWGQPGF 252
D R++ F+ GK +IW GDLN +H ++DV+ PE F G GF
Sbjct: 265 DFRVKRFLTHYKGKKDVIWLGDLNCAHRDLDVAPSPEQFI---------------GVGGF 309
Query: 253 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 312
T+ ER+RF IL ++DAYR LH ++ F+W G IG G MR+DYFIV
Sbjct: 310 TVPERQRFTDILSTSDMVDAYRALHGDRQT---FTWRG--IGMGSGLAMRLDYFIVPRTF 364
Query: 313 KDRIIACEMQGHGIE--------LEGFYGSDHCPVSLELSEA-SSDSEK 352
R+ +CE + + F+GSDHC + L L + +SD+EK
Sbjct: 365 VHRLKSCETSTDRFDDAVARERPISCFFGSDHCALYLTLHKRDASDAEK 413
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 150/310 (48%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ D D+ LQE+++ + P+
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFIEYLEETDTDIFCLQEIKLQSGQVDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+L KK +P V++ L
Sbjct: 51 ---------------------YYVYWNYAVKKGYSGTAILTKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GR+I EFE FY+L Y PN K R KW++ I ++ + K P+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMLTLYTPNA--KRGLERLDYRMKWEEDILSYITKLDKKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ERKRF IL EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KTNRKNPGFSDQERKRFTQILDEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW + R K + R+DYFIVSE LKD+I+ ++ + G
Sbjct: 190 LY--PDREGAYSWWSYRMNA-RAKNIGWRLDYFIVSERLKDKIVDAKINSEVM------G 240
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 241 SDHCPVELNM 250
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 153/308 (49%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F +F D D+ +QE ++
Sbjct: 1 MKIVSWNVNGIRACVKKG---FMDFFKDVDADIFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+E ++ L +NY +W+ A+ K Y+GTA+ K+ +P VS+ + + D
Sbjct: 39 ---QEGQIQL-------DLENYHQYWNYAERKGYSGTAVFTKQ--EPLSVSYGIGEDDDE 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
GR I EFE FYLLN Y PN+ K + + + R W++R++ ++ + KP+I+CGD
Sbjct: 87 PEGRCITLEFEDFYLLNVYTPNS--KRDLSRLEDRLHWEERVRAYIKELDEIKPVIYCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + G GFT ER++ +L EG +D++R
Sbjct: 145 LNVAHNEIDLRNP---------------KSNHGNSGFTTEEREKMSTLLNEG-FVDSFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ EKD + WS + R RIDYFIVS+ LKD + M + GSD
Sbjct: 189 LYPEKDQSYTW-WSYMSKVRERNIGWRIDYFIVSDRLKDSLKDAGMHTDVL------GSD 241
Query: 336 HCPVSLEL 343
HCPV +E+
Sbjct: 242 HCPVYIEI 249
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 151/312 (48%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ +PD+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+E ILM + + Y +W+ A+ K Y+GTA+ K F+P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--FKPLSVHYGLEENGEP 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I CGDL
Sbjct: 88 EGRTITLEFERFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRNYLQQLDASKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K ++G GFT ER+R +L G ID +R
Sbjct: 146 NVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAG-FIDTFRHF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS P + R RIDYF+VS+ L+ +I + H GSDH
Sbjct: 190 YPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCH------ITGSDH 242
Query: 337 CPVSLELSEASS 348
CPV L++ + S+
Sbjct: 243 CPVILDMQDISA 254
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 148/312 (47%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+ +
Sbjct: 39 ----QEGQILMENM-----EEYAQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENEEP 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q KP+I CGDL
Sbjct: 88 EGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDAQKPVIICGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K ++G GFT ER R +L G ID +R+
Sbjct: 146 NVAHQEIDLKNA---------------KANYGNAGFTPEERDRMSQLLNAG-FIDTFRYF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS P + R RIDYF+VSE L+ ++ + H GSDH
Sbjct: 190 YPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCH------ITGSDH 242
Query: 337 CPVSLELSEASS 348
CPV L+L + S+
Sbjct: 243 CPVILDLQDISA 254
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta]
Length = 307
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/344 (31%), Positives = 168/344 (48%), Gaps = 71/344 (20%)
Query: 15 KKPALSPSKK----DGETTETSSE---ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFI 67
KK A +PSK+ D + SSE ++ KK LKF +WN N + V+ N +++
Sbjct: 20 KKLARTPSKRESIPDVSGNDYSSEAATKDGKKWNLKFSSWNVNGIRAWVEKN---GHSYV 76
Query: 68 TTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWW 127
T DPD+ +QE + +KD + DD + Y +W
Sbjct: 77 TAEDPDIFCVQETKC----AKDL------IPDDAN-----------------IEGYHAYW 109
Query: 128 SLAD-SKYAGTALLVKKCFQPKKVSFSLEK----TDGRVILAEFETFYLLNTYAPNNGWK 182
D Y+GT L K+ +P V++ ++K +GRVI AEF+ FY + Y PN G
Sbjct: 110 LSGDKDGYSGTGLYSKQ--EPLSVTYGIDKEEHDKEGRVITAEFDKFYFVTAYVPNAGRG 167
Query: 183 EEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 241
S+ R KWD +E++ K P++ CGDLNV+H+EID+++P
Sbjct: 168 LPRLSY-RSEKWDPDFREYLKNLDAKKPVVMCGDLNVAHKEIDIANP------------- 213
Query: 242 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGNPIGKYRGKR 300
K + GFT ER+ F +L+ G +DA+R L+ E+ + ++ GN GK G
Sbjct: 214 --KSNKKSAGFTPQERQGFSELLEAG-FVDAFRELYPEETKKYSYWTYMGNARGKNVG-- 268
Query: 301 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DYF+VSE++KD I ++ GSDHCPV L ++
Sbjct: 269 WRLDYFVVSEKIKDGICDSLIRSE------VMGSDHCPVVLLMN 306
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 151/310 (48%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAVVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ KK +P V + L
Sbjct: 45 -------------LDLPGYKDY---WNYAVKKGYSGTAIFTKK--EPLSVQYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I +V + KP+I CGD
Sbjct: 87 TEGRVITLEFENFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L+ G +D++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + R RIDYF+VSE LKD ++ ++ + GS
Sbjct: 189 FY--PDLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 153/311 (49%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + EF ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--EFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+ Y +W+ A K Y+GTA+ KK +P V++ L+
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F +IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSSILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 150/312 (48%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ +PD+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENGEP 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I CGDL
Sbjct: 88 EGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIICGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K ++G GFT ER+R +L G ID +R
Sbjct: 146 NVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAG-FIDTFRHF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ + WS P + R RIDYF+VS+ L+ +I + H GSDH
Sbjct: 190 YPDRTEVYSW-WSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCH------ITGSDH 242
Query: 337 CPVSLELSEASS 348
CPV L++ + S+
Sbjct: 243 CPVILDMQDISA 254
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 161/334 (48%), Gaps = 63/334 (18%)
Query: 17 PALSPSKKDGETTETSSEENSKKDP---LKFVTWNANSLLLRVKNNWPEFSNFITTFDPD 73
P LS S D + + SS+ +K KF +WN N + +K + E+ N PD
Sbjct: 89 PILSKSVTDYSSIDLSSDAKNKDGSPWTHKFSSWNVNGVRAWLKASGIEYVNQEC---PD 145
Query: 74 VIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK 133
V +QE + KD PK+ E+ Y +W+ A+ K
Sbjct: 146 VFCIQETK---CSEKDLPKSELEVP-----------------------GYHSYWNSAEQK 179
Query: 134 -YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSF 188
Y+GT L K+ +P V++ + +GRVI AEFE FY + Y PN G K + S+
Sbjct: 180 GYSGTGLYSKE--EPINVTYGIGIPKHDNEGRVITAEFEKFYFVTAYIPNAGDKLKRLSY 237
Query: 189 QRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 247
R +WD ++++ KP++ CGDLNV+H+EID+++P K +
Sbjct: 238 -RVGEWDPDFKKYLKSLDENKPVVLCGDLNVAHKEIDIANP---------------KTNQ 281
Query: 248 GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFI 307
GFT ER+ F ++L++ +LID++R L+ +K + WS + K R+DYF+
Sbjct: 282 RSAGFTKEERESFSSLLEDNKLIDSFRDLYPDKKEAYSY-WSYRSNARKNNKGWRLDYFL 340
Query: 308 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 341
VSE LK + C+ I YGSDHCP+ L
Sbjct: 341 VSERLKAAV--CD----SIIRSQVYGSDHCPIVL 368
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 142/308 (46%), Gaps = 61/308 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK V+WN N + +KN E +I + D+ +QE + P
Sbjct: 65 LKLVSWNVNGIRAVIKNGGME---YIKKENADIFCIQETKCP------------------ 103
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKT--- 157
L + S +YQ +WS AD + YAGTAL K PKKV++ + +
Sbjct: 104 ---------LHKIPSEAKLPSYQSFWSSADKAGYAGTALFSK--IAPKKVTYGIGRKVHD 152
Query: 158 -DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI AEF+ FYL+ Y PN G + R ++WD E++ + + KP+I CGD
Sbjct: 153 EEGRVITAEFDRFYLVTAYVPNAGQGLARLPY-REKEWDPDFLEYLRKLDATKPVIVCGD 211
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID++ P+ + GFT ER F +L LID YR
Sbjct: 212 LNVAHEEIDLARPD---------------TNHKTAGFTDQERSGFTKLLSSANLIDTYRH 256
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ F WS + R+DYF+VS+ + + E++ G GSD
Sbjct: 257 FYPDRREAYSF-WSYRTGARLINNGWRLDYFLVSQRILANVGDQEIRC------GVTGSD 309
Query: 336 HCPVSLEL 343
HCPV L L
Sbjct: 310 HCPVVLYL 317
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 150/312 (48%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ +PD+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENGEP 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I CGDL
Sbjct: 88 EGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K ++G GFT ER+R +L G ID +R
Sbjct: 146 NVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAG-FIDTFRHF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ + WS P + R RIDYF+VS+ L+ +I + H GSDH
Sbjct: 190 YPDRTEVYSW-WSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCH------ITGSDH 242
Query: 337 CPVSLELSEASS 348
CPV L++ + S+
Sbjct: 243 CPVILDMQDISA 254
>gi|452823263|gb|EME30275.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 331
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 152/310 (49%), Gaps = 59/310 (19%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103
F+TWN + VKN P F F++ PDVI LQE + L D +
Sbjct: 71 FITWNVAGMRSTVKN--PLFLGFLSKLGPDVICLQETK---------------LSDKGQV 113
Query: 104 SREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKT----D 158
S E + ++LS + + IW A Y+GTA+ ++ +P V + L++ +
Sbjct: 114 SEE----VTQSLSD---QYHDIWNHCTARKGYSGTAIFTRE--EPLSVLYGLQEEKHNEE 164
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLN 217
GRVI E+E ++L+N Y PN G ++ R W+K + +++ + K P+I+ GDLN
Sbjct: 165 GRVITLEYEKYFLVNAYVPNAGEGLRRLNY-RIDSWEKDMCQYLCGLNQKKPVIYTGDLN 223
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+ Y P E GFT ER++F +L+ G +DA+R+L+
Sbjct: 224 VAHQEIDI-------------YQPKGHEK--HAGFTPQERQKFTDLLQCG-FVDAFRYLY 267
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ F+ WS K R R+DYF+ SE L I+ CEM E Y SDH
Sbjct: 268 PHRQ---SFTYWSKRAKAKERNHGWRLDYFVTSERLVPCILECEM------FENIYISDH 318
Query: 337 CPVSLELSEA 346
CP+ L L A
Sbjct: 319 CPLMLHLDIA 328
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 144/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F + D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGVPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE FY++ Y PN+ + E R ++ I E+V KP++ CGD
Sbjct: 87 TEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYF+VSE LKD+++ ++ + GS
Sbjct: 189 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 151/310 (48%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ KK +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTKK--EPLSVQYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++ CGD
Sbjct: 87 TEGRVITLEFEKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L+ G +D++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + R RIDYF+VSE LKD ++ ++ + GS
Sbjct: 189 FY--PDLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ K+ +P V++ L
Sbjct: 47 NV-----------------EGYYTYWNYAVKKGYSGTAIFSKE--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I A ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 148/312 (47%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+ +
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENEEP 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q KP+I CGDL
Sbjct: 88 EGRTITLEFENFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDALKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K ++G GFT ER+R +L G ID +R
Sbjct: 146 NVAHQEIDLKNA---------------KANYGNAGFTPEERERMSLLLDAG-FIDTFRTF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS P + R RIDYF+VSE L+ ++ + H GSDH
Sbjct: 190 YPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCH------ITGSDH 242
Query: 337 CPVSLELSEASS 348
CPV L+L + S+
Sbjct: 243 CPVILDLQDISA 254
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 155/319 (48%), Gaps = 71/319 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + + S+F D DV LQE ++ ++
Sbjct: 4 KLISWNVNGLRAVLGKTF--LSDF-HALDADVFCLQETKLQEGQAE-------------- 46
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
LS P + Y W+ A+ K Y+GTAL K+ +P VS+ +
Sbjct: 47 ------------LSLPDYHQY---WNYAEKKGYSGTALFSKE--EPLSVSYGIGIPEHDR 89
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCS-GKPLIWC 213
+GRVI AEF Y+L Y PN+ +N QR R +W+ +E++L KP+I+C
Sbjct: 90 EGRVISAEFPDCYILTVYVPNS-----QNELQRLSYRMEWEDAFREYILSLEEKKPVIYC 144
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H+EID+ +P A+ N GFT ER +F +L G L D++
Sbjct: 145 GDLNVAHQEIDLKNP---ASNHHNA------------GFTDDERAKFSRLLDCGYL-DSF 188
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
RFLH E + D WS + R RIDYF+VSE+L++RI +G I E G
Sbjct: 189 RFLHPE-ERDAYSWWSYRTKARERNVGWRIDYFVVSEKLRERI-----RGASIHPE-IMG 241
Query: 334 SDHCPVSLELSEASSDSEK 352
SDHCPV L+L+ +E+
Sbjct: 242 SDHCPVELDLAVCPEGAER 260
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+ Y +W+ A K Y+GTA+ KK +P V++ LE
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLEIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--SDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 153/311 (49%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 NV-----------------EGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K + R KW+ + ++ + K +++CGD
Sbjct: 88 QEGRVITLEFEDFYIITLYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I A ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 147/306 (48%), Gaps = 65/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F + D D+ LQE +
Sbjct: 1 MKLISWNVNGIRACVEKG---FLDFFKSVDADIFCLQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L + + Y+ +W+ A+ K Y+GTA+ K+ +P S+ L
Sbjct: 38 ---------LQQGQIDLDLEGYEQYWNYAEKKGYSGTAVFTKE--KPLSASYGLNIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E++ FYL+ Y PN+ KEE + R +W+ + ++ + KP+I CGD
Sbjct: 87 KEGRVITLEYDDFYLVTVYTPNS--KEELARLEYRMEWEDAFRAYLKKLEKNKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER +F +L G ID YR+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNPGFSDEERAKFSELLASG-FIDTYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ + WS + + RIDYF++SEELKD++++ E+ + GSD
Sbjct: 189 FYPDKEGAYSW-WSYRFNARTKNAGWRIDYFVISEELKDKLVSAEIHNEIL------GSD 241
Query: 336 HCPVSL 341
HCPV L
Sbjct: 242 HCPVEL 247
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKVQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+ Y +W+ A K Y+GTA+ KK +P V++ LE
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLEIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--SDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 144/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F + D D+ LQE ++ +
Sbjct: 6 MKLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIE------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V + L
Sbjct: 50 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGVPEHD 91
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE FY++ Y PN+ + E R ++ I E+V KP++ CGD
Sbjct: 92 TEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGD 149
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 150 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 193
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYF+VSE LKD+++ ++ + GS
Sbjct: 194 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GS 245
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 246 DHCPVELELN 255
>gi|325182155|emb|CCA16608.1| exodeoxyribonuclease putative [Albugo laibachii Nc14]
Length = 375
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 164/356 (46%), Gaps = 72/356 (20%)
Query: 1 MKRFFKPIEKECSAKKPALSPS-KKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNN 59
+K+ +PI + A + PS D ET S LK + WN N L +K +
Sbjct: 79 LKKTQQPISSDMKAYCEQIRPSFGLDAETLPAES--------LKIIAWNVNGLRALLKYD 130
Query: 60 WPE-FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
F ++ D D+I L E ++ D + + E L L
Sbjct: 131 ESRYFHAYVREEDADIICLSETKI----------------DSPQVEKMEDL-----LPKY 169
Query: 119 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE-----KTDGRVILAEFETFYLL 172
PF+ +WS A K YAGTA+ K +P +V L+ T+GR + EFE F+L+
Sbjct: 170 PFQ----YWSCAHKKGYAGTAVCSK--LEPLQVRSHLDDSTLGSTEGRFLALEFEKFWLV 223
Query: 173 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVSHP 228
+TY PN G K E R +WD + + LQ S K +IWCGDLNV+H++ID+ P
Sbjct: 224 HTYVPNAGMKLERLG-DRTTQWDAVLLQ-TLQSLEKESEKGVIWCGDLNVAHQDIDIHDP 281
Query: 229 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 288
+ N + PGFT AER FG LK G +D +R H EK +S+
Sbjct: 282 K-------------NNRN-KSPGFTDAERNNFGETLKTG-FVDTFRHFHPEKQQFTYWSY 326
Query: 289 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
N + R K R+DYF+VSE L ++ A ++ EG GSDH PV LS
Sbjct: 327 RFN--ARTRNKGWRLDYFVVSERLMAQVKASFVR------EGVKGSDHVPVGAILS 374
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 146/308 (47%), Gaps = 64/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F + T D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRASVTKG---FEDIFKTLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
F+ Y+ +W+ AD K Y+GTA+ K + +++ D
Sbjct: 47 ------------------FEGYESYWNYADKKGYSGTAIYTKHSPLSVQYGIGIDQHDHE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLN 217
GRV+ EFE FYL+ Y PN+ ++E R +W++ Q ++++ + KP++ CGD+N
Sbjct: 89 GRVVTLEFEQFYLVTVYTPNS--QDELKRLDYRMEWERDFQAYLVKLDASKPVVVCGDMN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+ +P K + GFT ER++ +L G ID +R+L+
Sbjct: 147 VAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTNLLDNG-FIDTFRYLY 190
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
E + +S WS + + RIDYF++SE LK + ++ +GSDH
Sbjct: 191 PE---EVTYSWWSYRFKAREKNTGWRIDYFLISERLKSNLTDAKIH------TDIFGSDH 241
Query: 337 CPVSLELS 344
CPV L+L+
Sbjct: 242 CPVELDLT 249
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 145/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVK---KDFEASFHHLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F+ YQ +W+ AD K Y+GTA+ K P V++ L
Sbjct: 47 ------------------FEGYQSYWNYADKKGYSGTAIYTKHT--PLNVTYGLGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E + F+L+ Y PN+ ++E R +W+ + +V+Q KP+I CGD
Sbjct: 87 HEGRVITMEMDDFFLITVYVPNS--QDELRRLDYRMQWEDDFRAYVMQLDAIKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER++ +L G +D +R
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTILLNNG-FVDTFRH 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++SE LK+R++ ++ + GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRAREKNAGWRIDYFLISERLKERLVDAKIHTEIL------GS 239
Query: 335 DHCPVSLEL 343
DHCPV LEL
Sbjct: 240 DHCPVELEL 248
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 143/309 (46%), Gaps = 67/309 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + D D+ LQE ++ +
Sbjct: 4 KLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIE-------------- 46
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
L P +K+Y W+ A K Y+GTA+ K +P V + L T
Sbjct: 47 ------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGVPEHDT 89
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI EFE FY++ Y PN+ + E R ++ I E+V KP++ CGDL
Sbjct: 90 EGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDL 147
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 148 NVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYF 191
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D+ +S WS + R RIDYF+VSE LKD+++ ++ + GSD
Sbjct: 192 Y--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSD 243
Query: 336 HCPVSLELS 344
HCPV LEL+
Sbjct: 244 HCPVELELN 252
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 151/307 (49%), Gaps = 65/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + ++ F +F+ +PD++ LQE++ ++P +L +
Sbjct: 1 MKLISWNVNGIKAILQKG---FVDFVKQENPDILCLQEIKT------NSPSQILDLSE-- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---T 157
Y+ +W+ A K Y+GTA+ K+ +PK +++ ++
Sbjct: 50 ---------------------YKQYWNTASKKGYSGTAIFTKQ--KPKNITYGMDNFPDE 86
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AE++ +YL+N Y PN+ + R KWD + E++L + KPLI+CGDL
Sbjct: 87 EGRVITAEYDNYYLVNVYTPNS--QRGLTRLDYRMKWDTKFLEYLLSLNESKPLIFCGDL 144
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P+ NK+ GFT ER F + E +D +R
Sbjct: 145 NVAHKEIDLKNPK------------TNKK---HAGFTEEERMGFDKYV-ENNFVDTFRLF 188
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+KE D +S+ N K G RIDYF S + + + + L+ YGSDH
Sbjct: 189 NKESDNYTWWSYMHNARAKNIG--WRIDYFCTSNSIVNYV------KKSVILDKIYGSDH 240
Query: 337 CPVSLEL 343
CP+ LEL
Sbjct: 241 CPIKLEL 247
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNVDIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ Q KP+++CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKQLDEKKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 145/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGIPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ CGD
Sbjct: 87 TEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYF+VSE LKD+++ ++ + GS
Sbjct: 189 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 165/354 (46%), Gaps = 75/354 (21%)
Query: 8 IEKECSAKK--PAL--SPSKKDGETTETSSEENSKKD----PLKFVTWNANSLLLRVKNN 59
+EK+ S KK P + S K E ET EE+ D PL +TWN L VK
Sbjct: 82 VEKKASPKKKVPRIKKQSSMKVDEQNETEVEESVVDDSANRPLTIITWNVAGLRALVKK- 140
Query: 60 WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119
+ FIT+ D++ LQE + + P P
Sbjct: 141 --DACRFITSDKADIVLLQETK-----CAEVPTGF------------------------P 169
Query: 120 FKNYQ--IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT------DGRVILAEFETFYL 171
K ++ + + + +AG LL K+ +P KV LE +GR+I+AE++ FYL
Sbjct: 170 VKGFKAFVGENPGKTGHAGVILLSKQ--KPIKVQTKLENVPEELGVEGRLIVAEYDKFYL 227
Query: 172 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEF 230
+N Y PN+G + +R+ WD +++ Q + K +I+ GDLNV+HEEID+++P+
Sbjct: 228 INAYVPNSG--RGLVNLAKRKIWDDFFIDYIKQLDASKAVIYAGDLNVAHEEIDLANPK- 284
Query: 231 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 290
N+ GFT ER F +L+ G +D YR LH +K F WS
Sbjct: 285 -----------TNRNKTA--GFTDQERGDFTRLLQAG-FVDVYRSLHPDKTGAYTF-WST 329
Query: 291 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+ R+DYF+VSE L D+++ CE+ GSDHCP++L+++
Sbjct: 330 MHNARATNIGWRLDYFVVSERLMDKVVKCEINSR------VMGSDHCPLTLQIN 377
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 151/310 (48%), Gaps = 62/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L ++ F ++ + D+ +QE ++ + HQ
Sbjct: 1 MKFVSWNVNGLRACLQKG---FMDYFKKVNADIFCIQETKL---------QPHQT----- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L + Y +W+ A+ K Y+GTA+ K ++P V++ +
Sbjct: 44 ------------GLEELNLEGYYAFWNFAEKKAYSGTAVFTK--YKPLSVNYGIGIPQHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E+E FYL+NTY PN+ + R +W++ + ++L+ S KP+I CGD
Sbjct: 90 NEGRVITLEYEKFYLVNTYTPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILCGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P +A + N GFT ER++ +L G ID +R+
Sbjct: 148 LNVAHKEIDIKNP---SANRRNA------------GFTDEEREKMTMLLNSG-FIDTFRY 191
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K D WS + + RIDYFIVS+ LKD +I E+ + GSD
Sbjct: 192 FYPHKK-DAYTWWSYMRNAREKNIGWRIDYFIVSQRLKDYLIDAEIHSDVM------GSD 244
Query: 336 HCPVSLELSE 345
HCPV LE+ +
Sbjct: 245 HCPVVLEIDD 254
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 144/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F + D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGVPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ CGD
Sbjct: 87 TEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYF+VSE LKD+++ ++ + GS
Sbjct: 189 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ +QE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCVQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 NV-----------------EGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K + R KW+ + ++ + K +++CGD
Sbjct: 88 QEGRVITLEFEDFYIITLYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I A ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 145/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDSDIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGVPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ CGD
Sbjct: 87 TEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYF+VSE LKD+++ ++ + GS
Sbjct: 189 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 145/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGIPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ CGD
Sbjct: 87 TEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYFIVSE LKD+++ ++ + GS
Sbjct: 189 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFIVSERLKDKLVDAKIHADVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 141/309 (45%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L VK FS++ D D+ +QE ++ A
Sbjct: 1 MRFISWNVNGLRAAVKKG---FSDYFKEADADIFCVQETKLQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ + Y +W+ A K Y+GTA+ K+ +P V + L
Sbjct: 42 ------------QIELEGLEGYHDYWNYAVKKGYSGTAVFTKE--EPLSVQYGLPEDVHN 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF FY + Y PN+ + E R +W++ + ++ KP+++CGD
Sbjct: 88 QEGRVITLEFPAFYFVTVYTPNS--QAELKRLDYRTEWEQAFADHIIALDKQKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER FG +L G +D +R+
Sbjct: 146 LNVAHQEIDLKNP---------------KTNRKNPGFSDQERAMFGQLLDNG-FVDTFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E++ D WS + R RIDYF+VS L D I + + GSD
Sbjct: 190 LYPEQE-DAYSWWSYRMNARSRNVGWRIDYFVVSSRLSDSIQEARIHAEVL------GSD 242
Query: 336 HCPVSLELS 344
HCPV LE++
Sbjct: 243 HCPVELEIA 251
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 154/310 (49%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L VK F ++ D D+ +QE ++
Sbjct: 1 MKLVSWNVNGLRACVKKG---FLDYFHEMDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E ++ L + Y +W+ A K Y+GTA+ KK +P VS+ + E+
Sbjct: 39 ---QEGQIEL-------DLEGYHQFWNYAIKKGYSGTAVFTKK--KPLSVSYGVADENEE 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GR++ EFE FYL+N Y PN+ + + R W+ RI+E+++Q + KP++ CGD
Sbjct: 87 DEGRILTLEFEDFYLINVYTPNS--QRDLARLHFRLNWEDRIREYLIQLNKLKPIVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H +ID+ + K + G GFT ER + +L G ID++R+
Sbjct: 145 LNVAHSDIDLKNA---------------KSNRGNSGFTEEERGKMTDLLNSG-FIDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ DM ++W + + R K + RIDYFIVSEELK R+ ++ H + G
Sbjct: 189 FY--PDMTDKYTW-WSYMRNVREKNIGWRIDYFIVSEELKHRLKDSQIHSHVM------G 239
Query: 334 SDHCPVSLEL 343
SDHCPV L++
Sbjct: 240 SDHCPVVLQI 249
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 145/308 (47%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK F ++ T D D+ LQE +
Sbjct: 1 MKLISWNVNGIRACVKKG---FLDYFTDIDADIFCLQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L + + Y+ +W+ A K Y+GTA+ K+ +P +V + L
Sbjct: 38 ---------LQEGQINLELEGYEQYWNYAVKKGYSGTAIFTKQ--KPIEVKYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI EFE FYL+N Y PN+ + E R KW+ +E++ KP+I CGD
Sbjct: 87 QEGRVITLEFEDFYLVNVYTPNS--QSELARLDYRMKWEDIFREYLKDLDNIKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + +L+ G D++R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERNKMTELLESG-FTDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ EK+ + WS + RIDYFIVSE++KD+I ++ + GSD
Sbjct: 189 LYPEKEGSYSW-WSYMRKARENNSGWRIDYFIVSEKMKDKIKDAQIHSN------IMGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVMLEL 249
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 145/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGIPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ CGD
Sbjct: 87 TEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYF+VSE LKD+++ ++ + GS
Sbjct: 189 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|402574713|ref|YP_006624056.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255910|gb|AFQ46185.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 251
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 147/310 (47%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN F +F + D+ LQE ++ A P N
Sbjct: 1 MKLISWNVNGIRACVKNG---FLDFFQKENADIFCLQETKVQA---DQIPFN-------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
+ Y +W+ A K Y+GTA+ KK +P K+ + + +
Sbjct: 47 ------------------LEGYYQYWNFAQKKGYSGTAIFTKK--EPMKICYGIGQEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE Y++ Y PN+ + + R KW++ +F+ KP+I+CGD
Sbjct: 87 KEGRVITLEFEKHYVVTVYTPNS--QRGLARLEYRMKWEEEFLKFIKDLEKNKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P N+++ GF++ ER +FG I+K G ID +R+
Sbjct: 145 LNVAHEEIDLKNP------------SSNRKN---AGFSMEERNKFGEIIKSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K + WS + RIDYF VSE LKDR+ A + GSD
Sbjct: 189 FYPDK-TNAYTWWSYMFNARVNNAGWRIDYFCVSEILKDRLKA------AVIYNDVMGSD 241
Query: 336 HCPVSLELSE 345
HCPV LE+ E
Sbjct: 242 HCPVGLEMEE 251
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 144/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK F + D D+ LQE ++ +
Sbjct: 1 MRLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGIPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ CGD
Sbjct: 87 TEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYF+VSE LKD+++ ++ + GS
Sbjct: 189 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 155/310 (50%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + KN E +++ DPD+ +QE + E+ DD
Sbjct: 86 IKLVSWNVNGVRAWCKN---EGHKYVSKEDPDIFTIQETKCQEG----------EVPDDV 132
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K F Y +WS A+ K YAGT L K +P V++ +
Sbjct: 133 K-----------------FDGYHSYWSYAEEKGYAGTGLYSK--VEPISVTYGIGINKHD 173
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR I AE+E FY ++TY PN G + S+ R++WDK +E++ + KP+IWCGD
Sbjct: 174 KEGRCITAEYEKFYFISTYIPNAGKGLKRLSY--RQEWDKDFREYMKKLDEKKPIIWCGD 231
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+++P+ NK+ GF+ ER+ F L+ G L+D+YR
Sbjct: 232 LNVAHQEIDLTNPK------------TNKK---TAGFSKEEREGFTKHLEIG-LVDSYRH 275
Query: 276 LHKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ EK + F ++ N GK G R+DYF++S+ R++ C I YGS
Sbjct: 276 LNPEKTGEWSFWTYMMNARGKNIG--WRLDYFVLSK----RLLPCLCD--SIIRSQVYGS 327
Query: 335 DHCPVSLELS 344
DH P+ L ++
Sbjct: 328 DHAPIVLFMA 337
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 143/321 (44%), Gaps = 62/321 (19%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
T + + N K K WN N L +K ++ + PDV+ +QE + G
Sbjct: 165 TTSRAAPNGKPINFKIACWNVNGLKNAIKEGCLQYLEYE---KPDVLCIQETK---CGEG 218
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK 148
+ P + + P + Y W+S YAGT + K QP
Sbjct: 219 EIPADS---------------------AVPGYYGY--WYSAQKRGYAGTGMYSKT--QPI 253
Query: 149 KVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 204
+VSF L T+GRVI AEF FYL+ Y PN+G K E + R+ WD + ++L
Sbjct: 254 RVSFGLNVPEHDTEGRVITAEFADFYLVTAYVPNSGQKLE--TLPYRQTWDVAFRTYLLS 311
Query: 205 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 263
KP++ CGDLNV+H EID+ +P K + GFT ER+ F I
Sbjct: 312 LDAKKPVVLCGDLNVAHNEIDLKNP---------------KTNKRSAGFTPQEREGFTTI 356
Query: 264 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
L +D++R L+ E+ +S+ N G R+DYF+VS+ + +++
Sbjct: 357 LGT-EFVDSFRVLYPEESAYSFWSYRHNSRALNVG--WRLDYFVVSQRFMQSVADSQIRS 413
Query: 324 HGIELEGFYGSDHCPVSLELS 344
YGSDHCP+ L LS
Sbjct: 414 Q------VYGSDHCPIVLHLS 428
>gi|423458084|ref|ZP_17434881.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
gi|401148468|gb|EJQ55961.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
Length = 252
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 147/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYAYWNYAVKKGYSGTAIFSKK--EPLAVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ Q K P+++CGD
Sbjct: 88 QEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRAYIKQLDKKKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 144/310 (46%), Gaps = 71/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMP-AAGSKDAPKNHQELKDD 100
+KFV+WN N L +K F + + FD D +QE +M D P HQ
Sbjct: 1 MKFVSWNVNGLRAVLKKG---FEDIVKEFDADFFCIQETKMQEGQADVDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD- 158
++S A+ K Y+GTA+ K +P V+++ E D
Sbjct: 53 -------------------------YFSYAEKKGYSGTAIFTKH--EPLSVTYNFEGHDD 85
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDL 216
GR +L E++ FYLLN Y PN + E + R +W+ ++ + + + K ++ CGDL
Sbjct: 86 EGRAVLLEYDKFYLLNVYVPNA--QPELKRLEYRMQWEDDLRAMLSELAKKKHVVMCGDL 143
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ +P K + G PGF+ ER + +L G D +R L
Sbjct: 144 NVAHEEIDLKNP---------------KTNRGNPGFSDEERAKMTELLGAG-FTDTFRHL 187
Query: 277 HKEKDMDCGFSW---SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ E+ + +SW GN G RIDYF+V E LKD+I + G
Sbjct: 188 YPEQ--EGAYSWWSYRGNARKNNTG--WRIDYFVVDEGLKDKIKEAAIH------PDVMG 237
Query: 334 SDHCPVSLEL 343
SDHCPVSLEL
Sbjct: 238 SDHCPVSLEL 247
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 144/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGFGVPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ CGD
Sbjct: 87 TEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYF+VSE LKD+++ ++ + GS
Sbjct: 189 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 150/310 (48%), Gaps = 62/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L ++ F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKAIDADIFCIQETKL------------QENQKD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ K ++P VS+ +
Sbjct: 45 -------------IEGLDLNGYYAFWNFAEKKGYSGTAVFTK--YKPLSVSYGIGTPHHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E+E F+L+NTY PN+ + R +W++ + ++L+ S KP+I CGD
Sbjct: 90 KEGRVITLEYEKFFLVNTYTPNS--QRGLTRLDYRMQWEEDFRSYLLKLDSLKPVILCGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P AA + N GFT ER++ +L G ID +R+
Sbjct: 148 LNVAHQEIDIKNP---AANRRNA------------GFTDEEREKMTILLNSG-FIDTFRY 191
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K D WS + + R+DYFIVSE LKD +I ++ + GSD
Sbjct: 192 FYPDKK-DAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEVM------GSD 244
Query: 336 HCPVSLELSE 345
HCPV L + E
Sbjct: 245 HCPVVLIVKE 254
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+ Y +W+ A K Y+GTA+ KK +P V++ L+
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PDQEDAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 149/310 (48%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GT KK +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTXXFTKK--EPLSVQYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++ CGD
Sbjct: 87 TEGRVITLEFEKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L+ G +D++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + R RIDYF+VSE LKD ++ ++ + GS
Sbjct: 189 FY--PDLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 143/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F + D D LQE +M A G D
Sbjct: 1 MKLISWNVNGLRACVG---KDFETSFKSLDADFFCLQETKMQA-GQLDLA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F YQ +W+ AD K Y+GTA+ K+ P V++ +
Sbjct: 47 ------------------FNGYQSYWNYADKKGYSGTAIFTKQT--PLNVTYGMGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E E F+L+ Y PN+ ++E + R +W+ + ++L KP+I CGD
Sbjct: 87 HEGRVITLETENFFLVTVYTPNS--QDELRRLEYRMRWEDDFKAYLLALDARKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTELLAGG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + R RIDYF++SE LK+RI ++ YGS
Sbjct: 189 LYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLKERIADAKIH------TDIYGS 239
Query: 335 DHCPVSLEL 343
DHCP+ L+L
Sbjct: 240 DHCPIELDL 248
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 151/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKD--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG +D YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FVDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 152/316 (48%), Gaps = 71/316 (22%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
P ++WN N L +K F +F+ + PDV+ LQE ++ A + D
Sbjct: 3 PTHLLSWNVNGLRAVLKKG---FDDFLASQQPDVLCLQETKISADLTADF---------- 49
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EKT 157
A + P+ ++W+ A+ K Y+GTA++ + +P V + L EK
Sbjct: 50 -------------AFAGYPY----VYWNCAEKKGYSGTAIISQ--IEPISVRYGLGIEKH 90
Query: 158 D--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE----FVLQCSG---- 207
D GRVI AEFE +YL+ Y PN+ +E +R R+ D R E F+ G
Sbjct: 91 DQEGRVITAEFEDYYLVTVYTPNSQNHDEN---KRPRRLDYRTLEWDVDFLAYVKGLEVT 147
Query: 208 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 267
KP+++CGDLNV+H EID+++P K + GFT ER RF AI++ G
Sbjct: 148 KPVVFCGDLNVAHTEIDLANP---------------KTNRKNAGFTDEERGRFDAIIEAG 192
Query: 268 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
ID +R L+ ++ + WS + R RIDYF VS+ +K++I +
Sbjct: 193 -FIDTFRHLYPDRTEQYSW-WSYRAAARQRNIGWRIDYFCVSDAVKNQIRDATI------ 244
Query: 328 LEGFYGSDHCPVSLEL 343
L GSDHCPV L L
Sbjct: 245 LADTLGSDHCPVGLRL 260
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 152/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 NV-----------------EDYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFEGFYIITLYTPNA--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +K++I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERIKNQIKDAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 147/310 (47%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E + D D+ LQE ++ +++ D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLE---YFEEVDADIFCLQETKLQEG----------QIELDL 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
KA Y+ +W+ A K Y+GTA+ K +P V + L
Sbjct: 48 KA-------------------YKDYWNYAVKKGYSGTAIFTK--VEPLSVQYGLGIPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I E++ KP++ CGD
Sbjct: 87 TEGRVITLEFEAFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYIKNLDKTKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L G ID++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + R RIDYF+VS+ LKD+++ ++ + GS
Sbjct: 189 FY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSKRLKDKLVDAKIHSEVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+ Y +W+ A K Y+GTA+ KK +P V++ L+
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PDQEDAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINTEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ N+E+ PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNPK------------SNREN---PGFSDEEREKFSCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 148/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ K+ +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFSKQ--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITVEFEGFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 148/316 (46%), Gaps = 65/316 (20%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ + D +K ++WN N L V F + D D+ LQE ++ A +
Sbjct: 2 DEEDDKVKLISWNVNGLRAVVGKG---FVDIFNELDADIFCLQETKLQAGQIE------- 51
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
L P ++ Y W+ A+ K Y+GTA+ + +P V + +
Sbjct: 52 -------------------LDLPGYEQY---WNYAERKGYSGTAVFTR--IKPLSVRYGM 87
Query: 155 E----KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKP 209
+ T+GRVI E+++FYL+N Y PN+ K+ R KW+ + ++ KP
Sbjct: 88 DIAEHDTEGRVITLEYDSFYLVNVYTPNS--KDGLARLPYRMKWEDDFRNYLKTLEQTKP 145
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
++ CGDLNV+HEEID+ +P K + GF+ ER + +L G
Sbjct: 146 VVMCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTELLAAG-F 189
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
ID +R+ + +K + + WS + RIDYFIVS+ LK+R+I+ + +
Sbjct: 190 IDTFRYFYPDKTGEYSW-WSYRFNARKNNAGWRIDYFIVSDALKERLISASIH------Q 242
Query: 330 GFYGSDHCPVSLELSE 345
+GSDHCPV LEL E
Sbjct: 243 EIFGSDHCPVELELKE 258
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 146/309 (47%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK N F D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVKKN---FQESFQQLDADFFCLQETKM------------QEGQLDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ F Y +W+ A+ K Y+GTA+ K +P VS+ L
Sbjct: 46 Q-----------------FPGYTSYWNYAEKKGYSGTAIYTKH--KPIHVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E E F+L+ Y PN+ ++E R KW+ + ++ Q KP+I CGD
Sbjct: 87 QEGRVITLEMEDFFLITVYVPNS--QDELKRLDYRMKWEDDFRAYITQLDQIKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P+ NK + GFT ER + +L G ID +R+
Sbjct: 145 LNVAHEEIDLKNPK------------TNKRN---AGFTDEERNKMTRLLDNG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++SE LK+R+ ++ + GS
Sbjct: 189 LYPEQ---ITYSWWSYRFRAREKNAGWRIDYFLISERLKERLHDAKIHTEIM------GS 239
Query: 335 DHCPVSLEL 343
DHCPV LEL
Sbjct: 240 DHCPVELEL 248
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 150/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+ Y +W+ A K Y+GTA+ KK +P V++ L+
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG D YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FTDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PDQESAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 149/310 (48%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + D D+ LQE ++ AG D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FESVDADIFCLQETKL-QAGQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
L P +K+Y W+ A K Y+GTA+ K +P V + L+
Sbjct: 45 -------------LDLPEYKDY---WNYAVKKGYSGTAIFTK--IEPISVRYGLDIPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++ CGD
Sbjct: 87 TEGRVITLEFEKFFMITVYTPNS--QAELKRLDYRMTFEDAILTYVKKLDETKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F L+ G +D++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTTFLEAG-FVDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + + RIDYF+VSE LKD ++ ++ + GS
Sbjct: 189 FY--PDLEGAYSWWSYRMNARAQNTGWRIDYFVVSERLKDNLVDAKIHLDVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ N+E+ PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNPK------------SNREN---PGFSDEEREKFSCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSEGMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 148/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFSKK--KPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+++CGD
Sbjct: 88 QEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +K++I E+ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKNQITEAEINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 62/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L R N F+++ D DV +QE +M
Sbjct: 1 MKLVSWNVNGL--RACVNKGCFTDYFEQIDADVFCVQETKMQEG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---T 157
LS N +W+ A K Y+GTA+ K +P V + LE+
Sbjct: 43 ------------QLSLELGDNIHSYWNYALKKGYSGTAVFSK--IEPISVRYGLEEDEEA 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GR++ EF +FYL+N Y PN K + + R +W+ R +++++Q KP+I CGDL
Sbjct: 89 EGRILTLEFASFYLVNVYTPNA--KRDLSRLPYRLEWEDRFRKYIVQLDEKKPVIICGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K + G GFT ER +F +L G +D++R L
Sbjct: 147 NVAHQEIDIKNA---------------KSNVGNSGFTHEERGKFNELLGAG-FLDSFREL 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS P + R RIDYF++SE+L+ + + H GSDH
Sbjct: 191 YPDR-TDAYTWWSFMPKVRERNIGWRIDYFLISEKLRPHLKEAGIDSH------IMGSDH 243
Query: 337 CPVSLEL 343
CPV +EL
Sbjct: 244 CPVYVEL 250
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 150/310 (48%), Gaps = 62/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L ++ F ++ + D+ +QE ++ + HQ
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKKVNADIFCIQETKL---------QPHQT----- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L + Y +W+ A+ K Y+GTA+ K ++P V++ +
Sbjct: 44 ------------DLEELNLEGYYAFWNFAEKKAYSGTAVFTK--YKPLSVNYGIGIPQHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E+E FYL+NTY PN+ + R +W++ + ++L+ S KP+I CGD
Sbjct: 90 NEGRVITLEYEKFYLVNTYTPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILCGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P +A + N GFT ER++ +L G ID +R+
Sbjct: 148 LNVAHKEIDIKNP---SANRRNA------------GFTDEEREKMTMLLNSG-FIDTFRY 191
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K D WS + + RIDYFIVS+ LKD +I E+ + GSD
Sbjct: 192 FYPHKK-DAYTWWSYMRNAREKNIGWRIDYFIVSQRLKDYLIDAEIHSDVM------GSD 244
Query: 336 HCPVSLELSE 345
HCPV LE+ +
Sbjct: 245 HCPVVLEIDD 254
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 147/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+++CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +K++I E+ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKNQITEAEINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 146/308 (47%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F + D D+ A+QE ++ + EL+
Sbjct: 1 MKAVSWNVNGLRACLGKG---FLEYFKDVDADIFAIQETKLQ--------EGQVELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+ Y+ +W+ A K Y+GTA+ K P V++ ++
Sbjct: 47 ------------------LEGYEQYWNYAVKKGYSGTAVFTK--ISPLSVAYGIDIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI EFE FY +N Y PN+ + R KW+ +E++++ G KP+I CGD
Sbjct: 87 AEGRVITLEFENFYFVNVYVPNS--QRGLTRLDYRMKWEDDFREYLIKLDGIKPVICCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
NV+H+EID+ +P K + GFT ER++ +L G IDA+R+
Sbjct: 145 KNVAHQEIDLKNP---------------KSNRKNAGFTDEERQKMTELLNSG-FIDAFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ +K D WS + + RIDYFIVSE LKD+I E+ H + GSD
Sbjct: 189 LYPDKK-DAYTWWSYMFKAREKNVGWRIDYFIVSERLKDKIKDVEIHSHVM------GSD 241
Query: 336 HCPVSLEL 343
HCPV L++
Sbjct: 242 HCPVLLDI 249
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 139/308 (45%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKALDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+E + I L P ++ Y ++S Y+GTA+ + QP V++ +
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VQPLSVAYGIGAPEHDD 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI EFE YL+ Y PN K R W+ + F+L KP++ CGDL
Sbjct: 88 EGRVITMEFEELYLVTVYTPNA--KRALERLDYRMAWEDAFRAFLLNLRAKKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER +FG +L G +D +R L
Sbjct: 146 NVAHKEIDLKNP---------------KSNRHNAGFTDEERGKFGELLAAG-FVDTFRAL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ + WS + RIDYF+VSEEL+ R+ A E+ +GSDH
Sbjct: 190 YPDRRGAYTW-WSYLRHARETNAGWRIDYFLVSEELRGRVAAAEIHAD------IFGSDH 242
Query: 337 CPVSLELS 344
CPVSL LS
Sbjct: 243 CPVSLTLS 250
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 149/310 (48%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ AG D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKL-QAGQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P +K+Y W+ A K Y+GTA+ K +P V + L
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTKT--EPLSVQYGLGIPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ F+++ Y PN+ + E R ++ I +V + KP++ CGD
Sbjct: 87 DEGRVITLEFDKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +F A L+ G +D++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + R RIDYF+VSE LKD ++ ++ + GS
Sbjct: 189 FY--PDLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVL------GS 240
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 241 DHCPVELELN 250
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 150/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 144/307 (46%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ +QE ++ A +
Sbjct: 1 MKLVSWNVNGLRACVTKG---FMDYFNEADADIFCVQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
L P YQ +W+ A+ K Y+GTA+ + P V + LE+
Sbjct: 45 -------------LDLGP--EYQQYWNYAEKKGYSGTAVFTR--IAPLSVRYGLEEDSEP 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI EFE FYL+N Y PN K + + R +W++R + ++LQ KP+I CGDL
Sbjct: 88 EGRVITLEFEDFYLVNVYTPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K + G GFT+ ER + +L G ID++R
Sbjct: 146 NVAHQEIDLKNA---------------KSNHGNSGFTLEERGKMTDLLAAG-FIDSFRHF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS + R RIDYF+ S L +++ E+ H + GSDH
Sbjct: 190 YPDR-TDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVL------GSDH 242
Query: 337 CPVSLEL 343
CPVSL L
Sbjct: 243 CPVSLTL 249
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138.2|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 163/345 (47%), Gaps = 64/345 (18%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNG 180
W + +D + Y+G LL ++C P KVS+ + +GRVI+AEFE+F L+ Y PN G
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAG 175
Query: 181 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 239
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 --RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG--------- 224
Query: 240 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 299
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 ---NKKN---AGFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNV 277
Query: 300 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 278 GWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 144/307 (46%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ +QE ++ A +
Sbjct: 1 MKLVSWNVNGLRACVTKG---FMDYFNEADADIFCVQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
L P YQ +W+ A+ K Y+GTA+ + P V + LE+
Sbjct: 45 -------------LDLGP--EYQQYWNYAEKKGYSGTAVFTR--IAPLSVRYGLEEDSEP 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI EFE FYL+N Y PN K + + R +W++R + ++LQ KP+I CGDL
Sbjct: 88 EGRVITLEFEGFYLVNVYTPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K + G GFT+ ER + +L G ID++R
Sbjct: 146 NVAHQEIDLKNA---------------KSNHGNSGFTLEERGKMTDLLAAG-FIDSFRHF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS + R RIDYF+ S L +++ E+ H + GSDH
Sbjct: 190 YPDR-TDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVL------GSDH 242
Query: 337 CPVSLEL 343
CPVSL L
Sbjct: 243 CPVSLTL 249
>gi|444522078|gb|ELV13303.1| DNA-(apurinic or apyrimidinic site) lyase [Tupaia chinensis]
Length = 318
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 165/342 (48%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEVPALYEDPPDQKTSSSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDKFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ + F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPDTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 146/310 (47%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEE-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE F+++ Y PN+ K R KW+ + ++ + K P+I+CGD
Sbjct: 88 QEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNVSH+EID+ +P K + PGF+ ER++F IL+EG +D YRF
Sbjct: 146 LNVSHKEIDLKNP---------------KSNRKNPGFSDEEREKFTKILEEG-FVDTYRF 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ E+ + +SW +G R K + R+DYF+ SE LK +I ++ G
Sbjct: 190 LYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSE------IMG 240
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 241 SDHCPVELHM 250
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 146/310 (47%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLGIDEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE F+++ Y PN+ K R KW+ + ++ + K P+I+CGD
Sbjct: 88 QEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNVSH+EID+ +P K + PGF+ ER++F IL+EG +D YRF
Sbjct: 146 LNVSHKEIDLKNP---------------KSNRKNPGFSDEEREKFTKILEEG-FVDTYRF 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ E+ + +SW +G R K + R+DYF+ SE LK +I ++ G
Sbjct: 190 LYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSE------IMG 240
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 241 SDHCPVELHM 250
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 143/317 (45%), Gaps = 64/317 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V FS + D D+ +QE ++
Sbjct: 1 MKLVSWNVNGLRACVNKG---FSEYFAQTDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+E I AL P + Y W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQI---ALDYPDYHQY---WNYAEKKGYSGTAVFTK--VKPLSVRYGLEEDSEP 86
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GR+I EF+ FYL+ Y PN K + + R +W+ R + ++ KP+I CGDL
Sbjct: 87 EGRIITLEFDGFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILCGDL 144
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ + K + G GFT ER++ +L G ID +R
Sbjct: 145 NVAHEEIDLKNA---------------KGNRGNSGFTAEERQKMTDLLGAG-FIDTFRHF 188
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ E+ D WS P + R RIDYF+ S L + ++ H + GSDH
Sbjct: 189 YPEQ-TDAYTWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------GSDH 241
Query: 337 CPVSLELSEASSDSEKR 353
CPV L L+E + R
Sbjct: 242 CPVVLTLAEVPQAAAAR 258
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 63/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ +QE ++ + EL D
Sbjct: 1 MKLVSWNVNGLRACVNKG---FLDYFKQTDADIFCVQETKLQEG------QIELELGSD- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y+ +W+ A K Y+GTA+ + +P V + +E+ +
Sbjct: 51 ---------------------YRQYWNYAQKKGYSGTAVFTR--LEPLSVRYGIEEDEEP 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GR+I EF+ FYL+N Y PN K + + R +W++R + ++ Q KP+I CGDL
Sbjct: 88 EGRIITLEFQHFYLVNVYTPNA--KRDLSRLSYRLEWEERFRRYLQQLDAVKPVIICGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K + G GFT+ ER + +L G ID++RF
Sbjct: 146 NVAHQEIDLKNA---------------KSNLGNSGFTLEERGKMTDLLAAG-FIDSFRFF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS + R RIDYF+VS L ++++ E+ H + GSDH
Sbjct: 190 YPDR-TDVYSWWSYMAKVRERNIGWRIDYFLVSARLSEKLVDAEIDCHVL------GSDH 242
Query: 337 CPVSLELSE 345
CPV L +S+
Sbjct: 243 CPVRLTVSK 251
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352.2|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 163/345 (47%), Gaps = 64/345 (18%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNG 180
W + +D + Y+G LL ++C P KVS+ + +GRVI+AEFE+F L+ Y PN G
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAG 175
Query: 181 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 239
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 --RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG--------- 224
Query: 240 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 299
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 ---NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNV 277
Query: 300 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 278 GWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ LQE ++ A
Sbjct: 1 MKLISWNVNGLRACVTKG---FMDYFNESDADIFCLQETKLQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+ P Y +W+ A K Y+GTA+ K +P V + +E+
Sbjct: 42 ------------QIELPLEGRYSQYWNYAVKKGYSGTAVFTK--VEPLTVRYGIEEDSED 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GR++ EF+ FYL+N Y PN K + + R +W+ R + ++L+ KP+I CGDL
Sbjct: 88 EGRILTLEFDRFYLVNVYTPNA--KRDLSRLGYRLEWEDRFRAYLLELDAQKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K + G GFT ER + +L+ G ID +R L
Sbjct: 146 NVAHQEIDLKNA---------------KSNHGNSGFTTEERGKMTDLLESG-FIDTFRHL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
H E+D D WS P + R RIDYF+ S L A + GI+ GSDH
Sbjct: 190 HPERD-DAFSWWSFMPKVRERNIGWRIDYFLASARL-----APHVTDAGID-SAILGSDH 242
Query: 337 CPVSLELSEA 346
CPV ++L +A
Sbjct: 243 CPVMVQLEDA 252
>gi|426376144|ref|XP_004054867.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376146|ref|XP_004054868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376148|ref|XP_004054869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376150|ref|XP_004054870.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
Length = 318
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +YQ W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSYQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|383810829|ref|ZP_09966315.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
gi|383356543|gb|EID34041.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
Length = 249
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 149/309 (48%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F F+ D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KDFEQQFKDFNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
LS P +++Y W+ AD K Y+GTA+ K +P V++ +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKH--KPLSVTYGINIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E + FYL+ Y PN+ ++E + R KW++ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEMDDFYLVTVYTPNS--QDELRRLEYRMKWEEDFQSYLHKLDETKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTELLNNG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++SE L+DR+I ++ + GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLRDRLIDAKIHTETM------GS 239
Query: 335 DHCPVSLEL 343
DHCP+ ++L
Sbjct: 240 DHCPIEIDL 248
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 148/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEKSNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+++CGD
Sbjct: 88 QEGRVITLEFDDFYMITLYTPNS--KRGLERVDYRMEWEDDFRAYIKRLDEKKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG +D YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE------IMG 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 141/309 (45%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL--VKKCFQPKKVSFSLEKTDG 159
+E + I L P ++ Y ++S Y+GTA+ VK + + +G
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTRVKPLSVARGIGIPQHDNEG 89
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGD 215
RVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP++ CGD
Sbjct: 90 RVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRSFLLELRSKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER +FG +L G +D +R
Sbjct: 145 LNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVDTFRA 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ +K + WS + RIDYF+VSEEL+ RI A E+ +GSD
Sbjct: 189 LYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHAD------VFGSD 241
Query: 336 HCPVSLELS 344
HCPVSL LS
Sbjct: 242 HCPVSLTLS 250
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 141/309 (45%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL--VKKCFQPKKVSFSLEKTDG 159
+E + I L P ++ Y ++S Y+GTA+ VK + + +G
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTRVKPLSVARGIGIPQHDNEG 89
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGD 215
RVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP++ CGD
Sbjct: 90 RVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRAFLLELRSKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER +FG +L G +D +R
Sbjct: 145 LNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVDTFRA 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ +K + WS + RIDYF+VSEEL+ RI A E+ +GSD
Sbjct: 189 LYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHAD------IFGSD 241
Query: 336 HCPVSLELS 344
HCPVSL LS
Sbjct: 242 HCPVSLTLS 250
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 143/306 (46%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ F N+ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGLRACVRKG---FLNYFEEVDADIFCVQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L+ P + Y W+ A+ K Y+GTA+ K K +E+ D
Sbjct: 45 -------------LNLPGYHQY---WNYAEKKGYSGTAVFTKDKPLDVKYGLGIEEHDKE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLN 217
GRVI EFE FYL+N Y PN+ + E R W+ + ++ + S KP+I CGDLN
Sbjct: 89 GRVITLEFEDFYLVNVYTPNS--QRELTRLDYRMTWEDEFRNYLKELDSIKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+ +P N+ + GFT ER + +L G ID +R+ +
Sbjct: 147 VAHKEIDLKNP------------STNRRN---AGFTDEERGKMTELLGTG-FIDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+K+ D WS + R RIDYFIVSE KDR+ ++ GSDHC
Sbjct: 191 PDKE-DAYTWWSYMRKARDRNVGWRIDYFIVSERFKDRLKDAQIHSE------IMGSDHC 243
Query: 338 PVSLEL 343
PV LE+
Sbjct: 244 PVMLEI 249
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 141/309 (45%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL--VKKCFQPKKVSFSLEKTDG 159
+E + I L P ++ Y ++S Y+GTA+ VK + + +G
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTRVKPLSVARGIGIPQHDNEG 89
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGD 215
RVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP++ CGD
Sbjct: 90 RVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRAFLLELRSKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER +FG +L G +D +R
Sbjct: 145 LNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVDTFRA 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ +K + WS + RIDYF+VSEEL+ RI A E+ +GSD
Sbjct: 189 LYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHAD------VFGSD 241
Query: 336 HCPVSLELS 344
HCPVSL LS
Sbjct: 242 HCPVSLTLS 250
>gi|449664158|ref|XP_002161039.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Hydra
magnipapillata]
Length = 352
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 154/315 (48%), Gaps = 51/315 (16%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ + LK +WN L V N N++ DPDV+ LQE + D P
Sbjct: 82 DGRTSTLKICSWNVAGLRAWVNKN---GLNYVIEEDPDVLCLQETK---CTENDLPGQVL 135
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
++K+ K +++ Y ++W A K +G +L K +P KV++ L
Sbjct: 136 QMKNGPK------------VTNVSNSGYYMYWCNAKKKGCSGVSLWCK--LKPLKVTYGL 181
Query: 155 ----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKP 209
++GR+I AEFE +Y++ TY PN+G K + RR W+ + +V + KP
Sbjct: 182 GIKEHDSEGRLITAEFEKYYIITTYVPNSGQKLIRLDY--RRIWNTDYKNYVGELKKKKP 239
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
+I CGD NV+H EID+++P NK + GFT ER F A+L++G
Sbjct: 240 VIMCGDFNVAHTEIDIANPN------------SNKRN---AGFTEEERSDFTALLEDG-Y 283
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
ID +R L+ EK F W+ + + K R+DYFIV+++++D I C+ +
Sbjct: 284 IDTFRKLNPEKTGAYTF-WTYMMNARSKNKGWRLDYFIVTKDIEDDI--CD----SVIRS 336
Query: 330 GFYGSDHCPVSLELS 344
GSDHCP+ L L+
Sbjct: 337 SVMGSDHCPIVLNLA 351
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 150/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG +D YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FVDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 162/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPALYEDPPDQKTAPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF+TF L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDTFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 150/313 (47%), Gaps = 69/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ F ++ D D+ +QE ++ + +++ D
Sbjct: 1 MKLVSWNVNGLRACVRKG---FLDYFQEVDADIFCVQETKLQSG----------QIELD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P V + L +
Sbjct: 47 ------------------LKGYHQYWNYAEKKGYSGTAVFTKE--EPLSVHYGLGDVENE 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EF FYL+N Y PN+ + + R +W+ RI+ +++ KP++ CGD
Sbjct: 87 PEGRIITLEFPKFYLVNVYTPNS--QRDLARLPYRLEWEDRIRSYLIDLDKDKPVLLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + G GFT ER + +L G ID +R+
Sbjct: 145 LNVAHQEIDLRNP---------------KSNQGNSGFTKEERAKMSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ EK + ++W + I K R + + RIDYFI S+ L + I E+ H G
Sbjct: 189 FYPEK--EGAYTW-WSYINKARERNIGWRIDYFIASKRLANIIKNAEIHSH------IMG 239
Query: 334 SDHCPVSLELSEA 346
SDHCP+ LEL +
Sbjct: 240 SDHCPIVLELDSS 252
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 148/310 (47%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K VTWN N L V F +F D D+ ++QE ++ + D P
Sbjct: 1 MKLVTWNVNGLRACVNKG---FMDFFNEVDSDIFSVQETKLQKGQIEMDIP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK--- 156
Y+ +W A+ K Y+GTA K +P V LE+
Sbjct: 49 ---------------------GYEEYWDYAEKKGYSGTATFSK--IKPISVKTGLEEEKF 85
Query: 157 -TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+GRVI AE+E FYL+N Y PN+ + E R +W+ +++ + KP+I CG
Sbjct: 86 SKEGRVITAEYENFYLVNVYTPNS--QNELKRLDYRMEWEDYFADYLCELDKVKPVIMCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P+ NK++ GFTI ER + ++LK G +D+YR
Sbjct: 144 DLNVAHREIDLKNPK------------TNKKN---AGFTIEERDKMTSLLKRG-FVDSYR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+L+ D++ ++ WS + RIDYFIVS+ +KD+I ++ G
Sbjct: 188 YLY--PDIEGVYTWWSYRFNARKNNAGWRIDYFIVSDRIKDKIKDVKI------FSDVMG 239
Query: 334 SDHCPVSLEL 343
SDHCPV L++
Sbjct: 240 SDHCPVLLDI 249
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 151/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ Q+ + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QDGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 N-----------------LEEYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ + G
Sbjct: 190 LY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| exodeoxyribonuclease III [Clostridium leptum DSM 753]
Length = 261
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 148/315 (46%), Gaps = 65/315 (20%)
Query: 35 ENSKKD-PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E+ K D P++F++WN N L + +PEF D D+ LQE ++
Sbjct: 4 EHEKGDYPMRFISWNVNGLRACLTKGFPEF---FQQIDADIFCLQETKLQQG-------- 52
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFS 153
+ +++L P ++ Y W S Y+GTA+ KK +P VS+
Sbjct: 53 ------------QVEMVL------PGYRQY--WNSAVKKGYSGTAVFSKK--EPLSVSYG 90
Query: 154 L----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 208
L +GRVI EF FYL Y PN+ +E R +W+ ++++ S K
Sbjct: 91 LGIEEHDQEGRVITLEFPAFYLTTVYTPNS--QEGLKRLSYRMEWEDAFRDYLKGLDSKK 148
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P++ CGD+NV+H+EID+ +P K + GFT ER+RF +L G
Sbjct: 149 PVVVCGDMNVAHQEIDLKNP---------------KTNRKNAGFTDEERERFSQLLAAG- 192
Query: 269 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 328
ID+YR L+ EK +S+ N G RIDYF+VS+ + RI ++ +
Sbjct: 193 FIDSYRSLYPEKIEYSWWSYRFNARKNNAG--WRIDYFLVSDRIGGRIQDAKIHTQVM-- 248
Query: 329 EGFYGSDHCPVSLEL 343
GSDHCPV L+L
Sbjct: 249 ----GSDHCPVELDL 259
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 150/308 (48%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F ++ D D+ +QE ++
Sbjct: 1 MKLVSWNVNGIRACVKKG---FMDYFKEVDADIFCIQESKLQEG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ +LIL + Y +W+ A K Y+GTA+ KK +P V + L +
Sbjct: 42 ----QIELIL---------EGYHQYWNYAIKKGYSGTAVFTKK--EPLSVRYGLGDNETE 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GR++ E+E FYL+N Y PN+ + + R +W++RI+E++L KP+I CGD
Sbjct: 87 PEGRILTLEYEGFYLVNVYTPNS--QRDLARLPYRLEWEERIREYLLGLDQIKPVIMCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ + K + G GFT ER + +L G +DA+R+
Sbjct: 145 LNVAHFEIDLKNA---------------KSNRGNSGFTDEERGKMTRLLGSG-FVDAFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E + + WS + R RIDYFIVSE+LK+RI+ ++ GSD
Sbjct: 189 KYPEAEGAYTW-WSYMAKVRERNIGWRIDYFIVSEKLKERILDSQIHCD------IMGSD 241
Query: 336 HCPVSLEL 343
HCPV+LEL
Sbjct: 242 HCPVALEL 249
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 141/310 (45%), Gaps = 64/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V FS + D D+ +QE ++
Sbjct: 1 MKLVSWNVNGLRACVNKG---FSEYFAQTDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+E I AL P + Y W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQI---ALDYPDYHQY---WNYAEKKGYSGTAVFTK--VKPLSVRYGLEEDSEP 86
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GR+I EF+ FYL+ Y PN K + + R +W+ R + ++ KP+I CGDL
Sbjct: 87 EGRIITLEFDGFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILCGDL 144
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ + K + G GFT ER++ +L G ID +R
Sbjct: 145 NVAHEEIDLKNA---------------KGNRGNSGFTAEERQKMTDLLGAG-FIDTFRHF 188
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ E+ D WS P + R RIDYF+ S L + ++ H + GSDH
Sbjct: 189 YPEQ-TDAYTWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------GSDH 241
Query: 337 CPVSLELSEA 346
CPV L L+E
Sbjct: 242 CPVVLTLAEV 251
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 148/310 (47%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQG-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVAYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEEKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F +L+EG +D YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRVLEEG-FVDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +K++I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKEQITDAKINSEVM------G 240
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 241 SDHCPVELHI 250
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 67/308 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDDT 101
KF++WN N L +K+ F D D +QE ++ P D P HQ
Sbjct: 3 KFISWNVNGLRAAIKHG---FLQVFNEMDADFFCIQETKLAPGQLDLDLPDYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+W+ A+ K Y+GTA+ K+ P V + +
Sbjct: 54 ------------------------YWNYAEKKGYSGTAIFAKQ--PPLSVQYGINVPEFD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E+ FYL+NTY PN+G + + F R +++ E+V Q S K ++WCGD
Sbjct: 88 HEGRVITLEYPDFYLINTYVPNSGAELKRLDF--RHGFNEAFYEYVNQLSQQKSIVWCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ + PGFT ER F +LK G D +R+
Sbjct: 146 LNVAHQEIDLKNPQ---------------SNHHHPGFTDEERFDFSKLLKSG-FTDTFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +++ + WS + R RIDYF+ S +L +++ ++ + GSD
Sbjct: 190 FYPDQEHSYSW-WSYRFHARQRNAGWRIDYFVASADLDSQLVDAKIH------DQILGSD 242
Query: 336 HCPVSLEL 343
HCPV L++
Sbjct: 243 HCPVELDI 250
>gi|380796163|gb|AFE69957.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Macaca mulatta]
Length = 297
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 13 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 64
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 65 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 100
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL + C P KVS+ + +GRVI+AEF++F L+ TY PN G
Sbjct: 101 PSDKEGYSGVGLLSRHC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTTYVPNAG--R 156
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 157 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 204
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 205 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 260
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 261 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 296
>gi|384475785|ref|NP_001245038.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
gi|355693074|gb|EHH27677.1| hypothetical protein EGK_17940 [Macaca mulatta]
gi|355767431|gb|EHH62612.1| hypothetical protein EGM_21005 [Macaca fascicularis]
gi|383417983|gb|AFH32205.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946780|gb|AFI36995.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946782|gb|AFI36996.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946784|gb|AFI36997.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
Length = 318
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL + C P KVS+ + +GRVI+AEF++F L+ TY PN G
Sbjct: 122 PSDKEGYSGVGLLSRHC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTTYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|402875487|ref|XP_003901536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
gi|402875489|ref|XP_003901537.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
Length = 318
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL + C P KVS+ + +GRVI+AEF++F L+ TY PN G
Sbjct: 122 PSDKEGYSGVGLLSRHC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTTYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 62/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L ++ F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKAIDADIFCIQETKL------------QENQKD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ K ++P VS+ +
Sbjct: 45 -------------IEGLDLNGYYAFWNFAEKKGYSGTAVFTK--YKPLSVSYGIGTPHHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E++ F+L+N Y PN+ + R +W++ + ++L+ S KP+I CGD
Sbjct: 90 KEGRVITLEYKKFFLVNAYTPNS--QRGLTRLNYRMEWEEDFRSYLLKLDSVKPVILCGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P AA + N GFT ER++ +L G ID +R+
Sbjct: 148 LNVAHQEIDIKNP---AANRRNA------------GFTDEEREKMTILLNSG-FIDTFRY 191
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K D WS + + R+DYFIVSE LKD +I ++ + GSD
Sbjct: 192 FYPDKK-DAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEVM------GSD 244
Query: 336 HCPVSLELSE 345
HCPV L + E
Sbjct: 245 HCPVVLIVKE 254
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V + L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVMYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F +L+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ E+ + +SW +G R K + R+DYF++SE LK +I ++ G
Sbjct: 190 LYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSE------VTG 240
Query: 334 SDHCPVSLELS 344
SDHCPV L +
Sbjct: 241 SDHCPVELRMG 251
>gi|403745673|ref|ZP_10954450.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121241|gb|EJY55561.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
Length = 219
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 119/227 (52%), Gaps = 32/227 (14%)
Query: 122 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---KTDGRVILAEFETFYLLNTYAP 177
+YQ +W+ A+ K Y+GTA+ K P V + +E + +GR+I EFE Y++ Y P
Sbjct: 18 SYQQYWNYAEKKGYSGTAVFTK--IPPLSVRYGIEDDSEPEGRIITLEFEACYVVTVYTP 75
Query: 178 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 236
N K + + R +W+ R + ++L KP+I CGDLNV+HEEID+ +
Sbjct: 76 NA--KRDLSRLPYRLEWEDRFRAYLLHLDQNKPVIACGDLNVAHEEIDIKNA-------- 125
Query: 237 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 296
K + G GFT ER + +L G D +R+LH ++ D WS P +
Sbjct: 126 -------KSNRGNSGFTDEERSKMTQLLDAG-FTDTFRYLHPDR-ADAYTWWSNMPKVRE 176
Query: 297 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
R RIDYF++S L+D+II + H + GSDHCP+ LE+
Sbjct: 177 RNIGWRIDYFLISNRLRDKIIDARIDAHVL------GSDHCPIVLEV 217
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|441667374|ref|XP_004091971.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
Length = 318
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 165/342 (48%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KTATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ +++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEALRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 150/308 (48%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE ++ A +++ D
Sbjct: 1 MKLISWNVNGIRACVQKG---FCDFFKEVDADIFCIQESKLQAG----------QIELD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F+ Y +W+ A+ K Y+GTA+ KK +P +V++ +
Sbjct: 47 ------------------FEGYYQYWNYAEKKGYSGTAIFTKK--EPLQVTYGMGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ + E R +W+ + F+ + KP++ CGD
Sbjct: 87 KEGRVITLEFEDFYMVTVYTPNS--QNELARLSYRMEWEDEFRRFLKKLEETKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P ++N GFTI ER +F +L+ G ID +R+
Sbjct: 145 LNVAHKEIDLKNPN---TNQMNA------------GFTIEERTKFSELLEAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ + MD WS + + RIDYF+ S+ L+ ++++ ++ + GSD
Sbjct: 189 FYPDA-MDMYSWWSYRFKAREKNTGWRIDYFLASQGLESKLVSAKIHSQIL------GSD 241
Query: 336 HCPVSLEL 343
HCP+ LE+
Sbjct: 242 HCPIELEI 249
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + + + EF + I D D +QE + A
Sbjct: 1 MKFISWNVNGIRACLGKGFLEFFHQI---DADFFCIQETKCQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+++L + Y+ +W+ A K Y+GTA+ K P V + + D
Sbjct: 42 ------QVVL-------SIEGYEQYWNYAQKKGYSGTAIFTKH--TPLSVKYGVGAEDSQ 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCG 214
GR+I E++ FYL+N Y PN + + R +W+ R+ ++ L C KP+++CG
Sbjct: 87 DEGRIITLEYKNFYLVNVYTPNA--QRDLARLPLRLQWEDRLANYLQELNCQ-KPVVYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ + K + G GFT ER +F A+L+ G +D++R
Sbjct: 144 DLNVAHTEIDLKNA---------------KSNIGNSGFTYEERAKFSALLESG-FVDSFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ H E + D WS + R RIDYF+VS +LK++I + + H GS
Sbjct: 188 YKHPE-ETDHYTWWSYMNKVRERNIGWRIDYFVVSNQLKEQIESATIHPH------IMGS 240
Query: 335 DHCPVSLEL 343
DHCP+ L+L
Sbjct: 241 DHCPIELQL 249
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K +++CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F L+EG +D YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRTLEEG-FVDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE------IMG 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|349612033|ref|ZP_08891261.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
gi|348609208|gb|EGY59168.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
Length = 275
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 146/321 (45%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVK------NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + N N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRANETRSVLNKIKKANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ V+
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VT 98
Query: 152 FSL------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ L +GR+I EF+TFYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K +++CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F L+EG +D YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRTLEEG-FVDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE------IMG 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 148/309 (47%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KFV+WN N L + F T D D+ LQE +M P D P+
Sbjct: 1 MKFVSWNVNGLRACMNKG---FMETFQTLDADIFCLQETKMQPHQLELDLPR-------- 49
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
Y+ +W+ A+ K Y+GTA+ K +P VS+ L
Sbjct: 50 ----------------------YKQYWNSAEKKGYSGTAIFTK--VEPLNVSYGLGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GRVI EF+ F+++ Y PN+ K E R +W+ + ++++ + KP++ CG
Sbjct: 86 DHEGRVITLEFDKFFMVCVYTPNS--KRELERLDYRMQWEDAFRNYLVELNKQKPVVMCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ +P K + GFT ER + +L+ G +D +R
Sbjct: 144 DLNVAHKEIDLKNP---------------KTNRRSAGFTDEERSKMTELLQAG-FVDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+L+ +K + WS + RIDYFIVS+++++ I + GI E F+GS
Sbjct: 188 YLYPDKTSIYSW-WSYMRKARENNAGWRIDYFIVSKDIEENI-----KEAGIHNE-FFGS 240
Query: 335 DHCPVSLEL 343
DHCPVSLEL
Sbjct: 241 DHCPVSLEL 249
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 150/312 (48%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F +F T + D+ +QE ++ A EL
Sbjct: 1 MKLISWNVNGFRSCLTKG---FLDFFNTVEADIFCIQESKLSAG--------QIELS--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS----LEK 156
+ Y +++ A+ K Y+GTA+ KK QP SF L
Sbjct: 47 ------------------LEGYTQYFNYAERKGYSGTAVFTKK--QPLTCSFGMGIPLHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR+I E++ FYL+N YAPN+ + E + R W++ + +V S KP+I+CGD
Sbjct: 87 KEGRMITLEYDEFYLINLYAPNS--QAELARLEYRLTWEEDFRRYVQTLNSHKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ N+ + GFT ER +F +L+ G ID +R+
Sbjct: 145 LNVAHQEIDLKNPQ------------ANRRN---AGFTDEERLKFSELLESG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E+ D WS + R RIDYF +SE LKD + + E+ + GSD
Sbjct: 189 LYPEQK-DSYSWWSYRFNARVRNAGWRIDYFCMSERLKDSLQSAEIYTSVL------GSD 241
Query: 336 HCPVSLELSEAS 347
HCPV +E++ S
Sbjct: 242 HCPVGIEVNSFS 253
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 163/345 (47%), Gaps = 64/345 (18%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 29 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 80
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 81 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 116
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNG 180
W + +D + Y+G LL ++C P KVS+ + +GRVI+AEFE+F L+ Y PN G
Sbjct: 117 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAG 174
Query: 181 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 239
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 175 --RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG--------- 223
Query: 240 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 299
NK++ GFT E + FG +L+ L D++R L+ F W+ + +
Sbjct: 224 ---NKKN---AGFTPQEAQGFGEMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNV 276
Query: 300 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 277 GWRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 315
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K +++CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F L+EG +D YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREQFTRTLEEG-FVDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE------IMG 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ +K +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTRK--EPIAVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R +W+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG +D YRF
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTNILEEG-FVDTYRF 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+ SE LK +I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSEVM------G 240
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 241 SDHCPVELHI 250
>gi|344305891|ref|XP_003421623.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Loxodonta africana]
Length = 318
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDRKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + K P Q+L P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSEKKLPAELQDL---------------------PGLSHQYWLA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTVYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLDYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------G 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ + F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPDTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLLLA 317
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 148/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEASNADIFCLQEIKLQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+I+CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG +D YR
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRH 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+VS+ +K +I ++ I G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSDRIKGQITDAKINSEII------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|403340594|gb|EJY69586.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 437
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 59/318 (18%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
S+++PLK WN N + +K+ +F F P ++ L E ++
Sbjct: 87 SQEEPLKIWHWNVNGIRAVLKSG--KFQEFCEKAQPHILCLNETKI-------------- 130
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWS--LADSKYAGTALLVKKCFQ---PKKVS 151
D A +E + L A P Y W+ + YAGTA+L+ K ++ P KV
Sbjct: 131 ---DVDALAKENIKLQIAKWFPIDTQY---WNCCIVKKGYAGTAILINKNYKGSKPTKVE 184
Query: 152 FSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-- 205
+ + +GR++ A+F+ F L+ TY PN G + R +WD+ ++
Sbjct: 185 YGIGISKHDKEGRMVNAQFDKFNLVATYIPNAGVMGLDRLGYRVNEWDRDFHTYLKNTEV 244
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
+GKP+IWCGDLNV++E ID+ Y P KE G+TI ER F A L
Sbjct: 245 TTGKPVIWCGDLNVANEPIDI-------------YNPKGKEK--SAGYTIQERNSFKAFL 289
Query: 265 KEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
K+ ID YR L+ +S W+ + + + R+DYF+VS+ + ++ E+
Sbjct: 290 KDRAFIDTYRHLNPH---SVKYSYWNLRSGARDKDQGWRLDYFVVSDFMMPSVLTSEINN 346
Query: 324 HGIELEGFYGSDHCPVSL 341
++GSDHCP+SL
Sbjct: 347 E------YHGSDHCPLSL 358
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNTDIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ +K +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTRK--EPIAVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R +W+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG +D YRF
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTNILEEG-FVDTYRF 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF+ SE LK +I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSEVM------G 240
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 241 SDHCPVELHI 250
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 150/310 (48%), Gaps = 66/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ Q+ + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QDGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 N-----------------LEEYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+++CGD
Sbjct: 88 QEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ + + +SW +G + + R+DYF+VSE +KD+I ++ + GS
Sbjct: 190 LY--PNQEGAYSWWSYRMGARVKNIGWRLDYFVVSERMKDQITEAKINSEVM------GS 241
Query: 335 DHCPVSLELS 344
DHCPV L ++
Sbjct: 242 DHCPVELHIN 251
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|397481065|ref|XP_003811777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481067|ref|XP_003811778.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481069|ref|XP_003811779.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|146286033|sp|A1YFZ3.1|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4.1|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|410220880|gb|JAA07659.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220882|gb|JAA07660.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220884|gb|JAA07661.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256572|gb|JAA16253.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256574|gb|JAA16254.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256576|gb|JAA16255.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294028|gb|JAA25614.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294030|gb|JAA25615.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294032|gb|JAA25616.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+E+D+ +P K + PGF+ ER++F +L+EG ID YR+
Sbjct: 146 LNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF++SE LK +I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSEVM------G 240
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 241 SDHCPVELHI 250
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Pongo abelii]
gi|395745632|ref|XP_003778302.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|395745635|ref|XP_003778303.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|146286035|sp|A2T7I6.1|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLTALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 141/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F +F D D+ LQE ++ P+
Sbjct: 1 MKFISWNVNGLRACVTKG---FMDFFNEVDADIFCLQETKLQEGQIDLNPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y+ +W+ AD K Y+GTA+ KK +P V++ +
Sbjct: 50 ---------------------YESYWNYADKKGYSGTAIFTKK--KPLSVAYGIGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI EFE FY + Y PN+ + E + R +W+ + ++ S KP++ CGD
Sbjct: 87 HEGRVITLEFEDFYFVTVYTPNS--QTELKRLEYRMRWEDDFRAYLKNLDSKKPVVMCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F L+ G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERNKFTEFLESG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D + +S WS + RIDYF SE +KDR+++ ++ + GS
Sbjct: 189 FY--PDAEGMYSWWSYRFNARKNNAGWRIDYFCTSESMKDRLVSAKIHNEVL------GS 240
Query: 335 DHCPVSLEL 343
DHCPV L +
Sbjct: 241 DHCPVELVI 249
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 33 DKEAAGEGPALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 85 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 120
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 121 PSDKEGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 176
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 224
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 225 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 280
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 281 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|346644849|ref|NP_001231178.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695.2|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|354459810|pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459811|pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459812|pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459813|pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459814|pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459815|pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|309806468|ref|ZP_07700473.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
gi|308167141|gb|EFO69315.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
Length = 275
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 146/321 (45%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ VS
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VS 98
Query: 152 FSL------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ L +GR+I EF+TFYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|443428279|pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428283|pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428287|pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428291|pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
Length = 317
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 33 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 85 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 120
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 121 PSDKEGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 176
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 224
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 225 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 280
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 281 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 148/312 (47%), Gaps = 72/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAG-SKDAPKNHQEL 97
+K ++WN N L VK +F+TTF + DV ++QE +M A D P HQ
Sbjct: 1 MKLISWNVNGLRAVVK------KDFVTTFQQLNADVFSIQETKMQAGQLDLDLPGYHQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
++ A K Y+GTA+ K K +E+
Sbjct: 53 ----------------------------YFFYAKKKGYSGTAVFSKAEPISVKQGLGIEE 84
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 213
D GR I EF +YL+N+Y PN+ K + + R ++D ++E++LQ S KP+I C
Sbjct: 85 FDDEGRTITLEFPDYYLINSYTPNSQPKLKRVDY--RMRYDDVLREYMLQLSADKPVILC 142
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HEEID+ +P K + PGF+ ER +F +L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNHKNPGFSDQERDKFSELLDSG-FIDSF 186
Query: 274 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
R LH + + +S WS + RIDYF+VS+ + I ++ L Y
Sbjct: 187 RSLHPQ---EIKYSWWSYRFNARKNNAGWRIDYFVVSKNGQQLIQDADI------LTDIY 237
Query: 333 GSDHCPVSLELS 344
GSDHCP+ L+L+
Sbjct: 238 GSDHCPIELDLN 249
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 146/305 (47%), Gaps = 61/305 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N + +K F + + PD A+QE +M +
Sbjct: 3 KFISWNVNGIRACIKKG---FLDVLEGESPDYFAVQETKM-------------------Q 40
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--G 159
+EE L Y +W A K Y+GT +L K+ +E+ D G
Sbjct: 41 EGQEEILT----------NGYHQYWDSAKRKGYSGTLVLSKEEAVSTSKGIGIEEHDEEG 90
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNV 218
RV+ A+F+ FYL+N Y PN+ K E R+ W+ +++V++ + KP+I CGDLNV
Sbjct: 91 RVVTADFKDFYLVNVYVPNS--KPELARLDYRQHWEDDFRDYVVKLNKEKPVIICGDLNV 148
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H EID+ +P K + PGFT ER++F +L+ G D +R+ +
Sbjct: 149 AHTEIDLKNP---------------KTNRRNPGFTDEEREKFTELLEAG-FTDTFRYKYP 192
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
+K+ + WS + RIDYF+VS ++KD+I ++ L YGSDHCP
Sbjct: 193 DKEGAYTW-WSYRFNARKNNAGWRIDYFLVSNDVKDKIEDAKI------LSDVYGSDHCP 245
Query: 339 VSLEL 343
V LEL
Sbjct: 246 VVLEL 250
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 143/308 (46%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F + + D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACVNKG---FYEYFKEANADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+E I M + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQIEMEIGEA-----YHQYWNYAEKKGYSGTAVFTK--MEPLSVRYGLEEDHEP 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
+GRVI EF+ FYL+ Y PN K + + R +W+ R + ++LQ GK P++ CGDL
Sbjct: 88 EGRVITLEFQDFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRNYLLQLDGKKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K + G GFT ER++ ++L G +D YR+
Sbjct: 146 NVAHQEIDLKNA---------------KSNRGNSGFTPEEREKMTSLLAAG-FVDTYRYF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS P + R RIDYF+ SE L ++ + + GSDH
Sbjct: 190 YPDQ-TDAYTWWSFMPKVRERNIGWRIDYFLASERLAPALLRAGIDSQVM------GSDH 242
Query: 337 CPVSLELS 344
CPV LEL
Sbjct: 243 CPVVLELG 250
>gi|410961722|ref|XP_003987428.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Felis catus]
gi|410961726|ref|XP_003987430.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 3
[Felis catus]
gi|410961728|ref|XP_003987431.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 4
[Felis catus]
gi|410961730|ref|XP_003987432.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 5
[Felis catus]
Length = 318
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLEAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K +F D DV+ LQE +M A P+
Sbjct: 2 MKLISWNVNGLRAVMKK---DFEGIFEAMDTDVLCLQETKMQAGQLDYDPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
Y +++ A+ K Y+GTA+ + +P V++ +++
Sbjct: 51 ---------------------YYAYYNYAEKKGYSGTAVYTR--IKPLNVTYGIQEDEHN 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGD 215
T+GRVI E++ F+L+ Y PN+ + E R +W+ +E++ + KP++ CGD
Sbjct: 88 TEGRVITCEYDDFFLVCVYTPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVLCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P +A + N PGF+ ER++F +L G ID++R
Sbjct: 146 LNVAHKEIDLKNP---SANRKN------------PGFSDQEREQFTNLLDAG-FIDSFRE 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
LH +D WS + R RIDYF+VSE L++ I A ++ L+ GSD
Sbjct: 190 LHPNA-IDRYSWWSYRANARSRNTGWRIDYFVVSERLRNAIEAADI------LDQVLGSD 242
Query: 336 HCPVSLELS 344
HCPV ++L+
Sbjct: 243 HCPVMIKLN 251
>gi|149692696|ref|XP_001505181.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Equus
caballus]
Length = 318
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 162/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 146/308 (47%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
LK V+WN N L ++ + P F + D DV A+QE ++ + D P Q
Sbjct: 11 LKLVSWNVNGLRAVMRKD-PSFLQIFSQLDADVFAIQETKLQEGQVELDLPGYFQT---- 65
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKK--CFQPKKVSFSLEKT 157
W+ A+ K Y+GTA+ ++ +++ +
Sbjct: 66 --------------------------WNFAERKGYSGTAVFSREDPLRVIRQIGSDVADD 99
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRV EF TF+ ++ Y PN+ K+ + R WD+R + F+L+ KP++ CGD
Sbjct: 100 EGRVCALEFPTFWFVDVYTPNS--KQGLARIEERMGWDERFRLFLLELDAHKPIVTCGDF 157
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P N E+ PGF+ AER FG +L G D +R L
Sbjct: 158 NVAHQEIDLRNPS------------TNHEN---PGFSDAERDSFGRLLDAG-FTDTFRSL 201
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D++ +S WS + R RIDYF+ SE + DRI +G I E F GSD
Sbjct: 202 N--PDLEGAYSWWSYRMRARERNVGWRIDYFLTSERVADRI-----EGASIHDEVF-GSD 253
Query: 336 HCPVSLEL 343
HCP+ L++
Sbjct: 254 HCPIELQI 261
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 162/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + ++I
Sbjct: 34 EKESAGEGPVLYEDPPDQKTSPSG-----KAATLKICSWNVDGLRAWIKK---KGLDWIK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ + F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPDTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 3 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 54
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 55 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 90
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 91 PSDKEGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 146
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 147 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------G 194
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 195 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 250
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 251 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 286
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ +
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--LKPLSVSYGIGIEEHDN 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI EFE YL+ Y PN+ K R W+ + F+L KP++ CGDL
Sbjct: 88 EGRVITMEFEDVYLVTVYTPNS--KNGLLRLDYRMVWEDAFRAFLLDLRAKKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GFT ER +F +L G +D +R L
Sbjct: 146 NVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLAAG-FVDTFRAL 189
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D+ ++ WS + RIDYF+VSEEL+DRI A E+ +GSD
Sbjct: 190 Y--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------IFGSD 241
Query: 336 HCPVSLEL 343
HCPVSL L
Sbjct: 242 HCPVSLTL 249
>gi|410961724|ref|XP_003987429.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Felis catus]
Length = 404
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 120 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 171
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 172 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 207
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 208 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 263
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 264 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 311
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 312 NKKN---AGFTPQERQGFGELLEAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 367
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 368 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 403
>gi|334319618|ref|XP_001379263.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Monodelphis domestica]
Length = 320
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 155/315 (49%), Gaps = 59/315 (18%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + + SK P
Sbjct: 58 SGKSSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK--CSESKLPP---- 108
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
EL+D P YQ W S +D + Y+G LL ++C P V++ +
Sbjct: 109 ELQD------------------LPGLTYQYWSSPSDKEGYSGVGLLSRQC--PLSVTYGI 148
Query: 155 ----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-P 209
+GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ S K P
Sbjct: 149 GEEEHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLSAKKP 206
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
L+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L
Sbjct: 207 LVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQAVPL 251
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
D++R L+ E F W+ + + R+DYF++S+ L + +++ +
Sbjct: 252 TDSFRHLYPEAAYAYTF-WTYMMNARAKNVGWRLDYFLLSQALLPALCDSKIRSKAL--- 307
Query: 330 GFYGSDHCPVSLELS 344
GSDHCP++L L+
Sbjct: 308 ---GSDHCPITLLLA 319
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 149/328 (45%), Gaps = 64/328 (19%)
Query: 23 KKDGETTETSSEENSKKDP-LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
K D ++TS N+ KF +WN N L +K + P F+ T D D+ ALQE +
Sbjct: 9 KSDTAVSQTSRSSNTADTKEYKFASWNVNGLRAVLKKD-PSFTEIFETIDADIFALQETK 67
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 141
+ QE + D L P + +Q W Y+GTA+
Sbjct: 68 L------------QEGQVD--------------LDIPSY--FQTWNYAERKGYSGTAVFS 99
Query: 142 KKCFQP----KKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 197
++ +P +++ + +GRV EF+ F+ ++ Y PN+ KE+ R WD+R
Sbjct: 100 RE--EPLQVIRQIGSPVADNEGRVCALEFDRFWFVDVYTPNS--KEQLARLDERLVWDER 155
Query: 198 IQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 256
++F+ + S KPLI CGD NV+H EID+ +P + GF+ E
Sbjct: 156 YRDFIAELSAQKPLITCGDFNVAHTEIDLKNP---------------SSNHKNAGFSDEE 200
Query: 257 RKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDR 315
R+ F +L G D +R+ H D+ +S WS + RIDYF+VS
Sbjct: 201 RESFTKLLDAG-FTDTFRYRH--PDVTGAYSWWSYRFNARKNNAGWRIDYFLVSNR---- 253
Query: 316 IIACEMQGHGIELEGFYGSDHCPVSLEL 343
IA ++ G I L YGSDHCPV L +
Sbjct: 254 -IAQQITGAAI-LNEVYGSDHCPVELTI 279
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
gi|346308967|ref|ZP_08851071.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
gi|166029572|gb|EDR48329.1| exodeoxyribonuclease III [Dorea formicigenerans ATCC 27755]
gi|345901516|gb|EGX71315.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
Length = 250
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 140/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + F +F D D+ +QE +M + D P HQ
Sbjct: 1 MKFISWNVNGIRACAGKG---FMDFFQETDADIFCIQETKMQEGQLELDTPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+W+ A K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAKKKGYSGTAIFTKQ--EPISVSYGLGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GRVI EFE FY + Y PN+ + E R KW++ ++ + KP+I+CG
Sbjct: 86 DQEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMKWEEDFLTYLKKLEETKPVIFCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P K + GFT ER++F +L G +D +R
Sbjct: 144 DLNVAHTEIDLKNP---------------KTNRKNAGFTDEERQKFTELLNAG-FVDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + E+ + WS + + RIDYF VSE LKDR+ ++ L GS
Sbjct: 188 YFYPEQTGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKDRLEDAKI------LTDIMGS 240
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 143/308 (46%), Gaps = 62/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN N + R N ++ PD++ LQE T
Sbjct: 1 MKLTTWNVNGI--RSVLNKGALQEYVLEAQPDILCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
KA E+ + M F Y +W+ A K Y+GTA+ K+ +P V + L
Sbjct: 38 KAQPEQVDLGME------FAGYHAYWNSAVKKGYSGTAIFTKE--EPISVQYGLGIEEHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI AE+ +YL+ Y PN K + R+ W+ F+ + KP+I+CGD
Sbjct: 90 QEGRVITAEYADYYLVTVYTPNA--KRDLTRLSYRQVWEDDFLAFIKKLEETKPVIFCGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+++P K + GFT ER++F I++ G L+DA+RF
Sbjct: 148 LNVAHKEIDLANP---------------KTNTKNAGFTKEEREKFDQIVENG-LVDAFRF 191
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E + WS + R RIDYF+VSE L RI +++ GSD
Sbjct: 192 RYPEA-VGAYTWWSYMGGARARNIGWRIDYFVVSEVLTSRIQEVKIRAD------VTGSD 244
Query: 336 HCPVSLEL 343
HCPV +E+
Sbjct: 245 HCPVEMEI 252
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F +F D DV LQE ++ +
Sbjct: 1 MKFISWNVNGIRACVGKG---FLDFFKEVDADVFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P + Y W+ A+ K Y+GTA+ KK +P KV + +
Sbjct: 45 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I CGD
Sbjct: 87 KEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++F +L G ID YR+
Sbjct: 145 MNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ + WS + RIDYF S++L+DR+++ ++ + GSD
Sbjct: 189 FNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEVL------GSD 241
Query: 336 HCPVSLEL 343
HCPV LE+
Sbjct: 242 HCPVELEI 249
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 138/312 (44%), Gaps = 61/312 (19%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
S+K P +FV+WN N L +K P F +T + D+ A+QE ++ A G D
Sbjct: 2 SQKHPYRFVSWNVNGLRATLKKE-PSFLEIFSTLNADIFAIQETKLQA-GQVDLD----- 54
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLV--KKCFQPKKVSFS 153
Y WS A+ K Y+GTA+ K +
Sbjct: 55 -----------------------LDGYTQTWSYAERKGYSGTAVFSREKPLSTIHTIGCK 91
Query: 154 LEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 212
+GRV EFE F+ ++ Y PN+ K E R +WDK +EF++ KP+I
Sbjct: 92 AADNEGRVCALEFEKFWFVDVYTPNS--KNELARLDERMEWDKAYREFLVGLDAQKPVIT 149
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGD NV+H+EID+ +P N E+ GF+ ER F ++L G D
Sbjct: 150 CGDFNVAHQEIDLKNP------------ASNHEN---AGFSDEERAGFSSLLGAG-FTDT 193
Query: 273 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R H ++ +S WS + R RIDYF+VS + + + + +
Sbjct: 194 FRSAHPT--LEGAYSWWSYRMRSRERNAGWRIDYFLVSNRIANTVTSSAIYNE------I 245
Query: 332 YGSDHCPVSLEL 343
YGSDHCPV LEL
Sbjct: 246 YGSDHCPVGLEL 257
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 69/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K N F +F+ DPD++ LQE +K P + ++L T
Sbjct: 1 MKLISWNVNGLRAVLKKN---FLDFLAKEDPDILCLQE-------TKCTPDDVEQLWPAT 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ +W+ A K Y+GTA+ K +P VS +
Sbjct: 51 ---------------------FTTYWNTAQKKGYSGTAIFTKA--KPISVSLGINCPEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRV+ +E+ F+L+N Y PN+ K E R++WD ++ + KP+I+CGD
Sbjct: 88 MEGRVLTSEYPEFFLVNVYVPNS--KRELTRLAYRQQWDCDFLSYLKKLEKKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+++P K + GFT ER F ++K G ID +R
Sbjct: 146 LNVAHTEIDLANP---------------KANVKNHGFTPEERAGFSTVIKAG-FIDTFRE 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
K +SW +P+G R + + RIDYF++S L+ R+ +Q + G
Sbjct: 190 FEKGGGH---YSW-WSPMGGARSRNVGWRIDYFLISSALRPRLKRAFIQPN------IPG 239
Query: 334 SDHCPVSLELS 344
SDHCPV +ELS
Sbjct: 240 SDHCPVGIELS 250
>gi|296214367|ref|XP_002753758.1| PREDICTED: uncharacterized protein LOC100400557 isoform 1
[Callithrix jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: uncharacterized protein LOC100400557 isoform 2
[Callithrix jacchus]
Length = 318
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|259500789|ref|ZP_05743691.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|302190760|ref|ZP_07267014.1| exonuclease III [Lactobacillus iners AB-1]
gi|312871137|ref|ZP_07731235.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|312872693|ref|ZP_07732758.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|312874955|ref|ZP_07734974.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|329919752|ref|ZP_08276703.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
gi|259167483|gb|EEW51978.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|311089700|gb|EFQ48125.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|311091735|gb|EFQ50114.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|311093151|gb|EFQ51497.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|328937099|gb|EGG33527.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
Length = 275
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 146/321 (45%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ V+
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VT 98
Query: 152 FSL------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ L +GR+I EF+TFYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|146286032|sp|A1YES6.1|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 162/343 (47%), Gaps = 66/343 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +YQ +WS
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSYQ-YWS 120
Query: 129 LADSK--YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWK 182
K Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 121 APXXKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG-- 176
Query: 183 EEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 241
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG----------- 225
Query: 242 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 301
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 -NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGW 280
Query: 302 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 281 RLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|412987602|emb|CCO20437.1| predicted protein [Bathycoccus prasinos]
Length = 411
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 175/386 (45%), Gaps = 63/386 (16%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK--N 58
MKRF +EKE + + ET + +K P F+T N N LL ++ +
Sbjct: 1 MKRFL-TVEKE----------EEDNTETNAIKKAKIKRKYPSTFLTVNVNGLLSKINSPD 49
Query: 59 NWPEFSNFIT---TFDPDVIALQEVRMPA---AGSKDAPKNHQELKDD--TKASREEKLI 110
W E +T + + DVI++ E +P +G + K Q +D K+ RE
Sbjct: 50 KWKEKQTLLTYLRSANADVISITETWIPGNGSSGGSSSKKYTQPYSNDGTNKSYRESANG 109
Query: 111 LMRALSSPPF-KNYQIWWSLADSKYAGTALLV--KKCFQPKKVSFSLEKTD-------GR 160
+ L S F + Y +++ K AG LV ++ +P +V D GR
Sbjct: 110 IESLLDSNGFLRKYARYYNCFHQKSAGVLTLVNAEEVEKPNRVRLRFTNEDKGEEEWPGR 169
Query: 161 VILAEF------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIW 212
VI +F +L+TY+PNNG E S +RRR+WD + + + Q G IW
Sbjct: 170 VIECQFGDDEDANRLVVLSTYSPNNGSGAE--SRERRRRWDDSVLKRLTQLRKEGVDFIW 227
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
GDLNV+ + IDV + A P D+G GFT E++RF IL+ DA
Sbjct: 228 NGDLNVAPDGIDVKFDDIKAMENKKASDP----DYGVAGFTRNEQRRFQNILEASEASDA 283
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGK-------RMRIDYFIVSEELKDRIIAC------ 319
YR ++ E+ ++W + K GK MR+D +VS+ LK +I C
Sbjct: 284 YRVVNGERR---SYTWRAYTVNKVGGKVFNTVNPGMRLDLMVVSKNLKSKIQRCYHATDD 340
Query: 320 --EMQGHGIELEGFYGSDHCPVSLEL 343
+ + + +E F+GSDHC V LEL
Sbjct: 341 LPDTEAMKMPMEKFFGSDHCAVHLEL 366
>gi|403289383|ref|XP_003935839.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
gi|403289385|ref|XP_003935840.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
Length = 318
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEVAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 149/306 (48%), Gaps = 65/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN + FS+++ +PD++ LQE ++
Sbjct: 1 LKVISWNVAGFRSVLTKG---FSDYVVKENPDILCLQETKI------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSL----EK 156
K + +K SS P Y+ + AD + + GT LL K +P + F +
Sbjct: 39 KPTEVQK-------SSIP-SGYEYHFVSADQAGHHGTGLLTK--LKPLSLKFGIGIAKHD 88
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI AE++ FYL+NTY PN+G + +N R ++WD Q+++++ KP++WCGD
Sbjct: 89 TEGRVITAEYDDFYLVNTYIPNSGSRGLKNLDYRIKEWDVDFQKYLVELDKKKPVVWCGD 148
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFTI ER FG L +G ID+YR
Sbjct: 149 LNVAHTEIDLKNP---------------KTNTKSAGFTIQERTSFGDFLNKG-FIDSYRH 192
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ K+ F W+ +G R K + R+DYF+VS+ D I ++ G
Sbjct: 193 YNPGKEGAFTF-WT--YMGGARAKNVGWRLDYFVVSKRYIDSIKTPFIR------STVMG 243
Query: 334 SDHCPV 339
SDHCP+
Sbjct: 244 SDHCPI 249
>gi|395502890|ref|XP_003755806.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Sarcophilus harrisii]
Length = 321
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 59/315 (18%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 59 SGKPSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSESKLPSELQ 112
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
+L P YQ W S D + Y+G LL ++C P V+F +
Sbjct: 113 DL---------------------PGLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGI 149
Query: 155 ----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-P 209
+GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ + K P
Sbjct: 150 GEEEHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAKKP 207
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
L+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L
Sbjct: 208 LVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPL 252
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
D++R L+ E F W+ + + R+DYF++S+ L + +++ +
Sbjct: 253 TDSFRHLYPEAAYAYTF-WTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL--- 308
Query: 330 GFYGSDHCPVSLELS 344
GSDHCP++L L+
Sbjct: 309 ---GSDHCPITLLLA 320
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ +KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFMKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+++CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG +D YR
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRH 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + + +SW +G R K + R+DYF+VSE +K +I ++ G
Sbjct: 190 LY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERIKGQITDAKINSE------IMG 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 143/305 (46%), Gaps = 61/305 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN N L + F +F D D+ +QE ++
Sbjct: 3 KLVSWNVNGLRSCIGKG---FWDFFKEVDADIFCVQETKL-------------------- 39
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--G 159
+E +L L + Y+ +W+ A K Y+GTA+ K +E+ D G
Sbjct: 40 --QEGQLEL-------EIEGYEHYWNYAVKKGYSGTAIFTKIKPVSSSCGIGIEEHDNEG 90
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 218
RVI EFE F+L+N Y PN+ K E + R KW+ +E++ Q KP+I CGD+NV
Sbjct: 91 RVITLEFEEFFLVNVYTPNS--KRELERLEYRMKWEDDFREYLKQLEQTKPVIICGDMNV 148
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+ +P NK GFT+ ER++F +L+ G +D +R L+
Sbjct: 149 AHQEIDLKNPR------------SNKR---SAGFTMEEREKFSQLLEHG-FVDTFRMLYP 192
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
+K + WS + + RIDYF VS LKDRI A E+ + GSDHCP
Sbjct: 193 DKTGAYTW-WSYMFKSREKNAGWRIDYFCVSGALKDRIEAAEIYSDTM------GSDHCP 245
Query: 339 VSLEL 343
V L +
Sbjct: 246 VGLTI 250
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 251
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K +F D DV+ LQE +M A P+
Sbjct: 1 MKLISWNVNGLRAVMKK---DFEGIFEAMDTDVLCLQETKMQAGQLDYDPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
Y +++ A+ K Y+GTA+ + +P V++ +++
Sbjct: 50 ---------------------YYAYYNYAEKKGYSGTAVYTR--IKPLNVTYGIQEDEHN 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGD 215
T+GRVI E++ F+L+ Y PN+ + E R +W+ +E++ + KP++ CGD
Sbjct: 87 TEGRVITCEYDDFFLVCVYTPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P +A + N PGF+ ER++F +L G ID++R
Sbjct: 145 LNVAHKEIDLKNP---SANRKN------------PGFSDQEREQFTNLLDAG-FIDSFRE 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
LH +D WS + R RIDYF+VSE L++ I A ++ L+ GSD
Sbjct: 189 LHPNA-IDRYSWWSYRANARSRNIGWRIDYFVVSERLRNAIEAADI------LDQVLGSD 241
Query: 336 HCPVSLELS 344
HCPV ++L+
Sbjct: 242 HCPVMIKLN 250
>gi|395502892|ref|XP_003755807.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Sarcophilus harrisii]
Length = 320
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 59/315 (18%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 58 SGKPSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSESKLPSELQ 111
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
+L P YQ W S D + Y+G LL ++C P V+F +
Sbjct: 112 DL---------------------PGLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGI 148
Query: 155 ----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-P 209
+GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ + K P
Sbjct: 149 GEEEHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAKKP 206
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
L+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L
Sbjct: 207 LVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPL 251
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
D++R L+ E F W+ + + R+DYF++S+ L + +++ +
Sbjct: 252 TDSFRHLYPEAAYAYTF-WTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL--- 307
Query: 330 GFYGSDHCPVSLELS 344
GSDHCP++L L+
Sbjct: 308 ---GSDHCPITLLLA 319
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 150/311 (48%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ Q+ + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QDGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE F+++ Y PN+ K R KW+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F +L+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D +SW +G R K + R+DYF+VSE +K++I ++ + G
Sbjct: 190 LY--PDQKGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKNQITEAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHVN 251
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 140/306 (45%), Gaps = 65/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F+ D D +QE +M K
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAETFQKLDADFFCIQETKMQEGQLK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
L P ++ Y ++ A+ K Y+GTA+ K +P VS+ ++
Sbjct: 45 -------------LDLPGYRQY---FNYAERKGYSGTAIFAKD--EPLTVSYGIQAPEFD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S KP+I CGD
Sbjct: 87 HEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER+ F +L +G +D +R
Sbjct: 145 LNVAHHEIDLKNP---------------KSNHHNAGFTDEERQSFTKLLDQG-FMDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ D WS + R RIDYF+ S+ L D I ++ L +GSD
Sbjct: 189 FYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKI------LTDIFGSD 241
Query: 336 HCPVSL 341
HCPV L
Sbjct: 242 HCPVEL 247
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +PE I D D + LQE +M A +L+ D
Sbjct: 1 MKFISWNVNGLRAVFGKGFPEI---IQGLDADFVCLQETKMQAG----------QLEAD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+Y +W+ A+ K Y+GTA+ + +P VS+ +
Sbjct: 47 ------------------LPSYHTYWNYAEKKGYSGTAIYTRH--EPLSVSYGIGIDHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
T+GRVI E+ FYL+ Y PN+ +++ R W+ + ++++ K P+I CGD
Sbjct: 87 TEGRVITLEYTDFYLVTVYVPNS--QDDLRRLGYRMTWEDDFRAYLVELDKKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHQEIDLKNP---------------KSNRRNAGFTDEERGKFQELLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H ++ D WS + R RIDYF+ S+ L ++ + ++ +GSD
Sbjct: 189 FHPDQ-RDIYSWWSYRFKARERNSGWRIDYFVTSQRLAPQLASAKIHTE------IFGSD 241
Query: 336 HCPVSLEL 343
HCPV L L
Sbjct: 242 HCPVELVL 249
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 143/307 (46%), Gaps = 59/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + +K F +I PD+IA+QEV+ +D
Sbjct: 1 MKFISWNVNWIRASIKK---WFIEYIQDEKPDIIAMQEVKAT--------------EDQF 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
A E +L+ + FKN+ Y+ TA+ K+ +P +V++ L
Sbjct: 44 PARLEMELMWYSIYWNAAFKNW----------YSWTAIFTKE--KPLEVTYWLWIWEHDN 91
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+ R+I EFE FY + Y PN+ K E N + R+ WD +++ + KP++ C DL
Sbjct: 92 EWRIITLEFEKFYFITVYTPNS--KRELNRLEYRQLWDSLFLDYMRRLEVNKPVVVCWDL 149
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P+ PN+ GFT ER+ F L G ID +R+
Sbjct: 150 NVAHKEIDLKNPK------------PNR---WNAGFTDEEREGFQKFLNAG-FIDTFRYF 193
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ EK + WS + R RIDYF+ S LKD + ++ GSDH
Sbjct: 194 YPEKTEAYSW-WSNFAFARDRNIGWRIDYFLTSWGLKDNL------KDAFIMDQILGSDH 246
Query: 337 CPVSLEL 343
CPV LE+
Sbjct: 247 CPVWLEI 253
>gi|348577629|ref|XP_003474586.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cavia
porcellus]
Length = 318
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEEAGEGPALYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL + + +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQELSELS---------------------HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PIKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNAAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 140/306 (45%), Gaps = 65/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F+ D D +QE +M K
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAEIFQKLDADFFCIQETKMQEGQLK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
L P ++ Y ++ A+ K Y+GTA+ K +P VS+ ++
Sbjct: 45 -------------LDLPGYRQY---FNYAERKGYSGTAIFAKD--EPLTVSYGIQAPEFD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S KP+I CGD
Sbjct: 87 HEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P+ + GFT ER+ F +L +G +D +R
Sbjct: 145 LNVAHHEIDLKNPQ---------------SNHHNAGFTDEERQSFTKLLDQG-FMDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ D WS + R RIDYF+ S+ L D I ++ L +GSD
Sbjct: 189 FYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKI------LTDIFGSD 241
Query: 336 HCPVSL 341
HCPV L
Sbjct: 242 HCPVEL 247
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 147/309 (47%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + K +F + I+ DPDV+ LQE T
Sbjct: 1 MKIISWNVNGVRAITK---KDFFDDISKMDPDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
KA EE + ALS +Y +++ A+ K Y+G A+L KK +P V++ +
Sbjct: 37 KAQNEE---VEEALSE--MTDYHQYYNSAERKGYSGVAILSKK--EPISVTYDMGIAEHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI AE++TFYL+N Y PN+G K E + R+ WD ++ K +I CGD
Sbjct: 90 TEGRVICAEYDTFYLVNVYVPNSGQKLERLDY--RKGWDTDFHNYLKNIEKTKSVILCGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+ ID+ N NK G+T E L EG +D +R
Sbjct: 148 LNVAHQAIDLK----------NDKANYNK----TAGYTQIEIDGMDNFLNEG-FVDTFRH 192
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H E ++ WS + R RIDYF+VS L +++ E+ L ++GS
Sbjct: 193 FHPET---VAYTYWSYRFKSRERNTGWRIDYFLVSNPLVEKVNKVEI------LSEYFGS 243
Query: 335 DHCPVSLEL 343
DHCP+ LE+
Sbjct: 244 DHCPIKLEI 252
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 146/311 (46%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+++CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG +D YR
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRH 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + + +SW +G R K + R+DYF+VSE +K +I ++ G
Sbjct: 190 LY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERIKGQITDAKINSE------IMG 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 151/312 (48%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK + E +++FD DV +QE T
Sbjct: 1 MKLVSWNVNGIRASVKKGFEEV---VSSFDADVFCVQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----- 155
KA ++ + +S +Y+++ + A+ K Y+GTA+L KK K ++F+++
Sbjct: 37 KAQDDQVKEALAGIS-----DYELFCNSAEKKGYSGTAILSKK----KPLTFTVDMGKEE 87
Query: 156 -KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
T+GR+ E+E F+L+N Y PN+G R WDK ++ + S KPLI
Sbjct: 88 HDTEGRITHVEYEEFHLVNVYVPNSG--SGLKRLDYRSIWDKDFTAYLKKLSESKPLIIT 145
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP-GFTIAERKRFGAILKEGRLIDA 272
GD NV+H D+++P K ++ + GFT E F AILKE L+D+
Sbjct: 146 GDFNVAHTANDLANP---------------KSNYNKTSGFTQVEIDGFDAILKELNLVDS 190
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+R LH F WS + R RIDYF+VSE + ++ + E+ +
Sbjct: 191 FRTLHPTTFHKYTF-WSMRGGARGRNVGWRIDYFLVSESIWPKVQSAEIH------DQVM 243
Query: 333 GSDHCPVSLELS 344
GSDHCP+SLE+S
Sbjct: 244 GSDHCPISLEIS 255
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 138/307 (44%), Gaps = 62/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L R N F + + D DV +QE ++ A
Sbjct: 1 MRFVSWNVNGL--RACVNKGAFLPYFESADADVFCIQETKLQAG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL---EKT 157
+ P + YQ +W+ A+ K Y+GTA+ + P V +
Sbjct: 43 ------------QIELPIGEAYQQFWNYAERKGYSGTAVFTR--ITPLDVRYGFGDGNDP 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GR+I EF +FY++ Y PN K + + R +W+ ++ KP+I CGDL
Sbjct: 89 EGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFCAYLCALDREKPVIACGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ + K + G GFT ER + +L G +D +R L
Sbjct: 147 NVAHEEIDIKNA---------------KSNRGNSGFTDEERAKMTELLAAG-FVDTFRAL 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
H D WS P + R RIDYF+VSE L+DRI+ + H + GSDH
Sbjct: 191 HPNV-TDKYTWWSNMPGVRERNIGWRIDYFLVSERLRDRILDARIDDHVL------GSDH 243
Query: 337 CPVSLEL 343
CPV LE+
Sbjct: 244 CPVVLEV 250
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ +G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL-QSGQIDLD---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 48 ------------------LEGYYTYWNYALKKGYSGTAIFTKK--EPISVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+++CGD
Sbjct: 88 QEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++ +L+EG ID YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKITRVLEEG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ E+ + +SW +G R K + R+DYFI+SE LK +I+ ++ + G
Sbjct: 190 LYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFIISERLKHKILDAKINSEVM------G 240
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 241 SDHCPVELHM 250
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F +F D D+ LQE ++ +
Sbjct: 1 MKFISWNVNGIRACVGKG---FLDFFKEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P + Y W+ A+ K Y+GTA+ KK +P KV + +
Sbjct: 45 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I CGD
Sbjct: 87 KEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++F +L G ID YR+
Sbjct: 145 MNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ + WS + RIDYF S++L+DR+++ ++ + GSD
Sbjct: 189 FNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEIL------GSD 241
Query: 336 HCPVSLEL 343
HCPV LE+
Sbjct: 242 HCPVELEI 249
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 143/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F ++ D DV +QE + +
Sbjct: 1 MKCVSWNVNGVRAVLTKG---FLDYFKAVDADVFCIQETKCQEGQVE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+ P + YQ W Y+GTAL KK +P VS+ L T
Sbjct: 45 -------------IELPGY--YQYWNYAQKKGYSGTALFSKK--EPLSVSYGLGIAEHDT 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AEFE Y++ Y PN + E R W+ + ++ + KP+I CGDL
Sbjct: 88 EGRVITAEFEEAYVVTVYTPNA--QNELARIDYRMAWEDAFKAYLKKLEENKPVIICGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + G GF+ ER +FG +L+ G ID +R+
Sbjct: 146 NVAHQEIDLKNP---------------KTNRGNAGFSDEERGKFGELLEAG-FIDTFRYF 189
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D++ +S WS + + RIDYF+ SE LKD+++ G I+ E GSD
Sbjct: 190 Y--PDLEGAYSWWSYRFKAREKNTGWRIDYFLASEVLKDKLV-----GAAIDAE-ILGSD 241
Query: 336 HCPVSLELS 344
HCPV LE++
Sbjct: 242 HCPVILEIN 250
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 146/317 (46%), Gaps = 65/317 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L VK F +F D DV LQE +
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLDFFQQVDADVFCLQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L + S Y+ +W+ A+ K Y+GTA+ K P V++ + +
Sbjct: 38 ---------LQKGQISLELPGYEQYWNDAERKGYSGTAIFTKH--SPLSVTYGIGDHFPE 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGD 215
+GRVI EFET+Y++ Y PN K + + R +W+K +E++ L + KP+++CGD
Sbjct: 87 NEGRVITLEFETYYVVTMYTPNA--KRDLSRLPYRLQWEKAAREYLTLLATQKPVVFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+ IDV + ++ + G GFT ER FG +L+ G +D +R
Sbjct: 145 LNVAHQPIDVRN---------------DRANVGNSGFTDEERAEFGKLLEAG-FVDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ + D D WS + R RIDYF++S L ++ + + GSD
Sbjct: 189 FYPD-DEDAFTWWSYMANVRARNIGWRIDYFLISRALMPYLVDASIHSSVL------GSD 241
Query: 336 HCPVSLELSEASSDSEK 352
HCP+ L L ++S +
Sbjct: 242 HCPIELCLDLQPNESSR 258
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
gi|149734775|gb|EDM50692.1| exodeoxyribonuclease III [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 147/308 (47%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V F +F D D+ +QE +M
Sbjct: 1 MKLISWNVNGIRACVTKG---FMDFFNEIDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+E +L L P + Y W+ A+ K Y+GTA+ KK K +E+ D
Sbjct: 39 ---QEGQL----ELEMPGYYQY---WNYAEKKGYSGTAIFTKKEPMDVKYGIGIEEHDHE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GRVI EFE FY++ Y PN+ + E R +W+ + ++ + KP++ CGDLN
Sbjct: 89 GRVITLEFEDFYMVTCYTPNS--QNELKRLDYRMQWEDDFKAYLKKLEESKPVVLCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+ +P K + GFT ER++ +L +G ID +R+ +
Sbjct: 147 VAHKEIDLKNP---------------KTNRKNAGFTDEEREKMTKLLDDG-FIDTFRYFY 190
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
D++ +S WS + + RIDYFIVSE LKD+ ++G I E GSDH
Sbjct: 191 --PDLEGKYSWWSYRFKAREKNAGWRIDYFIVSEALKDK-----LEGADIHTE-ILGSDH 242
Query: 337 CPVSLELS 344
CP+ L+L+
Sbjct: 243 CPIELDLN 250
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F +F D D+ LQE ++ +
Sbjct: 6 MKFISWNVNGIRACVGKG---FLDFFKEVDADIFCLQETKLQEGQIE------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P + Y W+ A+ K Y+GTA+ KK +P KV + +
Sbjct: 50 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGINIEEHD 91
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I CGD
Sbjct: 92 KEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGD 149
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++F +L G ID YR+
Sbjct: 150 MNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRY 193
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ + WS + RIDYF S++L+DR+++ ++ + GSD
Sbjct: 194 FNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEIL------GSD 246
Query: 336 HCPVSLEL 343
HCPV LE+
Sbjct: 247 HCPVELEI 254
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ ++ K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSA-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + SDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------ASDHCPITLYLA 317
>gi|417317886|ref|ZP_12104489.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
gi|328473849|gb|EGF44679.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
Length = 225
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 123/237 (51%), Gaps = 38/237 (16%)
Query: 115 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETF 169
L P +K+Y W+ A K Y+GTA+ K +P V + L T+GRVI EFE F
Sbjct: 19 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGLGVPEHDTEGRVITLEFEEF 73
Query: 170 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 228
+++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+ +P
Sbjct: 74 FMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP 131
Query: 229 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS- 287
K + GF+ ER +F A L G ID++R+ + D+ +S
Sbjct: 132 ---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSW 173
Query: 288 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 174 WSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 224
>gi|429726547|ref|ZP_19261335.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
gi|429146016|gb|EKX89089.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
Length = 267
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 142/317 (44%), Gaps = 69/317 (21%)
Query: 35 ENSKKDPLKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E K +KF++WN N L R K F D D LQE ++
Sbjct: 11 ETHKNSMMKFISWNVNGLRACREKG----FEESFAQLDADCFCLQETKL----------- 55
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
QE + D F Y+ +W+ A+ K Y+GT + + +P V +
Sbjct: 56 -QEGQIDI-----------------AFDGYESYWNYAEKKGYSGTCIFTR--IKPLSVRY 95
Query: 153 SL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG- 207
L +GRVI EFE YLL Y PN+ ++ R WD + +V Q
Sbjct: 96 GLGIEEHDHEGRVITLEFEDLYLLTVYTPNS--QDGLRRLDYRMTWDDDFRAYVQQLDAH 153
Query: 208 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 267
KP++ CGDLNV+H+EID+ +P K + GFT ER++F +L+ G
Sbjct: 154 KPVVICGDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERQKFSQLLEAG 198
Query: 268 RLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 326
D YRF + D+ +S WS + + RIDYF+ S+ L DR+++ ++
Sbjct: 199 -FTDTYRFFN--PDLTDSYSWWSYRFKAREKNAGWRIDYFVTSQSLNDRLVSADIH---- 251
Query: 327 ELEGFYGSDHCPVSLEL 343
+ +GSDHCPV L +
Sbjct: 252 --QEIFGSDHCPVELVI 266
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 147/310 (47%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+E+D+ +P K + PGF+ ER++F +L+ G ID YR+
Sbjct: 146 LNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF++SE L+ +II ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLEHKIIDAKINSEVM------G 240
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 241 SDHCPVELHI 250
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 141/305 (46%), Gaps = 61/305 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + F ++ D D+ +QE SK P EL+ D
Sbjct: 3 KLISWNVNGLRACINKG---FLDYFKKADADIFCIQE-------SKVQP-GQIELELD-- 49
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL--VKKCFQPKKVSFSLEKTDG 159
Y +W+ A+ K Y+GTA+ +K + + +G
Sbjct: 50 -------------------GYHQYWNYAERKGYSGTAVFTRIKPLYVQNGIGIDEHDREG 90
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNV 218
RVI EF+ +YL+N Y PN K+E R KW+ + +++ K P+I CGD+NV
Sbjct: 91 RVITLEFDNYYLVNVYTPNA--KKELERLDYRMKWEDDFRNYLVGLKAKKPVIVCGDMNV 148
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+ +PE N+ GFT ER +F +L G ID +RF +
Sbjct: 149 AHKEIDLKNPE------------SNRR---SAGFTDEERAKFTELLNAG-FIDTFRFFYP 192
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
+K + WS + R RIDYF VSEELKDR+++ + + GSDHCP
Sbjct: 193 DKTGAYTW-WSYMFNARARNAGWRIDYFCVSEELKDRLVSASIH------DDVMGSDHCP 245
Query: 339 VSLEL 343
V L++
Sbjct: 246 VELQI 250
>gi|409386093|ref|ZP_11238562.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
gi|399206574|emb|CCK19477.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
Length = 277
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 145/320 (45%), Gaps = 65/320 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL + ++ P + S + T D DVIALQE ++ A G K H
Sbjct: 3 MKFISWNIDSLNAALTSDSPRAQLSQAVLTHLASLDADVIALQETKLSAKGPT---KKHL 59
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQ----- 146
E+ A R F Y I W A YAGT L K+
Sbjct: 60 EIL----AER--------------FPGYAIAWRSSVEPARKGYAGTMFLYKQELSVTIET 101
Query: 147 PKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
P+ + S ++GR+I EF+ FYL Y PN G + R+ WD++ ++++L+
Sbjct: 102 PEIGAPSTMDSEGRIITLEFDNFYLTQVYTPNAG--DGLKRLAERQIWDEKYRDYLLELD 159
Query: 207 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+H EID++HP + PGFT ER+ F +L
Sbjct: 160 AKKPVIATGDYNVAHFEIDLAHP---------------NNNRNSPGFTDEERQGFTNLLS 204
Query: 266 EGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H + + +SW + K RIDYFI SE + D+I A EM
Sbjct: 205 AG-FTDTFRHVHGQ--VPNVYSWWAQRSKTSKINNAGWRIDYFIASERIADKICASEMID 261
Query: 324 HGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 262 SGAR------QDHTPILLEI 275
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 152/313 (48%), Gaps = 73/313 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F +F + D+ +QE ++ + EL D
Sbjct: 1 MKLVSWNVNGIRACVKKG---FLDFFMEENADIFCIQESKLQ--------EGQIELNLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A+ K Y+GTA+ K+ +P VS+ + +
Sbjct: 49 --------------------GYHQYWNYAEKKGYSGTAVFTKE--KPLYVSYGIAGRETE 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR + EFE FYLLN Y PN+ K + R +W+ I+E++L+ KP+I CGD
Sbjct: 87 PEGRSLTLEFENFYLLNVYTPNS--KRDLARLPYRLEWEDEIREYILELEQKKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H +ID+ + + + G GFT ER + ++L EG +D++R+
Sbjct: 145 LNVAHLDIDLKNA---------------RSNRGNSGFTDEERGKMTSLLSEG-FVDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELEGF 331
L+ E++ + WS + R RIDYFIVS++LK+ I I C++
Sbjct: 189 LYPEQEGAYTW-WSYMAKVRERNIGWRIDYFIVSDKLKEHILDSKIYCDIM--------- 238
Query: 332 YGSDHCPVSLELS 344
GSDHCP+ LE++
Sbjct: 239 -GSDHCPIMLEMA 250
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ +G D
Sbjct: 1 MKLISWNVNGLRAVITKG--GFLEYLEESNADIFCLQEIKL-QSGQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+I+CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F IL+EG +D YR
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRH 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + + +SW +G R K + R+DYF+VS+ +K +I ++ I G
Sbjct: 190 LY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSDRIKGQITDAKINSEII------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|325913687|ref|ZP_08176049.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
gi|325477046|gb|EGC80196.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
Length = 275
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 145/321 (45%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ VS
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VS 98
Query: 152 FSL------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ L +GR+I EF +FYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNSGWRIDYYLVSQRLADKIEQSKMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|395849480|ref|XP_003797352.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Otolemur
garnettii]
Length = 318
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 162/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P Q+L P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPTELQDL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDKFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLTSQKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARAKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 148/308 (48%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L +K + + N I + DV ALQE+++ + G D
Sbjct: 1 MKLVSWNVNGLRAVIKKGFVDSFNEI---NADVFALQEIKL-SEGQLDFE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y+++++ A K Y+GTA+ + +P VS+ +
Sbjct: 47 ------------------LEGYKMYYNYAQRKGYSGTAIFTR--IEPISVSYGIGMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
T+GRVI AEFE FY + Y PN+ K + R W+ + ++ + KP++ CGD
Sbjct: 87 TEGRVITAEFEKFYFVTCYTPNS--KRGLERLEYRMVWEDVFRNYLNKLRETKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+++P N ++ GFT ER +F +LK G ID +R+
Sbjct: 145 LNVAHEEIDLANP------------ATNHKN---AGFTNEERSKFTELLKSG-YIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ + + WS + R RIDYF+VSEELK + ++ + GSD
Sbjct: 189 FYPDRKDEYSW-WSNFAKSRERNIGWRIDYFVVSEELKGNLSDAKIH------QSVMGSD 241
Query: 336 HCPVSLEL 343
HCPV L L
Sbjct: 242 HCPVELVL 249
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 147/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+E+D+ +P K + PGF+ ER++F +L+ G ID YR+
Sbjct: 146 LNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF++SE LK +I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 148/310 (47%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F N D D LQE +M
Sbjct: 1 MKFISWNVNGLRACVG---KDFENQFKELDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L F+ Y+ +W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 39 ---QEGQLDLQ-------FEGYESYWNYAEKKGYSGTAIYTKH--KPLNVSYGMGVEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GR+I E++ FYL+ Y PN+ + E R W+ ++F+ K P+I CGD
Sbjct: 87 HEGRIITLEYDQFYLVTCYTPNS--QTELKRLDYRMTWEDDFRKFLKSLDAKKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER++ +L +G D++R+
Sbjct: 145 LNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTVLLNDG-FTDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
LH + + +S WS + + RIDYF+VS+ +K++I ++ + GS
Sbjct: 189 LHPD---EVTYSWWSYRFKAREKNAGWRIDYFLVSDRIKEQITEAKIHTEIM------GS 239
Query: 335 DHCPVSLELS 344
DHCPV ++L+
Sbjct: 240 DHCPVEVDLT 249
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K R +W+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER++F L EG +D YR+
Sbjct: 146 LNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTLAL-EGGFVDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + + +SW +G R K + R+DYF+VSE +K +II ++ + G
Sbjct: 190 LY--PNQEGAYSWWSYLMGA-RAKNIGWRLDYFVVSERIKGQIIDAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|312873321|ref|ZP_07733376.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
gi|311091201|gb|EFQ49590.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
Length = 275
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 145/321 (45%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ VS
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VS 98
Query: 152 FSL------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ L +GR+I EF +FYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 153/315 (48%), Gaps = 67/315 (21%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
+K K +WN N L +KNN +F++ DPDV +QE + A D PK
Sbjct: 1 RKSNFKITSWNVNGLRAWLKNN---SKSFVSKEDPDVFCIQETKCALA---DIPK----- 49
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL-- 154
E KL Y +W+ A+ K Y+G L KK +P KVS+ +
Sbjct: 50 --------EAKL-----------AGYHCYWNSAEQKGYSGVGLCSKK--EPIKVSYGMGN 88
Query: 155 --EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 211
+GRVI AE+E F+L+ +Y PN+G + R++W+K ++ + KP+I
Sbjct: 89 KEHDKEGRVITAEYEDFHLVTSYVPNSGRGLPRLGY--RQQWNKDFLSYLKKLDEIKPVI 146
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
CGDLNV+H++ID+++P K + GFT ER F +L EG D
Sbjct: 147 LCGDLNVAHKDIDLANP---------------KTNTRTAGFTKEERADFTTLLGEG-FKD 190
Query: 272 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELE 329
+R L+ +K F WS +G R K + R+DYF+VS+ L ++ C+ I
Sbjct: 191 TFRELYPDKKSAYTF-WS--YMGGARAKNVGWRLDYFVVSDRLVPKV--CD----SIIRS 241
Query: 330 GFYGSDHCPVSLELS 344
GSDHCP+SL LS
Sbjct: 242 RVMGSDHCPLSLLLS 256
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 146/311 (46%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+E+D+ +P K + PGF+ ER++F +L+ G ID YR+
Sbjct: 146 LNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW +G R K + R+DYF++SE LK +I ++ G
Sbjct: 190 LY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSE------IMG 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 146/314 (46%), Gaps = 60/314 (19%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E +++ +K ++WN + F+ ++ +PDV+ LQE ++ N
Sbjct: 97 EPKVEENQMKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKI----------N 143
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+K D K Y+ + AD K + GT +L KK +P ++F
Sbjct: 144 PSNIKKDQMP-----------------KGYEYHFIEADQKGHHGTGVLTKK--KPNAITF 184
Query: 153 SL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG- 207
+ +GRVI E++ FY++NTY PN G + + R ++WD Q ++ + +
Sbjct: 185 GIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNAT 244
Query: 208 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 267
KP+IWCGDLNV+H EID+ +P K + GFTI ER F L++G
Sbjct: 245 KPIIWCGDLNVAHTEIDLKNP---------------KTNKKSAGFTIEERTSFSNFLEKG 289
Query: 268 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
+D+YR + K+ F WS G+ + R+DYF+VS+ L D I +
Sbjct: 290 -YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV- 346
Query: 328 LEGFYGSDHCPVSL 341
GSDHCP+ +
Sbjct: 347 ----MGSDHCPIGV 356
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F ++ D D+ LQE ++
Sbjct: 1 MKFISWNVNGLRAAVKKG---FMDYFNEADADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E ++ L Y +W+ A K Y+GTA+ KK +P +V + L
Sbjct: 39 ---QEGQIEL-------DLNGYYDYWNYAVKKGYSGTAIFTKK--EPLRVFYGLSVAEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI EFE FY + Y PN+ + E R +++ +V KP+I+CGD
Sbjct: 87 QEGRVITLEFEQFYFITVYTPNS--QPELARLAYRMSFEEAFLNYVKNLDQEKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + PGF+ ER +F +L+ G +D +R
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNPGFSDEERGKFTTVLESG-FVDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ EK+ + WS + R RIDYF+VS L+D++I ++ + GSD
Sbjct: 189 FYPEKEGAYSW-WSYRMNARARNTGWRIDYFVVSSRLRDKLIDAKIHADVL------GSD 241
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 242 HCPVELTI 249
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 153/310 (49%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F ++ DV +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVTADVFCIQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---T 157
+ + Y +W+ A K Y+GTA+ K+ +P VSF ++K
Sbjct: 46 Q-----------------LEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSFGVDKELED 86
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I CGDL
Sbjct: 87 EGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNSRKAVILCGDL 144
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P+ PN+ G GFTI ER + +L G +D +R+L
Sbjct: 145 NVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLASG-FLDTFRYL 188
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + + ++W + + K R + + RIDYFIVSE +KD I + H + GS
Sbjct: 189 YPNQ--EGAYTW-WSYMNKVRERNIGWRIDYFIVSERIKDVIQEAAIHPHVM------GS 239
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 240 DHCPVMLELN 249
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 148/315 (46%), Gaps = 71/315 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + L VK N +I DPD+I LQE + KD PK
Sbjct: 14 LKIASWNVDGLRGTVKKNG---HAYIPQEDPDIICLQETK---CTEKDVPKEFTA----- 62
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ + Y W+S + K YAGTALL K +P KV++ +
Sbjct: 63 --------------TVEGYHGY--WYSPTEKKGYAGTALLSKT--KPIKVTYGIGVDEHD 104
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI AEF+ FY++ Y PN G R WD+ ++ + KP++ CGD
Sbjct: 105 DEGRVITAEFDDFYMVTAYVPNAG--RGLVRLDYRGTWDEAFTAYLKKLDKKKPVVLCGD 162
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P+ NK PGFT ER+ F +L EG D+YR
Sbjct: 163 LNVAHNEIDLKNPK------------GNKNK--TPGFTDKEREGFTTLLDEG-FKDSYRE 207
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSE----ELKDRIIACEMQGHGIELE 329
L+ E + DC WS +G R K + R+DYF++S+ +L D +I E+
Sbjct: 208 LYPE-ETDCYTFWS--YMGGARAKNVGWRLDYFVLSDRLMPQLCDNVIRSEVM------- 257
Query: 330 GFYGSDHCPVSLELS 344
GSDHCP+ L L+
Sbjct: 258 ---GSDHCPIVLLLA 269
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 137/307 (44%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + DV LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADVFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ +
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVSYGIGIEEHDN 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI E YL+ Y PN K R W+ + F+L KP++ CGDL
Sbjct: 88 EGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAWEDSFRAFLLDLRAKKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GFT ER +FG +L G +D +R L
Sbjct: 146 NVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVDTFRAL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K + WS + RIDYF+VSEEL+DRI A E+ +GSDH
Sbjct: 190 YPDKTGAYTW-WSYLRHARETNAGWRIDYFLVSEELRDRISAAEIHAD------VFGSDH 242
Query: 337 CPVSLEL 343
CPVSL L
Sbjct: 243 CPVSLTL 249
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 155/317 (48%), Gaps = 65/317 (20%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
++N ++ +KF++WN N + V F ++ D D+ LQE ++
Sbjct: 32 QKNRRRIGMKFISWNVNGIRACVNKG---FLDYFHAADADIFCLQETKL----------- 77
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P VS+
Sbjct: 78 -----------QEGQLAL-------DLEGYFQYWNYAEKKGYSGTAVFTKE--EPLSVSY 117
Query: 153 SL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG- 207
L +GRVI E+ETFY + Y PN+ + E R +W+ + ++
Sbjct: 118 GLGIEAHDQEGRVITLEYETFYFVTVYTPNS--QSELKRLDYRMEWEDDFRAYLTGLDRE 175
Query: 208 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 267
KP+I CGD+NV+H+EID+ +P+ N+++ GFT ER++F +L G
Sbjct: 176 KPVIVCGDMNVAHQEIDLKNPK------------TNRKN---AGFTDEERQKFTELLDSG 220
Query: 268 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
ID +R+ + +++ + WS + + RIDYF+VS+ LKDR+ ++ +
Sbjct: 221 -WIDTWRYFYPDQEGVYSW-WSYRFKAREKNAGWRIDYFLVSDRLKDRLTDAKIHTEVM- 277
Query: 328 LEGFYGSDHCPVSLELS 344
GSDHCPV L+L+
Sbjct: 278 -----GSDHCPVELDLN 289
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 143/310 (46%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L F++ D D LQE +M A G D
Sbjct: 2 LKLISWNVNGLRACYDKG---FTDIFRQLDADFFCLQETKMQA-GQLDLQ---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
F YQ +W+ A+ K Y+GTA+ + QP VS+ +++T+
Sbjct: 48 ------------------FDGYQSYWNYAEKKGYSGTAVFTR--LQPISVSYGMDRTEHD 87
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
GR+I E E F+L+N Y PN+ +E + R W+ F+ Q + KP+I CGD
Sbjct: 88 REGRIITLEMEDFFLVNVYTPNS--QEGLKRLEYRMTWEDDFLHFLKQLKTQKPVIVCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G D +R+
Sbjct: 146 LNVAHQEIDLKNP---------------KTNRKNAGFTDEERYKFTQLLSAG-FTDTFRY 189
Query: 276 LH-KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ +KD+ +S WS + + RIDYF+ S L +++ + ++ +G
Sbjct: 190 FYPNQKDI---YSWWSYRFKAREKNAGWRIDYFLASASLNEKLCSAKIHTE------IFG 240
Query: 334 SDHCPVSLEL 343
SDHCPV LE+
Sbjct: 241 SDHCPVELEI 250
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 145/310 (46%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VKN F +F T + DV +QE ++
Sbjct: 1 MKLISWNVNGLRACVKNG---FLDFFTKENADVFCIQETKI------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL---- 154
+EE++ PF+ Y +W+ A K Y+GTA+ K +P VS+ +
Sbjct: 39 ---QEEQI---------PFQLDGYYSYWNFAQKKGYSGTAIFSKT--EPINVSYGIGMEE 84
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
+GRVI E+E F+L+ Y PN+ + R KW+ ++ KP+I+C
Sbjct: 85 HDQEGRVITLEYEPFFLVTVYTPNS--QRGLARLDYRMKWEDDFLAYLKTLEKSKPIIFC 142
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H+EID+ +P+ NK++ GFT ER +F +L G ID++
Sbjct: 143 GDLNVAHQEIDLKNPK------------TNKKN---AGFTSEERDKFSQVLNHG-FIDSF 186
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
RF + E+ D WS + RIDYF VS LKD++ + YG
Sbjct: 187 RFFYPEQ-RDAYTWWSYMFNARANNAGWRIDYFCVSAGLKDQLKNVSI------YSDVYG 239
Query: 334 SDHCPVSLEL 343
SDHCPV LE+
Sbjct: 240 SDHCPVGLEV 249
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 145/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK F +F D D+ LQE ++ + EL+
Sbjct: 1 MKLISWNVNGIRACVKKG---FLDFFKETDADIFCLQETKLQ--------EGQIELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 47 ------------------LEGYHQYWNYAERKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ FY++ Y PN+ K E R W+ + ++L+ + KP+I CGD
Sbjct: 87 QEGRVITLEFDNFYMVTVYTPNS--KNELLRLDYRMVWEDEFRSYLLRLNETKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFTI ER + +L G ID +RF
Sbjct: 145 LNVAHQEIDLKNP---------------KTNQKNAGFTIEERTKMSTLLDSG-FIDTFRF 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E ++ +S WS + RIDYF+ S+ELK+ + ++ + GS
Sbjct: 189 FYPE--LEGAYSWWSYRFNARKNNAGWRIDYFLTSQELKENLKDAKIHSDIL------GS 240
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 140/306 (45%), Gaps = 65/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F+ D D +QE +M K
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAEIFQKLDADFFCIQETKMQEGQLK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
L P ++ Y ++ A+ K Y+GTA+ K +P VS+ ++
Sbjct: 45 -------------LDLPGYRQY---FNYAERKGYSGTAIFAKD--EPLTVSYGIQAPEFD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S KP+I CGD
Sbjct: 87 HEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P+ + GFT ER+ F +L +G +D +R
Sbjct: 145 LNVAHYEIDLKNPQ---------------SNHHNAGFTDEERQSFTKLLDQG-FMDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ D WS + R RIDYF+ S+ L D I ++ L +GSD
Sbjct: 189 FYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKI------LTDIFGSD 241
Query: 336 HCPVSL 341
HCPV L
Sbjct: 242 HCPVEL 247
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 151/322 (46%), Gaps = 65/322 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVNKG---FIDYFKASDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+E I + S Y+ +W+ A+ K Y+GTA+ + +P V + +E+
Sbjct: 39 ----QEGQICLELGES-----YRQYWNYAEKKGYSGTAVFTR--IEPLSVRYGMEEDREP 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GR+I EFE+FYL+ Y PN K + + + R +W++R + ++ + KP+I CGDL
Sbjct: 88 EGRMITLEFESFYLVTVYTPNA--KRDLSRLEYRLEWEERFRRYLQELDARKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+E+D+ + K + G GFT ER + +L G D +R
Sbjct: 146 NVAHQEMDLKNA---------------KSNHGNSGFTPEERDKMTRLLDAG-FTDTFR-- 187
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H+ D ++ WS P + R RIDYF+VS LK+ I E+ GSD
Sbjct: 188 HRYPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLKEYIKDAEIDA------AITGSD 241
Query: 336 HCPVSLELSEASSDSEKREKKN 357
HCPV LE+ + +S KR + N
Sbjct: 242 HCPVILEMEDLPVESPKRGEHN 263
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 138/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 6 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+E + I L P ++ Y ++S Y+GTA+ + +P V++ L
Sbjct: 44 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVAYGLGIEEHDH 92
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI EFE YL+ Y PN+ K R W+ + F+L KP++ CGDL
Sbjct: 93 EGRVITMEFEDIYLVTVYTPNS--KNALARLDYRLVWEDAFRAFLLDLRAKKPVVVCGDL 150
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GFT ER + +L G ID +R L
Sbjct: 151 NVAHTEIDLKNP---------------KSNRRNAGFTDEERGKLTELLGAG-FIDTFRAL 194
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D+ ++ WS + RIDYF+VSEEL+DRI A E+ +GSD
Sbjct: 195 Y--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------VFGSD 246
Query: 336 HCPVSLEL 343
HCPVSL L
Sbjct: 247 HCPVSLTL 254
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 148/308 (48%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L ++WN N + V+N F +F+ + PD++ALQE++ A + P
Sbjct: 3 LLLISWNVNGIRACVRNG---FLDFLEKYKPDILALQEIK---ATEDNVP---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
+ + +Y +W+ A K YAGTAL K +P V F + +
Sbjct: 47 -------------MEVRYYPDYHKYWNPAKKKGYAGTALFTK--IEPLNVKFGIGEDKFD 91
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
++GRVI AE+E FYL+N Y PN+ + + ++DK I ++ + KP+I CGD
Sbjct: 92 SEGRVITAEYEKFYLVNAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILCGD 149
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
NV+H+EID+++P K++ GFT ER L++G ID +R
Sbjct: 150 FNVAHKEIDLANP---------------KQNVKNAGFTPQERAWMDKFLQDG-YIDTFRM 193
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
KE W+ + R R+DYF+VSEELKD++ + + L YGSD
Sbjct: 194 FTKEGGHYTW--WTYRFKARERNIGWRVDYFVVSEELKDKVKSSWI------LSEVYGSD 245
Query: 336 HCPVSLEL 343
H P+++ L
Sbjct: 246 HAPIAMVL 253
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 144/312 (46%), Gaps = 69/312 (22%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
D K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 7 DMKKMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE----------- 52
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL---- 154
L P + +Y W+ A K Y+G A+ K +P V++ +
Sbjct: 53 ---------------LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGIGIEE 92
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
+GRVI AE+E FY++ Y PN+ + + R W+ +++L+ KP+I+C
Sbjct: 93 HDNEGRVITAEYEDFYMITCYTPNS--QRGLTRLEYRMTWEDAFLKYILELEKNKPVIFC 150
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H EID+ +P K + GFT ER + IL G +D++
Sbjct: 151 GDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKMDVILSSG-FVDSF 194
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 331
R L+ +K +SW + +G R K + RIDYFIVS +LKDRI ++
Sbjct: 195 RVLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSE------I 245
Query: 332 YGSDHCPVSLEL 343
+GSDHCPV L++
Sbjct: 246 FGSDHCPVELDI 257
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 145/308 (47%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ + D+ LQE ++ QE + +
Sbjct: 2 MKLISWNVNGLRACVNKG---FYDYFKEANADIFCLQETKL------------QEGQIEM 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+ E Y +W+ A+ K Y+GTA+ + +P V + LE+
Sbjct: 47 EIGEE----------------YHQYWNYAEKKGYSGTAVFTR--MEPLSVRYGLEEDHEP 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
+GRVI EF+ FYL+ Y PN K + + R +W+ R + ++LQ K P++ CGDL
Sbjct: 89 EGRVITLEFQDFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRNYLLQLDAKKPVVVCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K + GFT ER++ ++L G +D YR+
Sbjct: 147 NVAHQEIDLKNA---------------KSNRNNSGFTPEEREKMTSLLAAG-FVDTYRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS P + R RIDYF+ SE L A + G GI+ + GSDH
Sbjct: 191 YPDQ-TDAYTWWSFMPKVRERNIGWRIDYFLASERL-----APSLLGAGIDSQVL-GSDH 243
Query: 337 CPVSLELS 344
CPV LE
Sbjct: 244 CPVVLEFG 251
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 145/317 (45%), Gaps = 63/317 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L R N F + + D DV +QE ++ A
Sbjct: 1 MKFVSWNVNGL--RACVNKGAFLPYFESVDADVFCVQETKLQAG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+ P + YQ +W+ A+ K Y+GTA+ + P V +
Sbjct: 43 ------------QIQLPIGEAYQQFWNYAERKGYSGTAVFTR--MPPLDVRYGFGNGVDP 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GR+I EF +FY++ Y PN K + + R +W+ + ++ KP+I CGDL
Sbjct: 89 EGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFRAYLCALDREKPVIACGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K + G GFT ER + +L G +D +R L
Sbjct: 147 NVAHQEIDIKNA---------------KSNRGNSGFTDEERAKMTELLDAG-FVDTFRAL 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ + D WS P + R RIDYF+VSE L+D I+ + H + GSDH
Sbjct: 191 YPDV-TDKYTWWSNMPRVRERNIGWRIDYFLVSERLRDCILDARIDDHVL------GSDH 243
Query: 337 CPVSLELS-EASSDSEK 352
CPV LE++ EA DS K
Sbjct: 244 CPVVLEMALEAWKDSGK 260
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 150/308 (48%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L ++WN N + V+N F +F+ + PD++ALQE+
Sbjct: 3 LLLISWNVNGIRACVRNG---FLDFLEKYKPDILALQEI--------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
KA+ + I +R + +Y +W+ A K YAGTAL K +P + F + +
Sbjct: 39 KATEDNIPIEVRY-----YPDYHKYWNPAKKKGYAGTALFTK--IEPLNIKFGIGEDKFD 91
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
++GRVI AE+E FYL+N Y PN+ + + ++DK I ++ + KP+I CGD
Sbjct: 92 SEGRVITAEYEKFYLVNAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILCGD 149
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
NV+H+EID+++P K++ GFT ER L++G ID +R
Sbjct: 150 FNVAHKEIDLANP---------------KQNVKNAGFTPQERAWMDEFLQDG-YIDTFRM 193
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
KE W+ + R R+DYF+VSEELKD++ + + L YGSD
Sbjct: 194 FTKEGGHYTW--WTYRFKARERNIGWRVDYFVVSEELKDKVKSSWI------LSEVYGSD 245
Query: 336 HCPVSLEL 343
H P+++ L
Sbjct: 246 HAPIAMVL 253
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 140/313 (44%), Gaps = 42/313 (13%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNH 94
N+ LK +WN N L +K + P F++ ++ D D++ LQE ++ + D P H
Sbjct: 3 NTASRTLKLASWNVNGLRAVLKKD-PSFTDIVSELDADILGLQETKLQEGQVEIDLPGYH 61
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 154
Q + + R P LA + AG L + V+
Sbjct: 62 QVWSYAERKGYSGTAVFTR---DEPLSVRHADAVLAAGRAAG---LTDDQLELVAVA--- 112
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLI 211
T+GRV EFE F+ ++ Y PN + E R WD + F+L +GKP++
Sbjct: 113 -ATEGRVCALEFERFWFVDVYTPNA--QGELARLDTRMAWDDAYRAFLLSLEDETGKPVV 169
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
CGD NV+H EID+ +P K + G GF+ ER +F +L G D
Sbjct: 170 TCGDFNVAHNEIDLKNP---------------KSNRGNAGFSDEERSKFVELLDAG-YTD 213
Query: 272 AYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 330
+R D++ +S WS + RIDYF+VS+ + DR+ A ++
Sbjct: 214 TFR--AANPDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDSIADRVRATGIRSD------ 265
Query: 331 FYGSDHCPVSLEL 343
+GSDHCPV+LE+
Sbjct: 266 IFGSDHCPVTLEI 278
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 144/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L + F FD D LQE+++ QE + D
Sbjct: 1 MKFVSWNVNGLRAAREKG---FDEIFKNFDADFFCLQEIKL------------QEGQIDM 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
Y +W+ A K Y+GTA+ + +P V + L K
Sbjct: 46 DMD-----------------GYYSYWNYAKRKGYSGTAIFTR--IEPIDVFYGLGKEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GR+I E+ FY+ Y PN+ K+E R++W+ +EF K P+I CGD
Sbjct: 87 DEGRLITLEYPEFYVSTVYTPNS--KQELLRLDYRQEWEDEFREFFKNLDAKKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + PGFT ER++F +L G D +R+
Sbjct: 145 MNVAHKEIDLKNP---------------KTNRKNPGFTDEEREKFTLLLDAG-FTDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ + + WS + RIDYF+VS+ L++++ A + + +GSD
Sbjct: 189 FYPDKENEYSW-WSYRFNARKNNTGWRIDYFLVSDRLQEKLTAASIH------QDVFGSD 241
Query: 336 HCPVSLELS 344
HCPVS+ELS
Sbjct: 242 HCPVSVELS 250
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ + ++ N I D D+ +QE ++ + EL+
Sbjct: 1 MKLVSWNVNGLRACVRKGFLDYFNEI---DADIFCIQETKLQ--------EGQIELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
Y +W+ A+ K Y+GTA+ K F+P V + L +
Sbjct: 47 ------------------LNGYHQYWNYAEKKGYSGTAVFTK--FKPISVKYGLSNEESQ 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GR++ EFE F+L+N Y PN+ + + R +W+ + E VL KP++ CGD
Sbjct: 87 VEGRILTLEFENFFLINVYTPNS--QRDLARLDVRLEWEDVLLEHVLAHDRIKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ + K ++G GFT ER++ L G ID R+
Sbjct: 145 LNVAHREIDIRNY---------------KSNYGNSGFTDEEREKMTRFLNAG-FIDTLRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H + + + WS + R RIDYFIVSE L++++I + +GSD
Sbjct: 189 FHPDTEGIYTW-WSYMKTVRERNIGWRIDYFIVSERLREKLIDSKAD------TAIFGSD 241
Query: 336 HCPVSLELS 344
HCP+ L++S
Sbjct: 242 HCPIVLDIS 250
>gi|367462704|gb|ADJ96599.2| DNA repair enzyme APEX-1 [Camelus dromedarius]
Length = 318
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 165/345 (47%), Gaps = 64/345 (18%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + AL D +T+ + K LK +WN + L +K + +
Sbjct: 31 KKTEKEAAGEGAALYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 82
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE TK S + ++ LS P +Q
Sbjct: 83 WVKEEAPDILCLQE---------------------TKCSENKLPPELQELSGLP---HQY 118
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNG 180
W + +D + Y+G LL ++C P KVS+ + +GRVI+AEF+ F L+ Y PN G
Sbjct: 119 WSAPSDKEGYSGVGLLSRQC--PIKVSYGIGEEEHDQEGRVIVAEFDAFVLVTVYVPNAG 176
Query: 181 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 239
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 --RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG--------- 225
Query: 240 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 299
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 ---NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNV 278
Query: 300 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 279 GWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 142/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N L + F +F D D+I LQE+++ + D P
Sbjct: 1 MKFVSWNVNGLRAVMGKG---FMDFFDGIDADIIGLQEIKLSEGQLEWDKP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
Y +W+ A+ K Y+GTA+ KK +P VS+ +
Sbjct: 49 ---------------------GYHAYWNYAEKKGYSGTAVFTKK--EPISVSYGIGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GRVI EFE FY + Y PN+ + E R W+ + ++ + + K +I CG
Sbjct: 86 DHEGRVITLEFEDFYFITCYTPNS--QNELKRLDYRMTWEDDFRAYLQKLNEKKGVILCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ +P K + GFT ER + +L G +D++R
Sbjct: 144 DLNVAHEEIDIKNP---------------KTNRHNAGFTDEERAKMTELLSAG-FVDSFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + ++ D WS + + RIDYFIVSE++KDR+ ++ + GS
Sbjct: 188 YFYPDQ-TDIYSWWSYRFKAREKNAGWRIDYFIVSEDIKDRMKDSKIHTDVM------GS 240
Query: 335 DHCPVSLEL 343
DHCP+ L+
Sbjct: 241 DHCPIELDF 249
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 150/308 (48%), Gaps = 64/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F ++ + DV +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVNADVFCIQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---T 157
+ + Y +W+ A K Y+GTA+ K+ +P VS+ ++K
Sbjct: 46 Q-----------------LEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSYGVDKESED 86
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I CGDL
Sbjct: 87 EGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLNKLNSRKAVILCGDL 144
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P+ PN+ G GFTI ER + +L G +D +R+L
Sbjct: 145 NVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLASG-FLDTFRYL 188
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ + WS + R RIDYFIVSE +KD I + H + GSDH
Sbjct: 189 YPNQE-EAYTWWSYMNKVRERNIGWRIDYFIVSERIKDVIQEATIHPHVM------GSDH 241
Query: 337 CPVSLELS 344
CPV LEL+
Sbjct: 242 CPVMLELN 249
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 163/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT E + FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQEAQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 148/309 (47%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F F+ D LQE +M AG D
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKDFNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
LS P +++Y W+ AD K Y+GTA+ + +P V++ ++
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTRH--KPLSVTYGIDIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E + FYL+ Y PN+ ++E + R KW+ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEMDDFYLVTVYTPNS--QDELRRLEYRMKWEDDFQSYLHKLDEIKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLSNG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++SE L+DR++ ++ + GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLRDRLVDAKIHTEIM------GS 239
Query: 335 DHCPVSLEL 343
DHCP+ ++L
Sbjct: 240 DHCPIEIDL 248
>gi|429735837|ref|ZP_19269760.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156761|gb|EKX99382.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ +
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--LKPLSVSYGIGIEEHDN 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI EFE YL+ Y PN+ K R W+ + F+L KP++ CGDL
Sbjct: 88 EGRVITMEFEDVYLVTVYTPNS--KNGLLRLDYRMVWEDAFRAFLLDLRAKKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GFT ER +F +L G +D +R L
Sbjct: 146 NVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLAAG-FVDTFRAL 189
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D+ ++ WS + RIDYF+VSEEL+DRI A E+ +GSD
Sbjct: 190 Y--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------VFGSD 241
Query: 336 HCPVSLEL 343
HCPVSL L
Sbjct: 242 HCPVSLTL 249
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N + F +F D DV LQE ++ +
Sbjct: 1 MRFISWNVNGIRACAGKG---FLDFFKEVDADVFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P + Y W+ A+ K Y+GTA+ KK +P KV + +
Sbjct: 45 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I CGD
Sbjct: 87 KEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++F +L G ID YR+
Sbjct: 145 MNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ + WS + RIDYF S++L+DR+I+ ++ + GSD
Sbjct: 189 FNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLISADIHTEVL------GSD 241
Query: 336 HCPVSLEL 343
HCPV LE+
Sbjct: 242 HCPVELEI 249
>gi|417409485|gb|JAA51243.1| Putative exodeoxyribonuclease iii, partial [Desmodus rotundus]
Length = 301
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D T+ + K LK +WN + L +K + +++
Sbjct: 17 EKEATGEGSVLYEDPPDKNTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 68
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 69 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 104
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G +L ++C P KVS+ + +GRVI+AE++ F L+ Y PN G
Sbjct: 105 PSDKEGYSGVGILSRQC--PLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG--R 160
Query: 184 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 161 GLVRLEYRQRWDEAFRKFLKGVASHKPLVLCGDLNVAHEEIDLRNPK------------G 208
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L+D++R L+ F W+ + + R
Sbjct: 209 NKKN---AGFTPQERQGFGELLQAVPLVDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 264
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF+VS L + +++ + GSDHCP++L L+
Sbjct: 265 LDYFLVSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 300
>gi|402836561|ref|ZP_10885097.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
gi|402271037|gb|EJU20293.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
Length = 249
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 141/308 (45%), Gaps = 66/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N +K F + D D LQE +M + P+ + E
Sbjct: 1 MKFISWNVNGFRAVLKKG---FEDVFKDLDADFFCLQETKMQEGQADFHPEGYHE----- 52
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---KT 157
++S AD K Y+GTA+ K+ P +V++ +E
Sbjct: 53 ------------------------YYSYADKKGYSGTAIFAKEA--PLRVAYGIEGKHND 86
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI E++ FYL+ Y PN+ ++E R +++ ++ ++ + KP+++CGDL
Sbjct: 87 EGRVITLEYDDFYLICAYVPNS--QDELKRIDYRMEYEDDLRAYMSKLDKVKPVVYCGDL 144
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ +P K + G GF+ ER + +L G D YR L
Sbjct: 145 NVAHEEIDLKNP---------------KSNRGNAGFSDEERSKMTELLGAG-FTDTYRHL 188
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H D +S WS + RIDYFIVS L+ +I + L YGSD
Sbjct: 189 H--PDTPGVYSWWSYRFNARANNAGWRIDYFIVSNRLETKIKEAAI------LTDVYGSD 240
Query: 336 HCPVSLEL 343
HCPVSL L
Sbjct: 241 HCPVSLVL 248
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 147/309 (47%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V+ F ++ + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRAAVQKG---FLDYFKNENADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E ++ L + Y +W+ A+ K Y+GTA+ KK +P +VS+ L
Sbjct: 39 ---QEGQIEL-------ELEGYHQYWNYAEKKGYSGTAIFTKK--KPIEVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E++ FY++ Y PN+ +EE R W+ + +V++ KP+I CGD
Sbjct: 87 KEGRVITLEYDDFYMITVYTPNS--QEELARLSYRMSWEDEFRNYVMKLDKLKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER +F +LK G +D++R
Sbjct: 145 LNVAHQEIDLKNP---------------KSNRKNAGFSDEERAKFTELLKNG-FVDSFRH 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E + +S WS + RIDYF+VSE LKD + E+ + GS
Sbjct: 189 FYPE--LTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNETL------GS 240
Query: 335 DHCPVSLEL 343
DHCPV L+L
Sbjct: 241 DHCPVVLKL 249
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 138/307 (44%), Gaps = 42/307 (13%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
LK +WN N L +K + P F++ + D D++ LQE ++ + D P HQ
Sbjct: 9 LKLASWNVNGLRAVLKKD-PSFTDIVAELDADILGLQETKLQEGQVELDLPGYHQVWSYA 67
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGR 160
+ + R P LA + AG + + ++ T+GR
Sbjct: 68 ERKGYSGTAVFCR---EEPLSVRHADAVLAAGRAAGLS-------DDELELVAVAATEGR 117
Query: 161 VILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLN 217
V EFE F+ ++ Y PN + E R WD + F+ +GKP++ CGD N
Sbjct: 118 VCALEFERFWFVDVYTPNA--QGELARLSTRMAWDDAYRAFLRSLEDETGKPVVTCGDFN 175
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H EID+ +P K + G GF+ ER +FG +L G D +R
Sbjct: 176 VAHNEIDLKNP---------------KSNRGNAGFSDEERAKFGELLDAG-YTDTFR--A 217
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+++ +S WS + RIDYF+VS+ + DR+ AC ++ +GSDH
Sbjct: 218 ANPNLEGAYSWWSYRFNARKNNAGWRIDYFLVSDAIADRVRACGIRND------IFGSDH 271
Query: 337 CPVSLEL 343
CPV+LE+
Sbjct: 272 CPVTLEI 278
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 145/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V EF D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGK---EFEQQFKDLDADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
LS P +++Y W+ AD K Y+GTA+ K +P V++ ++
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIYTKH--KPLSVTYGIDIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E E FYL+ Y PN+ ++ + R KW+ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEMEDFYLVTVYTPNS--QDGLRRLEYRMKWEDDFQAYLHKLDEKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHQEIDLKNP---------------KTNHKNAGFTDEEREKMTQLLSNG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++SE LKDR+ ++ + GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIM------GS 239
Query: 335 DHCPVSLEL 343
DHCPV + L
Sbjct: 240 DHCPVEIIL 248
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 143/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +FS + + D LQE +M A EL+
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFESLNADFFCLQETKMQAG--------QLELQ--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y +W+ A+ K Y+GTA+ +K +P VS+ +
Sbjct: 47 ------------------FPGYTSYWNYAEKKGYSGTAIYTRK--EPLAVSYGIGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI E++ F+L+ Y PN +EE R W+ Q ++ Q K P+I CGD
Sbjct: 87 HEGRVITLEYDKFFLVTVYTPNA--QEELRRLDYRMTWEDAFQAYLHQLDAKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER + +L G D +R
Sbjct: 145 MNVAHQEIDLKNP---------------KTNRRSAGFTDEERSKMTQLLSNG-FTDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
LH E+ +S WS + + RIDYF++S+ L+ +++G I E YGS
Sbjct: 189 LHPEQ---ITYSYWSYRFRAREKNAGWRIDYFLISDRLRP-----QLKGASIHTE-IYGS 239
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 240 DHCPVELDI 248
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 137/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMEAFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+E + I L P ++ Y ++S Y+GTA+ + +P V++ +
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVAYGIGIPEHDH 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI EF YL+ Y PN K R W+ + F+L KP++ CGDL
Sbjct: 88 EGRVITMEFNDVYLVTVYTPNA--KRALERLDYRMTWEDAFRAFLLDLRAKKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GFT ER +F +L G +D +R L
Sbjct: 146 NVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLNAG-FVDTFRAL 189
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D+ ++ WS + RIDYF+VSEEL+DRI A E+ +GSD
Sbjct: 190 Y--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------VFGSD 241
Query: 336 HCPVSLEL 343
HCPVSL L
Sbjct: 242 HCPVSLTL 249
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
LK+++WN N L +K F D D LQE ++ P D P
Sbjct: 4 LKYISWNVNGLRACMKKG---FMQSFKELDADCFCLQETKLQPDQIELDLPGY------- 53
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EK 156
YQ W S Y+GTAL K +P V++ +
Sbjct: 54 ----------------------YQYWNSAVKKGYSGTALFTK--IKPLSVTYGIGMEEHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI A+F L+ Y PN+ + R KW+ ++++L S K P+I CGD
Sbjct: 90 QEGRVITADFNDHCLVTCYTPNS--QRGLARLTYRMKWEDDFKKYLLDLSKKKPVILCGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+++P A+ +N GFT ER + +L +G D++R+
Sbjct: 148 LNVAHEEIDLANP---ASNHMNA------------GFTDDERNKMTELLSDG-FTDSFRY 191
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
LH++K D WS + R RIDYF+VS+ L+ RI A E+ GSD
Sbjct: 192 LHQDKK-DAYSWWSYFAKSRERNIGWRIDYFLVSDILQPRIKAAEIHS------SILGSD 244
Query: 336 HCPVSLEL 343
HCPV L++
Sbjct: 245 HCPVELDI 252
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 144/308 (46%), Gaps = 64/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L V F ++ D D LQE ++
Sbjct: 1 MKFVSWNVNGLRASVNKG---FLDYFNEMDADFFCLQETKLQEG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ KL L A Y ++W A+ K Y+GTA+ K +P +S+ L E
Sbjct: 42 ----QIKLELGEA--------YHLFWHYAEKKGYSGTAIFTKH--KPLSISYGLGEEDED 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI E+E FYL+ Y PN + + + R W++ + ++++ KP+I CGD
Sbjct: 88 TEGRVITLEYENFYLVTVYTPNA--RRDLSRLDFRLAWEEMFRGYLIKLDEHKPVIVCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H++ID+ + K + G GFT ER++ +L G ID++R+
Sbjct: 146 LNVAHQDIDLKNA---------------KSNRGNSGFTDEEREKMTRLLDAG-FIDSFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ ++ D WS P + R RIDYF+ S L I+ GI+ + GSD
Sbjct: 190 LYPDR-TDAYTWWSFMPKIRERNVGWRIDYFLASARLAPAIVEA-----GIDSQ-ILGSD 242
Query: 336 HCPVSLEL 343
HCPV L L
Sbjct: 243 HCPVVLTL 250
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| exodeoxyribonuclease III [Dorea longicatena DSM 13814]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + + F + D D+ +QE +M A + D P HQ
Sbjct: 1 MKFISWNVNGIRACAQKG---FMDIFNEADADIFCIQESKMQAGQLELDTPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKE--EPLSVSYGLGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GRVI EFE FY + Y PN+ + E R +W+ ++ + KP+I+CG
Sbjct: 86 DKEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMRWEDAFLAYLKKLEEKKPVIFCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ +P K + GFT ER +F +L G ID +R
Sbjct: 144 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTNLLNAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ + D + +S WS + + RIDYF VSE LKDRI ++ L G
Sbjct: 188 YFY--PDAEGIYSWWSYRFSARKKNAGWRIDYFCVSESLKDRIKDAKI------LTEIMG 239
Query: 334 SDHCPVSLEL 343
SDHCPV L+
Sbjct: 240 SDHCPVELDF 249
>gi|432112926|gb|ELK35512.1| DNA-(apurinic or apyrimidinic site) lyase [Myotis davidii]
Length = 320
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 161/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 36 EKEAAGEGSVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 87
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 88 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 123
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AE++ F L+ Y PN G
Sbjct: 124 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG--R 179
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 180 GLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 227
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 228 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 283
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF+VS L + +++ + GSDHCP++L L+
Sbjct: 284 LDYFLVSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 319
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 146/309 (47%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+KFV+WN N L +R K F + FD D LQE+++ +N EL
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKL--------QENQIELH-- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
F Y +W+ A+ K Y+GTA+ K +P V + L
Sbjct: 47 -------------------FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGLGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GR+I E+E +Y+ Y PN + E R+KW++ +E+ + KP+I CG
Sbjct: 86 DMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEEDFREYFKKLDEKKPVIICG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+H+EID+ +P K + PGF+ ER++F +L G ID +R
Sbjct: 144 DMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTLLLNAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +K + + WS + RIDYF VS+ LK+++ + + + GS
Sbjct: 188 YFYPDKTDEYSW-WSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIH------QDVMGS 240
Query: 335 DHCPVSLEL 343
DHCPVS+E+
Sbjct: 241 DHCPVSIEI 249
>gi|426232864|ref|XP_004010439.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Ovis aries]
Length = 318
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + ++I
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWIK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS P +Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSGLP---HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R+ WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQCWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ + F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAAPLTDSFRHLYPNRAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|358065851|ref|ZP_09152385.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
gi|356695714|gb|EHI57339.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
Length = 251
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 147/308 (47%), Gaps = 65/308 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V + E+ N + D DV +QE ++ A G D P
Sbjct: 3 KLISWNVNGLRACVGKGFLEYFNEV---DADVFCIQESKLQA-GQIDLP----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
+ Y +W+ A+ K Y+GTA+ K+ +P V++ +
Sbjct: 48 -----------------LEGYYQYWNYAEKKGYSGTAMFTKE--EPVSVAYGIGIEEHDK 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AEF +Y++ Y PN+ K+ R +W+ ++ KP+I+CGDL
Sbjct: 89 EGRVITAEFPEYYVVTCYTPNS--KDGLARLPYRMEWEDAFLAYLKGLEEKKPVIFCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GF+ ER +F +L G ID YR+
Sbjct: 147 NVAHQEIDLKNP---------------KTNRKNAGFSDEERGKFSDVLAAG-FIDTYRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K + WS + + RIDYF VSE LKDR+++ ++ +E++ GSDH
Sbjct: 191 YPDKTEVYSW-WSYRFSARAKNAGWRIDYFCVSEALKDRLVSADIH---MEVQ---GSDH 243
Query: 337 CPVSLELS 344
CPV L +S
Sbjct: 244 CPVELVIS 251
>gi|375342925|gb|AFA54864.1| exodeoxyribonuclease III [uncultured Eggerthella sp. SMG5]
Length = 261
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 145/319 (45%), Gaps = 77/319 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
++ V+WN N L +K F + D DV ALQE ++ + D P HQ
Sbjct: 1 MRLVSWNVNGLRAVMKKG---FMDAFHELDADVFALQETKLQEGQIEMDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---- 155
+WS A+ K Y+GTA+ K+ +P +V +
Sbjct: 53 -------------------------FWSYAERKGYSGTAVFCKE--EPLRVIHEVGVPEL 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR-------IQEFVL----Q 204
T+GRV++ EFE ++L+N Y PN + E R WD R ++E VL
Sbjct: 86 DTEGRVVICEFEQYWLVNVYTPNA--QSELARLDHRMAWDDRFRDICKGLEEGVLPDGQA 143
Query: 205 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
+ KP++ CGD NV+H+EID+ +P + + G PGF+ ER +F +L
Sbjct: 144 GNAKPVVMCGDFNVAHQEIDLKNP---------------RSNRGNPGFSDEERAKFTCLL 188
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
G ID +R+L+ + + WS + RIDYF+VSE L++++ +
Sbjct: 189 DAG-FIDTFRYLNPATEGAYSW-WSYRFHARANNAGWRIDYFLVSEALREKVQMANIYSE 246
Query: 325 GIELEGFYGSDHCPVSLEL 343
GSDHCPVS+EL
Sbjct: 247 ------IMGSDHCPVSVEL 259
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 148/308 (48%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F +F + D+ LQE ++ + EL+ D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDFFHEQNADIFCLQETKLQ--------EGQIELELD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS---LEKT 157
Y +W+ A K Y+GTA+ K+ +P V + LE
Sbjct: 49 --------------------GYHQFWNYALKKGYSGTAVFTKQ--KPISVRYGVGELESE 86
Query: 158 D-GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
D GR+I EF++FYL+N Y N K + + R +W+ ++E++L KP+++CGD
Sbjct: 87 DEGRIITLEFDSFYLVNVYTINA--KRDLSRLPERLEWEDALKEYLLDLDRHKPVVYCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H E+D+ + + + G GFT+ ER + +L+ G ID++R+
Sbjct: 145 LNVAHAEVDLKNA---------------RSNHGNSGFTLEERGKMTTLLESG-FIDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E+ D WS + R RIDYFIVS +LK++I + + GSD
Sbjct: 189 LYPER-TDAFTWWSYMRDVRARNIGWRIDYFIVSTQLKEKINEASIYAEVL------GSD 241
Query: 336 HCPVSLEL 343
HCP+ LEL
Sbjct: 242 HCPIGLEL 249
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LKF++WN N L F++ + D LQE +M QE + D
Sbjct: 2 LKFISWNVNGLRACYDKG---FADAFNRLEADFFCLQETKM------------QEGQLDV 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ F+ YQ +W+ A+ K Y+GTA+ K +P V++ L
Sbjct: 47 Q-----------------FEGYQSYWNYAEKKGYSGTAIFSK--VKPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E E++YL+ Y PN+ +EE R KWD + ++ + KP+I CGD
Sbjct: 88 HEGRVITLELESYYLITVYTPNS--QEELRRLDYRMKWDDDFRAYLKKLEEKKPVIVCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L+ G D +R+
Sbjct: 146 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTTLLESG-FTDTFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E++ + WS + + RIDYF+ S+ LKD++ ++ + GSD
Sbjct: 190 FYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLTSDSLKDKLRGAQIHTDIL------GSD 242
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 243 HCPVELTI 250
>gi|351701700|gb|EHB04619.1| DNA-(apurinic or apyrimidinic site) lyase [Heterocephalus glaber]
Length = 318
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 162/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGDGPVLYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL LS +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQELS---------------GLS------HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KV++ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVTYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNAAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 64/338 (18%)
Query: 13 SAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDP 72
+++ PAL D +T+ + K LK +WN + L +K + +++ P
Sbjct: 5 ASEGPALYEDPPDQKTSPSG-----KPATLKIASWNVDGLRAWIKK---KGLDWVKEEAP 56
Query: 73 DVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS 132
D++ LQE + P QEL P ++Q W + +D
Sbjct: 57 DILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSAPSDK 92
Query: 133 K-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENS 187
+ Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 93 EGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVR 148
Query: 188 FQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+ NK++
Sbjct: 149 LEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------GNKKN 196
Query: 247 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 306
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF
Sbjct: 197 ---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYF 252
Query: 307 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
++S L + +++ + GSDHCP++L L+
Sbjct: 253 LLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 284
>gi|375091411|ref|ZP_09737704.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
gi|374563511|gb|EHR34824.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 148/308 (48%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L + F +I DPD+I LQE+++ + D P+ H+
Sbjct: 1 MKLISWNVNGLRAVMNKG---FMEYIEQEDPDIICLQEIKLAKGQLEVDLPQYHE----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD-- 158
F NY Y+GTA+ K+ +E+ D
Sbjct: 53 -------------------FYNYA-----ERRGYSGTAIFTKEEPLSHSYGIGIEEHDKE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GRVI E+E FYL+ Y PN+ K R+ W+ + ++L+ + KP+I CGDLN
Sbjct: 89 GRVITLEYEDFYLVTCYTPNS--KRGLLRLDYRQVWEDDFRNYLLKLNKTKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+++P K + GFT ER++F +L G ID +R+ +
Sbjct: 147 VAHKEIDLANP---------------KSNRRNAGFTDEERQKFTELLDAG-FIDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
D+ +SW + I K R + + RIDYF+VSE+ +DR++ + +E E GSD
Sbjct: 191 --PDIPEMYSW-WSYITKARERNVGWRIDYFVVSEDFEDRLLDASIH---MEQE---GSD 241
Query: 336 HCPVSLEL 343
HCPV L L
Sbjct: 242 HCPVVLYL 249
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L V + F D D LQE +M
Sbjct: 1 MKFVSWNVNGLRACVGKS---FEESFRMLDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L F+ Y+ +W+ A+ K Y+GTA+ + QP+ VS+ +
Sbjct: 39 ---QEGQLNLQ-------FEGYEAYWNYAEKKGYSGTAIYTRH--QPQSVSYGMGVEAHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GR+I E FYL+ Y PN+ ++ R +W++ +++ + K P+I CGD
Sbjct: 87 HEGRIITLEMPGFYLVTVYTPNS--QDGLKRLAYRMQWEEDFLQYIKKLDAKKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER +F +L EG D +R+
Sbjct: 145 MNVAHEEIDIKNP---------------KTNRHNAGFTDEERNKFTTLLSEG-FTDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E+ +S WS + + RIDYF+VS LK +II ++ GS
Sbjct: 189 KYPEQ---VRYSWWSYRFQARAKNAGWRIDYFVVSNRLKPQIIDAKIH------TAILGS 239
Query: 335 DHCPVSLELS 344
DHCPV +EL+
Sbjct: 240 DHCPVEVELN 249
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 141/306 (46%), Gaps = 63/306 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + F ++ D D+ +QE SK P EL+ D
Sbjct: 3 KLISWNVNGLRACINKG---FLDYFKKADADIFCIQE-------SKVQP-GQIELELD-- 49
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVK---KCFQPKKVSFSLEKTD 158
Y +W+ A+ K Y+GTA+ + C Q + +
Sbjct: 50 -------------------GYHQYWNYAERKGYSGTAVFTRIKPLCVQ-NGIGIDEHDRE 89
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLN 217
GRVI EF+ +YL+N Y PN K+E R KW+ + +++ K P+I CGD+N
Sbjct: 90 GRVITLEFDNYYLVNVYTPNA--KKELERLDYRMKWEDDFRNYLVGLKAKKPVIVCGDMN 147
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+ +PE N+ GFT ER +F +L G ID +RF +
Sbjct: 148 VAHKEIDLKNPE------------SNRR---SAGFTDEERAKFTELLNAG-FIDTFRFFY 191
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+K + WS + R RIDYF VSEELKDR+++ + + GSDHC
Sbjct: 192 PDKTGAYTW-WSYMFNARARNAGWRIDYFCVSEELKDRLVSASIH------DDVMGSDHC 244
Query: 338 PVSLEL 343
PV L++
Sbjct: 245 PVELQI 250
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 134/269 (49%), Gaps = 37/269 (13%)
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSK-YAGTAL 139
+ AA K EL D +E KL + L P + +Y W+ A+ K Y+G A+
Sbjct: 14 LRAAAGKTFFDAFHELDADIFCIQESKLQEGQIELDLPGYYDY---WNYAEKKGYSGVAM 70
Query: 140 LVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 195
K+ +P VS+ L +GRVI EF +Y+L Y PN+ + E R +W+
Sbjct: 71 FTKE--KPVNVSYGLGIPEHDKEGRVITLEFPDYYVLTCYTPNS--QNELKRLDYRMEWE 126
Query: 196 KRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 254
++ K PLI+CGDLNV+HEEID+ +P N+ + GFT
Sbjct: 127 DAFFAYIKGLDQKKPLIYCGDLNVAHEEIDLKNP------------STNRRN---AGFTD 171
Query: 255 AERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKD 314
ER++ +L G +D++R+LH E + D WS + R RIDYFIVSE LKD
Sbjct: 172 EEREKMTRVLTNG-FVDSFRYLHPE-EKDAYSWWSYRMKARERNVGWRIDYFIVSERLKD 229
Query: 315 RIIACEMQGHGIELEGFYGSDHCPVSLEL 343
RI QG I E GSDHCPV L++
Sbjct: 230 RI-----QGASIHSE-ILGSDHCPVELKI 252
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F + D D+ LQE + A EL
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFEAQDADIFCLQETKCSAG--------QVEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A K Y+GTA+ KK +P VS+ L
Sbjct: 46 -----------------DLKGYHQYWNYAVKKGYSGTAIFTKK--EPISVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K E R W+ + ++ + + KP++ CGD
Sbjct: 87 QEGRVITLEFEDFYMVTVYTPNS--KNELERLDYRMVWEDEFRSYLAKLNEAKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER +F +LK G D++R+
Sbjct: 145 MNVAHEEIDLKNP---------------KTNRRNAGFTDEERSKFTELLKAG-FTDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ ++ + WS + RIDYF+VS + K++I E+ E E GSD
Sbjct: 189 LYPDR-LHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQE---GSD 241
Query: 336 HCPVSLEL 343
HCPV+L L
Sbjct: 242 HCPVALYL 249
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 134/305 (43%), Gaps = 59/305 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFRELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL--VKKCFQPKKVSFSLEKTDG 159
+E + I L P ++ Y ++S Y+GTA+ VK + S +G
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTRVKPLSVAYGIGISAHDNEG 89
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNV 218
RVI EF+ YL+ Y PN K R W+ + F+L KP++ CGDLNV
Sbjct: 90 RVITMEFDDVYLVTVYTPNA--KRALERLDYRMMWEDAFRAFLLGLRAKKPVVVCGDLNV 147
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H EID+ +P K + GFT ER +F +L+ G ID +R L+
Sbjct: 148 AHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLQAG-FIDTFRALYP 191
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
++ + WS + RIDYF+VS EL+DRI A E+ +GSDHCP
Sbjct: 192 DRTGAYTW-WSYLRHARETNAGWRIDYFLVSAELRDRIAAAEIHAD------IFGSDHCP 244
Query: 339 VSLEL 343
VSL L
Sbjct: 245 VSLTL 249
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 144/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+KFV+WN N L +R K F + FD D LQE+++ +N EL
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKL--------QENQIELH-- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
F Y +W+ A+ K Y+GTA+ K +P V + L
Sbjct: 47 -------------------FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGLGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GR+I E+E +Y+ Y PN + E R+KW+ +E+ + KP+I CG
Sbjct: 86 DMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEDDFREYFKKLDEKKPVIICG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+H+EID+ +P K + PGF+ ER++F L G ID +R
Sbjct: 144 DMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTMFLNSG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +K + + WS + RIDYF VS+ LK+++ + + + GS
Sbjct: 188 YFYPDKTDEYSW-WSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIH------QDVMGS 240
Query: 335 DHCPVSLEL 343
DHCPVS+E+
Sbjct: 241 DHCPVSIEI 249
>gi|340352974|ref|ZP_08675807.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
gi|339611994|gb|EGQ16810.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 146/310 (47%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + E +F+ + D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVTKGFKE--SFVE-LNADFFCLQETKM------------QEGQLDI 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
F Y+ +W+ AD K Y+GTA+ K +P V + L+
Sbjct: 46 -----------------TFDGYESYWNYADKKGYSGTAIFTKH--KPINVHYGLDIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI E ETF+L+ Y PN+ ++ R KW+ Q ++ Q K P++ CGD
Sbjct: 87 HEGRVITLEMETFFLVTCYTPNS--QDGLKRLDYRMKWEDDFQAYIKQLDKKKPVVICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER + L G ID++R
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFTDEERAKMTQFLNNG-FIDSFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++S L++++I ++ YGS
Sbjct: 189 LYPEQ---ITYSWWSYRFKAREKNAGWRIDYFLLSNRLRNQLIDAKIHTE------VYGS 239
Query: 335 DHCPVSLELS 344
DHCPV +EL+
Sbjct: 240 DHCPVEVELN 249
>gi|355668893|gb|AER94340.1| APEX nuclease 1 [Mustela putorius furo]
Length = 317
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 151/315 (47%), Gaps = 59/315 (18%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
N K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 55 NGKSATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSENKLPVELQ 108
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
EL P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 109 EL---------------------PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGI 145
Query: 155 ----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKP 209
+GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KP
Sbjct: 146 GEEEHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKP 203
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
L+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L
Sbjct: 204 LVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPL 248
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
D++R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 249 ADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL--- 304
Query: 330 GFYGSDHCPVSLELS 344
GSDHCP++L L+
Sbjct: 305 ---GSDHCPITLYLA 316
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 146/307 (47%), Gaps = 65/307 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN N L + F +F D D+ +QE ++ + EL+
Sbjct: 3 KLVSWNVNGLRACIGKG---FWDFFKEVDADIFCVQETKLQ--------EGQIELE---- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--G 159
+ Y+ +W+ A K Y+GTA+ K +E+ D G
Sbjct: 48 -----------------LEGYEHYWNYAVKKGYSGTAIFTKIKPVSSSCGIGIEEHDNEG 90
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 218
RVI EFE ++L+N Y PN+ K E + R KW+ + ++ Q KP+I CGD+NV
Sbjct: 91 RVITLEFEEYFLVNVYTPNS--KRELERLEYRMKWEDDFRVYLKQLEQTKPVIICGDMNV 148
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+ +P NK GFT+ ER++F +L++G +D +R L+
Sbjct: 149 AHQEIDIKNPR------------SNKR---SAGFTMEEREKFSELLEQG-FVDTFRTLYP 192
Query: 279 EKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+K ++W + + K R K + RIDYF +SE LKDRI A E+ GSDH
Sbjct: 193 DKTG--AYTW-WSYMFKAREKNVGWRIDYFCISEALKDRIEAAEIYCD------IMGSDH 243
Query: 337 CPVSLEL 343
CPV L +
Sbjct: 244 CPVGLTI 250
>gi|363893404|ref|ZP_09320502.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
gi|361963708|gb|EHL16774.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
Length = 251
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 145/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+KFV+WN N L +R K F + FD D LQE+++ +N EL
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKL--------QENQIELH-- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
F Y +W+ A+ K Y+GTA+ K +P V + L
Sbjct: 47 -------------------FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGLGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GR+I E+E +Y+ Y PN + E R+KW+ +E+ + KP+I CG
Sbjct: 86 DMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEDDFREYFKKLDEKKPVIICG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+H+EID+ +P K + PGF+ ER++F L G ID +R
Sbjct: 144 DMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTIFLNAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+++ +K + + WS + RIDYF VS+ LK+++ + + + GS
Sbjct: 188 YIYPDKTDEYSW-WSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIH------QDVMGS 240
Query: 335 DHCPVSLEL 343
DHCPVS+E+
Sbjct: 241 DHCPVSIEI 249
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 143/314 (45%), Gaps = 75/314 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L + F +F D D+ LQE +M ++
Sbjct: 1 MKFVSWNVNGLRACLNKG---FLDFFREADADIFCLQETKMQEGQAE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ KK +P V + + D
Sbjct: 45 -------------LDLPGYLQY---WNSAEKKGYSGTAVFTKK--EPLSVCYDIRHPDHT 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GR I EFE+FYL+N Y PN+ + E R +W+ +E+V Q KP+I CGD
Sbjct: 87 GEGRAITLEFESFYLVNVYTPNS--QRELVRLPYRMEWENAFREYVTQLDEKKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ + K + G GF+ ER + +L G +D++R
Sbjct: 145 LNVAHQEIDLKNA---------------KSNIGNAGFSYEERGKLTELLASG-FLDSFRE 188
Query: 276 LHKEKDMDCGFSWSGNPI-GKYRGKRMRIDYFIVSEELK----DRIIACEMQGHGIELEG 330
L+ D+ ++W + RIDYF++SE L+ D +I E+Q
Sbjct: 189 LY--PDLTGAYTWWSYMFKARQNNAGWRIDYFLISERLREKLSDSLIYSEVQ-------- 238
Query: 331 FYGSDHCPVSLELS 344
GSDHCPV L L+
Sbjct: 239 --GSDHCPVGLILT 250
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 145/311 (46%), Gaps = 70/311 (22%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K ++WN N L L K N F++++ + D+ LQE+++ K P+
Sbjct: 1 MKLMSWNVNGLRALLTKMN---FNSYLEEENVDIFCLQEIKLQDGQIKLEPEG------- 50
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
Y ++W+ A+ K Y+GTA+ KK +P V++ L
Sbjct: 51 ----------------------YHVYWNYAEKKGYSGTAIFTKK--EPLAVTYGLGIKEH 86
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GR+I EFE Y++ Y PN K R W+ ++ KP++ CG
Sbjct: 87 DQEGRLITLEFENMYVITVYTPNA--KRGLERIDYRMDWEDAFLSYIKALDVKKPVVLCG 144
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ +P K + GF+ ER+RF +L+EG ID +R
Sbjct: 145 DLNVAHQEIDLKNP---------------KANRKNAGFSDQERERFSQMLEEG-FIDTFR 188
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+LH D + +SW + R K + R+DYFIVSE LK +I ++ +
Sbjct: 189 YLH--PDQEGAYSWWSYRMNA-RAKNVGWRLDYFIVSERLKKQIRGAKICNEVM------ 239
Query: 333 GSDHCPVSLEL 343
GSDHCPV L +
Sbjct: 240 GSDHCPVELTI 250
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 148/308 (48%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L +K F F D DV ALQE +M A
Sbjct: 1 MKFVSWNVNGLRAVMKKG---FKEFFERVDADVFALQETKMQAD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---KT 157
+ S F+ Y + + A+ K Y+GT + K+ +P V + +E
Sbjct: 42 -----------QITSEMEFEGYYRYMNSAERKGYSGTMVYCKE--EPISVQYDIEGDTSM 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GRVI E+ +Y + Y PN+ KE R +W+ R+++ + + KP+I+ GDL
Sbjct: 89 EGRVITLEYPNYYFVTAYVPNS--KEGLARLGFRMEWEDRLRDHLNRLKEVKPVIYTGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ +P+ + PGF+ ER++ +L +G ID++R+L
Sbjct: 147 NVAHEEIDLKNPQ---------------SNHKNPGFSDEERQKMTELLADG-YIDSFRYL 190
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ + + +S WS + R RIDYFIVSE LK+++ + + + GSD
Sbjct: 191 YPK---EVKYSWWSYRAAARERNVGWRIDYFIVSENLKEKV------KNALIDDEVKGSD 241
Query: 336 HCPVSLEL 343
HCP+ LE+
Sbjct: 242 HCPIELEM 249
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + ++ LS P +Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPAELQELSGLP---HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LKF++WN N L F + + D LQE +M QE + D
Sbjct: 2 LKFISWNVNGLRACYDKG---FVDVFHRLEADFFCLQETKM------------QEGQLDA 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K F+ Y +W+ A+ K Y+GTA+ K +P V++ L
Sbjct: 47 K-----------------FEGYHSYWNYAEKKGYSGTAIFSK--VKPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E E+FYL+ Y PN+ +EE R KW+ + ++ + KP+I CGD
Sbjct: 88 HEGRVITLELESFYLITVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKKPVIVCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L+ G D +R+
Sbjct: 146 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERTKFTTLLESG-FTDTFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E++ + WS + + RIDYF+ S+ LKDR ++G I + F GSD
Sbjct: 190 FYPEQEGIYSW-WSYRFKAREKNSGWRIDYFLTSDSLKDR-----LKGAHIYTDIF-GSD 242
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 243 HCPVELTI 250
>gi|359406465|ref|ZP_09199155.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
gi|357555725|gb|EHJ37349.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
Length = 249
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 138/309 (44%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V+ +F T D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVQK---DFEESFRTLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F+ Y +W+ A+ K Y+GTA+ + P V++ +
Sbjct: 47 ------------------FEGYTSYWNYAEKKGYSGTAIYTRH--TPLSVTYGIGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI E E FYL+ Y PN+ ++ R KW+ +++ K P+I CGD
Sbjct: 87 HEGRVITLEMEDFYLVTCYTPNS--QDGLRRLDYRMKWEDDFLQYIKGLDAKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT E + A L EG ID +R
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFTDEECAKMTAFLGEG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
LH + D +S WS + + RIDYFI SE L++RI + + +GS
Sbjct: 189 LHPD---DPTYSWWSYRFKAREKNAGWRIDYFITSERLRERITSAAIHNE------VFGS 239
Query: 335 DHCPVSLEL 343
DHCPV L L
Sbjct: 240 DHCPVELIL 248
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 71/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK+++WN N L +K F + + D LQE ++ HQ
Sbjct: 4 LKYISWNVNGLRACIKKG---FLDSFKNLNADCFCLQETKLQP---------HQ------ 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
L+ P + YQ W S Y+GTAL K +P VS+ +
Sbjct: 46 -----------IELNIPGY--YQYWNSAIKKGYSGTALFTK--IKPISVSYGMNIEEHDQ 90
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GR+I AEFE +L+ Y PN+ + + + R KW+ + ++L+ + KP+I CGDL
Sbjct: 91 EGRLITAEFENHFLVVCYTPNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVILCGDL 148
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+++P + GFT ERK+F +L+ G D +R+L
Sbjct: 149 NVAHKEIDLANPS---------------SNHKNAGFTDDERKKFSTLLENG-FTDTFRYL 192
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELEGFY 332
+ +K D WS + R RIDYF+VS++LK++I I E+Q
Sbjct: 193 YPDKK-DAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPEIQ---------- 241
Query: 333 GSDHCPVSL 341
GSDHCPV L
Sbjct: 242 GSDHCPVEL 250
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F + D D+ LQE + A EL
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFEAQDADIFCLQETKCSAG--------QVEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A K Y+GTA+ KK +P VS+ L
Sbjct: 46 -----------------DLKGYHQYWNYAVKKGYSGTAIFTKK--EPISVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K E R W+ + ++ + + KP++ CGD
Sbjct: 87 QEGRVITLEFEDFYMVTVYTPNS--KNELERLDYRMIWEDEFRSYLAKLNEAKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER +F +LK G D++R+
Sbjct: 145 MNVAHEEIDLKNP---------------KTNRRNAGFTDEERTKFTELLKAG-FTDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ ++ + WS + RIDYF+VS + K++I E+ E E GSD
Sbjct: 189 LYPDR-LHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQE---GSD 241
Query: 336 HCPVSLEL 343
HCPV+L L
Sbjct: 242 HCPVALYL 249
>gi|429738347|ref|ZP_19272158.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
gi|429160421|gb|EKY02885.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
Length = 249
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 139/309 (44%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F T + D LQE +M A
Sbjct: 1 MKFISWNVNGLRACVGK---DFEAQFKTLNADFFCLQETKMQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+L L F YQ +W+ AD + Y+GTA+ + P V++ +
Sbjct: 42 ------QLYLQ-------FDGYQSYWNYADKRGYSGTAIYTRHT--PLSVTYGIGVDAHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E FYL+ Y PN+ ++E R W+ + F+L KP+I CGD
Sbjct: 87 HEGRVITLEMNDFYLVTVYTPNS--QDELKRLDYRMTWEDDFKTFLLALDARKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G D +RF
Sbjct: 145 MNVAHQEIDIKNP---------------KTNRRNAGFTDEEREKMTVLLDSG-FTDTFRF 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
++ E + +S WS + R RIDYF+VS+ LK +I ++ GS
Sbjct: 189 MYPE---EVTYSWWSYRFKARERNTGWRIDYFLVSDRLKPQIADAKIH------TDILGS 239
Query: 335 DHCPVSLEL 343
DHCPV L+L
Sbjct: 240 DHCPVELDL 248
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LKF++WN N L F + + D LQE +M QE + D
Sbjct: 2 LKFISWNVNGLRACYDKG---FVDVFHRLEADFFCLQETKM------------QEGQLDA 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K F+ Y +W+ A+ K Y+GTA+ K +P V++ L
Sbjct: 47 K-----------------FEGYHSYWNYAEKKGYSGTAIFSK--VKPLSVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E E+FYL+ Y PN+ +EE R KW+ + ++ + KP+I CGD
Sbjct: 88 HEGRVITLELESFYLITVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKKPVIVCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L+ G D +R+
Sbjct: 146 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTTLLESG-FTDTFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E++ + WS + + RIDYF+ S+ LKDR ++G I + F GSD
Sbjct: 190 FYPEQEGIYSW-WSYRFKAREKNSGWRIDYFLTSDSLKDR-----LKGAHIYTDIF-GSD 242
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 243 HCPVELTI 250
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 144/307 (46%), Gaps = 65/307 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V+ F + D D+ +QE ++
Sbjct: 4 KMISWNVNGLRACVQKG---FLEYFKEADADIFCIQESKL-------------------- 40
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
+E ++ L P + Y +W+ A K Y+GTA+ K+ +P VS+ +
Sbjct: 41 --QEGQIEL-------PLEGYHQYWNYAKKKGYSGTAVFSKE--EPLSVSYGIGIEEHDQ 89
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI EF+T+YL+ Y PN+ + E R W++ ++ KP+I+CGDL
Sbjct: 90 EGRVITLEFDTYYLVTVYTPNS--QNELARLPYRMTWEEAFLAYLKGLEKNKPVIFCGDL 147
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER++F IL+ G ID YR+
Sbjct: 148 NVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFSQILENG-FIDTYRYF 191
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ E++ + WS + + RIDYF VSE LKDR++ + GSDH
Sbjct: 192 YPEQEGVYSW-WSYRFRAREKNAGWRIDYFCVSECLKDRLVDARIHTE------ITGSDH 244
Query: 337 CPVSLEL 343
CPV L++
Sbjct: 245 CPVELQI 251
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 65/314 (20%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQ 95
S++ L+ V+WN N L +K + P F D DV A+QE ++ D P HQ
Sbjct: 4 SEERELRLVSWNVNGLRAVMKKD-PSFPQIFEAADADVFAIQETKLQEGQLDLDLPGYHQ 62
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQP----KKV 150
W+ A+ K Y+GTA+ ++ +P +++
Sbjct: 63 T------------------------------WNYAERKGYSGTAVFSRE--EPLRVIRQI 90
Query: 151 SFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 209
+GRV EFE ++ ++ Y PN+ K R WD+ +EF+ + KP
Sbjct: 91 GCEFADDEGRVCALEFERYWFVDVYTPNS--KNGLLRLDERMVWDRSYREFLSGLAKEKP 148
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
++ CGD NV+HEEID+ +P+ +N GF+ ER+ FG +L+ G
Sbjct: 149 VVTCGDFNVAHEEIDLKNPD---TNHMNA------------GFSDEEREGFGKLLEAG-F 192
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
+D++R L+ +++ D WS + R RIDYF+VSE+ D I+ + L+
Sbjct: 193 VDSFRRLYPDRE-DAYSWWSYRMRARERNVGWRIDYFLVSEDAADGIVEASI------LD 245
Query: 330 GFYGSDHCPVSLEL 343
YGSDHCPV L L
Sbjct: 246 DVYGSDHCPVQLTL 259
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K+++WN N L +K F ++ P++I LQE++M + G D
Sbjct: 3 KYISWNVNGLRACIKKG---FLDYFNEQKPNIIGLQEIKM-SEGQLDLE----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
+ Y +++ A+ K Y+GTA+ +P VS+ +
Sbjct: 48 -----------------LEGYYTYYNYAEKKGYSGTAIFTD--VEPISVSYGIGIEEHDK 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AEFE +Y + Y PN+ K E R W+ + ++ + KP+I CGDL
Sbjct: 89 EGRVITAEFEDYYFVTVYTPNS--KNELERLDYRMIWEDEFRSYLKKLEEKKPVIVCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFTI ER +F +++ G ID +R+
Sbjct: 147 NVAHKEIDLKNP---------------KSNTRSAGFTIEERNKFTELIENG-FIDTFRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K + WS + RIDYF VS LKDR++ E+ + GSDH
Sbjct: 191 YPDKIHAYSW-WSYRGNARKNNTGWRIDYFCVSSSLKDRLVDAEIH------DKVEGSDH 243
Query: 337 CPVSLELS 344
CPV L ++
Sbjct: 244 CPVVLYIN 251
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKFISWNVNGIRACVQKG---FLDFFKEADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P V++ +
Sbjct: 39 ---QEGQLKL-------ELEGYHQFWNYAERKGYSGTAIFTKQ--EPLSVAYGIGMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE FY + Y PN+ + E R +W+ +++ + K P+I+CGD
Sbjct: 87 KEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHREIDLKNP---------------KTNQKNAGFTDEERGKFTELLSAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E++ + WS + + RIDYF VSE LKDR+ ++ L GSD
Sbjct: 189 FYPEQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKI------LTDVMGSD 241
Query: 336 HCPVSLEL 343
HCPV L+
Sbjct: 242 HCPVELDF 249
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 64/334 (19%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
PAL D +T+ + K LK +WN + L +K + +++ PD++
Sbjct: 3 PALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILC 54
Query: 77 LQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YA 135
LQE + P QEL P ++Q W + +D + Y+
Sbjct: 55 LQETK---CSENKLPAELQEL---------------------PGLSHQYWSAPSDKEGYS 90
Query: 136 GTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 191
G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G + R
Sbjct: 91 GVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYR 146
Query: 192 RKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 250
++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+ NK++
Sbjct: 147 QRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------GNKKN---A 191
Query: 251 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 310
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++S
Sbjct: 192 GFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSH 250
Query: 311 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
L + +++ + GSDHCP++L L+
Sbjct: 251 SLLPALCDSKIRSKAL------GSDHCPITLYLA 278
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + V F ++ D DV +QE ++ K+H +
Sbjct: 1 MKLVSWNVNGIRACVGKG---FLDYFYQIDADVFCIQETKLQEGQISLELKDHSQ----- 52
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+W+ A K Y+GTA+ KK +P V + + T+
Sbjct: 53 ------------------------YWNYAVKKGYSGTAIFSKK--KPLSVQYGIGTTEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
GR I EFE FYL+N Y PN+ + + R W+ ++EF+ + + KP+I CGD
Sbjct: 87 SEGRAITLEFEEFYLVNIYTPNS--QRDLARLNYRVAWEDYLREFLQELDTKKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H EID+ +P K + GFT ER + +L G +D +R
Sbjct: 145 MNVAHHEIDLKNP---------------KSNMKNSGFTPEERGKMTELLNNG-FVDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ EK+ + WS + R RIDYF+VSE L++ II ++ GSD
Sbjct: 189 LNPEKE-NVYTWWSYMNKVRERNIGWRIDYFLVSERLRESIIDTQVHS------DIMGSD 241
Query: 336 HCPVSLEL 343
HCPV LE+
Sbjct: 242 HCPVLLEI 249
>gi|384108936|ref|ZP_10009823.1| exodeoxyribonuclease III [Treponema sp. JC4]
gi|383869507|gb|EID85119.1| exodeoxyribonuclease III [Treponema sp. JC4]
Length = 276
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 148/318 (46%), Gaps = 63/318 (19%)
Query: 43 KFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
KF++WN +SL + + + I +D D+IA+QE ++PA G H E
Sbjct: 3 KFISWNIDSLNAALTSTSARAVMSQDVLRKIAAYDADIIAIQETKLPAEGPS---ATHVE 59
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK 156
L + + S PP A YAGT +L K+ + +K+ L
Sbjct: 60 LLKSYFTGYHFEWVS----SVPP----------AKKGYAGTMILYKEGLKAEKIVPKLGA 105
Query: 157 TD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 210
D GR+I EF+ FY +N Y PN+G + + R+ WD +++ K +
Sbjct: 106 PDTMDDEGRLIALEFDNFYFVNVYTPNSG--DGLKRLKERQLWDSLYADYLSSLDQKKAV 163
Query: 211 IWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
I CGD NV+H+EID+++P F+A GFT ER+ F +L +G
Sbjct: 164 IACGDFNVAHKEIDLANPASNHFSA-----------------GFTDEEREGFTNLLAKG- 205
Query: 269 LIDAYRFLHKE-KDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
D++RF+H + KD+ +SW G I K RIDYFIVS+ +KD+I EM G
Sbjct: 206 FTDSFRFIHGDVKDI---YSWWGQRIKTSKINNSGWRIDYFIVSDRIKDKIQKSEMIDSG 262
Query: 326 IELEGFYGSDHCPVSLEL 343
DH P+ LE+
Sbjct: 263 PR------QDHTPILLEI 274
>gi|171915906|ref|ZP_02931376.1| exodeoxyribonuclease III [Verrucomicrobium spinosum DSM 4136]
Length = 250
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 141/307 (45%), Gaps = 61/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + E+ +T D DVI LQEV+
Sbjct: 1 MKLVSWNVNGIRACMDKGLREY---LTACDADVICLQEVK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+ EE+ L FK+YQ+ W+ A K Y+GTA+L ++ + + +++ D
Sbjct: 38 --AMEEQAGL------EWFKDYQVVWNAAQKKGYSGTAILTRQPIKSHAIGMGIDEHDKE 89
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLN 217
GRVI EF +Y++N Y PN + E R WD + ++ KP++ CGDLN
Sbjct: 90 GRVITVEFPDYYVVNVYTPNA--QAELARLPYRLLWDDAFRLYLKNLEQTKPVLACGDLN 147
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H EID++ P KE+ PGF+ ER FG +L+ G +D +R
Sbjct: 148 VAHNEIDIARP---------------KENRFSPGFSDQERASFGKLLESG-FVDTFRHFD 191
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+S+ N G G RIDY++ S+ LKD + + I +GSDHC
Sbjct: 192 SRPHQYSWWSYRANARGNNVG--WRIDYWLASQGLKDGLKS------SIIRPDIHGSDHC 243
Query: 338 PVSLELS 344
PV L +
Sbjct: 244 PVELVMG 250
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V+ F ++ + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRAAVQKG---FLDYFKNENADIFCIQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E ++ L + Y +W+ A+ K Y+GTA+ KK +P +VS+ L
Sbjct: 39 ---QEGQIEL-------DLEGYHQYWNYAEKKGYSGTAIFTKK--KPIEVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E+E FY++ Y PN+ +EE R W+ + +V++ KP+I CGD
Sbjct: 87 KEGRVITLEYEDFYMITVYTPNS--QEELARLDYRMSWEDEFRNYVMKLDKLKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER +F +L+ G ID++R
Sbjct: 145 LNVAHKEIDLKNP---------------KSNRKNAGFSDEERAKFTELLENG-FIDSFRH 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E + +S WS + RIDYF+VSE LKD + E+ + GS
Sbjct: 189 FYPE--VTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNEIL------GS 240
Query: 335 DHCPVSLEL 343
DHCPV L+L
Sbjct: 241 DHCPVVLKL 249
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 158/319 (49%), Gaps = 62/319 (19%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ N KK LK +WN + + VK E+ ++ +PD++ LQE
Sbjct: 50 TSSNGKKYTLKVTSWNVDGIRAWVKKKGVEW---VSEENPDILCLQE------------- 93
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P +V
Sbjct: 94 --------TKCAEKQLPADIRDLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEV 139
Query: 151 SFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
+ + +GRVI AEF +++L+ +Y PN G + R+ WD + ++ +
Sbjct: 140 KYGIGEEEHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKGLA 197
Query: 207 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KPLI CGDLNV+HEEID+ +P+ NK++ GFT ER F +L+
Sbjct: 198 ARKPLILCGDLNVAHEEIDLKNPK------------GNKKN---AGFTPEERAGFTKLLE 242
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
EG +D +R L+ + F W+ + + R+DYF+VS++L++ I +++
Sbjct: 243 EG-FVDTFRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTA 300
Query: 326 IELEGFYGSDHCPVSLELS 344
+ GSDHCP++L ++
Sbjct: 301 L------GSDHCPITLYIA 313
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 143/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V EF D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGK---EFEQQFKDLDADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
LS P +++Y W+ AD K Y+GTA+ K +P V++ +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKH--KPLNVTYGIGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E + FYL+ Y PN+ ++ R KW+ Q ++ + KP++ CGD
Sbjct: 87 HEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHQEIDLKNP---------------KTNRKNAGFTDEEREKMTQLLGNG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + R RIDYF++SE L+DR+ ++ GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------IMGS 239
Query: 335 DHCPVSLEL 343
DHCPV ++L
Sbjct: 240 DHCPVEVDL 248
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 68/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEKSNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V++ L
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGLGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+CGD
Sbjct: 88 QEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+E+D+ +P K + PGF+ ER++F +L+ G ID YR+
Sbjct: 146 LNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D + +SW + R K + R+DYF++SE LK +I ++ + G
Sbjct: 190 LY--PDQEGAYSWWSYRMDA-RAKNIGWRLDYFVISERLKHKITDAKINSEVM------G 240
Query: 334 SDHCPVSLELS 344
SDHCPV L ++
Sbjct: 241 SDHCPVELHIN 251
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 158/319 (49%), Gaps = 62/319 (19%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ N KK LK +WN + + VK E+ ++ +PD++ LQE
Sbjct: 42 TSSNGKKYTLKVTSWNVDGIRAWVKKKGVEW---VSEENPDILCLQE------------- 85
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P +V
Sbjct: 86 --------TKCAEKQLPADIRDLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEV 131
Query: 151 SFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
+ + +GRVI AEF +++L+ +Y PN G + R+ WD + ++ +
Sbjct: 132 KYGIGEEEHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKGLA 189
Query: 207 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KPLI CGDLNV+HEEID+ +P+ NK++ GFT ER F +L+
Sbjct: 190 ARKPLILCGDLNVAHEEIDLKNPK------------GNKKN---AGFTPEERAGFTKLLE 234
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
EG +D +R L+ + F W+ + + R+DYF+VS++L++ I +++
Sbjct: 235 EG-FVDTFRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTA 292
Query: 326 IELEGFYGSDHCPVSLELS 344
+ GSDHCP++L ++
Sbjct: 293 L------GSDHCPITLYIA 305
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 136/307 (44%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + DV LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADVFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ +
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVSYGIGIEEHDN 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI E YL+ Y PN K R W+ + F+L KP++ CGDL
Sbjct: 88 EGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAWEDSFRAFLLDLRAKKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GFT ER +FG +L G +D +R L
Sbjct: 146 NVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVDTFRAL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ + WS + RIDYF+VS EL+DRI A E+ +GSDH
Sbjct: 190 YPDRTGAYTW-WSYLRHARETNAGWRIDYFLVSAELRDRIAAAEIHSD------IFGSDH 242
Query: 337 CPVSLEL 343
CPVSL L
Sbjct: 243 CPVSLTL 249
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 142/308 (46%), Gaps = 61/308 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N +K F + + + D+ LQE++M D
Sbjct: 1 MKLISWNVNGYRAVMKKG---FMDAFNSLNADIFCLQEIKMKENQMTDE----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
++ + Y +S + Y+GT + K +P VSF + T
Sbjct: 47 -------------MNIEGYHRYS--YSANKAGYSGTLVYTK--VEPIGVSFGIGIDEHDT 89
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDL 216
+GRVI E+E F+L+N Y PN+ K E + R W+ ++ + KP+I CGDL
Sbjct: 90 EGRVITCEYEDFFLVNVYTPNSKQKLERLDY--RMVWEDEFHNYLNILRDRKPVIVCGDL 147
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P+ N+ GFT ER + +L +G ID +R+
Sbjct: 148 NVAHNEIDLKNPQ------------SNRR---SAGFTDEERNKMSLLLNDG-YIDTFRYF 191
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K + + WS + R RIDYFIVS++LKD ++ ++ + GSDH
Sbjct: 192 YPDKTDEYSY-WSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIH------QSIMGSDH 244
Query: 337 CPVSLELS 344
CPV LE++
Sbjct: 245 CPVELEIN 252
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 148/310 (47%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVNKG---FLDYFKASDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+E I + L P Y+ +W+ A+ K Y+GTA+ + +P+ V + +E+
Sbjct: 39 ----QEGQIGIE-LGEP----YRKYWNYAEKKGYSGTAIFTR--IEPQSVRYGMEEDAEP 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GR+I EFE+FYL+ Y PN K + + + R +W++R + ++ + KP+I CGDL
Sbjct: 88 EGRIITLEFESFYLVTVYTPNA--KRDLSRLEYRLEWEERFRRYLQELDAHKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ + K + G GFT ER + +L+ G ID +R
Sbjct: 146 NVAHQEIDLKNA---------------KSNQGNSGFTPEERDKMTRLLEAG-FIDTFR-- 187
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H+ D ++ WS P + R RIDYF+VS L D I ++ GSD
Sbjct: 188 HRYPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLNDFIKDAKIDA------AITGSD 241
Query: 336 HCPVSLELSE 345
HCPV LE+ +
Sbjct: 242 HCPVILEMED 251
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKFISWNVNGIRACVQKG---FLDFFKEADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P V++ +
Sbjct: 39 ---QEGQLKL-------ELEGYHQFWNYAERKGYSGTAIFTKQ--EPLSVAYGIGMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE FY + Y PN+ + E R +W+ +++ + K P+I+CGD
Sbjct: 87 KEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHREIDLKNP---------------KTNRKNAGFTDEERGKFTELLSAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E++ + WS + + RIDYF VSE LKDR+ ++ L GSD
Sbjct: 189 FYPEQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKI------LTDVMGSD 241
Query: 336 HCPVSLEL 343
HCPV L+
Sbjct: 242 HCPVELDF 249
>gi|398309083|ref|ZP_10512557.1| exodeoxyribonuclease III [Bacillus mojavensis RO-H-1]
Length = 252
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 66/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D++ LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKDEDADIVCLQETKIQDGQVDLEPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A+ K Y+GTA+ K+ +P V + +
Sbjct: 51 ---------------------YHVYWNYAEKKGYSGTAVFSKQ--KPLNVMYGIGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE Y++ Y PN K R +W++ + F+L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENMYVMTVYTPNA--KRGLERIDYRLQWEEALLAFILELDKKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER F L+ G ID++R+
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FIDSFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ D++ +SW G + R R+DYF+VSE LK +I ++ + GS
Sbjct: 190 LY--PDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLKGQIEDAKISAQVL------GS 241
Query: 335 DHCPVSLELS 344
DHCPV L ++
Sbjct: 242 DHCPVELTIN 251
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 145/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V+ F ++ D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVQKG---FLDYFHEMGADIFCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+NY +W+ A K Y+GTA+ K +P VS+ L E
Sbjct: 46 N-----------------LENYNQYWNYAAKKGYSGTAVFTK--IKPISVSYGLGEHMED 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GR I EF +FYL+N Y PN+ + + R +W+ I+ ++L+ KP+I CGD
Sbjct: 87 HEGRAITLEFPSFYLVNVYTPNS--QRDLARLSYRLEWEDNIRNYLLELDKVKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ + K + G GFT ER++ +L G +D++R+
Sbjct: 145 LNVAHQEIDLKNY---------------KTNRGNSGFTDEEREKMTRLLDSG-FVDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ +K D WS + R RIDYFI+S+ L II ++ GSD
Sbjct: 189 LYPDKG-DVYSWWSYMNKVRERNIGWRIDYFILSKGLSSSIIDSQIHTE------IMGSD 241
Query: 336 HCPVSLELS 344
HCPV LEL+
Sbjct: 242 HCPVCLELN 250
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 144/310 (46%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + E I D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVTKGFKESFEAI---DADFFCLQETKMQA-GQLDIA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y+ +W+ A+ K Y+GTA+ K QP V++ L
Sbjct: 47 ------------------FDGYESYWNYAEKKGYSGTAIFTKH--QPLNVTYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E E FYL+ Y PN+ ++ + R +W+ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEMENFYLVTCYTPNS--QDGLKRLEYRMRWEDDFQTYIKRLDEKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER + L +G ID++R
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTQFLGKG-FIDSFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++S+ L+ +++ ++ YGS
Sbjct: 189 LYPEQ---VTYSWWSYRFKAREKNAGWRIDYFLLSDRLRAQLVDAKIHTE------VYGS 239
Query: 335 DHCPVSLELS 344
DHCPV +EL+
Sbjct: 240 DHCPVEVELN 249
>gi|387015594|gb|AFJ49916.1| DNA-(apurinic or apyrimidinic site) lyase-like [Crotalus
adamanteus]
Length = 316
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 157/319 (49%), Gaps = 62/319 (19%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ + KK LK +WN + + VK E+ N DPDV+ LQE
Sbjct: 52 TSSSGKKYTLKVTSWNVDGIRAWVKKKGLEWVN---KEDPDVLCLQE------------- 95
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P V
Sbjct: 96 --------TKCAEKQLPADIRDLAEYPHK----FWACSNDKEGYSGVALLSKN--KPLDV 141
Query: 151 SFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++ + +GRVI AEF +++L+ TY PN G + R++WD+ + ++ +
Sbjct: 142 TYGIGEEEHDKEGRVITAEFSSYFLVTTYVPNAG--RGLVRLEYRQRWDEAFRSYLKGLA 199
Query: 207 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KPLI CGDLNV+H+EID+ +P+ NK++ GFT ER F +L+
Sbjct: 200 ARKPLILCGDLNVAHQEIDLKNPK------------GNKKN---AGFTPEERAGFTQLLE 244
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
G +D +R L+ F W+ + + R+DYF+VS+EL++ + +++
Sbjct: 245 AG-FVDTFRHLYPNTPYAYTF-WTYMMNARAKNVGWRLDYFVVSKELQEGLCDSKIRSTA 302
Query: 326 IELEGFYGSDHCPVSLELS 344
+ GSDHCP++L ++
Sbjct: 303 L------GSDHCPITLYVA 315
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 145/312 (46%), Gaps = 73/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F F D D+ +QE +M A G D
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFQEADADIFCIQESKMQA-GQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 47 ------------------LEGYHQYWNYAEKKGYSGTAVFTKK--EPLSVQYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPLIW 212
+GRVI EFE FY + Y PN+ + E R +W+ +F+ G KP+I+
Sbjct: 87 KEGRVITLEFEEFYFVTVYTPNS--QSELARLSYRIQWET---DFLAYLKGLEQKKPVIF 141
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
GDLNV++ EID+ +P+ N+++ GFT ER +FG +LK G ID
Sbjct: 142 AGDLNVAYAEIDLKNPK------------TNRKN---AGFTDEERAKFGEVLKAG-FIDT 185
Query: 273 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R+ + E M+ +S WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 186 FRYFYPE--MEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLADAKI------LTDV 237
Query: 332 YGSDHCPVSLEL 343
GSDHCP+ L+L
Sbjct: 238 MGSDHCPIELDL 249
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 153/323 (47%), Gaps = 66/323 (20%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
T +S + +K K VTWN N + +KN E+ I D DV LQE
Sbjct: 82 TRIASSDYGRKGSWKIVTWNVNGIRSWLKNGGLEY---IEEEDADVYCLQE--------- 129
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPP----FKNYQIWWSLADSK-YAGTALLVKK 143
TK S EEKL PP +K Y+ ++ D + Y+G ++ +K
Sbjct: 130 ------------TKCS-EEKL--------PPEVTNYKGYKSYFLAGDKEGYSGVGIMSRK 168
Query: 144 CFQPKKVSFSLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 201
+ SLE+ D GRVI EFE F+L+N+Y PN G R WD+ +++
Sbjct: 169 TPLNVEYGLSLEEHDSEGRVITLEFEEFFLVNSYVPNAG--RGLVRLDYRLTWDRDFRKY 226
Query: 202 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 260
++ K +I GDLNV+H EID+ +P+ NK++ GFT ER+
Sbjct: 227 LVGLKKKKSVILTGDLNVAHNEIDLKNPK------------TNKKN---AGFTEEERQGL 271
Query: 261 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 320
+L+EG +D +R L+ E++ F W+ + + R+DYFIVSE+L D +I E
Sbjct: 272 TDLLEEG-FVDTFRKLYPEREGAYTF-WTYMMNARAKNVGWRLDYFIVSEDLIDNVIDNE 329
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
++ GSDHCPV L L
Sbjct: 330 IRST------VMGSDHCPVVLHL 346
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 65/308 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KFV+WN N + +K F +PD+I LQE+++ + G D
Sbjct: 5 KFVSWNVNGIRAALKKG---FMESFEELNPDIIGLQEIKL-SEGQLD------------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
L P Y ++W+ A+ K Y+GTA+ ++ +P VS+ +
Sbjct: 48 ------------LEIP---GYHMYWNYAEKKGYSGTAVFTRE--EPLSVSYGIGIEEHDK 90
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI E+ +Y + Y PN+ + R +W++ E++ + KP++ CGDL
Sbjct: 91 EGRVITLEYPEYYFITCYTPNS--QRGLARLDYRMEWEEAFLEYLNRLDEVKPVVLCGDL 148
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +PE N+++ GF+ ER +F +L+ G D +R+L
Sbjct: 149 NVAHNEIDLKNPE------------SNRKN---AGFSDEERDKFTKLLEAG-YTDTFRYL 192
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K+ + + WS + R RIDYF+VS+ L+D+I+ + + GSDH
Sbjct: 193 YPDKEDEYSW-WSYFRQARDRNIGWRIDYFVVSKVLEDKIVEASIH------QNIMGSDH 245
Query: 337 CPVSLELS 344
CPVS+EL+
Sbjct: 246 CPVSVELN 253
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 150/322 (46%), Gaps = 67/322 (20%)
Query: 31 TSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDA 90
T S + KK LK TWN + + +K + ++ IT D D+IALQE +
Sbjct: 93 TKSNQEGKKHNLKICTWNVSGIRAVIKKHGLDY---ITKEDADIIALQETKC-------- 141
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQP 147
D K E KL P + +Y DSK Y G AL K+ +P
Sbjct: 142 --------DKGKMPDEVKL--------PGYHHY-----FLDSKKPGYCGVALFSKE--KP 178
Query: 148 KKVSFSLEK----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
V + L T+GR+I EF F+++N Y PN G K + +R +W+K ++ +
Sbjct: 179 ISVKYGLNDSTFDTEGRIITVEFPEFFVINVYVPNAGQKLV--TLPKRLEWNKLFKKHIE 236
Query: 204 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ KP+I CGD+NV+H+EID+ +P K + GFT ER
Sbjct: 237 ELDQKKPVIICGDMNVAHQEIDLKNP---------------KTNTKNAGFTKEERNDMTD 281
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
L G ID +R L+ E + F WS + + R+DYF++SE +K+++ C+
Sbjct: 282 FLAAG-FIDTFRSLYPEIEGAYTF-WSYFANARSKNIGWRLDYFLISERIKNKV--CD-- 335
Query: 323 GHGIELEGFYGSDHCPVSLELS 344
I + YGSDHCPV L ++
Sbjct: 336 --NIIRKDVYGSDHCPVILYIN 355
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 145/314 (46%), Gaps = 67/314 (21%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
+ K +KF++WN N L R + F + D D LQE +M A +
Sbjct: 5 TYKKRMKFISWNVNGL--RACDG-KGFRDAFRNLDADFFCLQETKMQAG----------Q 51
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL- 154
L D F+ Y+ +W+ A+ K Y+GTA+ K P V++ L
Sbjct: 52 LDID-------------------FEGYESYWNYAEKKGYSGTAIFTKH--HPLNVTYGLG 90
Query: 155 ---EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PL 210
+GRVI E + F+L+ Y PN+ ++E R W+ +E++L+ + K P+
Sbjct: 91 HEEHDHEGRVITLEMDNFFLITVYTPNS--QDELRRLDYRMTWEDAFREYLLELNKKKPV 148
Query: 211 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 270
I CGDLNV+H+EID+ +P K + GFT ER++ +L G
Sbjct: 149 IVCGDLNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLNAG-FT 192
Query: 271 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
D +RF + D+ +S WS + + RIDYF+VS L D++++ +
Sbjct: 193 DTFRFFN--PDLTGAYSWWSYRFRAREKNAGWRIDYFLVSNCLNDKLVSASIHNE----- 245
Query: 330 GFYGSDHCPVSLEL 343
+GSDHCPV + L
Sbjct: 246 -IFGSDHCPVEIVL 258
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 138/314 (43%), Gaps = 66/314 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+ F+TWN N + +KNN+ EF N + D ++QE R+ P D P ++
Sbjct: 28 MNFITWNVNGIRAILKNNFYEFFN---AANADFFSVQETRVSPGEVKLDLPSDY------ 78
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD-- 158
YQ W YAGTA+ K QP KV L+ D
Sbjct: 79 ----------------------YQYWNDAERPGYAGTAVFTKH--QPLKVMLGLDGNDQD 114
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
GR I E+ FYL+N YAP G EE + +WD+++ FV + + KP+I GD
Sbjct: 115 PEGRAITLEYPNFYLVNVYAPAAG--EELQRLTFKEEWDQKLITFVDKLKATKPVIINGD 172
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LN++HE ID+ PE E GFT AER++ +L G D YR
Sbjct: 173 LNIAHEPIDIYAPE---------------EHRHAAGFTDAERQQMTQLLDSG-FTDIYRA 216
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL-KDRIIACEMQGHGIELEGFYGS 334
H ++ + WS + R+DYFI+S L KD I M + GS
Sbjct: 217 THPDEPNKYTW-WSYRDHARRDNHGWRLDYFIISNNLVKDVKITTIM-------DTVSGS 268
Query: 335 DHCPVSLELSEASS 348
DHCP+ L L+ ++
Sbjct: 269 DHCPLQLILNNLTT 282
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 139/310 (44%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVTKG---FKESFAEIDADFFCLQETKMQA-GQLDIA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y+ +W+ AD K Y+GTA+ K +P VS+ L
Sbjct: 47 ------------------FDGYESYWNYADKKGYSGTAIFTKH--KPLSVSYGLGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E E FYL+ Y PN ++ R +W+ Q +V + KP+I CGD
Sbjct: 87 HEGRVITLEMEKFYLVTCYTPNA--QDGLKRLDYRMQWEDDFQAYVKRLDEKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER + L G ID++R
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTQFLGNG-FIDSFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++S L+++++ ++ YGS
Sbjct: 189 LYPEQ---VTYSWWSYRFKAREKNAGWRIDYFLLSNRLREQLVDAKIHTE------VYGS 239
Query: 335 DHCPVSLELS 344
DHCPV +EL+
Sbjct: 240 DHCPVEVELN 249
>gi|345884610|ref|ZP_08836014.1| exodeoxyribonuclease [Prevotella sp. C561]
gi|345042603|gb|EGW46699.1| exodeoxyribonuclease [Prevotella sp. C561]
Length = 249
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 145/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F + D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KDFEQQFKDLNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
LS P +++Y W+ AD K Y+GTA+ K +P V++ ++
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIYTKH--KPLNVTYGIDIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E + FYL+ Y PN+ ++ R KW++ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEMDDFYLITVYTPNS--QDGLRRLDYRMKWEEDFQAYLHRLDAIKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHQEIDLKNP---------------KTNHKNAGFTDEEREKMTQLLSNG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ EK +S WS + + RIDYF++SE LKDR+ ++ + GS
Sbjct: 189 LYPEK---VTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIM------GS 239
Query: 335 DHCPVSLEL 343
DHCP+ + L
Sbjct: 240 DHCPIEITL 248
>gi|417838439|ref|ZP_12484677.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761982|gb|EGP13251.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 275
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 143/321 (44%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F NY W A YAGT L K P+
Sbjct: 58 EVLAEM------------------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++ D GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PAIGAPDTMDYEGRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
GKP+I GD NV+H ID+ HPE + GFT ER+ F +LK
Sbjct: 158 KGKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLLK 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H +++ +SW + K RIDY+IVS+ + D++ EM
Sbjct: 203 LG-FTDTFRKVH--GNIEGVYSWWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEMID 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DHCP+ LE++
Sbjct: 260 TGER------KDHCPIMLEIN 274
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|336422208|ref|ZP_08602360.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663176|gb|EDS07306.1| exodeoxyribonuclease III [Clostridium scindens ATCC 35704]
gi|336009118|gb|EGN39116.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
Length = 250
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 145/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N + V+ F F D D+ +QE +M
Sbjct: 1 MKFVSWNVNGIRACVQKG---FMEFFQEADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L +P + Y W+ A K Y+GTA+ K+ +P VS+ +
Sbjct: 39 ---QEGQL----ELETPGYHQY---WNYAKKKGYSGTAIFTKQ--EPISVSYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE +Y + Y PN+ + E R +W+ ++ + KP+I+CGD
Sbjct: 87 QEGRVITLEFEDYYFITVYTPNS--QNELARLPYRMQWEDDFLAYLKKLEEAKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +++ G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTSLVDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D +S WS + + RIDYF VSE L++R++ ++ L GS
Sbjct: 189 FY--PDAQGIYSWWSYRFSARAKNAGWRIDYFCVSESLEERLVDAKI------LTDVMGS 240
Query: 335 DHCPVSLEL 343
DHCP+ LE+
Sbjct: 241 DHCPIVLEM 249
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 153/318 (48%), Gaps = 59/318 (18%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ + K LK +WN + L +K + +++ PD++ LQE + P
Sbjct: 11 TSPSGKPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSENKLPA 64
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 151
QEL P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 65 ELQEL---------------------PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 101
Query: 152 FSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CS 206
+ + +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S
Sbjct: 102 YGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLAS 159
Query: 207 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 160 RKPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQA 204
Query: 267 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 326
L D++R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 205 VPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL 263
Query: 327 ELEGFYGSDHCPVSLELS 344
GSDHCP++L L+
Sbjct: 264 ------GSDHCPITLYLA 275
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 143/311 (45%), Gaps = 71/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + + F +F + D +QE + A + A
Sbjct: 1 MKFISWNVNGIRACLGKG---FLDFFHQIEADFFCIQETKCQAGQVELA----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+Y+ +W+ A K Y+GTA+ K P V + + D
Sbjct: 47 ------------------LDDYEQYWNYAQKKGYSGTAIFTKHT--PLSVMYGVGDEDSQ 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
GR+I E++ FYL+N Y PN + + R W+ R+ ++ S KP+++CGD
Sbjct: 87 DEGRIITLEYQNFYLVNVYTPNA--QRDLARLPLRLTWEDRLAGYLQDLNSKKPVVYCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ + K + G GFT ER +F +L G +D++R+
Sbjct: 145 LNVAHTEIDLKNA---------------KSNVGNSGFTYEERAKFSELLASG-FVDSFRY 188
Query: 276 LH-KEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
H E D F+W + + K R + + RIDYFIVSE+LK++I + H
Sbjct: 189 KHPNETDH---FTW-WSYMNKVRERNIGWRIDYFIVSEQLKNQIDQATIHPH------IM 238
Query: 333 GSDHCPVSLEL 343
GSDHCP+ L+L
Sbjct: 239 GSDHCPIELQL 249
>gi|335430178|ref|ZP_08557073.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
gi|334888594|gb|EGM26891.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
Length = 251
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 151/312 (48%), Gaps = 74/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L +K + EF N + D+ A+QE T
Sbjct: 1 MKLVSWNVNGLRACMKKGFKEFFN---EMNADLFAIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
K E+K F+ Y +W+ AD K Y+GT + K+ +P V + ++ +
Sbjct: 37 KMQEEQKTF--------DFEGYHEFWNCADKKGYSGTLIYSKQ--KPLNVVYGIDGSKYN 86
Query: 158 -DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR+I EF+ F+ + Y PN+ + R +++ + ++ + S KP+I CGD
Sbjct: 87 DEGRIITLEFKNFFFVTAYVPNS--QRSLARLDYRMEFEDDFRAYLKKLDSLKPVIMCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+++P K + GFTI ER+++ ++L EG D+YR+
Sbjct: 145 LNVAHREIDLTNP---------------KNNEKNAGFTIEERRKYQSLLDEG-FTDSYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK----DRIIACEMQGHGIELEGF 331
LH EK +S+ N + R RIDYF++S +L+ D II + +
Sbjct: 189 LHPEKVEYSWWSYMFN--ARKRNIGWRIDYFVISNKLRGQLNDSIIHTQTE--------- 237
Query: 332 YGSDHCPVSLEL 343
GSDHCP+SL++
Sbjct: 238 -GSDHCPISLDI 248
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 142/310 (45%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K ++WN N L VK+ F + D D+ +QE ++ D P HQ
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFNELDADIFCVQETKLQEGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---- 155
+W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAEKKGYSGTAVFTKR--EPVAVSYGLGIPEF 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+GRVI E+E F+L+ Y PN+ + E R WD + +V Q + KP+I+CG
Sbjct: 86 DQEGRVITLEYEKFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIFCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ + ++ + GFT ER++F +L+ G D YR
Sbjct: 144 DLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQSG-FTDTYR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +K+ + WS + RIDYF+ S+ L ++ ++ +GS
Sbjct: 188 YFYPDKEGVYSW-WSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTE------IFGS 240
Query: 335 DHCPVSLELS 344
DHCP+ L+L+
Sbjct: 241 DHCPIELDLN 250
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 146/309 (47%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F +F D D+ +QE ++ AP+
Sbjct: 1 MKLISWNVNGLRACVKKG---FEDFFKEADADIFCVQETKLQEGQIDFAPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV--SFSLEKTD 158
Y+ +W+ A+ K Y+GTA+ KK P KV +E+ D
Sbjct: 50 ---------------------YECYWNYAEKKGYSGTAVFTKK--HPLKVWNGIGMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
GRVI EFE F+ + Y PN+ + E R KW+ +E++ + KP+I GD
Sbjct: 87 QEGRVITLEFEDFFFVTVYTPNS--QSELKRLDYRMKWEDDFREYLQELDKEKPVIMTGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P+ NK++ GFT ER +F +L G +D++R+
Sbjct: 145 LNVAHEEIDLKNPK------------TNKKN---AGFTQEERNKFTELLGAG-FVDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E + ++ WS + + RIDYF+VSE K++I I + GS
Sbjct: 189 LNPE--LAGAYTWWSYRFKAREKDAGWRIDYFVVSERWKEKI------EDAIIYKTVMGS 240
Query: 335 DHCPVSLEL 343
DHCP+ L++
Sbjct: 241 DHCPIGLQM 249
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 60/314 (19%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E +++ +K ++WN + F+ + +PDV+ LQE ++ N
Sbjct: 97 EPKVEENQMKIISWNVAGFKSVLSKG---FTECVEKENPDVLCLQETKI----------N 143
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+K D K Y+ + AD K + GT +L KK +P ++F
Sbjct: 144 PSNIKKDQMP-----------------KGYEYHFIEADQKGHHGTGVLTKK--KPNAITF 184
Query: 153 SL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG- 207
+ +GRVI E+ FY++NTY PN G + + R ++WD Q ++ + +
Sbjct: 185 GIGIAKHDNEGRVITLEYVQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNAT 244
Query: 208 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 267
KP+IWCGDLNV+H EID+ +P K + GFTI ER F L++G
Sbjct: 245 KPIIWCGDLNVAHTEIDLKNP---------------KTNKKSAGFTIEERTSFSNFLEKG 289
Query: 268 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
+D+YR + K+ F WS G+ + R+DYF+VS+ L D I +
Sbjct: 290 -YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV- 346
Query: 328 LEGFYGSDHCPVSL 341
GSDHCP+ +
Sbjct: 347 ----MGSDHCPIGV 356
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMITVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L+ G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYF+VS+ L+ ++ E+ GS
Sbjct: 189 FY--PDLEHAYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQT------EGS 240
Query: 335 DHCPVSLEL 343
DHCPV L L
Sbjct: 241 DHCPVVLFL 249
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus]
Length = 630
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 113/234 (48%), Gaps = 30/234 (12%)
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--GRVILAEFETFYLLNTYAPNN 179
Y +W +D YAG + K + E+ D GR+I AE+E FYL+ TY PN
Sbjct: 422 YHAYWLSSDKDGYAGVGIYTTKLAMNVQYGLQNEELDSEGRIITAEYEQFYLICTYVPNA 481
Query: 180 GWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 238
G K S +R KW+ +E V KP+I CGD+NV+H EID+++P
Sbjct: 482 GRKLV--SLPKRLKWNDEFREHVKALDEKKPVIICGDMNVAHNEIDLTNP---------- 529
Query: 239 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 298
K + GFT ER +L +G +D +R H EK +S+ N K G
Sbjct: 530 -----KTNKKNAGFTEEERAGMTELLGDG-FVDTFRHFHPEKVAYTFWSYMANSRAKNVG 583
Query: 299 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 352
R+DYFIVSE L I ++G YGSDHCP++L L S+D K
Sbjct: 584 --WRLDYFIVSERLLPSICDSSIRGE------VYGSDHCPIALYLHLTSADKPK 629
>gi|326804146|ref|YP_004321964.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
gi|326650889|gb|AEA01072.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
Length = 281
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 148/324 (45%), Gaps = 69/324 (21%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + S I +DPD+IA+QE ++ A G K HQ
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAQLSRQVLETIDQYDPDLIAIQETKLSAKGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQP----- 147
E + EE P + N W S A YAG +L KK +P
Sbjct: 58 E-------ALEEWF--------PDYNN--AWVSSVEPARKSYAGNMVLYKKSLEPIITYP 100
Query: 148 KKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQ 204
K + ++GR+I +F FY Y PN G N +R R+ WD++ +++ Q
Sbjct: 101 KIGAPEPMDSEGRIITLDFGAFYFTQVYTPNAG-----NGLKRLAERQVWDEKYAQYLSQ 155
Query: 205 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 263
KPLI GD NV+H+EID++HPE + GFT ER F +
Sbjct: 156 LDQEKPLIATGDFNVAHKEIDLAHPE---------------NNHKSAGFTDEERSGFTKL 200
Query: 264 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEM 321
L +G D +R +H D++ +SW + K RIDYF+VS+ + + + EM
Sbjct: 201 LDQG-FTDTFRHIH--GDVEGVYSWWAQRVKTSKINNSGWRIDYFLVSDRIANAVEKSEM 257
Query: 322 QGHGIELEGFYGSDHCPVSLELSE 345
G DH P+ LE+S+
Sbjct: 258 IDSGTR------QDHTPIYLEISD 275
>gi|352518551|ref|YP_004887868.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
gi|348602658|dbj|BAK95704.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
Length = 275
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 148/323 (45%), Gaps = 71/323 (21%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N + S + I +D DVIA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTSDSNRAQLSRDVLDTIAEYDADVIAIQETKLSANGPT------- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+K I + A P +Y+I W A YAGT L K +P ++
Sbjct: 54 -----------QKHIDILAERLP---DYEIAWRSSEEPARKSYAGTMFLYKNMLEPT-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F +GR+I EF ++ Y PN G + ++R WD++ +E+++
Sbjct: 99 FPEIGAPDTMDQEGRIITLEFPNCFVTQVYTPNAGGNLDR--LEKREAWDEKYREYLVAL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPE--FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
KP+I GD NV+H EID++HP+ F+A GFT ER F
Sbjct: 157 DEQKPVIASGDYNVAHTEIDLAHPDRNHFSA-----------------GFTDEERTNFTT 199
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G D +R++H D++ +SW G + K RIDYF+VS+ LK+++I E
Sbjct: 200 LLNNG-FADTFRYVH--GDIEGHYSWWGQRVKTSKINNSGWRIDYFLVSDRLKNQVITSE 256
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
M G DH P+ LE+
Sbjct: 257 MIDSGKR------QDHTPIFLEV 273
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 142/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F + D D+ LQE + A EL
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFQAQDADIFCLQETKCSAG--------QVEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ KK +P VS+ L
Sbjct: 46 -----------------DLKGYHQYWNYAEKKGYSGTAIFTKK--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K E R W+ + ++ + + KP++ CGD
Sbjct: 87 QEGRVICLEFEDFYMVTVYTPNS--KNELERLDYRMIWEDEFRNYLSKLNEKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER +F +L+ G D++R+
Sbjct: 145 MNVAHEEIDLKNP---------------KTNRRNAGFTDEERNKFTELLQAG-FTDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ D +S WS + RIDYF+VS + K++I E+ E E GS
Sbjct: 189 LY--PDTLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQE---GS 240
Query: 335 DHCPVSLEL 343
DHCPV+L L
Sbjct: 241 DHCPVALYL 249
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 142/310 (45%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K ++WN N L VK+ F + D D+ +QE ++ D P HQ
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFNELDADIFCVQETKLQEGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---- 155
+W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAEKKGYSGTAVFTKR--EPVAVSYGLGIPEF 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+GRVI E+E F+L+ Y PN+ + E R WD + +V Q + KP+I+CG
Sbjct: 86 DQEGRVITLEYEEFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIFCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ + ++ + GFT ER++F +L+ G D YR
Sbjct: 144 DLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQSG-FTDTYR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +K+ + WS + RIDYF+ S+ L ++ ++ +GS
Sbjct: 188 YFYPDKEGVYSW-WSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTE------IFGS 240
Query: 335 DHCPVSLELS 344
DHCP+ L+L+
Sbjct: 241 DHCPIELDLN 250
>gi|408411522|ref|ZP_11182670.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|409350015|ref|ZP_11233286.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
gi|407874302|emb|CCK84476.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|407877730|emb|CCK85344.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
Length = 275
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 57/317 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + I T DPD++A+QE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGILTKLHDLDPDILAIQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
+L + E + R+ P K Y AGT L KK +P +
Sbjct: 58 KLLAELFP---EYTYVWRSSVEPARKGY-----------AGTMYLYKKDLEPTVTYPEIG 103
Query: 156 K-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 209
+GR+I EF FY+ Y PN+G R++WD+ + ++ + KP
Sbjct: 104 APEPMDAEGRMITLEFPDFYVTEVYTPNSG--TGLKRLDERQEWDQCYRTYLEKLDAQKP 161
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
++ GD N +++EID+ HPE + GFT ER FG +L G
Sbjct: 162 VLASGDFNAAYQEIDLKHPE---------------NNHHSAGFTDEERAGFGQLLGSG-F 205
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
+D +R LH + ++ +SW + K RIDY++VSE L D++ EM G
Sbjct: 206 VDTFRLLHGQ--VEGVYSWWAQRVRSAKANNSGWRIDYWLVSERLADKVTKSEMIDTGER 263
Query: 328 LEGFYGSDHCPVSLELS 344
+DHCP+ LE+S
Sbjct: 264 ------ADHCPILLEVS 274
>gi|365130338|ref|ZP_09341407.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620249|gb|EHL71547.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
Length = 251
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 139/307 (45%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F++ F DV+ LQE +M ++ +P +
Sbjct: 1 MKLISWNVNGFRAILGKG---FADIFEGFGADVVCLQETKMQPGQAEFSPPGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK----T 157
+Q W+S Y+GTA+ + +P V + + K
Sbjct: 51 ---------------------HQYWYSAEKKGYSGTAVFTR--MEPLSVRYGIGKEEHSH 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GR I EFE F+L+N Y PN+ + E R +W+ ++ ++ + KP+++CGDL
Sbjct: 88 EGRAITLEFEQFFLVNVYTPNS--QNELARLPYRMQWEDDLRAYLCALDTEKPVVYCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K++ GF+ ER++ +L G +D +R L
Sbjct: 146 NVAHREIDLKNP---------------KQNIHSAGFSYEERQKMTDLLMSG-FVDTFRAL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ + + WS + RIDYFIVSE L+++I G + YGSDH
Sbjct: 190 YPDAAGRYTW-WSYFRRARETNAGWRIDYFIVSERLREKI------GDALIYSDVYGSDH 242
Query: 337 CPVSLEL 343
CPV L L
Sbjct: 243 CPVGLVL 249
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 146/307 (47%), Gaps = 65/307 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V+ F ++ D DV +QE ++ QE + D
Sbjct: 3 KMISWNVNGLRACVEKG---FLDYFKEMDADVFCIQESKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
L+ P + Y W+ A+ K Y+GTAL K+ +P V++ +
Sbjct: 46 ------------LTLPGYHQY---WNYAEKKGYSGTALFTKE--KPLSVAYGINAEEHDR 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AE+ +Y++ Y PN+ + E R W+ + ++ + KP+I+CGDL
Sbjct: 89 EGRVIAAEYPEYYVVTCYTPNS--QNELARLPYRLTWEDAVLAYLKKLEEKKPVIFCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER++F +L+ G ID YR+
Sbjct: 147 NVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFTVLLESG-FIDTYRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ E++ + WS + + RIDYF VSE LKDR+ + + + GSDH
Sbjct: 191 YPEQEGIYSW-WSYRFSARKKNAGWRIDYFCVSESLKDRLASAAIHTEVL------GSDH 243
Query: 337 CPVSLEL 343
CPV L +
Sbjct: 244 CPVELVI 250
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 148/312 (47%), Gaps = 71/312 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D DV +QE +M
Sbjct: 5 MKLISWNVNGLRACMNKG---FMDFFNTIDADVFCIQESKM------------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ ++ F NY+ +W+ A+ K Y+G A+ KK +P V++ +
Sbjct: 43 ----------QKEQATFDFPNYEEYWNSAEKKGYSGVAIFSKK--KPLSVAYDMGISHHD 90
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCG 214
+GR+I AE+ F+L+N Y PN+ K E + R +W+ + F+ L+ + KP+I CG
Sbjct: 91 KEGRIITAEYNDFFLVNVYTPNS--KRELERLEYRMEWEDDFRNFLKNLEVT-KPVIVCG 147
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ +P K + GFT ER++ +L G D +R
Sbjct: 148 DLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSVLLDSG-FTDTFR 191
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+ H ++ +SW + +GK R RIDYF+ S+ L ++ + + +
Sbjct: 192 YFHPT--LEGAYSW-WSYMGKARENNTGWRIDYFLCSKALDSKLKSASIYPE------IF 242
Query: 333 GSDHCPVSLELS 344
GSDHCPV LE++
Sbjct: 243 GSDHCPVGLEIN 254
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 153/310 (49%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F ++ + DV +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVNADVFCIQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---T 157
+ + Y +W+ A K Y+GTA+ K+ +P VS+ + K
Sbjct: 46 Q-----------------LEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSYGVGKESED 86
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I CGDL
Sbjct: 87 EGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNSRKAVILCGDL 144
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P+ PN+ G GFTI ER + +L G +D +R+L
Sbjct: 145 NVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLASG-FLDTFRYL 188
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + + ++W + + K R + + RIDYFIVSE +K+ I + H + GS
Sbjct: 189 YPNQ--EGAYTW-WSYMNKVRERNIGWRIDYFIVSERMKNVIQESAIHPHVM------GS 239
Query: 335 DHCPVSLELS 344
DHCPV LEL+
Sbjct: 240 DHCPVMLELN 249
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
LK ++WN N L VK+ F + D D+ +QE ++ D P HQ
Sbjct: 6 LKLISWNVNGLRAAVKHG---FLDVFNELDADMFCVQETKLQEGQIDLDLPGYHQ----- 57
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---- 155
+W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 58 -------------------------YWNYAEKKGYSGTAIFTKR--EPVAVSYGLGIPEF 90
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+GRVI E+E F+L+ Y PN+ + E R WD + +V Q + KP+I+CG
Sbjct: 91 DQEGRVITLEYEEFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIFCG 148
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ + ++ + GFT ER++F +L+ G D YR
Sbjct: 149 DLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQSG-FTDTYR 192
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +K+ + WS + RIDYF+ S+ L ++ ++ +GS
Sbjct: 193 YFYPDKEGVYSW-WSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTE------IFGS 245
Query: 335 DHCPVSLELS 344
DHCP+ L+L+
Sbjct: 246 DHCPIELDLN 255
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 141/310 (45%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F D D+ LQE + K
Sbjct: 1 MKLISWNVNGIRACIGKG---FEESFAALDADIFCLQETKCQQGQVK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EKTD 158
L P + Y W+ A+ + Y+GTA+ KK +P V + + EK D
Sbjct: 45 -------------LELPGYYQY---WNYANRRGYSGTAVFTKK--EPLSVVYGIGIEKHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI E+E FYL+ Y PN+ + E + R W++ ++L+ KP+I CGD
Sbjct: 87 KEGRVITLEYEKFYLVTVYTPNS--QSELRRLEYRMHWEEDFLAYLLKLQESKPVICCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
NV+H+EID+ +P K + GFT ER FG +L+ G ID +R+
Sbjct: 145 FNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFGKVLESG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + + RIDYFI S +LKD++ E+ GS
Sbjct: 189 FY--PDVEGRYSWWSYRFKAREKNAGWRIDYFITSPQLKDKLKGAEIHSE------IMGS 240
Query: 335 DHCPVSLELS 344
DHCPV L+++
Sbjct: 241 DHCPVELQIT 250
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 150/319 (47%), Gaps = 62/319 (19%)
Query: 34 EENSKKDPLKF--VTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAP 91
EE + P F +WN + L V+ ++ + + PDV+ LQE + G++ P
Sbjct: 35 EETADGRPYNFKVTSWNVDGLRAWVRKGGLQW---LQSEAPDVVCLQETK---CGAESIP 88
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS-LADSKYAGTALLVKKCFQPKKV 150
LS P ++ W S + S Y+G LL + P +V
Sbjct: 89 SE---------------------LSQLPHLPHKFWGSAVGRSGYSGVGLLSRTA--PIRV 125
Query: 151 SFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
+ + +GRV+ AEF + Y+++ Y PN+G N Q R++WD + F+ +
Sbjct: 126 THGIGIEEHDAEGRVLTAEFPSVYVVSAYVPNSG--RGLNRLQYRQRWDGAFKSFLQRLD 183
Query: 207 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP++ CGDLNV+H EID+ +P K + PGFT ER FGA+L
Sbjct: 184 AQKPVVLCGDLNVAHREIDLRNP---------------KSNRRSPGFTQEERDAFGALL- 227
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
+G +D++R L+ + F W+ + R R+DYF++S L++ + +++
Sbjct: 228 DGGFLDSFRLLYPDVPNAYTF-WTYMGGARERNVGWRLDYFLLSTRLREALCDSKIRSAA 286
Query: 326 IELEGFYGSDHCPVSLELS 344
+ GSDHCP++L L+
Sbjct: 287 M------GSDHCPITLYLA 299
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 37/233 (15%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNT 174
+ Y +W+ A K Y+GTA+ KK +P V++ L +GR+I EFE FY++
Sbjct: 40 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIEEHDQEGRLITLEFEDFYMITL 97
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 233
Y PN+ K R KW+ + ++ + K +I+CGDLNV+H+EID+ +P
Sbjct: 98 YTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKTVIFCGDLNVAHKEIDLKNP----- 150
Query: 234 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 293
K + PGF+ ER++F IL+EG +D YR+L+ + + +SW +
Sbjct: 151 ----------KSNRKNPGFSDEEREKFTCILEEG-FVDTYRYLY--PNQEGAYSWWSYRM 197
Query: 294 GKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 198 GA-RAKNIGWRLDYFVVSERMKDQITEVKINSEVM------GSDHCPVELYIN 243
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 71/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + + F +F + D +QE + A + A
Sbjct: 1 MKFISWNVNGIRACLGKG---FLDFFHQIEADFFCIQETKCQAGQVELA----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y+ +W+ A K Y+GTA+ K P V + + D
Sbjct: 47 ------------------LDGYEQYWNYAQKKGYSGTAIFTKHT--PLSVKYGVGDEDSQ 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
GR+I E+E FYL+N Y PN + + R W++ + ++ S KP+++CGD
Sbjct: 87 DEGRIITLEYEDFYLVNVYTPNA--QRDLARLPLRLTWEEHLASYLQDLNSKKPVVYCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ + K + G GFT ER +F +L G +D++R+
Sbjct: 145 LNVAHTEIDLKNA---------------KSNIGNSGFTYEERAKFSELLASG-FVDSFRY 188
Query: 276 LH-KEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
H E D F+W + + K R + + RIDYFIVSE+LK++I + H
Sbjct: 189 KHPNETDH---FTW-WSYMNKVRERNIGWRIDYFIVSEQLKNQINQATIHPH------IM 238
Query: 333 GSDHCPVSLEL 343
GSDHCP+ L+L
Sbjct: 239 GSDHCPIELQL 249
>gi|357059246|ref|ZP_09120090.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
gi|355372575|gb|EHG19915.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 138/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+E + I L P ++ Y ++S Y+GTA+ + +P V++ +
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--IRPLSVNYGIGTPEHDH 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI EF YL+ Y PN+ K R W+ + F+L KP++ CGDL
Sbjct: 88 EGRVITMEFADVYLVTVYTPNS--KNALARLDYRMVWEDAFRAFLLDLRAKKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GFT ER +F +L G +D +R L
Sbjct: 146 NVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLNAG-FVDTFRAL 189
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D+ ++ WS + RIDYF+VSEEL++RI A E+ +GSD
Sbjct: 190 Y--PDVTGAYTWWSYLRHARETNAGWRIDYFLVSEELRERIAAAEIHAD------VFGSD 241
Query: 336 HCPVSLEL 343
HCPVSL L
Sbjct: 242 HCPVSLTL 249
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 143/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F + D LQE +M AG D
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKALNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+S P + +Y W+ AD K Y+GTA+ K +P V++ +
Sbjct: 45 -------------ISFPGYASY---WNYADKKGYSGTAIFTKH--KPLDVTYGIGMDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E + FYL+ Y PN+ ++ R KW+K Q+++ + KP++ CGD
Sbjct: 87 HEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEKDFQDYLHRLDRKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + R RIDYF++SE L+DR+ ++ GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------IMGS 239
Query: 335 DHCPVSLEL 343
DHCPV ++L
Sbjct: 240 DHCPVEVDL 248
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|424898885|ref|ZP_18322433.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|388593595|gb|EIM33832.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
Length = 249
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 143/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V N F D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVGKN---FKEDFAALDADFFCLQETKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
LS P +++Y W+ AD K Y+GTA+ K +P V+ +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKH--KPLTVTTGIGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E + FYL+ Y PN+ ++E R +W+ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEMDDFYLVTVYTPNS--QDELKRLAYRMQWETDFQAYLHKLDEHKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GF+ ER++ +L G D +R+
Sbjct: 145 MNVAHEEIDLKNP---------------KTNHHNAGFSDEEREKMTILLNNG-FTDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++S L+DR+ ++ +GS
Sbjct: 189 LYPEQ---VTYSWWSYRFKAREKNTGWRIDYFLISNRLRDRLKDAKIHTE------IFGS 239
Query: 335 DHCPVSLEL 343
DHCPV L L
Sbjct: 240 DHCPVELTL 248
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 161/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGSVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL LS +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQELS---------------GLS------HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------G 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|419718967|ref|ZP_14246261.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304836|gb|EIC96227.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 252
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 143/309 (46%), Gaps = 69/309 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 3 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
L P + +Y W+ A K Y+G A+ K +P V++ +
Sbjct: 46 ------------LDLPGYYDY---WNYATKKGYSGVAVFTKD--KPINVTYGIGIDEHDN 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AE++ FYL+ Y PN+ + R W+ ++VL+ KP+I+CGDL
Sbjct: 89 EGRVITAEYDEFYLITCYTPNS--QRGLTRLDYRMTWEDAFLDYVLKLEEKKPVIFCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER + IL G +D++R L
Sbjct: 147 NVAHKEIDLKNP---------------KTNRKNAGFTDEERAKMDIILSSG-FVDSFRVL 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ +K +SW + +G R K + RIDYFIVS +LKDRI ++ + GS
Sbjct: 191 YPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVL------GS 241
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 242 DHCPVELDI 250
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 144/309 (46%), Gaps = 71/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK+++WN N L +K F + + D LQE ++ HQ
Sbjct: 4 LKYISWNVNGLRACIKKG---FLDSFKNLNADCFCLQETKLQP---------HQ------ 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
L P + YQ W S Y+GTAL K +P VS+ +
Sbjct: 46 -----------IELDIPGY--YQYWNSAIKKGYSGTALFTK--IKPISVSYGMNIEEHDQ 90
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GR+I AEF+ +L+ Y PN+ + + + R KW+ + ++L+ + KP+I CGDL
Sbjct: 91 EGRLITAEFKNHFLVVCYTPNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVILCGDL 148
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+++P + GFT ERK+F +L+ G D +R+L
Sbjct: 149 NVAHKEIDLANPS---------------SNHKNAGFTDDERKKFSTLLENG-FTDTFRYL 192
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELEGFY 332
+ +K D WS + R RIDYF+VS++LK++I I E+Q
Sbjct: 193 YPDKK-DAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPEIQ---------- 241
Query: 333 GSDHCPVSL 341
GSDHCPV L
Sbjct: 242 GSDHCPVEL 250
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 144/312 (46%), Gaps = 69/312 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D+ +QE +M K+ + H
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKM----CKEQAQFH------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
F+NY+ +W+ A+ K Y+G +L K QP V++ + T
Sbjct: 47 ------------------FENYKEYWNSAEKKGYSGVVILSKT--QPINVAYDMGITYHD 86
Query: 158 -DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR+I AE+ FYL+N Y PN+ K E R KW+ + FV + K +I CGD
Sbjct: 87 KEGRIITAEYPHFYLVNVYTPNS--KRELERLDYRMKWEDDFRAFVKNLENHKSVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + A+L G ID +R+
Sbjct: 145 LNVAHQEIDLKNP---------------KTNRRNAGFTDEERNKMSALLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ + +SW + +GK R RIDYF+ S+ L + + H +G
Sbjct: 189 FYPT--LTGAYSW-WSYMGKARENNTGWRIDYFLCSQSLTPSLKDANIYPH------IFG 239
Query: 334 SDHCPVSLELSE 345
SDHCPV LEL +
Sbjct: 240 SDHCPVGLELKQ 251
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 66/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P++V + +
Sbjct: 51 ---------------------YHMYWNYAVKKGYSGTAVFSKQ--EPQRVMYGIGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE +++ Y PN K R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENMFVMTVYTPNA--KRGLERIDYRMQWEEDLLSYILELDQKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER F L+ G ID++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FIDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R RIDYF+VSE LKD+I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKDQIEDASISADVM------GS 241
Query: 335 DHCPVSLELS 344
DHCPV L ++
Sbjct: 242 DHCPVELMIN 251
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 147/314 (46%), Gaps = 77/314 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+EL+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKELEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 ---GSDHCPVVLFL 249
>gi|345314093|ref|XP_001516262.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Ornithorhynchus anatinus]
Length = 320
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 155/318 (48%), Gaps = 59/318 (18%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
S + + LK +WN + L VK + +++ PD++ LQE + A SK P
Sbjct: 55 SSSSGQPATLKICSWNVDGLRAWVKK---KGLDWVREEAPDILCLQETK--CAESKLPP- 108
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 151
ELKD LS P ++ W + AD + Y+G LL ++ +P VS
Sbjct: 109 ---ELKD---------------LSDFP---HRYWAAPADKEGYSGVGLLSRR--RPLSVS 145
Query: 152 FSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCS 206
+ + +GRVI+AEFE F L+ Y PN+G R++WD+ + F+ Q +
Sbjct: 146 YGIGEEEHDQEGRVIVAEFEAFVLVTVYVPNSG--RGLVRLDYRQRWDQAFRRFLQAQAA 203
Query: 207 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 204 RKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLGT 248
Query: 267 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 326
L D++R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 249 VDLADSFRHLYPAAAYAYTF-WTYMMNARSKNVGWRLDYFLLSRALLPSLCDSKIRSAAL 307
Query: 327 ELEGFYGSDHCPVSLELS 344
GSDHCP++L L+
Sbjct: 308 ------GSDHCPITLYLA 319
>gi|385811883|ref|YP_005848274.1| exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
gi|299782782|gb|ADJ40780.1| Exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
Length = 279
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 144/326 (44%), Gaps = 65/326 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +S+ + I PDVIA+QE ++ +G K HQ
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y + W A YAGT L K+ PK
Sbjct: 58 ------------------GVLAELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPKVTY 99
Query: 152 FSL---EKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++ E D GR+I EFE FYL Y PN+G + R++WD R +E++ +
Sbjct: 100 PTIGAPEPMDKEGRIITLEFENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+HEEID++HP + GFT ER++F A+L
Sbjct: 158 RQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALLA 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D++R LH D +SW K RIDY++VS+ L D++++ M
Sbjct: 203 AG-FTDSFRSLH--PDETGAYSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMID 259
Query: 324 HGIELEGFYGSDHCPVSLELSEASSD 349
G DH P+ L+++ ++D
Sbjct: 260 SGER------RDHAPIQLDINIPAAD 279
>gi|184154634|ref|YP_001842974.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227513882|ref|ZP_03943931.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|183225978|dbj|BAG26494.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227087743|gb|EEI23055.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
Length = 279
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 144/326 (44%), Gaps = 65/326 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +S+ + I PDVIA+QE ++ +G K HQ
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y + W A YAGT L K+ PK
Sbjct: 58 ------------------GVLAELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPKVTY 99
Query: 152 FSL---EKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++ E D GR+I EFE FYL Y PN+G + R++WD R +E++ +
Sbjct: 100 PTIGAPEPMDEEGRIITLEFENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+HEEID++HP + GFT ER++F A+L
Sbjct: 158 RQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALLA 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D++R LH D +SW K RIDY++VS+ L D++++ M
Sbjct: 203 AG-FTDSFRSLH--PDETGAYSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMID 259
Query: 324 HGIELEGFYGSDHCPVSLELSEASSD 349
G DH P+ L+++ ++D
Sbjct: 260 SGER------RDHAPIQLDINIPAAD 279
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 146/314 (46%), Gaps = 77/314 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 ---GSDHCPVVLIL 249
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|tpg|DAA25469.1| TPA: DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|440900925|gb|ELR51950.1| DNA-(apurinic or apyrimidinic site) lyase [Bos grunniens mutus]
Length = 318
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSG---LSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------G 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 139/309 (44%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V EF D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVG---KEFEQQFKDLDADFFCLQETKMQA-GQLDIS---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y+ +W+ AD K Y+GTA+ K +P V++ +
Sbjct: 47 ------------------FLGYESYWNYADKKGYSGTAIFTKH--KPLSVTYGINIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E + FYL+ Y PN+ ++ R KW+ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHQEIDLKNP---------------KTNRKNAGFTDEEREKMTQLLSNG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++SE LKDR+ ++ GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTE------IMGS 239
Query: 335 DHCPVSLEL 343
DHCPV + L
Sbjct: 240 DHCPVEIIL 248
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 146/314 (46%), Gaps = 77/314 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLTVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 ---GSDHCPVVLIL 249
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 148/322 (45%), Gaps = 75/322 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITT--------FDPDVIALQEVRMPAAGSKDAPKN 93
+KFV+WN N L VK N I+ D D LQE +M AG D
Sbjct: 1 MKFVSWNVNGLRACVKPKVDAEGNVISKGFEAYFNELDADFFCLQETKM-QAGQLDLQ-- 57
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS- 151
F Y+ +W+ A+ K Y+GTA+ K +P V+
Sbjct: 58 --------------------------FNGYRSYWNYAERKGYSGTAIYTKH--EPMNVAC 89
Query: 152 -FSLEKTD--GRVILAEFETFYLLNTYAPNNG----WKEEENSFQRRRKWDKRIQEFVLQ 204
+E+ D GRVI E+ FYL+N Y PN+ + + R KW++ + ++ +
Sbjct: 90 GMGIEEHDNEGRVITLEYPEFYLVNVYTPNSQESLPGEVKPKRLGYRMKWEEDFRAYIKR 149
Query: 205 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 263
+ KP+I CGDLNV+H+EID+ + K + GFT ER++ +
Sbjct: 150 LNETKPVIVCGDLNVAHQEIDIKNA---------------KTNRNNAGFTDEEREKMTIL 194
Query: 264 LKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
L G ID +R ++ E+ + +S WS + R RIDYF+VSE L+++I+ +
Sbjct: 195 LDNG-FIDTFRTMYPEQVI---YSWWSYRFRARERNTGWRIDYFLVSERLRNQIVDARIH 250
Query: 323 GHGIELEGFYGSDHCPVSLELS 344
YGSDHCPV LEL+
Sbjct: 251 TE------IYGSDHCPVELELN 266
>gi|373465510|ref|ZP_09556970.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
gi|371760225|gb|EHO48917.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
Length = 256
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 136/307 (44%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F D D +QE +M A
Sbjct: 5 MKFISWNVNGLRAVVK---KDFDKTFNDLDADFFCIQETKMQAG---------------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
AL+ P + Y ++ A+ K Y+GTA+ K P V + ++ +
Sbjct: 46 ----------QLALTLPGYHQY---FNYAERKGYSGTAIFTKHA--PLNVYYGIQSDEFD 90
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
GR I E+ TFYL+ +Y PN+G K + F R WD Q+++ + KP+I CGD
Sbjct: 91 HEGRAITLEYPTFYLVTSYVPNSGAKLKRLDF--RMGWDVAFQQYLANLNKEKPVILCGD 148
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+ ID+ +P+ + GFT ER F L +G +D +R
Sbjct: 149 LNVAHKTIDLKNPQ---------------TNHHNAGFTDEERNSFSHFLDQG-FMDTFR- 191
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H DM +S WS + R RIDYF+ S L D I ++ L +GS
Sbjct: 192 -HFYPDMTDIYSWWSYRFHARDRNAGWRIDYFVASNRLADHISDSKI------LTDVFGS 244
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 245 DHCPVEL 251
>gi|350268411|ref|YP_004879717.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
gi|348593251|dbj|BAK97211.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
Length = 250
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 142/310 (45%), Gaps = 70/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L + F +F + D DVI LQE +M P D P
Sbjct: 1 MKLISWNVNGLRACIGKG---FLDFCKSADADVICLQETKMKPEQADFDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADS-KYAGTALLVKKCFQPKKVSFSL----E 155
Y+ +W+ AD Y+GTA+ + P +++
Sbjct: 49 ---------------------GYEKFWNSADKPGYSGTAVFTR--VPPLNMTYDFGGDEY 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+ +GRVI AEFE FYL+ Y PN ++E R +W+ ++++ + KP++ CG
Sbjct: 86 RHEGRVITAEFEEFYLVCCYTPNA--QDELRRIDYRMRWEDDFRDYLRELDRVKPVVLCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ +P K + G GF+ ER + +L G D +R
Sbjct: 144 DLNVAHEEIDLKNP---------------KTNRGHAGFSDQERGKMTELLSTG-FSDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ EK +S WS + + RIDYFIVS +++++ + + +G
Sbjct: 188 TLYPEK---IAYSWWSYRFRAREKNAGWRIDYFIVSRRFQEKVV------DSLICDQVFG 238
Query: 334 SDHCPVSLEL 343
SDHCPV LEL
Sbjct: 239 SDHCPVGLEL 248
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 70/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K N + + +PD+IALQE + D P Q
Sbjct: 59 IKIISWNVAGLRALIKKNG---HSVLVEENPDIIALQETKCV-----DVPSELQN----- 105
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLE---KT 157
Y + + ++ S + G LL K+ +P KV++S + K
Sbjct: 106 --------------------GYHTFLNASEKSGHGGVLLLTKE--EPIKVTYSFDDKSKC 143
Query: 158 D------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 210
D GR+I+AE+E++YL+N Y PN+G + +R+ WD F+ + KP+
Sbjct: 144 DIDGNGKGRIIIAEYESYYLINAYVPNSG--RGLVNLDKRKIWDDYYLTFIKKLDLSKPV 201
Query: 211 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 270
++ GDLNV+H+EID+++P+ NK GFT ER F +L G +
Sbjct: 202 VYVGDLNVAHQEIDLANPK----------TNRNK----TAGFTDQERNDFTRLLDAG-FV 246
Query: 271 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 330
D +R L+ +K+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 247 DVFRRLNPDKEGAYTF-WSNMHNAREKNVGWRLDYFVVSERIMNKVKKCDI------LHS 299
Query: 331 FYGSDHCPVSLEL 343
GSDHCP+SL +
Sbjct: 300 IKGSDHCPLSLTI 312
>gi|402312986|ref|ZP_10831909.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400367562|gb|EJP20578.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 258
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 141/309 (45%), Gaps = 69/309 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 9 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 51
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
L P + +Y W+ A K Y+G A+ K +P V++ +
Sbjct: 52 ------------LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGIGIEEHDN 94
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AE+E FYL+ Y PN+ + R W+ ++L+ KP+I+CGDL
Sbjct: 95 EGRVITAEYEDFYLITCYTPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIFCGDL 152
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER + IL G D++R L
Sbjct: 153 NVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDVILTSG-FCDSFRVL 196
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ +K +SW + +G R K + RIDYFIVS++LKDRI ++ GS
Sbjct: 197 YPDKTD--AYSW-WSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ILGS 247
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 248 DHCPVELDI 256
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 140/309 (45%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L V F D D LQE +M
Sbjct: 1 MRFISWNVNGLRACVSKG---FEESFKALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L F+ Y +W+ A+ K Y+GTA+ K +P V++ L
Sbjct: 39 ---QEGQLNLQ-------FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI E E FYL+ Y PN+ ++E R W+ +++ K P+I CGD
Sbjct: 87 HEGRVITLEMEDFYLITVYTPNS--QDELRRLNYRMTWEDDFLKYIQGLDAKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER++ L G D++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTITLNSG-FTDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E+ +S WS + + RIDYF++S L+DR++ ++ YGS
Sbjct: 189 KYPEQ---VTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE------VYGS 239
Query: 335 DHCPVSLEL 343
DHCPV L+L
Sbjct: 240 DHCPVELDL 248
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L + F D D+ ++QE +M P D P
Sbjct: 1 MKLISWNVNGLRACLGKG---FLESFAALDADIFSIQETKMQPGQAELDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
Y+ +W+ A+ K Y+GTA+ + +P V++ +
Sbjct: 49 ---------------------GYKQYWNSAEKKGYSGTAVFTR--LEPLNVTYGIGSEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
+GR I EFE FYL+N Y PN + E R +W+ ++ ++L+ S KP+I+CG
Sbjct: 86 DREGRAITLEFEDFYLVNCYVPNA--QRELTRLDWRMEWEDALRAYLLELDSRKPVIYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + K + G GFT ER + +L+ G +D++R
Sbjct: 144 DLNVAHQEIDLKNA---------------KSNRGNAGFTDEERAKMTQLLEAG-FVDSFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ +K + WS + + RIDYF+VS+ + D+I G I GS
Sbjct: 188 HLYPDKTGAYSW-WSYMFHAREKNAGWRIDYFLVSKSIADKI------GDSIIHPEIMGS 240
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|337735433|ref|YP_004634880.1| exodeoxyribonuclease ExoA [Clostridium acetobutylicum DSM 1731]
gi|384456943|ref|YP_005669363.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|336292303|gb|AEI33437.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum DSM 1731]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D DV LQE ++ +
Sbjct: 1 MKLISWNVNGLRACITKG---FLDYFKEVDADVFCLQETKIQEGQVE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EKTD 158
L P + ++ W+ A+ K Y+GTA+ KK +P S+ + EK D
Sbjct: 45 -------------LELPGYYDF---WNYAEKKGYSGTAIFTKK--KPISYSYGINEEKHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE FY++ Y PN+ KE+ + R +W+ + ++ KP+I CGD
Sbjct: 87 KEGRVITLEFEDFYMVTVYTPNS--KEKLARLEYRMEWEDSFRNYLKALDEKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H EID+ +P K + GF+ ER +F +L+ G ID YR+
Sbjct: 145 MNVAHTEIDLKNP---------------KTNTKNAGFSPEERSKFTELLEAG-FIDTYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ + WS + + RIDYF SE LKD++++ ++ + GSD
Sbjct: 189 FYPDKEGIYSW-WSYRFKAREKNAGWRIDYFCTSERLKDKLVSADIHTEVM------GSD 241
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 242 HCPVELVI 249
>gi|404483949|ref|ZP_11019164.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
gi|404342961|gb|EJZ69330.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
Length = 276
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 141/309 (45%), Gaps = 69/309 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 27 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 69
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
L P + +Y W+ A K Y+G A+ K +P V++ +
Sbjct: 70 ------------LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGIGIEEHDN 112
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AE+E FYL+ Y PN+ + R W+ ++L+ KP+I+CGDL
Sbjct: 113 EGRVITAEYEDFYLITCYTPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIFCGDL 170
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER + IL G D++R L
Sbjct: 171 NVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDVILTSG-FCDSFRVL 214
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ +K +SW + +G R K + RIDYFIVS++LKDRI ++ GS
Sbjct: 215 YPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ILGS 265
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 266 DHCPVELDI 274
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 141/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMITVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L+ G D +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESG-FTDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYFIVS+ L ++ E+ GS
Sbjct: 189 FY--PDLEHAYSWWSYRANARKNNTGWRIDYFIVSKALDKYLVDAEIHAQT------EGS 240
Query: 335 DHCPVSLEL 343
DHCPV L L
Sbjct: 241 DHCPVVLFL 249
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 140/309 (45%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L V F D D LQE +M
Sbjct: 1 MRFISWNVNGLRACVSKG---FEESFKALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L F+ Y +W+ A+ K Y+GTA+ K +P V++ L
Sbjct: 39 ---QEGQLNLQ-------FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI E E FYL+ Y PN+ ++E R W+ +++ K P+I CGD
Sbjct: 87 HEGRVITLEMEDFYLITVYTPNS--QDELRRLDYRMTWEDDFLKYIQGLDAKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER++ L G D++R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTITLNSG-FTDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E+ +S WS + + RIDYF++S L+DR++ ++ YGS
Sbjct: 189 KYPEQ---VTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE------VYGS 239
Query: 335 DHCPVSLEL 343
DHCPV L+L
Sbjct: 240 DHCPVELDL 248
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 259
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 143/312 (45%), Gaps = 69/312 (22%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
D K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 7 DMKKMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE----------- 52
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL---- 154
L P + +Y W+ A K Y+G A+ K +P V++ +
Sbjct: 53 ---------------LDLPGYYDY---WNYATKKGYSGVAVFTKD--KPINVTYGIGIDE 92
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
+GRVI AE++ FYL+ Y PN+ + R W+ ++ L+ KP+I+C
Sbjct: 93 HDNEGRVITAEYDEFYLITCYTPNS--QRGLTRLDYRMTWEDAFLDYALKLEEKKPVIFC 150
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H+EID+ +P K + GFT ER + IL G +D++
Sbjct: 151 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKMDIILSSG-FVDSF 194
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 331
R L+ +K +SW + +G R K + RIDYFIVS +LKDRI ++ +
Sbjct: 195 RLLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVL----- 246
Query: 332 YGSDHCPVSLEL 343
GSDHCPV L++
Sbjct: 247 -GSDHCPVELDI 257
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 145/310 (46%), Gaps = 71/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +TWN N L + F++F+T D++ +QE +M
Sbjct: 1 MKLITWNVNGLRACMNKG---FADFMTAAGADIVCVQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
R +S F Y +W+ A K Y+GTA+ K +P V++ L +
Sbjct: 39 ----------QREQASFDFPGYHEYWNSAVKKGYSGTAVFSKT--EPLSVTYGLGQEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPLIW 212
+GRVI AE+ FYL+N Y PN+ + + R +W+ Q++ C+G KP+I
Sbjct: 87 QEGRVITAEYPDFYLVNVYTPNS--QRGLTRLEYRMQWEDVFQDY---CAGLARKKPVIV 141
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGDLNV+ + ID+ +P+ N ++ GFT ER +F L G +D+
Sbjct: 142 CGDLNVAAQPIDLKNPD------------SNHKN---AGFTDEERAKFQQFLDHG-FVDS 185
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+R L+ +K+ + WS + R RIDYF+VS+ KDRI + +
Sbjct: 186 FRSLYPDKEGAYTW-WSYMFKARERNAGWRIDYFLVSQNGKDRIQDVIIHNEVM------ 238
Query: 333 GSDHCPVSLE 342
GSDHCPV LE
Sbjct: 239 GSDHCPVELE 248
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 141/308 (45%), Gaps = 67/308 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F + D D+ +QE ++ A G D
Sbjct: 3 KMISWNVNGLRACVGKG---FLDVFRKLDADIFCIQESKLQA-GQID------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
L P + Y WS AD K Y+GTAL K+ +P V + L
Sbjct: 46 ------------LDIPGYYQY---WSYADKKGYSGTALFSKE--EPISVVYGLGIDAHDH 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AE+E +Y+L Y PN+ + E R +W+ ++ + KP+I+CGDL
Sbjct: 89 EGRVITAEYEDYYVLTCYTPNS--QNELARLPYRMEWEDAFLAYLKKLEEKKPVIFCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P N+++ GFT ER +F A+L G ID YR
Sbjct: 147 NVAHREIDLKNPR------------TNRKN---AGFTDEERGKFSALLDAG-FIDTYR-- 188
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H D + +S WS + + RIDYF VSE L+DR+++ + GSD
Sbjct: 189 HFYPDTEGVYSWWSYRFKAREKNAGWRIDYFCVSESLEDRLVSASIHTE------IMGSD 242
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 243 HCPVELVI 250
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 67/308 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 13 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 55
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKTD 158
L P + +Y W A Y+G A+ K +P V++ + +
Sbjct: 56 ------------LDLPGYYDY--WNYAAKKGYSGVAVFTKD--KPIGVTYGIGIEEHDNE 99
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GRVI AE++ FYL+ Y PN+ + R W+ ++VL+ KP+I+CGDLN
Sbjct: 100 GRVITAEYDDFYLITCYTPNS--QRGLTRLDYRMAWEDAFLDYVLKLEEKKPVIFCGDLN 157
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+ +P K + GFT ER + +L G D++R L+
Sbjct: 158 VAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDIVLSSG-FADSFRVLY 201
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+K + +SW + +G R K + RIDYFIVS++LKDRI ++ GSD
Sbjct: 202 PDK--EGAYSWW-SYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ILGSD 252
Query: 336 HCPVSLEL 343
HCPV L++
Sbjct: 253 HCPVELDI 260
>gi|312870577|ref|ZP_07730692.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417885012|ref|ZP_12529173.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
gi|311093892|gb|EFQ52221.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341596968|gb|EGS39554.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
Length = 275
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 141/324 (43%), Gaps = 73/324 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAP-KNH 94
+KF++WN +S+ + I+ +PD +A+QE ++ SK+ P K H
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRAVLKKISALEPDAVAIQETKL----SKNGPTKKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
++ D F YQI W A YAGT L + +QP
Sbjct: 57 LQVLADL------------------FPGYQIAWRSSVEPARKGYAGTMYLYRDQYQPTVT 98
Query: 151 SFSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 202
+ ++GR+I EF F+L Y PN+G N +R R +WD ++++
Sbjct: 99 YPQIGAPEPMDSEGRIITLEFHDFFLTEVYTPNSG-----NGLKRLADREQWDDCYRDYL 153
Query: 203 LQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 261
Q KP+I GD NV+HEEID++HP + GFT ER FG
Sbjct: 154 HQLDEQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEERSHFG 198
Query: 262 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 319
+L G D++RFLH E+ +SW + K RIDY++VS L DR+ +
Sbjct: 199 QLLAAG-FTDSFRFLHPEE--AGAYSWWAQRVLTSKQNNSGWRIDYWLVSNRLADRVSSS 255
Query: 320 EMQGHGIELEGFYGSDHCPVSLEL 343
M G DH P+ LE+
Sbjct: 256 SMIDSGER------RDHTPIMLEI 273
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| exodeoxyribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F F D D+ LQE ++ A EL
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFREADADIFCLQETKLQAG--------QIEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y+ +W+ A K Y+GTA+ KK +P V++ +
Sbjct: 46 -----------------DLEGYEQYWNYAVKKGYSGTAVFTKK--KPLNVTYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI EFE FY + Y PN+ + E R KW+ ++ + KP+I+CGD
Sbjct: 87 QEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEEKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTEMLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +++ + WS + + RIDYF VSE LKDR+ ++ L GSD
Sbjct: 189 FYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLADAKI------LTDVMGSD 241
Query: 336 HCPVSLEL 343
HCP+ L+L
Sbjct: 242 HCPIELDL 249
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 77/314 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER +F +L G +D +R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FVDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 ---GSDHCPVVLIL 249
>gi|406882429|gb|EKD30227.1| hypothetical protein ACD_78C00115G0011 [uncultured bacterium (gcode
4)]
Length = 254
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 146/308 (47%), Gaps = 61/308 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N + + F ++ PDVI LQEV+
Sbjct: 1 MKFVSWNVNGVRSVLTKG---FLEYLEKESPDVIGLQEVK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ EE+ L S YQ++W+ A+ K Y+GTA+ K +P V +
Sbjct: 38 --ATEEQFPAGLDLQSL---GYQVYWNAAERKGYSGTAVFSK--IKPLSVRYGYGMAEHD 90
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
T+GR+I EFE ++ + Y PN K E + R+ WD +++ + KP+I GD
Sbjct: 91 TEGRIITLEFEEYFFVTVYTPNA--KRELERLEYRQLWDSLFFDYLKRLEAEKPVIVSGD 148
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H++ID+S+P K + G GFT ER FG L +G ID +R
Sbjct: 149 LNVAHKDIDLSNP---------------KANRGSAGFTDEERDGFGKFLSDG-FIDTFRH 192
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K + + WS + R R+DYF++SE L++R+ + ++ + GSD
Sbjct: 193 FYPNKTEEYTW-WSNFFHARDRNIGWRLDYFLISEWLRERLKSAFIR------QEIRGSD 245
Query: 336 HCPVSLEL 343
HCPV +E+
Sbjct: 246 HCPVGVEI 253
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 142/308 (46%), Gaps = 61/308 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N +K F + + + D+ LQE++M D
Sbjct: 1 MKLISWNVNGYRAVMKKG---FMDAFNSLNADIFCLQEIKMKENQMTDE----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
++ + Y +S + Y+GT + K +P VS+ + T
Sbjct: 47 -------------MNIEGYHRYS--YSANKAGYSGTLVYTK--VEPIGVSYGIGIDEHDT 89
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDL 216
+GRVI E+E F+L+N Y PN+ K E + R W+ ++ + KP+I CGDL
Sbjct: 90 EGRVITCEYEDFFLVNVYTPNSKQKLERLDY--RMVWEDEFHNYLNILRDRKPVIVCGDL 147
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P+ N+ GFT ER + +L +G ID +R+
Sbjct: 148 NVAHNEIDLKNPQ------------SNRR---SAGFTDEERNKMSLLLNDG-YIDTFRYF 191
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K + + WS + R RIDYF+VS++LKD ++ ++ + GSDH
Sbjct: 192 YPDKTDEYSY-WSYFAKARERNAGWRIDYFLVSDDLKDNLVDAKIH------QSIMGSDH 244
Query: 337 CPVSLELS 344
CPV LE++
Sbjct: 245 CPVELEIN 252
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 141/309 (45%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F D D LQE +M AG D
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKALDADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+S P + +Y W+ AD K Y+GTA+ K +P V++ +
Sbjct: 45 -------------ISFPGYTSY---WNYADKKGYSGTAIFTKH--KPLDVTYGIGMDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E + FYL+ Y PN+ ++ R KW+K Q ++ KP++ CGD
Sbjct: 87 HEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEKDFQNYLHWLDEKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FIDTFRS 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + R RIDYF++SE L+DR+ ++ GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------IMGS 239
Query: 335 DHCPVSLEL 343
DHCP+ ++L
Sbjct: 240 DHCPIEVDL 248
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 145/307 (47%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + V F +F D D+ LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGIRACVTKG---FLDFFNEVDADIFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---- 155
+W+ A+ K Y+GTA+ K+ +P V++ ++
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFTKQ--EPISVNYGIQIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
+GRVI EF+ FY + Y PN+ + E R KW+ ++++L+ S K +I CG
Sbjct: 86 DKEGRVITLEFDNFYFVTVYTPNS--QSELKRLDYRMKWEDDFRKYLLKLNSKKGVIVCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ +P K + GFT ER++F +L+ G ID YR
Sbjct: 144 DLNVAHKEIDLKNP---------------KTNRKNAGFTDQEREKFTELLESG-FIDTYR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ +K+ + WS + + RIDYF S++L++ +++ ++ + GS
Sbjct: 188 HFNPDKEGIYSW-WSYRFKAREKNAGWRIDYFCASKDLENNLVSADIHTQIL------GS 240
Query: 335 DHCPVSL 341
DHCP+ L
Sbjct: 241 DHCPIEL 247
>gi|429766260|ref|ZP_19298534.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
gi|429185240|gb|EKY26229.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
Length = 250
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F + D+ +QE +
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFNEVNADIFCIQESK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L + K Y +W+ A+ K Y+GTA+ KK +P V + L
Sbjct: 38 ---------LQEGQINLELKGYHQYWNYAEKKGYSGTAIFTKK--EPLSVRYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE F+++ Y PN+ + E R KW+ ++++ KP+I CGD
Sbjct: 87 KEGRVITLEFEDFFMITVYTPNS--QNELARLDYRMKWEDDFKKYLKHLEKSKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P N+++ GFT ER++ ++L +G ID +R+
Sbjct: 145 LNVAHKEIDLKNP------------TTNRKN---AGFTDEEREKLTSLLNDG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E + WS + RIDYF+VSE LKDR+ + ++ + GSD
Sbjct: 189 FYPETTGVYSW-WSYRFNARKNNAGWRIDYFVVSESLKDRLESAKIHTEVL------GSD 241
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 242 HCPVELTI 249
>gi|340347509|ref|ZP_08670617.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433653537|ref|YP_007297391.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|339609205|gb|EGQ14080.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433304070|gb|AGB29885.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
Length = 266
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 144/321 (44%), Gaps = 75/321 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPE--------FSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
+KF++WN N L VK + F + D D LQE ++ AG D
Sbjct: 1 MKFISWNVNGLRACVKPKTDDAGNVTSKGFEAYFKELDADFFCLQETKL-QAGQIDLQ-- 57
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
F YQ +W+ A+ K Y+GTA+ + +P V++
Sbjct: 58 --------------------------FDGYQSYWNYAEKKGYSGTAVFTRH--EPLGVTY 89
Query: 153 SLEK----TDGRVILAEFETFYLLNTYAPNNG----WKEEENSFQRRRKWDKRIQEFVLQ 204
+ K +GRVI E+ FYL+ Y PN+ + + R W+ +E++++
Sbjct: 90 GIGKEEHDHEGRVITLEYPDFYLITCYTPNSQDTIKGELKPRRLGYRMTWEDDFREYMMR 149
Query: 205 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 263
KP+I CGDLNV+HEE+D+ +P K + GFT ER++ +
Sbjct: 150 LDKNKPVIMCGDLNVAHEEMDLKNP---------------KTNHNNAGFTDEEREKMTTL 194
Query: 264 LKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
L G +D++R L+ E+ +S WS + + RIDYFI S+ L+DRI ++
Sbjct: 195 LGSG-FLDSFRMLYPEQ---VTYSWWSYRMRAREKNTGWRIDYFITSDRLRDRIADAKIH 250
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
GSDHCPV L+L
Sbjct: 251 TE------IMGSDHCPVELDL 265
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 140/306 (45%), Gaps = 62/306 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N ++ F +F T D D+ +QE +M + +P+ +
Sbjct: 1 MKFISWNVNGFRACLQKG---FGDFFTAADADIFCIQETKMQPDQADFSPEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT---D 158
+ + S Y+GTA+ KK +P +V F L T +
Sbjct: 51 ---------------------LKYFHSAVKKGYSGTAVYTKK--EPLEVKFGLNGTHTDE 87
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GRVI EFE +Y + Y PN + E R +++ ++ ++ Q KP+++CGDLN
Sbjct: 88 GRVITCEFEDYYFVCCYVPNA--QNELKRIDYRMEFEDDMRAYLSQLDKTKPVVYCGDLN 145
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+HEEID+ +P K + G GF+ ER +F +L G D +R L+
Sbjct: 146 VAHEEIDLKNP---------------KSNAGNAGFSDEERGKFTELLGAG-FADTFRRLY 189
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+K + WS + RIDYF+VSE L D++ ++ L GSDHC
Sbjct: 190 PDKAGAYSW-WSYRFNARKNNAGWRIDYFVVSERLMDKVKDSKI------LSDITGSDHC 242
Query: 338 PVSLEL 343
PV L++
Sbjct: 243 PVELDI 248
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMITVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L+ G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYF+VS+ L+ ++ E+ GS
Sbjct: 189 FY--PDLEHVYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQT------EGS 240
Query: 335 DHCPVSLEL 343
DHCPV L L
Sbjct: 241 DHCPVVLFL 249
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 140/310 (45%), Gaps = 71/310 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFD---PDVIALQEVRMPAAGSKDAPKNHQELKD 99
KF++WN N L + NF+ FD D LQE ++ A +
Sbjct: 4 KFISWNVNGLRAVMG------KNFMEAFDSLGADFFCLQETKLQAGQIE----------- 46
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL---- 154
+ P +K Y W+ A K Y+GTA+ K +P VS+ +
Sbjct: 47 ---------------MDLPGYKEY---WNYAQKKGYSGTAIFTKH--EPLSVSYGIGIEQ 86
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 213
T+GRVI E+ F+L+ Y PN+ + E R W+ + F++ K P+I C
Sbjct: 87 HDTEGRVITLEYADFFLVTVYTPNS--QNELKRLDYRMAWEDDFRNFLVSLKAKKPVIVC 144
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GD+NV+HEEID+ +P +A + N GFT ER + +L G ID +
Sbjct: 145 GDMNVAHEEIDIKNP---SANRRNA------------GFTDEERAKMTELLASG-FIDTF 188
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R L+ E D WS + R RIDYF+VS+++K RI ++ + G
Sbjct: 189 RTLNPELK-DAYSWWSYRFHARERNAGWRIDYFLVSDDIKPRISDAKIHADIL------G 241
Query: 334 SDHCPVSLEL 343
SDHCPV LEL
Sbjct: 242 SDHCPVELEL 251
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 155/325 (47%), Gaps = 62/325 (19%)
Query: 27 ETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG 86
+ + + + KK LK +WN + + +K + N++ DP ++ LQE++
Sbjct: 46 DAPDNVTSADGKKYTLKISSWNVDGIRAWIKK---QGLNWVREEDPHIMCLQEIKC---- 98
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKC 144
EKL+ P + + +W+ D K Y+G A+L K
Sbjct: 99 -------------------AEKLLPPDVKDMPEYPHK--YWACPDEKEGYSGVAMLCKD- 136
Query: 145 FQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE 200
+P V++ + +GRVI AEF++F+++ Y PN+ R++WD +
Sbjct: 137 -KPLNVTYGIGIEEHDKEGRVITAEFDSFFVIAAYIPNSS--RGLVRLDYRQRWDVDFRA 193
Query: 201 FVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 259
++ S KPLI CGDLNV+H+EID+ +P K + PGFT ER+
Sbjct: 194 YLKGLDSKKPLILCGDLNVAHQEIDLKNP---------------KTNKKTPGFTPQERQG 238
Query: 260 FGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 319
FG +L EG L D++R L+ +K F W+ + + R+DYF++S+ L+ + C
Sbjct: 239 FGELLAEGYL-DSFRELYPDKPSAYTF-WTYMMNARAKNVGWRLDYFVLSKALRPALCDC 296
Query: 320 EMQGHGIELEGFYGSDHCPVSLELS 344
+++ GSDHCP++L ++
Sbjct: 297 KIRSK------VMGSDHCPITLLMA 315
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 144/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCG 214
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I CG
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKVLELK-KPVIVCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P K + GF+ ERK+F +L G ID +R
Sbjct: 144 DLNVAHNEIDLENP---------------KTNRKNAGFSDEERKKFNELLNAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + K+ + WS + + RIDYF+ S LK R+ + + GS
Sbjct: 188 YFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGS 240
Query: 335 DHCPVSLEL 343
DHCPV LEL
Sbjct: 241 DHCPVGLEL 249
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 143/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D D + LQE +M HQE D
Sbjct: 1 MKLVSWNVNGLRACLGKG---FLDFFSAADADAVCLQETKM-----------HQEQAD-- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P YQ +W+ A+ K Y+GTA+ + P V++ +
Sbjct: 45 -------------LELP---GYQQFWNSAEKKGYSGTAVFTR--VPPLNVTYGIGMAEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
++GRVI E+E FYL+N Y PN + E + R KW+ + +++ K P++ CGD
Sbjct: 87 SEGRVITVEYEPFYLVNCYTPNA--QRELARLEYRMKWEDDFRAYLMSLDAKKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER + +L G +D +R
Sbjct: 145 LNVAHQEIDLKNP---------------KTNRRNAGFSDEERAKMTELLAGG-FVDTFRA 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ D+ ++ WS + RIDYFIVSE L+ + ++ + GS
Sbjct: 189 LY--PDVTGAYTWWSYLRRARDTNAGWRIDYFIVSERLRGAVHDSRIRADVM------GS 240
Query: 335 DHCPVSLEL 343
DHCPV L+L
Sbjct: 241 DHCPVELDL 249
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 143/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK+++WN N L +K F + D D LQE ++ + HQ
Sbjct: 4 LKYISWNVNGLRACIKKG---FMDAFNALDADCFCLQETKL---------QPHQ------ 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
L P + Y W S Y+GTA+ K+ +P V++ L
Sbjct: 46 -----------IELELPGYHQY--WNSAVKKGYSGTAIFTKE--EPLSVTYGLGIEEHDQ 90
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GR+I A+F + YLL Y PN+ + R W+K ++E++ + + KP+I CGDL
Sbjct: 91 EGRLITADFGSHYLLCCYTPNS--QRGLARLSYRMTWEKAMKEYMTKLAAEKPVILCGDL 148
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HE+ID+++P N ++ GFT ER R +L G D++R L
Sbjct: 149 NVAHEDIDIANP------------ASNHKN---AGFTDEERGRMTDLLAAG-FTDSFRHL 192
Query: 277 H-KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H EKD +S WS + R RIDYF+VS KD I +G I + GS
Sbjct: 193 HPDEKD---AYSWWSYFAKARERNVGWRIDYFLVSSVWKDHI-----KGASIHSD-ILGS 243
Query: 335 DHCPVSLEL 343
DHCPV L+L
Sbjct: 244 DHCPVELDL 252
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| exodeoxyribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 251
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 141/308 (45%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + +K F + + D+ +QE + +
Sbjct: 1 MKFISWNVNGIRACLKKG---FEEYFQEANADIFCIQETKCQEGQVE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
L+ P + Y W S Y+GTA+ K+ +P VS+ +
Sbjct: 45 -------------LTLPGYHQY--WNSAVRKGYSGTAIFAKR--EPLSVSYGIGIEEHDQ 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI E+E FY + Y PN+ + E R W++ E++ + KP++WCGDL
Sbjct: 88 EGRVITLEYEDFYFVTVYTPNS--QNELARLSYRMDWERDFLEYLTKLEERKPVVWCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER F +L+ G ID +R+
Sbjct: 146 NVAHQEIDLKNP---------------KTNRKNAGFTDEERACFTKVLESG-FIDTFRYF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +++ + WS + + RIDYF+VS L+++++ ++ + GSDH
Sbjct: 190 YPDQEGIYSW-WSYRFRAREKNAGWRIDYFLVSSSLREKMVDAKIHTQVL------GSDH 242
Query: 337 CPVSLELS 344
CPV L+++
Sbjct: 243 CPVELDIT 250
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 65/305 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + + + D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FIDILKESNADIFCVQESKL------------QEGQIDLN 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
+ Y +W+ A+ K Y+GTA+ K+ +P +S +
Sbjct: 48 -----------------LEGYYDYWNYAEKKGYSGTAVFSKE--KPLNISLGIGIEEHDK 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRV+ EFE FYL+N Y PN+ +++ R W+ + ++ + + KP+I CGDL
Sbjct: 89 EGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRSYLNELNKAKPVIVCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GF+ ER++FG +LK G ID YR+
Sbjct: 147 NVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFGELLKSG-FIDTYRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K+ + WS + RIDYF+VS++ +DR++ ++ IE GSDH
Sbjct: 191 YPDKEGAYSW-WSYRFNARANNAGWRIDYFLVSKDFEDRLVDAKIHTQ-IE-----GSDH 243
Query: 337 CPVSL 341
CPV L
Sbjct: 244 CPVEL 248
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 33/234 (14%)
Query: 119 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD----GRVILAEFETFYLLN 173
PF Y+ +W+ A+ K Y+GTA+ K+ +P V + L D GRV+ EFE F+L+N
Sbjct: 32 PFDGYEHYWNYAEKKGYSGTAVFTKQ--RPLSVQYGLNGQDSEAEGRVLTLEFEKFFLVN 89
Query: 174 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFA 232
Y PN+ + + R KW+ + + + KP+I+CGDLNV+HEEID+ +
Sbjct: 90 CYTPNS--QRDLARLSYRLKWEDEMLAHLTELDAQKPVIYCGDLNVAHEEIDICNV---- 143
Query: 233 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 292
K ++G GFT ER + +L G ID +R+LH ++ + WS
Sbjct: 144 -----------KSNYGNSGFTKEERAKMTRLLDSG-FIDTFRYLHPNQEGAYTW-WSYMR 190
Query: 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 346
+ R RIDY ++S L+ + E+ + GSDHCP+S E + A
Sbjct: 191 DVRARNIGWRIDYLLISNRLQSTLQTSEIHAEIL------GSDHCPISAEFAFA 238
>gi|339448653|ref|ZP_08652209.1| exodeoxyribonuclease III Xth [Lactobacillus fructivorans KCTC 3543]
Length = 256
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 138/305 (45%), Gaps = 62/305 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ F++WN N L VK N+ EF N I D D +QE R+
Sbjct: 1 MNFISWNVNGLRSAVKKNFYEFFNEI---DADFFNVQETRV------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--- 158
E + L P YQ W S YAG K + + V + ++ TD
Sbjct: 39 ---HENDIAL-----EVPGNYYQYWDSAERPGYAGVTTFTKH--KAQNVIYGVDGTDTDV 88
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GR + E+ FYL+NTY PN+G EE R WD++ FV + +G KP+I GD+
Sbjct: 89 EGRCLTLEYPDFYLINTYVPNSG--EELQRLDYRLDWDQKFITFVNKLTGTKPVIIGGDM 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
+V+++ ID+ PE ED + G+T ER FG +L G +D +R L
Sbjct: 147 SVAYQPIDIDDPE---------------EDHHKAGYTQQERDDFGRLLASG-FVDTFRAL 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
H + + WS + R + R+DYF+VS+ +++ + + G+ + GSDH
Sbjct: 191 HPHQSGAYTW-WSYRYDERARDRGWRMDYFLVSDSIQNDVAESNILGNVM------GSDH 243
Query: 337 CPVSL 341
P+ L
Sbjct: 244 APIQL 248
>gi|113983|sp|P23196.2|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSG---LSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------G 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S+ + + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSQSVLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 142/309 (45%), Gaps = 63/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K N+ E T D D LQE ++ AG D
Sbjct: 1 MKFISWNVNGLRAVLKKNFLE---VFTDLDADFFCLQETKL-QAGQVD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE----KT 157
L P + YQ W Y+GTA+ KK +P V+ L
Sbjct: 45 -------------LDLPDY--YQYWNYAQKKGYSGTAIFTKK--KPLAVTKGLGLAEFDQ 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDL 216
+GRV+ E+E FYL+N Y PN+ K + F R +W+ + + + KP+I CGDL
Sbjct: 88 EGRVLTLEYEDFYLVNCYTPNSQDKLKRLDF--RLQWEAAFSDHLTNLATKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P+ PN+++ GF+I ER+ A+L G D +R +
Sbjct: 146 NVAHNEIDLKNPK------------PNQKN---AGFSIQERQAMTALLARG-FTDTFRHI 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K + WS + R RIDYFI S L ++ ++ L GSDH
Sbjct: 190 YLDKTGAYSW-WSYRFNARARNAGWRIDYFICSNALLPQVKDSQI------LPEILGSDH 242
Query: 337 CPVSLELSE 345
CPV LE +E
Sbjct: 243 CPVMLETNE 251
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 144/322 (44%), Gaps = 82/322 (25%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L K FS+ T+ DV ALQE ++ QE + D
Sbjct: 1 MRLVSWNVNGLRAAEKKG---FSDIFTSLKADVFALQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+ F +Y+ WS A+ K Y+GTA+ ++ +P +V L
Sbjct: 46 E-----------------FPDYESHWSYAERKGYSGTAVYARQ--KPLQVLHGLGVPHLD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--------- 207
T+GR+ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 87 TEGRICALEFPEFWFVDVYTPNA--QNELARIDHRMEWDDAFRDF---CKGLEKGTTPLG 141
Query: 208 ------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 261
KP+I CGD NV+HEEID+ +P K + G GF+ ER++F
Sbjct: 142 PDTAQPKPVIMCGDFNVAHEEIDLKNP---------------KSNRGNAGFSDEEREKFT 186
Query: 262 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 321
+L G +D +R L+ ++ WS + RIDYF+VS+ L DR+ A +
Sbjct: 187 KLLDAG-FVDTFRLLNP-TEVGAYSWWSYRFNARANNAGWRIDYFLVSKSLADRVRAARI 244
Query: 322 QGHGIELEGFYGSDHCPVSLEL 343
+GSDHCPVSL++
Sbjct: 245 HAD------LFGSDHCPVSLDI 260
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 139/305 (45%), Gaps = 57/305 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + ++ + +PDV+ LQE+ K P+ ++L
Sbjct: 1 MKLVSWNVNGLRAVLGKG---MADAVDALEPDVLCLQEI-------KARPEQVKDLW--- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL--VKKCFQPKKVSFSLEKTDG 159
+SS P +Q+W + Y+G +L V+ + + +G
Sbjct: 48 -------------ISSWP---HQLWNPAEKAGYSGVLILSRVRPLSTSVGIGWPEHDREG 91
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNV 218
RV EFE FYL+N Y PN+ + E R +WD +E+V + KP+++CGDLNV
Sbjct: 92 RVCTMEFEGFYLVNCYTPNS--QNELVRLPYREQWDAAFREYVAGLAETKPVVFCGDLNV 149
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+HEEID++ P KE+ GF+ ER F +L+ G D +R LH
Sbjct: 150 AHEEIDIARP---------------KENRFSAGFSDQERAGFTLLLEAG-FTDTFRALHP 193
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
E+ + WS + R RIDYF VS L R+ + GSDHCP
Sbjct: 194 EEPGWYSW-WSYRAGARARNIGWRIDYFCVSNPLASRVKDAAIH------PDVTGSDHCP 246
Query: 339 VSLEL 343
VSLE+
Sbjct: 247 VSLEI 251
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 141/309 (45%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F D D +QE +M G D
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKDLDADFFCIQETKM-QDGQLDIS---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
F Y+ +W+ A+ K Y+GTA+ K +P VS+ ++
Sbjct: 47 ------------------FPGYESYWNYAEKKGYSGTAIFTKH--KPLSVSYGIDIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI E + F+L+ Y PN+ ++ + R KW+ Q ++ + K P+I CGD
Sbjct: 87 HEGRVITLEMDDFFLVTVYTPNS--QDGLRRLEYRMKWEDDFQAYLHKLDAKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER++ +L G ID +R
Sbjct: 145 MNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLNNG-FIDTFRS 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + R RIDYF++S+ LKDR++ ++ GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISDRLKDRLVDAKIHTE------IMGS 239
Query: 335 DHCPVSLEL 343
DHCPV ++L
Sbjct: 240 DHCPVEVDL 248
>gi|355673738|ref|ZP_09059213.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
gi|354814451|gb|EHE99051.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
Length = 251
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 141/310 (45%), Gaps = 69/310 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDDT 101
K ++WN N L V F +F D DV +QE ++ + D P HQ
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFQAVDADVFCIQESKLQEGQIELDLPGYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+W+ A K Y+GTA+ ++ +P V++ +
Sbjct: 54 ------------------------YWNYARKKGYSGTAVFTRE--EPISVAYGIGMEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI AEF +Y++ Y PN+ ++ R KW+ ++ KP+I+CGD
Sbjct: 88 TEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLSYLKGLEKNKPVIFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 146 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLSAG-FIDTFRY 189
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ DM+ +S WS + + RIDYF VSE LKDR+++ + GS
Sbjct: 190 FY--PDMEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIH------TDIMGS 241
Query: 335 DHCPVSLELS 344
DHCPV L ++
Sbjct: 242 DHCPVELVVN 251
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 143/307 (46%), Gaps = 65/307 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V+ + E ++ D+I +QE ++ AG D
Sbjct: 3 KLISWNVNGLRACVEKGFVESMQHLSA---DIICIQESKL-QAGQID------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--- 158
L P + Y W+ A K Y+GTA+ K +P +V++ + D
Sbjct: 46 ------------LDLPGYCQY---WNYARKKGYSGTAIFSK--IEPLRVTYGMNMPDHDQ 88
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GR+I AEF +YL Y PN+ ++ R+ W++ ++ + KP+I CGDL
Sbjct: 89 EGRLITAEFPDYYLCTVYTPNS--QDGLKRLVYRQSWERDFLTYLQELRRVKPVIICGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P AA + N PGFT ER F +L G +D +R+
Sbjct: 147 NVAHREIDLKNP---AANRKN------------PGFTDEERAEFQTLLDAG-FVDTFRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ EK + + WS + R RIDYF+VS EL DR +Q I E F GSDH
Sbjct: 191 YPEKPEEYSW-WSYRFNARSRNAGWRIDYFLVSNELTDR-----LQSASIHQEIF-GSDH 243
Query: 337 CPVSLEL 343
CPV L L
Sbjct: 244 CPVELIL 250
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 141/309 (45%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + F D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGKD---FEQQFKALDADFFCLQETKM-QAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F YQ +W+ A+ K Y+GTA+ K+ P VS+ +
Sbjct: 46 -----------------QFPGYQSFWNYAEKKGYSGTAIYAKQA--PLAVSYGIGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E+E+F+L+ Y PN+ ++E R +W+ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEYESFFLVTVYTPNS--QDELRRLDYRMQWEDDFQAYLHRLDEQKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER + +L G ID +R
Sbjct: 145 MNVAHEEIDLKNP---------------KTNRRNAGFTDEERAKMTQLLGHG-FIDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++SE L+ ++ ++ GS
Sbjct: 189 LYPEQQT---YSWWSYRFRAREKNTGWRIDYFLISERLRPQLTDAKIH------TDIMGS 239
Query: 335 DHCPVSLEL 343
DHCPV ++L
Sbjct: 240 DHCPVEVDL 248
>gi|268318601|ref|YP_003292257.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
gi|262396976|emb|CAX65990.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
Length = 275
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ L M F NY W A YAGT L K P+
Sbjct: 58 EV-----------LAEM-------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++ D GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PAIGAPDTMDYEGRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+H ID+ HPE + GFT ER+ F +LK
Sbjct: 158 KSKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLLK 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H +++ +SW + K RIDY+IVS+ + D++ EM
Sbjct: 203 LG-FTDTFRKVH--GNIEGVYSWWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEMID 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DHCP+ LE++
Sbjct: 260 TGDR------KDHCPIMLEIN 274
>gi|392395397|ref|YP_006431999.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526475|gb|AFM02206.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 139/310 (44%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFEQEQADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK-- 156
+EE++ PF+ Y +W+ A K Y+GTA+ K +P VS+ + K
Sbjct: 39 ---QEEQI---------PFQLEGYYAYWNFAQKKGYSGTAVFTKN--EPLSVSYGIGKEE 84
Query: 157 --TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
+GRVI EFETFYL+ YAPN+ + R W++ ++ KP+I+C
Sbjct: 85 HDQEGRVITLEFETFYLVTVYAPNS--QRGLARLDYRMTWEEEFLSYLKSLEKSKPVIFC 142
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H EID+ +P K + GF+ ER +F +LK G ID +
Sbjct: 143 GDLNVAHTEIDLKNP---------------KSNRKNAGFSDEERAKFSGLLKNG-FIDTF 186
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R + +K D WS + RIDYF VSE LK+ + + + G
Sbjct: 187 RHFYPDK-TDSYTWWSYMFNARTNNAGWRIDYFCVSESLKNEL------KDALIYDKIMG 239
Query: 334 SDHCPVSLEL 343
SDHCPV LE+
Sbjct: 240 SDHCPVGLEI 249
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 138/307 (44%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F +F+ PD + +QE ++ QE + D
Sbjct: 1 MKFISWNVNGLRACVKKG---FLDFVEAEQPDFLCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+ YQ W Y+GTA+ K +P +V++ L
Sbjct: 46 QLD----------------GYYQYWNYAVKKGYSGTAIFTKH--EPLQVTYGLNIAEHDQ 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI E+ FYL+ Y PN+ + E R W++ + +++ KP+I CGDL
Sbjct: 88 EGRVITLEYNDFYLVTVYTPNS--QNELARLDYRLTWEEAFRNYLIGLDVLKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H++ID+ +P K + GFTI ER +L G ID +R+
Sbjct: 146 NVAHQQIDLKNP---------------KTNTKNAGFTIEERNEMTKLLNSG-FIDTFRYF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ K+ +C WS + + RIDYFI S+ L+ R+ + + GSDH
Sbjct: 190 YPTKE-NCYSWWSYRAGARAKNVGWRIDYFITSKALESRLEDARIYPDVL------GSDH 242
Query: 337 CPVSLEL 343
CPV L+L
Sbjct: 243 CPVGLQL 249
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 143/310 (46%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L + + EF N + + DV +QE +M
Sbjct: 1 MRLISWNVNGLRACMNKGFMEFFN---SVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
R + F NY+ +W+ A+ K Y+G A+ K +P V + +
Sbjct: 39 ----------QREQAEFDFPNYEEYWNSAEKKGYSGVAIFSK--IKPLSVEYDMGIAHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR+I AEF FYL+N Y PN+ K E + R +W+ + F+ S KP+I CGD
Sbjct: 87 KEGRIITAEFSDFYLVNVYTPNS--KRELERLEYRMEWEDDFRTFLKNLESKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER++ A+L G D YR
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSALLDSG-FTDTYRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ EK ++W + +GK R RIDYF+ S+ L R+ + + + G
Sbjct: 189 FYPEK--QGAYTW-WSYMGKARANNTGWRIDYFLCSKILDSRLKSASIYPEIL------G 239
Query: 334 SDHCPVSLEL 343
SDHCPV +E+
Sbjct: 240 SDHCPVGIEI 249
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 146/309 (47%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V N F +F D D+ +QE +M
Sbjct: 12 MKMISWNVNGIRACVGKN---FMDFFKEADADIFCIQESKM------------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L P + Y W+ A+ K Y+GTA+ KK +P V++ +
Sbjct: 50 ---QEGQL----QLELPGYYQY---WNYAEKKGYSGTAIFAKK--EPLSVAYGIGIEEHD 97
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E++ FY++ Y PN+ + E R KW+ +E++ Q KP++ CGD
Sbjct: 98 HEGRVITLEYDNFYMVTVYTPNS--QNELARLDYRMKWEDDFREYLKQLEQTKPVVVCGD 155
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H EID+ +P K + GFT ER++F +L G +D +RF
Sbjct: 156 MNVAHTEIDLKNP---------------KTNRKNAGFTDEEREKFSTLLDSG-FVDTFRF 199
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D + +S WS + + RIDYF+ S+ L+ R++ ++ + GS
Sbjct: 200 FN--PDAEGIYSWWSYRFKAREKNAGWRIDYFLTSKVLESRLVDAKIHTEVL------GS 251
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 252 DHCPVELDI 260
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 140/310 (45%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F +F D+ LQE ++ A
Sbjct: 1 MKLISWNVNGIRACLNKG---FMDFFEKEQADIFCLQETKIQA----------------- 40
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK-- 156
PF+ Y +W+ A K Y+GTA+ K+ +P KV++ + K
Sbjct: 41 --------------DQIPFQLEGYHQYWNYAQKKGYSGTAVFTKQ--EPLKVTYGIGKEE 84
Query: 157 --TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 213
+GRVI EFE FYL+ Y PN+ + + R W++ F+ KP+I+C
Sbjct: 85 HDQEGRVITLEFEGFYLVTVYTPNS--QRGLARLEYRMTWEEEFLSFLKNLEQAKPVIFC 142
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLN++H EID+ +P K + GF+ ER +FG +LK+G ID +
Sbjct: 143 GDLNMAHTEIDLKNP---------------KTNRKNAGFSDEERAKFGELLKKG-FIDTF 186
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R+ + +K + WS + RIDYF VSE LKD++ + + G
Sbjct: 187 RYFYPDK-TEAYTWWSYMFNARANNAGWRIDYFCVSESLKDQLRDAVIYSEIL------G 239
Query: 334 SDHCPVSLEL 343
SDHCPV LE+
Sbjct: 240 SDHCPVGLEI 249
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 145/311 (46%), Gaps = 73/311 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N L V F +F D DV +QE ++ QE + D
Sbjct: 3 KFISWNVNGLRACVGKG---FLDFFKEIDADVFCIQESKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
L P + Y W+ A K Y+GTA+ ++ +P VS+ + T
Sbjct: 46 ------------LDLPGYHQY---WNYALKKGYSGTAMFTRE--EPLSVSYGIGMEEHDT 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPLIWC 213
+GRVI AEF +Y++ Y PN+ ++ R KW+ +F+ G KP+++C
Sbjct: 89 EGRVITAEFPDYYVVTCYTPNS--QDGLARLDYRMKWE---DDFLAYLKGLEKKKPVVFC 143
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLSAG-FIDTF 187
Query: 274 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
R+ + D + +S WS + + RIDYF VSE LKDR+++ + +
Sbjct: 188 RYFY--PDAEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSAAIHTEVM------ 239
Query: 333 GSDHCPVSLEL 343
GSDHCPV L +
Sbjct: 240 GSDHCPVELVM 250
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 140/309 (45%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F N + D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRAVVGK---DFENIFKSLDADFFCLQETKM-QAGQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y+ +W+ AD K Y+GTA+ + +P V++ +
Sbjct: 47 ------------------FDGYESFWNYADKKGYSGTAIYTRH--KPLNVTYGIGIDQHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E TF+L+ Y PN+ ++E R +W+ Q ++ KP+I CGD
Sbjct: 87 HEGRVITLEMPTFFLVTVYTPNS--QDELRRLDYRMQWEDDFQAYLHDLDKRKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G D +R+
Sbjct: 145 MNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLGAG-FTDTFRW 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E + +S WS + R RIDYF+VS+ L+ ++ ++ GS
Sbjct: 189 KYPE---EITYSWWSYRFKARERNTGWRIDYFLVSDRLQSEVLDAKIH------TDILGS 239
Query: 335 DHCPVSLEL 343
DHCPV LEL
Sbjct: 240 DHCPVELEL 248
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 139/307 (45%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L R + F + D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGL--RAVDG-KGFRDIFRAIDADFFCLQETKM------------QEGQLDI 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
F Y+ +W+ A+ K Y+GTA+ K ++ +++ D
Sbjct: 46 -----------------AFDGYESYWNYAEKKGYSGTAIFTKHKPLSVQIGLGIDEHDHE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E + FYL+ Y PN+ ++E R W++ Q + + KP+I CGD+N
Sbjct: 89 GRVITLELDDFYLVCVYTPNS--QDELRRLDYRMIWEEAFQAHLHKLDAHKPVIVCGDMN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+ +P K + GFT ER++ +L G ID +R+ H
Sbjct: 147 VAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLSNG-FIDTFRYFH 190
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
D+ +S WS + + RIDYF+VSE LK R++ + GSDH
Sbjct: 191 --PDLTGAYSWWSYRFRAREKNTGWRIDYFLVSERLKPRLVEANIHN------DIMGSDH 242
Query: 337 CPVSLEL 343
CPV L L
Sbjct: 243 CPVELIL 249
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 141/309 (45%), Gaps = 63/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE-FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K ++WN N + W + F + + D+ LQE++M D
Sbjct: 1 MKLISWNVNGY----RAVWKKGFKEAFDSLNADIFCLQEIKMKENQMTDE---------- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EK 156
+ + Y +S + Y+GT + K +P VSF +
Sbjct: 47 --------------MEIEGYHRYS--YSANKAGYSGTLVYTKT--EPIGVSFGIGIDEHD 88
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGD 215
T+GRVI E+E F+L+N Y PN+ K E + R W+ ++ + KP+I CGD
Sbjct: 89 TEGRVITCEYEDFFLVNVYTPNSKQKLERLDY--RMVWEDEFHNYLNILRDRKPVIVCGD 146
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P+ N+ GFT ER + +L +G ID +R+
Sbjct: 147 LNVAHNEIDLKNPQ------------SNRR---SAGFTDEERNKMSLLLNDG-YIDTFRY 190
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K + + WS + R RIDYFIVS++LKD ++ ++ + GSD
Sbjct: 191 FYPDKTDEYSY-WSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIH------QSIMGSD 243
Query: 336 HCPVSLELS 344
HCPV LE++
Sbjct: 244 HCPVELEIN 252
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 140/305 (45%), Gaps = 61/305 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N + F +F + D D+ +QE +M
Sbjct: 8 KLISWNVNGIRACAGKG---FMDFFNSIDADIFCIQESKM-------------------- 44
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKK--CFQPKKVSFSLEKTDG 159
+E +L L P + Y W+ AD K Y+GTA+ K+ + K + +G
Sbjct: 45 --QEGQL----TLDMPGYYQY---WNYADKKGYSGTAIFTKEKSLSETKGIGIDEHDHEG 95
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 218
RVI E+E FY++ Y PN+ + E R KW+ + ++ + KP+I CGD+NV
Sbjct: 96 RVITLEYENFYMVTVYTPNS--QNELARLDYRMKWEDDFRAYLKKLEENKPVIVCGDMNV 153
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H EID+ +P K + GFT ER++ +L +G ID +R+ +
Sbjct: 154 AHNEIDLKNP---------------KTNRKNAGFTDEEREKMTVLLDDG-FIDTFRYFYP 197
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
+++ + WS + + RIDYF+ SE LKD++I ++ GSDHCP
Sbjct: 198 DQENIYSW-WSYRFKAREKNAGWRIDYFLTSESLKDKLIDAKIH------TDIMGSDHCP 250
Query: 339 VSLEL 343
V L++
Sbjct: 251 VELDI 255
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 150/313 (47%), Gaps = 69/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + EF + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKGFLEF---FKEVNADIFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS----LEK 156
+E ++ L + Y +W+ A+ K Y+GTA+ KK K +SF+ +E+
Sbjct: 39 ---QEGQIEL-------ELEGYHQYWNYAERKGYSGTAIFTKK----KPLSFTYGIGIEE 84
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
D GRVI EF+ FY++ Y PN+ K++ + R KW+ ++++ KP+I C
Sbjct: 85 HDKEGRVITLEFDDFYMVTVYTPNS--KDQLARLEYRMKWENDFRDYLKSLEKNKPVIMC 142
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H+EID+ +P K + GFT ER++F L G ID Y
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFTEFLSAG-FIDTY 186
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R+ + +K+ + WS + RIDYF VS+ LK+R+++ ++ + G
Sbjct: 187 RYFNPDKEGAYSW-WSYRFNARKNNAGWRIDYFCVSDCLKERLVSADIHTEVM------G 239
Query: 334 SDHCPVSLELSEA 346
SDHCPV L +S+
Sbjct: 240 SDHCPVELVISDV 252
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 157/330 (47%), Gaps = 68/330 (20%)
Query: 20 SPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQE 79
+P + G + +E+ S K K ++WN N L + F ++ D D+ +QE
Sbjct: 16 NPEQSGGRKSAIETEKLSMK---KMISWNVNGLRACLGKG---FLEYLKESDADIFCIQE 69
Query: 80 VRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTA 138
++ QE + D L P + Y W+ A+ K Y+GTA
Sbjct: 70 SKL------------QEGQVD--------------LELPGYHQY---WNYAEKKGYSGTA 100
Query: 139 LLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 194
+ K+ +P V++ L +GRVI AEF +Y++ Y PN+ ++ R +W
Sbjct: 101 MFTKE--EPIAVTYGLGIEEHDHEGRVITAEFPEYYVVTCYTPNS--QDGLKRLDYRMQW 156
Query: 195 DKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 253
+ + ++ + + KP+I+CGDLNV+H+EID+ +P K + GF+
Sbjct: 157 EDAFRAYLKELETKKPVIFCGDLNVAHQEIDLKNP---------------KTNRKNAGFS 201
Query: 254 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 313
ER +F +L+ G +D +R+ + +++ + WS + + RIDYF VSE LK
Sbjct: 202 DEERAKFTELLEAG-FVDTFRYFYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSESLK 259
Query: 314 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
DR++ ++ + GSDHCPV L++
Sbjct: 260 DRLVDAKIHTEVM------GSDHCPVELDI 283
>gi|260663817|ref|ZP_05864702.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260551578|gb|EEX24765.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 279
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 144/326 (44%), Gaps = 65/326 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +S+ + I PDVIA+QE ++ +G K HQ
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y + W A YAGT L K+ PK
Sbjct: 58 ------------------GVLAELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPKVTY 99
Query: 152 FSL---EKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++ E D GR+I EF+ FYL Y PN+G + R++WD R +E++ +
Sbjct: 100 PTIGAPEPMDEEGRIITLEFKNFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+HEEID++HP + GFT ER++F A+L
Sbjct: 158 RQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALLA 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D++R LH D +SW K RIDY++VS+ L D++++ M
Sbjct: 203 AG-FTDSFRSLH--PDETGAYSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMID 259
Query: 324 HGIELEGFYGSDHCPVSLELSEASSD 349
G DH P+ L+++ ++D
Sbjct: 260 SGER------RDHAPIQLDINIPAAD 279
>gi|227499267|ref|ZP_03929379.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227218676|gb|EEI83907.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 273
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 148/320 (46%), Gaps = 65/320 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL + ++ + + I D D+IALQE ++PA G K H+
Sbjct: 1 MKFISWNIDSLNAALTSDSARAKLSRDVLDTIKNEDADIIALQETKLPATGPS---KKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWW-SLADS---KYAGTALLVKKCFQPKKVS 151
E KL F +Y +W S DS YAGT L KK + K+
Sbjct: 58 E-----------KLFEF-------FPDYDYFWVSSRDSARKSYAGTMTLYKKGLKVKESF 99
Query: 152 FSLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
+ D GR++ E + +Y + Y PN G E N R WD + +++ +
Sbjct: 100 PEIGAPDTMDLEGRILTLELDDYYFVQVYTPNAG--GELNRLPLREIWDLKFADYLEELD 157
Query: 207 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+HEEID++HPE N ++ GFT ER+ F +L
Sbjct: 158 KIKPVIATGDFNVAHEEIDLAHPE-------NNHM--------SAGFTDEERRGFTNLLN 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D++R+L+ KD++ ++W + K RIDYF+VS+ L D++ M
Sbjct: 203 RG-FTDSFRYLN--KDLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDRLIDKVKDSTMID 259
Query: 324 HGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 260 SGQR------QDHTPIMLEI 273
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ F++WN N + V+ F +F D +QE ++
Sbjct: 1 MHFISWNVNGIRACVRKG---FLDFFQEMGADFFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+E ++ L Y +W+ A+ K Y+GTA+ K ++P V + ++ +
Sbjct: 39 ---QEGQIQL-------DLDGYYQYWNYAERKGYSGTAIFTK--WEPLHVFYGIDSNNYE 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
GR+I E+E+FYL+N Y PN+ K + + R +W+ R+ +++ + + K PL++CGD
Sbjct: 87 PEGRIITLEYESFYLVNVYTPNS--KRDLTRLEDRLEWEDRLFDYLQKLNKKKPLVYCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ + +K + G GFT ER + +L G +D R
Sbjct: 145 LNVAHHEIDLRN---------------DKTNHGNSGFTKEERSKMSRLLDAG-FVDTLRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H E D D WS + R RIDYFIVSE+L + E+ + GSD
Sbjct: 189 FHPEAD-DIFTWWSYMKTIRERNIGWRIDYFIVSEQLIPALKKSEVHSSVL------GSD 241
Query: 336 HCPVSLELSE 345
HCP+ L + E
Sbjct: 242 HCPIGLVIDE 251
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 144/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFHQADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P V++ +
Sbjct: 39 ---QEGQLQL-------ELEGYHQYWNYAEKKGYSGTAVFTKE--EPLSVTYGMGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EF FY Y PN+ + E R +W+ ++ + KP+I+CGD
Sbjct: 87 KEGRLITLEFPEFYFATVYTPNS--QNELARLDYRMQWETDFLAYMKKLEEKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER +FG +L G ID +R+
Sbjct: 145 LNVAHREIDLKNP---------------KTNRKNAGFTDEERGKFGELLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ DM+ +S WS + + RIDYF VSE L++R+ ++ L +GS
Sbjct: 189 FY--PDMEGIYSWWSYRFRAREKNAGWRIDYFCVSESLRERLADAKI------LTYIFGS 240
Query: 335 DHCPVSLEL 343
DHCPV L+L
Sbjct: 241 DHCPVELDL 249
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 144/309 (46%), Gaps = 63/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K N ++ I D D++ALQE + D+ K +E+K
Sbjct: 94 LKISSWNVSGIRAVIKKNGIKY---IAKEDADIVALQETKC------DSNKLPEEIK--- 141
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y ++ + S Y G AL K+ +P V + L ++
Sbjct: 142 ------------------LNGYHYYFLESKKSGYCGVALFTKE--KPIDVKYGLNNSEFD 181
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GR+I AE+ FYL+N Y PN G K + +R KW++ + +V KP+I CGD
Sbjct: 182 NEGRLITAEYLNFYLINVYVPNAGQKLV--TLPKRLKWNEIFKTYVRNLDEKKPVIICGD 239
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFTI ER L G +D +R
Sbjct: 240 MNVAHKEIDLRNP---------------KTNIKNAGFTIEERDGMTDFLATG-FVDTFRA 283
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ +K D WS + + R+DYF+VSE +KD + C+ + + YGSD
Sbjct: 284 LYPDK-TDAYTFWSYFANARSKNIGWRLDYFLVSERIKDNV--CD----NVIRDKVYGSD 336
Query: 336 HCPVSLELS 344
HCP+ L ++
Sbjct: 337 HCPIVLYIN 345
>gi|336433570|ref|ZP_08613387.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016006|gb|EGN45803.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
Length = 250
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F F D D+ LQE ++ A EL
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFREADADIFCLQETKLQAG--------QIEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y+ +W+ A K Y+GTA+ KK +P +++ +
Sbjct: 46 -----------------DLEGYEQYWNYAVKKGYSGTAVFTKK--KPLNMTYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY + Y PN+ + E R KW+ ++ + KP+I+CGD
Sbjct: 87 QEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTEMLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +++ + WS + + RIDYF VSE LKDR+ ++ L GSD
Sbjct: 189 FYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLADAKI------LTDVMGSD 241
Query: 336 HCPVSLEL 343
HCP+ L+L
Sbjct: 242 HCPIELDL 249
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K F +F D D+ +QE +M E++ D
Sbjct: 1 MKLVSWNVNGIRACMKKG---FMDFFQAIDADIFCIQETKMQPG--------QLEIETD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y + + AD K Y+G + KK +P VS+ L
Sbjct: 49 --------------------GYVQYMNSADKKGYSGVMVFSKK--EPLSVSYGLGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E++TFYL+ Y PN+ K+ R +W+ + ++ + K ++ CGD
Sbjct: 87 HEGRVITCEYDTFYLVCVYTPNS--KDGLLRLDYRMQWEDAFRAYLQRLKESKSVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER++ +L G +D+YR+
Sbjct: 145 LNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTTLLSSG-FVDSYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ +K+ + WS + + RIDYF+VSE+ K+RI E Q H YGSD
Sbjct: 189 LYPDKENVYSW-WSYRFSAREKNAGWRIDYFLVSEDAKERIE--EAQIH----TDIYGSD 241
Query: 336 HCPVSLELSE 345
HCPVSL +
Sbjct: 242 HCPVSLSFKD 251
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 146/314 (46%), Gaps = 77/314 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAVKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVACGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 ---GSDHCPVVLFL 249
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 142/305 (46%), Gaps = 59/305 (19%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN N L + F +F D D+ +QE ++ +
Sbjct: 3 KLVSWNVNGLRACIGKG---FWDFFKEVDSDIFCIQETKLQEG----------------Q 43
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--G 159
E++L + Y+ +W+ A K Y+GTA+ K +E+ D G
Sbjct: 44 VELEQEL-----------EGYEQYWNYAVKKGYSGTAIFTKIKPVSSSCGIGIEEHDNEG 92
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNV 218
RVI EF+ ++L+N Y PN+ K E + R KW+ + ++ Q KP+I CGD+NV
Sbjct: 93 RVITLEFDQYFLVNVYTPNS--KRELERLEYRMKWEDDFRIYLKQLEETKPVIICGDMNV 150
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+ +P NK GFT+ ER++F +L++G +D+YR L+
Sbjct: 151 AHKEIDIKNPR------------SNKR---SAGFTMEEREKFSELLEQG-FVDSYRTLYP 194
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
+K + WS + R RIDYF VSE LK+ I ++ GSDHCP
Sbjct: 195 DKTGAYTW-WSYMFKARERNVGWRIDYFCVSEVLKNIIEEADIYSE------IMGSDHCP 247
Query: 339 VSLEL 343
V L +
Sbjct: 248 VGLTI 252
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 77/314 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHSQ-IE-- 238
Query: 330 GFYGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 ---GSDHCPVVLFL 249
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 146/308 (47%), Gaps = 67/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K + E+ I D D++ALQE + D
Sbjct: 84 LKISSWNVSGIRALIKKSGMEY---IMKEDADIVALQETKC----------------DKN 124
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLEKTD 158
K E KL K Y ++ DSK Y G AL K+ +P + + L+ ++
Sbjct: 125 KLPEEVKL-----------KGYHHYF--LDSKKAGYCGVALYTKQ--KPIDIQYGLKNSE 169
Query: 159 ----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
GR+I AE+ FY LN Y PN G K + +R +W++ + +V Q KP+I C
Sbjct: 170 FDDEGRLITAEYPNFYFLNVYVPNAGQKLV--TLPKRLQWNEAFKSYVKQLDEKKPVIIC 227
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GD+NV+H+EID+++P K + GFT ER+ L G +D +
Sbjct: 228 GDMNVAHQEIDLTNP---------------KTNTKNAGFTKEEREGMTDFLAAG-FVDTF 271
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R L+ +K F WS + + R+DYF+VSE++K+++ C+ + + YG
Sbjct: 272 RSLYPDKTGAYTF-WSYFANARSKNIGWRLDYFLVSEKIKNKV--CD----NVIRDKIYG 324
Query: 334 SDHCPVSL 341
SDHCP+ L
Sbjct: 325 SDHCPIVL 332
>gi|347525140|ref|YP_004831888.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284099|gb|AEN77952.1| Exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 254
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 139/310 (44%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+ FV+WN N L +K N FS D D +QE ++ + D P HQ
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD- 158
+W+ A+ K Y+GTA+ K +P+ VS+ ++ ++
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKH--EPQSVSYGIQNSEF 85
Query: 159 ---GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGD 215
GRVI E+ +FYL+ Y+PN+ K + F R D + KP+I CGD
Sbjct: 86 DHEGRVITLEYASFYLVCCYSPNSQPKLKRLDF-RMGFEDAFLNYLNALKEKKPVIMCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GF+ ER +L+ G L D +RF
Sbjct: 145 LNVAHEEIDLKNP---------------KTNHKNAGFSNEERSCMTRLLENGYL-DTFRF 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H ++ + WS + RIDYFIVSE LKD + E+ L GSD
Sbjct: 189 FHPDETGIYSW-WSYRFNARKNNAGWRIDYFIVSESLKDSLENAEI------LTDIMGSD 241
Query: 336 HCPVSLELSE 345
HCPV LE ++
Sbjct: 242 HCPVLLETAD 251
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 146/309 (47%), Gaps = 69/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L VK F F D D+ +QE ++ A ++ D
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLAFFAETDADIFCVQETKLQAG----------QIALD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A+ K Y+GTA+ KK +P V + + +
Sbjct: 47 ------------------LDGYYQYWNYAERKGYSGTAVFTKK--EPLSVRYGVGEDRTE 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GR++ E+E FYL+N Y PN+ + + R +W+ R++ ++ + K P+I CGD
Sbjct: 87 PEGRILTLEYEDFYLVNVYTPNS--QRDLARLGYRLEWEDRMRAYLTELDKKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ + K + G GFT ER + +L G ID++R+
Sbjct: 145 MNVAHQEIDLKNA---------------KNNVGNSGFTAEERGKMTGLLNSG-FIDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ E+ + ++W + + K R + + RIDYF+VS+ L R+ M G
Sbjct: 189 FYPER--EGAYTWW-SYMNKVRERNIGWRIDYFLVSKRLAGRLKDAGMYPE------IMG 239
Query: 334 SDHCPVSLE 342
SDHCPV LE
Sbjct: 240 SDHCPVFLE 248
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 143/307 (46%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINMEHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGD 215
+GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ CGD
Sbjct: 87 KEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYF+VS L+DRI + + GS
Sbjct: 189 FN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GS 240
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 241 DHCPVKL 247
>gi|42518122|ref|NP_964052.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|385824990|ref|YP_005861332.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
gi|41582406|gb|AAS08018.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|329666434|gb|AEB92382.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
Length = 275
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ L M F NY W A YAGT L K P+
Sbjct: 58 EV-----------LAEM-------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++ D GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PTIGAPDTMDYEGRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+H ID+ HPE + GFT ER+ F +LK
Sbjct: 158 KSKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQGFDKLLK 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H +++ +SW + K RIDY+IVS+ + D++ EM
Sbjct: 203 LG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEMID 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DHCP+ LE++
Sbjct: 260 TGDR------KDHCPIMLEIN 274
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 147/315 (46%), Gaps = 77/315 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVACGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLELS 344
GSDHCPV L L+
Sbjct: 239 ---GSDHCPVVLFLN 250
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 77/314 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKSLVDAEIHSQ-IE-- 238
Query: 330 GFYGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 ---GSDHCPVVLFL 249
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 137/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +P+ I D D + LQE +M AG DA
Sbjct: 1 MKFISWNVNGLRAVFTKGFPD---IIKELDADFVCLQETKM-QAGQLDA----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+Y +W+ A K Y+GTA+ + +P VS+ +
Sbjct: 46 -----------------DLPSYISYWNYAVKKGYSGTAIYTRH--EPLSVSYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E+ F+L+ Y PN+ +++ R W+ + ++ KP+I CGD
Sbjct: 87 QEGRVITLEYPEFFLVTVYTPNS--QDDLRRLDYRMTWEDAFRSYLKGLDAKKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KSNRRNAGFTDEERGKLQELLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ D WS + R RIDYF+ SE L R +QG I E YGSD
Sbjct: 189 FYPDQ-ADIYSWWSYRFKARERNSGWRIDYFVASERLAPR-----LQGAAIHTE-IYGSD 241
Query: 336 HCPVSLEL 343
HCPV L L
Sbjct: 242 HCPVELIL 249
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 147/315 (46%), Gaps = 77/315 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNTGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLELS 344
GSDHCPV L L+
Sbjct: 239 ---GSDHCPVVLFLN 250
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 148/309 (47%), Gaps = 63/309 (20%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
+D K ++WN N L KN F + + D D++ALQE+ K H +
Sbjct: 227 RDERKLISWNVNGLRAVAKNG---FLDVLHELDADILALQEI-----------KAHPDQL 272
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
DD +R +S YQ +W A K YAGTA+ K P +V + +E+
Sbjct: 273 DDQ----------LRNVSG-----YQSFWHSAKKKGYAGTAVFSK--IPPLRVLYGMEQP 315
Query: 158 ----DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 212
+GRV+ E+ FYL+NTY+PN + E ++++++ + ++ + S K ++
Sbjct: 316 QFDDEGRVLTLEYPDFYLINTYSPNA--QPELKRLAFKQEFNRTLLAYMDRLRSEKTVVL 373
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGDLNV+H+EID+++P K + PGF+ ER ++ G +D
Sbjct: 374 CGDLNVAHKEIDLANP---------------KANVKNPGFSEQERAWMDELIAAG-YVDT 417
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+R ++E +S+ N K G RIDYFIV +DR++ + G
Sbjct: 418 FRQFNQEAGQYTWWSYRFNARAKNIG--WRIDYFIVDGSSRDRVLEAAIHGE------IT 469
Query: 333 GSDHCPVSL 341
GSDHCPVSL
Sbjct: 470 GSDHCPVSL 478
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F +FD D +QE +M
Sbjct: 1 MKLISWNVNGLRACVTKG---FKETFKSFDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+E +L L F Y+ +W+ AD K Y+GTA+ K +P V++ ++ D
Sbjct: 39 ---QEGQLDL-------QFDGYESFWNYADKKGYSGTAIYAKT--KPLNVTYGIDIDDHN 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
GRVI E++ F+L+ Y PN+ + E R W+K Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEYDNFFLVTVYTPNS--QNELKRLNYRMIWEKDFQTYLHKLDKRKPIIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G D +RF
Sbjct: 145 MNVAHQEIDIKNP---------------KTNHKSAGFTDEEREKMTQLLSNG-FTDTFRF 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E+ +S WS + + RIDYF+VS+ +K++++ ++ GS
Sbjct: 189 KYPEQ---ITYSWWSYRFRAREKNAGWRIDYFLVSDRIKEKVLDAKIH------TDIMGS 239
Query: 335 DHCPVSLEL 343
DHCPV L +
Sbjct: 240 DHCPVELTI 248
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 147/315 (46%), Gaps = 77/315 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLELS 344
GSDHCPV L L+
Sbjct: 239 ---GSDHCPVVLFLN 250
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 142/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + V+ F +F T D D+ +QE +M + D P HQ
Sbjct: 1 MKFVSWNVNGIRACVQKG---FLDFFTEADADIFCIQESKMQEGQLELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+W+ A K Y+GTA+ KK +P V++ +
Sbjct: 53 -------------------------YWNYAVKKGYSGTAVFTKK--EPLSVTYGIGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GRVI EFE FY + Y PN+ + E R +W+ + ++ + KP+I G
Sbjct: 86 DQEGRVITCEFEDFYFVTVYTPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIVTG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+H+EID+ +P K + GFT ER +F +L G ID +R
Sbjct: 144 DMNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +++ + WS + + RIDYF VSE LK+R+ ++ L GS
Sbjct: 188 YFYPDREGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKERLKDAKI------LTDVMGS 240
Query: 335 DHCPVSLEL 343
DHCP+ L++
Sbjct: 241 DHCPIELDM 249
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 147/315 (46%), Gaps = 77/315 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLELS 344
GSDHCPV L L+
Sbjct: 239 ---GSDHCPVVLFLN 250
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 146/306 (47%), Gaps = 61/306 (19%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F +F D D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FLDFFKESDADIFCIQETKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--G 159
L F +Y W+ A+ K Y+GTA+ K+ K+ +E+ D G
Sbjct: 46 ------------LDLDGFNSY---WNYAEKKGYSGTAVFTKEEPLSVKIGIGIEEHDNEG 90
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNV 218
RV+ EF FYL+N Y PN+ K+ R W+ ++++ + K P+I CGDLNV
Sbjct: 91 RVLTLEFNDFYLVNVYTPNS--KQGLERLDYRMVWEDVFRQYLKELEKKKPVILCGDLNV 148
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+ +P K + GFT ER++ +L G ID YRF +
Sbjct: 149 AHKEIDLKNP---------------KVNRKNAGFTDEEREKITQLLDSG-FIDTYRFFYP 192
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
+K+ + WS + RIDYF+VSE LKD++ ++ +++E GSDHCP
Sbjct: 193 DKEGAYSW-WSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIH---MDIE---GSDHCP 245
Query: 339 VSLELS 344
V L ++
Sbjct: 246 VELLIN 251
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 142/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + V+ F +F T D D+ +QE +M + D P HQ
Sbjct: 3 MKFVSWNVNGIRACVQKG---FLDFFTEADADIFCIQESKMQEGQLELDLPGYHQ----- 54
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+W+ A K Y+GTA+ KK +P V++ +
Sbjct: 55 -------------------------YWNYAVKKGYSGTAVFTKK--EPLSVTYGIGIEEH 87
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GRVI EFE FY + Y PN+ + E R +W+ + ++ + KP+I G
Sbjct: 88 DQEGRVITCEFEDFYFVTVYTPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIVTG 145
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+H+EID+ +P K + GFT ER +F +L G ID +R
Sbjct: 146 DMNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FIDTFR 189
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +++ + WS + + RIDYF VSE LK+R+ ++ L GS
Sbjct: 190 YFYPDREGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKERLKDAKI------LTDVMGS 242
Query: 335 DHCPVSLEL 343
DHCP+ L++
Sbjct: 243 DHCPIELDM 251
>gi|160936797|ref|ZP_02084163.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
gi|158440289|gb|EDP18035.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
Length = 251
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 142/309 (45%), Gaps = 69/309 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDDT 101
K ++WN N L V F +F + DV +QE ++ + D P HQ
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFREAEADVFCIQESKLQEGQIELDLPGYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+W+ A K Y+GTA+ K+ +P VS+ +
Sbjct: 54 ------------------------YWNYARKKGYSGTAMFTKE--EPVSVSYGIGMEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI AEF +Y++ Y PN+ ++ R KW+ ++ + KP+++CGD
Sbjct: 88 TEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLAYLKKLEENKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G +D +R+
Sbjct: 146 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLAAG-FVDTFRY 189
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + + RIDYF VSE LKDR+++ + + GS
Sbjct: 190 FY--PDLEGTYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHNTVM------GS 241
Query: 335 DHCPVSLEL 343
DHCPV L +
Sbjct: 242 DHCPVELVI 250
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S+ LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSDPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 66/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P++
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPED-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P +V + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGIGVEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER+ F L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R RIDYF+VSE LK++I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GS 241
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 139/312 (44%), Gaps = 63/312 (20%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
++ +KF++WN N L VK N F TFD D LQE ++ A +
Sbjct: 8 RRTNMKFISWNVNGLRAIVKKN---FLEAFETFDADFFCLQETKLQAGQIE--------- 55
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
L P + Y W+ A+ K Y+GTA+ K+ +E+
Sbjct: 56 -----------------LDLPGYTQY---WNYAEKKGYSGTAIFAKEPALAAHYGIGIEE 95
Query: 157 TD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 213
D GRVI E+ F+L+ Y PN + E R W+ + ++ KP+I C
Sbjct: 96 HDAEGRVITLEYPEFFLVTCYTPNA--QNELRRLDYRMTWEDAFRAYLTDLKQQKPVILC 153
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H+ ID+ + K + GFT ER++F +L G D +
Sbjct: 154 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEEREKFSTLLSAG-FTDTF 197
Query: 274 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
R+ + D + +S WS + RIDYF+VS++L DR++ ++ +
Sbjct: 198 RYFY--PDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEIL------ 249
Query: 333 GSDHCPVSLELS 344
GSDHCPV L+L+
Sbjct: 250 GSDHCPVELQLN 261
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 143/307 (46%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINMEHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGD 215
+GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ CGD
Sbjct: 87 KEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYF+VS L+DRI + + GS
Sbjct: 189 FN--PDIEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GS 240
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 241 DHCPVKL 247
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 66/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P V + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLHVIYGIGVEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE Y++ Y PN+ E + R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENVYVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELEKKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER+ F L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R RIDYF+VSE LK++I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GS 241
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 143/307 (46%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINMEHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGD 215
+GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ CGD
Sbjct: 87 KEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYF+VS L+DRI + + GS
Sbjct: 189 FN--PDLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GS 240
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 241 DHCPVKL 247
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFHEADADIFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L + Y +W+ A K Y+GTA+ KK +P VS+ L
Sbjct: 39 ---QEGQLNL-------ELERYHQYWNYAVKKGYSGTAVFTKK--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE FY + Y PN+ + E R KW+ + ++ + K P+I GD
Sbjct: 87 QEGRVITCEFEDFYFVTVYTPNS--QSELARLDYRMKWEDDFRAYLKKLEKKKPVIVTGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +++ + WS + + RIDYF VSE LKDR+ ++ L GSD
Sbjct: 189 FYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLADAKI------LTEVMGSD 241
Query: 336 HCPVSLEL 343
HCP+ L+L
Sbjct: 242 HCPIELDL 249
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCG 214
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I CG
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVIVCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P K + GF+ ER++F +L G ID +R
Sbjct: 144 DLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + K+ + WS + + RIDYF+ S LK R+ + + GS
Sbjct: 188 YFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKNILGS 240
Query: 335 DHCPVSLEL 343
DHCPV LEL
Sbjct: 241 DHCPVGLEL 249
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 142/308 (46%), Gaps = 67/308 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F NF D D+ LQE ++
Sbjct: 3 KLISWNVNGLRACVTKG---FENFFKDVDADIFCLQETKL-------------------- 39
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
+E ++ L+ + Y +W AD K Y+GTA+ K+ +P V + +
Sbjct: 40 --QEGQIDLL-------LEGYHQYWCYADKKGYSGTAMFTKE--EPLNVCYGIGIDEHDH 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AEF+ +++ Y PN+ + E R KW+ + ++ + KP+I CGDL
Sbjct: 89 EGRVITAEFDNCFVVTCYTPNS--QSELKRLDYRMKWEDDFKAYLKKLEEKKPVIMCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER + A+L +G ID YR+
Sbjct: 147 NVAHKEIDLKNP---------------KTNRKNAGFTDEERSKMTALLDDG-FIDTYRYF 190
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D + +S WS + + RIDYFIVS+ L+ + + G I E GSD
Sbjct: 191 Y--PDTEGVYSWWSYRFKAREKNAGWRIDYFIVSKALESK-----LDGAKIHTE-ILGSD 242
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 243 HCPVELTI 250
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 77/314 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 ---GSDHCPVVLFL 249
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 145/307 (47%), Gaps = 66/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS--LEKTD 158
Y ++W+ A K Y+GTA+ K+ +P +V + LE+ D
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGIGLEEHD 87
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENVFVITVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER+ F L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R RIDYF+VSE LK++I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIEDASISADVM------GS 241
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNVGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCG 214
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I CG
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVIVCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P K + GF+ ER++F +L G ID +R
Sbjct: 144 DLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + K+ + WS + + RIDYF+ S LK R+ + + GS
Sbjct: 188 YFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGS 240
Query: 335 DHCPVSLEL 343
DHCPV LEL
Sbjct: 241 DHCPVGLEL 249
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K + ++ N I + D LQE++M + G D
Sbjct: 1 MRFVSWNVNGLRACIKKGFLDYFNEI---NADFFCLQEIKM-SEGQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+ Y+ +++ A K Y+GTA+ K K +E+ D
Sbjct: 47 ------------------LEGYETYYNYAQRKGYSGTAIFTKYTPLSVKYGMGIEEHDNE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GR+I E+E F+L+ Y PN+ K+E R W+ + ++L+ + K +I CGDLN
Sbjct: 89 GRLITLEYEDFFLVTCYTPNS--KQELLRLDYRMVWEDAFRNYLLELNKTKSVIVCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+ +P K + GFT ER++ +L G D +R+ +
Sbjct: 147 VAHKEIDLKNP---------------KTNRKNAGFTDQEREKMSILLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+K+ + + WS + R RIDYF+ S+++ DR++ ++ + GSDHC
Sbjct: 191 PDKENEYSW-WSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIH------QRILGSDHC 243
Query: 338 PVSLEL 343
PV LE+
Sbjct: 244 PVYLEI 249
>gi|256545331|ref|ZP_05472695.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
gi|256399012|gb|EEU12625.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
Length = 275
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 139/320 (43%), Gaps = 65/320 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N S I + D DVI LQE ++P G K HQ
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAVMSRDVLKTIISEDADVICLQETKLPRTG---PSKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ ++ F +Y W A YAG L KK Q K
Sbjct: 58 KILEEY------------------FPSYDYAWVSSQEPARKSYAGCLTLYKKNLQTKITF 99
Query: 152 FSLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
L+ D R+I EFE FYL Y PN G N R+ WD++ ++
Sbjct: 100 PVLDAPDTMDQEARIITLEFEKFYLTQVYTPNAG--NGLNRLGLRQIWDEKFANYLENLD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
K +I CGD NV+H+EID+ HPE N E GFT ER F +L
Sbjct: 158 KNKAVIACGDFNVAHKEIDLKHPE------------NNHE---SAGFTDEERNGFTNLLN 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
+G +D +R++H D++ ++W + K RIDYFIVS+ +KD+I M
Sbjct: 203 KG-FVDTFRYIH--GDVEGKYTWWAQRVKTSKINNSGWRIDYFIVSDRIKDKIKESNMID 259
Query: 324 HGIELEGFYGSDHCPVSLEL 343
G DH P+ L +
Sbjct: 260 SGDR------QDHTPIYLSI 273
>gi|227889124|ref|ZP_04006929.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|227850353|gb|EEJ60439.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
Length = 275
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 142/321 (44%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F NY W A YAGT L K P+
Sbjct: 58 EVLAEI------------------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++ D GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PAIGAPDTMDYEGRILTLEFDNYYVTQVYTPNSG--NELKRLKDRQIWDEKYTEYLQKLD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+H ID+ HPE + GFT ER+ F +LK
Sbjct: 158 KSKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQGFDKLLK 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H +++ +SW + K RIDY+IVS+ + D++ EM
Sbjct: 203 LG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEMID 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DHCP+ LE++
Sbjct: 260 TGDR------KDHCPIMLEIN 274
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 34/231 (14%)
Query: 120 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTY 175
K Y +W YAG A+ KK P VS+ L + DGR++ AE+E FYL+ Y
Sbjct: 137 IKGYHPYWLCKPGGYAGVAIYSKK--MPFNVSYGLGDAEQDEDGRLLTAEYEKFYLVCVY 194
Query: 176 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 234
PN G K + +R +WD++ +++ K P+I CGD+NV+H EID+++P+
Sbjct: 195 VPNAGRKLV--TLPKRMRWDEKFLQYLRDLDAKKPVILCGDMNVAHAEIDLANPK----- 247
Query: 235 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGNPI 293
NK++ GFT ER +L G +D +R + E+ F ++ GN
Sbjct: 248 -------TNKKN---AGFTQEERDGMTNLLSHG-FVDTFRQRYPEQKAAYTFWTYMGNAR 296
Query: 294 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
K G R+DYFI SE L R++ ++ G YGSDHCP++L L+
Sbjct: 297 AKNVG--WRLDYFIASERLAGRVVDSVIR------PGVYGSDHCPITLLLN 339
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKNILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L +G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNDG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 140/305 (45%), Gaps = 61/305 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK TWN + + +K N ++ I D D+IALQE + G P D+
Sbjct: 75 LKICTWNVSGIRAVIKKNGLDY---IAKEDADIIALQETK---CGKDKMP-------DEI 121
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--- 158
K S L S Y G AL K+ +P V + L ++
Sbjct: 122 KLSGYHHYFL----------------DSKQSGYCGVALFCKE--KPVSVKYGLNNSNFDS 163
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
GR+I AEF F+++N Y PN G K + +R +W+K ++++ + KP+I CGD+
Sbjct: 164 EGRIIAAEFPEFFMVNVYVPNAGQKLV--TLPKRLEWNKIFKKYIEELDQKKPVIICGDM 221
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER L G ID +R L
Sbjct: 222 NVAHQEIDLKNP---------------KTNTKNAGFTKEERDGMTDFLAAG-FIDTFRLL 265
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K+ F WS + + R+DYF+ SE +K++I C+ I + YGSDH
Sbjct: 266 YPDKEGAYTF-WSYFANARNKDIGWRLDYFLASERIKNKI--CD----NIIRKQVYGSDH 318
Query: 337 CPVSL 341
CPV L
Sbjct: 319 CPVIL 323
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARNKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 155/325 (47%), Gaps = 62/325 (19%)
Query: 27 ETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG 86
+ + + ++ KK LK +WN + + +K + N++ DP ++ LQE++
Sbjct: 46 DAPDNLTSDDGKKYTLKISSWNVDGIRAWIKK---QGLNWVREEDPHIMCLQEIKC---- 98
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKC 144
EKL+ P + + +W+ D K Y+G A+L K
Sbjct: 99 -------------------AEKLLPPEIKDMPEYPHK--YWACPDEKEGYSGVAMLCKD- 136
Query: 145 FQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE 200
+P V++ + +GRVI AEF++F+L+ Y PN+ R++WD +
Sbjct: 137 -KPLNVTYGIGIEEHDKEGRVITAEFDSFFLIAAYVPNSS--RGLVRLDYRQRWDVDFRA 193
Query: 201 FVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 259
++ S KPLI CGDLNV+H+EID+ +P K + PGFT ER+
Sbjct: 194 YLKGLDSKKPLILCGDLNVAHQEIDLKNP---------------KTNKKTPGFTPQERQG 238
Query: 260 FGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 319
FG +L EG L D++R L+ +K F W+ + + R+DYF++S+ L+ +
Sbjct: 239 FGELLAEGYL-DSFRELYPDKPSAYTF-WTYMMNARAKNVGWRLDYFVLSKALRPALCDS 296
Query: 320 EMQGHGIELEGFYGSDHCPVSLELS 344
+++ GSDHCP++L ++
Sbjct: 297 KVRSK------IMGSDHCPITLLMA 315
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARNKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|409045646|gb|EKM55126.1| hypothetical protein PHACADRAFT_120160 [Phanerochaete carnosa
HHB-10118-sp]
Length = 347
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 151/322 (46%), Gaps = 70/322 (21%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
K D ++ TWN L K F ++ D DV+ L E ++ D+P
Sbjct: 76 KADSIRIATWNICGLAASSKKG---FKYYVEAEDADVLILTETKV-----NDSPA----- 122
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL-- 154
+ L+ R P + +WS++ K Y+GTA+L K +P V ++L
Sbjct: 123 ---------DPLLTKRY----PHR----YWSISAKKTYSGTAILCK--VKPLSVDYTLPG 163
Query: 155 ----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-P 209
E GR++ EFE Y++ TY N G + +R W+K ++ K P
Sbjct: 164 HPDPEHVRGRILTLEFENVYVVGTYVVNAG--TGLKTLPEKRTWNKHFHAYIHSLDAKKP 221
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAIL---K 265
+IW GDLNV+ E+D+++P K +W + PG+T E F +L +
Sbjct: 222 VIWTGDLNVAPTELDLANP---------------KPNWNKTPGYTEDETSAFKRVLGPEE 266
Query: 266 EG--RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
EG ++ID +R LH + FS+ N + +G R+D+F+VSE L +++ CE++
Sbjct: 267 EGQKKMIDVWRHLHPKLRHYTYFSYRQN--CRSKGVGWRLDHFVVSERLLEKVDMCEIRS 324
Query: 324 HGIELEGFYGSDHCPVSLELSE 345
E + SDHCPV+LE+ +
Sbjct: 325 -----EIYGASDHCPVTLEIGK 341
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 145/307 (47%), Gaps = 66/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P +V + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLRVMYGIGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENVFVMTIYTPNSRRGLERIDY--RMQWEEALLSYILELDKKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER F +L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRKNAGFSDQERGAFSRLLEAG-YVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R RIDYF+VSE LK++I + GI + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQI-----EDAGIS-KDVMGS 241
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 146/327 (44%), Gaps = 87/327 (26%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN N L +K F FI T PDV+ LQE T
Sbjct: 1 MKIYSWNVNGLRAVLKKGL--FMPFIETHQPDVLCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
K+ RE+ I Y +W+ A +K Y+GTA+ + +P V+ K
Sbjct: 38 KSEREQVEI--------DLAGYHEYWNSATTKGYSGTAIFSRT--EPLSVTNGFAKAVAK 87
Query: 157 -------------TDGRVILAEFETFYLLNTYAPNNGWKEEENSF-QRRRKWDKRIQEFV 202
T+GRVI AEFE F+++ Y PN K++ + R + WD F+
Sbjct: 88 KYTLVDDAGRDSETEGRVITAEFEKFFVVTVYTPNA--KDDLSRLPLRSQHWDA---AFL 142
Query: 203 LQCSG----KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 258
C KP+++CGDLNV+H E+D+++P+ PN+ G+ GFT ER+
Sbjct: 143 AHCKALEMKKPVVFCGDLNVAHTELDLANPK------------PNR---GRKGFTDEERQ 187
Query: 259 RFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRII 317
F + L G +D R H+ + +S WS + R RIDY +VS L+ +
Sbjct: 188 GFQSFLDAG-FVDTLRMFHQG---NGHYSWWSHFANSRARNVGWRIDYVLVSAALQKSVA 243
Query: 318 ACEMQGHGIELEGFYGSDHCPVSLELS 344
E+ + GSDHCPVS+ LS
Sbjct: 244 TAEIHADVM------GSDHCPVSVTLS 264
>gi|421893824|ref|ZP_16324317.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
gi|385273309|emb|CCG89689.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
Length = 251
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 137/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D+ +QE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFKELDADIFCIQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ KK + +EK D
Sbjct: 45 -------------LELPHYYQY---WNYAEKKGYSGTAIFTKKKPLTVRYGLGIEKHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GRVI EFE FY++ Y PN+ + + + R WD + ++ Q + KP+I+CGDLN
Sbjct: 89 GRVITLEFEKFYVITCYTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHKPVIFCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+EID+ + +K + GFT ER +F +L G D YR+ +
Sbjct: 147 VAHQEIDLKN---------------DKTNHKNAGFTDEERNKFTQLLNSG-FTDTYRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
K+ + WS + RIDYF+ S+ L ++ ++ +GSDHC
Sbjct: 191 PSKEGVYSW-WSYRFNARANNAGWRIDYFVSSKVLDQKLTDAQIHTE------IFGSDHC 243
Query: 338 PVSLEL 343
PV L+L
Sbjct: 244 PVELDL 249
>gi|357054575|ref|ZP_09115657.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
gi|355384175|gb|EHG31244.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
Length = 251
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 142/309 (45%), Gaps = 69/309 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDDT 101
K ++WN N L V F +F D +V +QE ++ + D P HQ
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFREADANVFCIQESKLQEGQIELDLPGYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+W+ A K Y+GTA+ K+ +P VS+ +
Sbjct: 54 ------------------------YWNYARKKGYSGTAMFTKE--EPMSVSYGIGMEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI AEF +Y++ Y PN+ ++ R KW+ ++ + KP+++CGD
Sbjct: 88 TEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLAYLKKLEKNKPVVFCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G +D +R+
Sbjct: 146 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLAAG-FVDTFRY 189
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + + RIDYF VSE LKDR+++ + + GS
Sbjct: 190 FY--PDLEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHNTVM------GS 241
Query: 335 DHCPVSLEL 343
DHCPV L +
Sbjct: 242 DHCPVELVI 250
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 144/309 (46%), Gaps = 66/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K F +F PD LQE +M G D L+
Sbjct: 1 MKLISWNVNGLRACLKKG---FLDFYQEQKPDFCCLQETKMEQ-GQADVDLGENMLE--- 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+W+ A+ K Y+GTA+ QP V + + K +
Sbjct: 54 ------------------------YWNSAEKKGYSGTAVFTPH--QPLAVRYGMGKEEHD 87
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
GR+I E+E FYL+ Y PN+ + E R +W+ ++ ++++ KP+I+CGD
Sbjct: 88 HEGRLITLEYEKFYLVCCYTPNS--QSELKRLDYRMEWEDDLRAYLMELDKVKPVIYCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P+ ++N GFT ER++ +L G D +RF
Sbjct: 146 LNVAHREIDLKNPK---TNRMNA------------GFTDQEREKMTTLLSSG-FTDTFRF 189
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ D++ +S WS + + RIDYFIVS+ L++ I E+ L GS
Sbjct: 190 LY--PDLEGVYSWWSYRFQARKKNAGWRIDYFIVSDRLQNAIKRAEI------LTQVEGS 241
Query: 335 DHCPVSLEL 343
DHCPV LEL
Sbjct: 242 DHCPVLLEL 250
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 135/304 (44%), Gaps = 60/304 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + F + D D +QE ++ G D
Sbjct: 1 MKFISWNVNGLRAAVTHG---FMDTFNQLDADFFCVQETKLQL-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P NY +W+ AD K Y+GTA+ K + +++ D
Sbjct: 45 -------------LKLP--DNYYQYWNYADKKGYSGTAIFTKHKPLNASLGIGIDEFDHE 89
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLN 217
GRVI E+ +FYL+ Y PN+G + + F R+ W+K +++ Q S K +I+CGDLN
Sbjct: 90 GRVITLEYPSFYLITCYTPNSGQQLKRLDF--RQNWNKAFLDYINQLSAKKDVIFCGDLN 147
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+HE ID+ +P + GFT ER F +L E +D YR +
Sbjct: 148 VAHETIDLKNP---------------SSNHHAAGFTDEERNDFTHLL-ESNFVDTYRHFY 191
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + WS + R RIDYF+ S L D+++ ++ +GSDHC
Sbjct: 192 PEVTEQYSW-WSYRFHSRDRNAGWRIDYFVTSTGLTDQLVDAKIHSE------IFGSDHC 244
Query: 338 PVSL 341
PV L
Sbjct: 245 PVEL 248
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
++ V+WN N + ++ F +F D D+ +QE +M P + P HQ +
Sbjct: 1 MRLVSWNVNGIRACMQKG---FMDFFNEIDADIFCIQETKMQPGQLEIETPLYHQYMNSA 57
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EK 156
K Y+GT + K+ +P VS+ L
Sbjct: 58 EKKG-----------------------------YSGTMVFSKQ--EPIHVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E+E FYL+ Y PN+ K+ R +W+ + ++ + + K ++ CGD
Sbjct: 87 HEGRVITCEYEDFYLVCVYTPNS--KDGLLRLDYRMEWEDAFRTYLHKLNETKSVLVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + +L G ID+YR+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERNKMSVLLDSG-FIDSYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E++ + WS + + RIDYF+VSE+ KD I ++ YGSD
Sbjct: 189 LYPEQEGVYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDGIREAKIH------TDIYGSD 241
Query: 336 HCPVSLEL 343
HCPVSLE
Sbjct: 242 HCPVSLEF 249
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 143/307 (46%), Gaps = 66/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P +V + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGIGVEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER+ F L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R RIDYF+VSE LK++I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GS 241
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|346986376|ref|NP_001231340.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
gi|344257035|gb|EGW13139.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
Length = 317
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 160/342 (46%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ K LK +WN + L +K + +++
Sbjct: 33 EKEAAGEGPFLYEDAPDNKTSP-----GGKLATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P Q+L P +Q W +
Sbjct: 85 EEAPDILCLQETK---CSENKLPAELQDL---------------------PGLTHQYWSA 120
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 121 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 176
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WDK +F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 GLVRLEYRQRWDKAFCKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 224
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 225 NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTPYAYTF-WTYMMNARAKNVGWR 280
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 281 LDYFLLSHSLLSSLCDSKIRSKAL------GSDHCPITLYLA 316
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 157/338 (46%), Gaps = 67/338 (19%)
Query: 19 LSPSKKDGETTETSSEENS-KKDP---LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDV 74
LSP+KK T S ENS KKD LKF++WN NSL ++ + N ++ DPD
Sbjct: 21 LSPTKKKNCTQLDSITENSPKKDTETLLKFLSWNVNSLKRVLERK--QLVNLVSQEDPDF 78
Query: 75 IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK- 133
I LQE ++ E+K+ A P +K + ++ ++K
Sbjct: 79 ICLQETKL----------------------TEDKV--PGAFLLPQYKKF---FNCCETKR 111
Query: 134 -YAGTALLVKKCFQPKKV------SFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEEN 186
Y+GTAL K P V +S GR+I+AE+E FY+ + Y PN+G K +
Sbjct: 112 GYSGTALFSK--MAPIAVLKDFEGVYSEHNKTGRLIVAEYENFYVASVYVPNSGDKLKNL 169
Query: 187 SFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 245
+ R WD ++ + KP++ GDLNV+H++IDV PE +
Sbjct: 170 EY-RVHSWDPSFCSYICELQMKKPIVLLGDLNVAHQDIDVYAPERLGS------------ 216
Query: 246 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 305
+ GF +ER F L+E +++D++R+L+ + F W G+ R + RIDY
Sbjct: 217 ---KAGFVQSERNNFSKFLEETKMVDSFRYLYPHRKEAYSF-WDYKTGGRLRNQGWRIDY 272
Query: 306 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
++S L L+ GSDHCP+ +++
Sbjct: 273 CLLSSSLV------SNLVDAFILDKIEGSDHCPIGIQM 304
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|323141860|ref|ZP_08076721.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
gi|322413607|gb|EFY04465.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
Length = 236
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 134/288 (46%), Gaps = 65/288 (22%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F+ F+ PD+I LQE +M R + F
Sbjct: 5 FAEFLQEAAPDIICLQETKM-----------------------------QREQADFVFPG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAP 177
Y+ +W+ A+ K Y+GTA+ K +P V++ L +GRVI EF +FYL+ Y P
Sbjct: 36 YEEYWNSAERKGYSGTAVFTK--VKPLAVTYGLGQEEHDKEGRVITLEFASFYLVTVYTP 93
Query: 178 NNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKL 236
N+ K+ R W+ + ++ + K P++ CGDLNV+ EEID+ +P
Sbjct: 94 NS--KDGLARLDYRMVWEDVFRAYLQELDAKKPVVVCGDLNVAAEEIDLKNP-------- 143
Query: 237 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 295
K + GFT ER +F LK D++R+LH E + +S WS +
Sbjct: 144 -------KTNRRNAGFTDEERAKFRE-LKAAGFTDSFRYLHPE---EVKYSWWSYRFKAR 192
Query: 296 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ RIDYF+VS+ + D++ + E+ +GSDHCPVS+EL
Sbjct: 193 EKNAGWRIDYFVVSDRIADKLQSAEIHNE------VFGSDHCPVSIEL 234
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 36/228 (15%)
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLE----KTDGRVILAEFETFYLLNTYAPNN 179
Q W+ Y+GTA++ K +P V++ + +GRVI E+E +YL+ Y PN
Sbjct: 53 QYWYDAEKKGYSGTAIITKN--KPLNVTYGIGVDEFDHEGRVITLEYEDYYLMTVYTPNA 110
Query: 180 GWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 238
+ + R KW + F+ + KP+++CGDLNV+H+ ID+ +P
Sbjct: 111 --QRDLKRLGFRLKWGQAFTNFIDRLDRRKPVVFCGDLNVAHQAIDLKNP---------- 158
Query: 239 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 298
K + GFT ER+ F +L G ID++R+LH D + +SW + +G R
Sbjct: 159 -----KSNMKNAGFTAEERQDFSELLDTG-FIDSFRYLH--PDREGAYSW-WSYMGNARA 209
Query: 299 KRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+ + RIDYF++SE LK RI ++ L GSDHCPV +EL+
Sbjct: 210 RNVGWRIDYFVISERLKKRIKDAKI------LADVRGSDHCPVEIELA 251
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
++E+ I FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQNIF-------EFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|440801517|gb|ELR22535.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 317
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 139/311 (44%), Gaps = 61/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L K ++ DPDVI QE T
Sbjct: 61 MKLISWNLNGLNAVHKKG--HLVKYVRDEDPDVICFQE---------------------T 97
Query: 102 KASREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSL----EK 156
K + + P ++ W S+ YAGTA K +P V++ +
Sbjct: 98 KTQTSTAIAQLLGNDYP----HEYWNHSVNKLGYAGTATFSK--VKPVSVTYGIGIAEHD 151
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI EF+ FYL+NTY PN G K E + R++W+K ++ KP++WCGD
Sbjct: 152 GEGRVITTEFDRFYLVNTYIPNAGQKLERLGY--RQEWNKDFLAYLKNLEQTKPVVWCGD 209
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H +ID+++P K + GFT ER+ FG +L+ G +D +R
Sbjct: 210 LNVAHHDIDIANP---------------KTNQKTAGFTKEERRDFGQLLESG-FVDTFR- 252
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H+ D+ WS + + R+DYF+VS KD + C+ GSD
Sbjct: 253 -HQNPDLQQFTYWSNRFNCRAKNLGWRLDYFVVS---KDFLPECDKS---FVRPNALGSD 305
Query: 336 HCPVSLELSEA 346
HCP+ L + +A
Sbjct: 306 HCPIGLLVRKA 316
>gi|16082631|ref|NP_394956.1| exonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 138/305 (45%), Gaps = 64/305 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPD---VIALQEVRMPAAGSKDAPKNHQELKD 99
KF++WN N L VKN ++ F D IALQE K
Sbjct: 4 KFLSWNVNGLRAAVKNG------AVSVFKQDDYFGIALQET-----------------KA 40
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDG 159
D+ + EE L L + P K Y+GT LV++ +P VS+ E +G
Sbjct: 41 DSTSVPEEMYHLGYYLYNNPAKK---------KGYSGTMSLVRE--KPIDVSYGFENEEG 89
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 218
R++ EF+ FY +N Y PN + + +D++ E+ + KPLI CGD NV
Sbjct: 90 RILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFDEKFLEYSNELRKKKPLIICGDFNV 147
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+HEEID++ P K++ GFT ER L G +D YR K
Sbjct: 148 AHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG-YVDTYRIFMK 191
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
E +S+ N K G RIDYF+VS++++DR+ E+ LE GSDH P
Sbjct: 192 EGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------LETVTGSDHAP 243
Query: 339 VSLEL 343
V+LE+
Sbjct: 244 VTLEV 248
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|347531556|ref|YP_004838319.1| exodeoxyribonuclease [Roseburia hominis A2-183]
gi|345501704|gb|AEN96387.1| exodeoxyribonuclease [Roseburia hominis A2-183]
Length = 255
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 135/309 (43%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L ++ F+ F T D D+ +QE ++ AP+
Sbjct: 1 MKLISWNVNGLRACMQKG---FAEFFTASDADIFCIQESKLQEGQIDFAPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ +K +P V + +
Sbjct: 50 ---------------------YYAYWNYAQKKGYSGTAIFTRK--EPLSVHYGIGIPQHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EF FY++ Y PN+ + E R +W+ ++ KPLI CGD
Sbjct: 87 TEGRVITLEFPDFYMVTCYTPNS--QNELARLSYRMEWEDAFLSYLKGLDRNKPLILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER + A+L G D +R
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRKNAGFTDEERTKMTALLSAG-FTDTFR- 187
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D + +S WS + + RIDYFI S L DR++ + L GS
Sbjct: 188 -HFYPDTEGIYSWWSYRFHAREKNAGWRIDYFITSSALDDRLVDAGI------LTDVTGS 240
Query: 335 DHCPVSLEL 343
DHCPV+L +
Sbjct: 241 DHCPVTLTV 249
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 136/307 (44%), Gaps = 61/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK N F TFD D LQE ++ A +
Sbjct: 1 MKFISWNVNGLRAIVKKN---FLEAFETFDADFFCLQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ +E+ D
Sbjct: 45 -------------LDLPGYTQY---WNYAEKKGYSGTAIFAKEPALAAHYGIGIEEHDAE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLN 217
GRVI E+ F+L+ Y PN + E R W+ + ++ KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFLVTCYTPNA--QNELRRLDYRMTWEDAFRAYLTDLKQQKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQNIDLKNW---------------KTNQKNAGFTPEEREKFSTLLSAG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+ + + WS + RIDYF+VS++L DR++ ++ + GSDHC
Sbjct: 191 PDAEGIYSW-WSYRFNARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEIL------GSDHC 243
Query: 338 PVSLELS 344
PV L+L+
Sbjct: 244 PVELQLN 250
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|421491432|ref|ZP_15938798.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
gi|400371534|gb|EJP24493.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
Length = 275
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + T D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVTLDADIIAIQETKLSAKGPT---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L ++ L F NYQ W A YAGT L K+ PK ++
Sbjct: 57 -------------LTILEEL----FPNYQHTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F S +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTTL 156
Query: 206 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 137/308 (44%), Gaps = 68/308 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KFV+WN N L V +F+ T + D LQE +M A G D
Sbjct: 3 KFVSWNVNGLRACVSK---DFAQTFETLNADFFCLQETKMQA-GQLDLQ----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
F Y +W+ AD K Y+GTA+ +K +P V++ +
Sbjct: 48 -----------------FPGYTSFWNYADKKGYSGTAIYARK--EPLSVAYGIGIDEHDH 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI E+E FYL+N Y PN ++ R W+ Q ++ + KP+I CGD+
Sbjct: 89 EGRVITLEYEDFYLVNVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDARKPVIVCGDM 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ +P K + GFT ER + +L G D +R L
Sbjct: 147 NVAHEEIDLKNP---------------KTNHRNAGFTDEERAKMTQLLGNG-FTDTFRNL 190
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E +S WS + + RIDYF++S+ L+ R+ + +GSD
Sbjct: 191 YPEA---IKYSWWSYRFRAREKNTGWRIDYFLISDRLRPRLKEAAIHNE------IFGSD 241
Query: 336 HCPVSLEL 343
HCPV ++L
Sbjct: 242 HCPVEVDL 249
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D D+ +QE +M H +
Sbjct: 1 MKLISWNVNGLRACLSKG---FEDFFNTADADIFCIQETKM-----------HPD----- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
E LI Y+ +W+ A K Y+GTA+ + P V++ L
Sbjct: 42 --QAEIGLI-----------GYEKYWNSAVKKGYSGTAVFTR--ITPLSVTYGLNIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR+I EFE F+L+N Y PN+ K E R +W+ + ++ KP+I CGD
Sbjct: 87 QEGRIITLEFEDFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLTALDQSKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER + A+L+ G D +R
Sbjct: 145 INVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLEAG-FTDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
++ +K +D WS + R RIDYF+VS L+D I + GSD
Sbjct: 189 IYPDK-IDAYTWWSYMMNARARNIGWRIDYFLVSNTLRDAIKEATI------YPDVMGSD 241
Query: 336 HCPVSLEL 343
HCP+ LE+
Sbjct: 242 HCPIGLEI 249
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHN 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|406666269|ref|ZP_11074037.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
gi|405385808|gb|EKB45239.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
Length = 252
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 137/309 (44%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F ++ D D LQE + + +
Sbjct: 1 MKFISWNVNGIRACVNKG---FLDYFREMDADFFCLQETKCQVGQIDLQLEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK----T 157
YQ W S Y+GTA+ K +P V + +E
Sbjct: 51 ---------------------YQYWHSAVKKGYSGTAVFTKH--EPLAVYYGIENEIAAD 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
+GR++ E+E FYL+NTY PN K + + R W+ R++ ++ + K P+I+CGDL
Sbjct: 88 EGRILTLEYENFYLVNTYTPNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H E+D+ + K + G GFT ER + +L G D +R
Sbjct: 146 NVAHSELDIKNV---------------KSNIGNSGFTYEERGKMTDLLTSG-FTDTFRHF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D+ F+W + + K R + + RIDYFI+S+ L ++I + + GS
Sbjct: 190 H--PDVTDHFTW-WSYMAKVRERNIGWRIDYFIISDRLVEKIEEASIHSEIL------GS 240
Query: 335 DHCPVSLEL 343
DHCP+ L+L
Sbjct: 241 DHCPIVLKL 249
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARNKDIGWRIDYFLCSNPLKTRL------KDALIYKDTLGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 151/310 (48%), Gaps = 66/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN N + R N ++ +PD++ LQE T
Sbjct: 1 MKLATWNVNGI--RSVLNKGALQEYVLESNPDILCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
KA +++ + M F Y+++++ A K Y+GTA+ K+ +P V + +
Sbjct: 38 KAQQDQVELGME------FSEYEVFFNSAVKKGYSGTAIFTKE--KPLSVEYGIGIEEHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI AE+E FYL+ Y PN K + + + R+ W+ F+ + KP+I+CGD
Sbjct: 90 QEGRVITAEYEKFYLVTVYTPNA--KRDLSRLEYRQVWEDDFLAFIKKLEETKPVIFCGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+++P K + GFT ER +F ++ L+DA+R+
Sbjct: 148 LNVAHKEIDLANP---------------KTNTMNAGFTKEERAKFDQVVN-NDLVDAFRY 191
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ D +SW + +G R + + RIDYF++S+ L + +++ G
Sbjct: 192 LY--PDTLGAYSW-WSYMGGARARNVGWRIDYFVISQPLTAFLQEVKIRSD------VTG 242
Query: 334 SDHCPVSLEL 343
SDHCPV +++
Sbjct: 243 SDHCPVEMKI 252
>gi|212697551|ref|ZP_03305679.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
gi|212675454|gb|EEB35061.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
Length = 275
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 143/319 (44%), Gaps = 63/319 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N + S + I D D+I LQE ++P G K H+
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTG---PSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E+ + S P NY W S A YAG KK F+P
Sbjct: 58 EILE----------------SYFPQYNYA-WISSQEPARKSYAGCLTFYKKEFEPIISYP 100
Query: 153 SLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 206
+L+ D R+I EFE FYL Y PN G + R+ WDK+ ++ +
Sbjct: 101 TLDAPDTMDQEARLITLEFENFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLDQ 158
Query: 207 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
KP+I CGD NV+H+EID+ HPE + GFT ER F +L +
Sbjct: 159 NKPVIACGDFNVAHKEIDLKHPE---------------NNHKSAGFTDEERSGFTNLLNK 203
Query: 267 GRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
G +D +R+LH D++ ++W + K RIDYFIVS+ +K++I +M
Sbjct: 204 G-FVDTFRYLH--GDVEGKYTWWAQRVKTSKINNSGWRIDYFIVSDRIKEKIKESDMIDS 260
Query: 325 GIELEGFYGSDHCPVSLEL 343
G DH P+ + +
Sbjct: 261 GDR------QDHTPIYINM 273
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|116630243|ref|YP_815415.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|420148175|ref|ZP_14655447.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
gi|116095825|gb|ABJ60977.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|398400333|gb|EJN53898.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
Length = 268
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 150/321 (46%), Gaps = 68/321 (21%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSK 88
E +SE ++ +KF++WN N L +++ F N T D D+ A+Q+ R+ P
Sbjct: 3 ELTSELIERRIIMKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEPNEVQI 59
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQP 147
D P +Q +W+ A K YAGTA+ K+ +P
Sbjct: 60 DLPGYYQ------------------------------YWNYAKRKGYAGTAVFTKE--KP 87
Query: 148 KKVS--FSLEKTDG--RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
V+ F + + DG R I EF FY ++ P +G K + F R W + + +V
Sbjct: 88 ITVANGFGVPEVDGEGRSITLEFSNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVT 145
Query: 204 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ KP+I GD++V+H++ID++ P+ ++ GFT ERK F
Sbjct: 146 KLMQYKPVIIGGDMSVAHDKIDLAEPD---------------DNHRHAGFTGIERKEFSE 190
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+L G ID +R+ H ++ +S+ + K G R+DYF+VS L+D++I ++
Sbjct: 191 LLNAG-FIDTFRYFHPDEAKYTYWSYREDARAKNIG--WRLDYFLVSNNLEDKMINAQI- 246
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
L GSDHCP+ L+L
Sbjct: 247 -----LNNIMGSDHCPIELDL 262
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| AAEL010781-PA [Aedes aegypti]
Length = 612
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 34/230 (14%)
Query: 120 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTY 175
K Y +W YAG A+ KK P V++ L + DGR++ AE+E F+L+ Y
Sbjct: 409 IKGYHPYWLCKPGGYAGVAIYSKK--MPFNVTYGLGDEEQDADGRLLTAEYEKFFLVCVY 466
Query: 176 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 234
PN G + +R +WD++ +++ K P+I CGD+NV+HEEID+++P+
Sbjct: 467 VPNAG--RGLVTLPKRMRWDEKFHKYLKDLDAKKPVILCGDMNVAHEEIDLANPKT---- 520
Query: 235 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGNPI 293
NK++ GFT ER+ +L G +D +R L+ E+ F ++ GN
Sbjct: 521 --------NKKNA---GFTPEEREGMTKLLSLG-FVDTFRQLYPEQSGAYTFWTYMGNAR 568
Query: 294 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
K G R+DYFI SE +++ + G YGSDHCP++L L
Sbjct: 569 AKNVG--WRLDYFITSERFVGKVV------DNVIRSGVYGSDHCPLTLFL 610
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 143/307 (46%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINMEHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGD 215
+GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ CGD
Sbjct: 87 KEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYF+VS L+DRI + + GS
Sbjct: 189 FN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GS 240
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 241 DHCPVKL 247
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 143/307 (46%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINMEHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGD 215
+GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ CGD
Sbjct: 87 KEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYF+VS L+DRI + + GS
Sbjct: 189 FN--PDLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEIL------GS 240
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 241 DHCPVKL 247
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 144/311 (46%), Gaps = 69/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L + F +F D D+ +QE +M H + D
Sbjct: 1 MRLISWNVNGLRACMNKG---FMDFFRQIDADIFCIQESKM-----------HPDQADFV 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y +W+ A+ K Y+G +L K+ +P V + +
Sbjct: 47 ------------------FDGYHGYWNSAEKKGYSGVVVLSKQ--EPLCVEYDMGIEHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI AE+ FYL+N Y PN+ K E + R +W+ F+ KPLI CGD
Sbjct: 87 KEGRVICAEYPDFYLINVYTPNS--KRELERLEYRMQWEDDFLNFLKNLERKKPLIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER++ +L+ G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMTTLLENG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ D++ +SW + +G+ R RIDYF+ SE L+ R+I ++ + G
Sbjct: 189 FY--PDLEGAYSW-WSYMGRARQNNTGWRIDYFLCSEILQKRLIEAKIYSEIL------G 239
Query: 334 SDHCPVSLELS 344
SDHCPV L +S
Sbjct: 240 SDHCPVGLVIS 250
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|374583527|ref|ZP_09656621.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374419609|gb|EHQ92044.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 262
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 144/312 (46%), Gaps = 73/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN F +F D D+ LQE T
Sbjct: 1 MKLISWNVNGIRACVKNG---FMDFFLKEDADIFCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK-- 156
K +E+ PF Y +W+ A K Y+GTA+ K +P + + + K
Sbjct: 37 KIQKEQ----------IPFTLDGYYQYWNFAQKKGYSGTAIFSK--IEPLNIVYGMGKEE 84
Query: 157 --TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL---QCSGKPLI 211
+GR+I EFE FY++ YAPN+ + R KW+ +++ +C KP+I
Sbjct: 85 HDKEGRLITLEFEKFYVVTVYAPNS--QRGLARLDYRMKWEDDFLNYIIGLEKC--KPVI 140
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
CGDLNV+H+E+D+ +P NK++ GFT ER +F ++ +G +D
Sbjct: 141 VCGDLNVAHKEMDLKNPS------------TNKKN---AGFTPEERSKFDEVINKG-FVD 184
Query: 272 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+RF + +K + WS + RIDYF VS ELK ++ + + +
Sbjct: 185 TFRFFYPDKTQAYTW-WSYMFNARANNAGWRIDYFCVSAELKSQL------RNAVIYQDV 237
Query: 332 YGSDHCPVSLEL 343
GSDHCPV LE+
Sbjct: 238 LGSDHCPVGLEI 249
>gi|405982630|ref|ZP_11040941.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
gi|404389339|gb|EJZ84415.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
Length = 285
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 146/343 (42%), Gaps = 101/343 (29%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L VK F + D D+IALQE ++ QE + D
Sbjct: 1 MRFVSWNVNGLRAAVKKG---FEESVAALDADIIALQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
LS P + + WS A+ K Y+GTA+ ++ +P + L +
Sbjct: 45 -------------LSLPGYFQF---WSYAERKGYSGTAVFCRQ--KPLRALHGLGDSALD 86
Query: 158 -DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--------------V 202
+GR++ EF+ ++ ++ Y PN + E R WD ++F V
Sbjct: 87 DEGRIVALEFDDYWFVDVYTPNA--QNELARIDHRMAWDDAFRDFCKNLEKGAIPAGVAV 144
Query: 203 LQC---------------------SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 241
C S KP++ CGD NV+H+EID+ +P
Sbjct: 145 QDCAEGEGHVSISELPLTQEGERTSAKPVVMCGDFNVAHQEIDLKNP------------G 192
Query: 242 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKR 300
PN+ G GF+ ER++F +L G +D +R LH D +S WS +
Sbjct: 193 PNR---GNAGFSDEEREKFTRLLDAG-FVDTFRVLH--PDEAGAYSWWSYRFNARKNNAG 246
Query: 301 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
RIDYF+VSE L+D I M GSDHCPVS+EL
Sbjct: 247 WRIDYFLVSESLRDAIHDARMHAD------IMGSDHCPVSVEL 283
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|383754456|ref|YP_005433359.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366508|dbj|BAL83336.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K F D DV LQE +M
Sbjct: 1 MKFISWNVNGLRACLKKG---FMESFCKLDADVFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ E+ IL P +K Y W+ A+ K Y+GTA+ + +P V++ L
Sbjct: 39 ---QPEQAIL----DLPGYKQY---WNSAEKKGYSGTAVFSR--IEPLHVTYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF +L+ Y PN+ K E R +W+ + ++++ KP+I CGD
Sbjct: 87 HEGRVITLEFPEMFLVTVYTPNS--KRELERLAYRMEWEDAFRAYLMKLDEQKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +FG +L G ID +R
Sbjct: 145 LNVAHQEIDLKNP---------------KTNHHNAGFTDEERGKFGELLDAG-FIDTFRT 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ ++ + WS + RIDYF+ S+ L+++I + +GSD
Sbjct: 189 LYPDRTGIYTW-WSYLRKARDNNAGWRIDYFVASKRLQEKIQDATIHNE------IFGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|339521855|gb|AEJ84092.1| DNA-(apurinic or apyrimidinic site) lyase [Capra hircus]
Length = 318
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 160/342 (46%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK WN + +K + ++I
Sbjct: 34 EKEAVGEGAVLYEDPADQKTSPSG-----KSATLKICPWNVDGRRAWIKK---KGVDWIK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS P +Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSGLP---HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+A ++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAGYDAFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEE DV +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEESDVRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSQSLLPAVCDSKIRSKAL------GSDHCPITLYLA 317
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|335998084|ref|ZP_08563996.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
gi|335348598|gb|EGM50099.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
Length = 254
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 141/311 (45%), Gaps = 67/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+ FV+WN N L +K N FS D D +QE ++ + D P HQ
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD- 158
+W+ A+ K Y+GTA+ K +P+ VS+ ++ ++
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKH--EPQSVSYGIKNSEF 85
Query: 159 ---GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
GRVI E+ +FYL+ Y+PN+ K + F R ++ ++ KP+I CG
Sbjct: 86 DHEGRVITLEYASFYLVCCYSPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIMCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ +P K + GF+ ER +L+ G L D +R
Sbjct: 144 DLNVAHEEIDLKNP---------------KTNHRNAGFSNEERSCMTRLLENGYL-DTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
F H ++ + WS + RIDYFIVSE LKD + E+ L GS
Sbjct: 188 FFHPDETGIYSW-WSYRFNARKNNAGWRIDYFIVSESLKDSLENAEI------LTDIMGS 240
Query: 335 DHCPVSLELSE 345
DHCPV LE ++
Sbjct: 241 DHCPVLLETAD 251
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|363900200|ref|ZP_09326706.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|395209879|ref|ZP_10398907.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
gi|361957054|gb|EHL10366.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|394704864|gb|EJF12396.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 137/268 (51%), Gaps = 35/268 (13%)
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 140
+ A K+ ++ Q+L D +E KL + P Y +W+ A K Y+GTA+
Sbjct: 12 LRAVLGKNFMEDFQKLNADIFCLQETKLQEGQIHLDLP--GYFQYWNYAIKKGYSGTAIF 69
Query: 141 VKKCFQPKKVSFSLEKTD----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK 196
K+ +P V + + T+ GRVI EF+ +YL+ Y PN+ + E R +++
Sbjct: 70 TKE--EPLSVQYGIGITEHDQEGRVITLEFKDYYLITVYVPNS--QNELKRLPYRMEFED 125
Query: 197 RIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 255
F+L K P+I+CGDLNV+HEEID+ +P+ LN GF+
Sbjct: 126 AFLNFILNLEKKKPVIYCGDLNVAHEEIDLKNPD---TNHLNA------------GFSDE 170
Query: 256 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 315
ER +F +L G L D++R+ + +K+ + + WS + R RIDYF+VS +LKD+
Sbjct: 171 ERAKFSRVLSSGYL-DSFRYFYPDKEEEYSW-WSYRTKARDRNVGWRIDYFVVSVKLKDK 228
Query: 316 IIACEMQGHGIELEGFYGSDHCPVSLEL 343
+++ + + GSDHCPV + L
Sbjct: 229 LLSASIH------QEVMGSDHCPVEITL 250
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417972789|ref|ZP_12613677.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346330854|gb|EGX99085.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 140/311 (45%), Gaps = 67/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+ FV+WN N L +K N FS D D +QE ++ + D P HQ
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD- 158
+W+ A+ K Y+GTA+ K +P+ VS+ + ++
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKH--EPQSVSYGIHNSEF 85
Query: 159 ---GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
GRVI E+ +FYL+ Y+PN+ K + F R ++ ++ KP+I CG
Sbjct: 86 DHEGRVITLEYASFYLVCCYSPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIMCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ +P K + GF+ ER +L+ G L D +R
Sbjct: 144 DLNVAHEEIDLKNP---------------KTNHRNAGFSNEERSCMTRLLENGYL-DTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
F H ++ + WS + RIDYFIVSE LKD + E+ L GS
Sbjct: 188 FFHPDETGIYSW-WSYRFNARKNNAGWRIDYFIVSESLKDSLENAEI------LTDIMGS 240
Query: 335 DHCPVSLELSE 345
DHCPV LE ++
Sbjct: 241 DHCPVLLETAD 251
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRIITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|366090151|ref|ZP_09456517.1| exodeoxyribonuclease [Lactobacillus acidipiscis KCTC 13900]
Length = 275
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 145/321 (45%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N S I+T+D DVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALLSRDVLKTISTYDADVIAIQETKLSAKG---PTKKHV 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ +D F +Y + W A YAGT + KK P V+
Sbjct: 58 EVLNDF------------------FPDYALAWRSSEEPARKSYAGTMFIYKKSLDPT-VT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+ EFE ++ Y PN+G K + R+ WD++ E++
Sbjct: 99 YPQIGAPATMDQEGRITTLEFEKCFVTQVYTPNSGNKLDR--LSDRQVWDQKYIEYLQTL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP+I GD N +HEEID++HP+ + GFT ER F +L
Sbjct: 157 DQQKPVISSGDFNCAHEEIDLAHPD---------------RNHRSAGFTDEERIDFTKLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+ G D++R +H ++ +SW + K RIDY++VS+ +KD+II EM
Sbjct: 202 ESG-FNDSFRTVH--GNVTGAYSWWAQRVKTSKTNNSGWRIDYYLVSDRIKDKIIKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIYLEI 273
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|393199117|ref|YP_006460959.1| exonuclease III [Solibacillus silvestris StLB046]
gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F ++ D D LQE + + +
Sbjct: 1 MKFISWNVNGIRACVNKG---FLDYFREMDADFFCLQETKCQVGQIDLQLEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK----T 157
YQ W S Y+GTA+ K +P V + +E
Sbjct: 51 ---------------------YQYWHSAVKKGYSGTAVFTKH--EPLAVYYGIENEIAAD 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
+GR++ E+E FYL+NTY PN K + + R W+ R++ ++ + K P+I+CGDL
Sbjct: 88 EGRILTLEYENFYLVNTYTPNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H E+D+ + K + G GFT ER + +L G D +R
Sbjct: 146 NVAHSELDIKNV---------------KSNIGNSGFTYEERGKMTDLLTSG-FTDTFRHF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D+ F+W + + K R + + RIDYFI+S+ L +++ + + GS
Sbjct: 190 H--PDVTDHFTW-WSYMAKVRERNIGWRIDYFIISDRLVEKVEEASIHSEIL------GS 240
Query: 335 DHCPVSLEL 343
DHCP+ L+L
Sbjct: 241 DHCPIVLKL 249
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|336435960|ref|ZP_08615673.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008000|gb|EGN38019.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ F + D D+ +QE +M
Sbjct: 1 MKLVSWNVNGLRACVQKG---FQDIFREIDADIFCVQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L Y +W+ A K Y+GTA+ K+ +P V++ +
Sbjct: 39 ---QEGQLDL-------ELDGYYQYWNYAVKKGYSGTAVFTKQ--EPIGVTYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY + Y PN+ + E R +W+ + ++ KP++ GD
Sbjct: 87 QEGRVITCEFEDFYFVTVYTPNS--QNELKRLDYRMRWEDDFRAYLKALDEKKPVVVTGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H EID+ +P+ N+++ GFT ER +F +L G ID +R+
Sbjct: 145 MNVAHAEIDLKNPK------------SNRQN---AGFTDEERGKFTELLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +++ + WS + + RIDYF VSE +KDR+ ++ L YGSD
Sbjct: 189 FYPDQEGIYSW-WSYRFKAREKNAGWRIDYFCVSERMKDRLSDAKI------LTDIYGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVCLEL 249
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 145/310 (46%), Gaps = 74/310 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ PDV+ +QE ++ + +L D
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMDFLKRESPDVMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y +W+ A+ K Y+GTA+ K +P +V + ++ ++
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAVFTK--IKPNEVIYGIKNSEHN 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
GRVI +F+ +YL+N Y PN+ + + R+KWD+ +V K P+I+CGD
Sbjct: 87 GEGRVITLKFDEYYLVNVYTPNS--QRGLTRLKYRQKWDQDFLNYVKTLENKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ERK F I+ G +D +R
Sbjct: 145 LNVAHKEIDLKNP---------------KTNVKNAGFTPEERKGFDNIVNSG-FLDTFRE 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELEGF 331
+KE D +S+ N + R RIDYF +SE LKD I E+
Sbjct: 189 FNKEPDNYSWWSYRFN--ARARNIGWRIDYFCISESLRNNLKDAFIMSEIM--------- 237
Query: 332 YGSDHCPVSL 341
GSDHCPV +
Sbjct: 238 -GSDHCPVGI 246
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L +G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNDG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 142/307 (46%), Gaps = 66/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P +V + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGIGVEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER F L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R RIDYF+VSE LK++I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIEDASISADVM------GS 241
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|406027905|ref|YP_006726737.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
gi|405126394|gb|AFS01155.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
Length = 256
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 140/307 (45%), Gaps = 65/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK+ +F+ D D +QE +M
Sbjct: 1 MKFISWNVNGLRAAVKH---DFAETFKKLDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+E +L L YQ +++ A+ K Y+GTA+ K P V++ +
Sbjct: 39 ---QEGQLEL-------DLPGYQQYFNYAERKGYSGTAIFTKHA--PLDVTYGINSDEFN 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GR I E+ FYL+ +Y PN+G + F R W+K +++ + K P+I CGD
Sbjct: 87 HEGRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWNKAFYQYLTELDAKKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ + GFT ER+ F +LK G +D +R
Sbjct: 145 LNVAHKEIDLKNPQ---------------SNHHNAGFTDEERQDFTNLLKAG-FMDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ D WS + R RIDYF+ S L D I ++ L +GSD
Sbjct: 189 FYPDQ-TDIYSWWSYRFHSRDRNAGWRIDYFVASNRLADEIEDSKI------LTDVFGSD 241
Query: 336 HCPVSLE 342
HCPV L+
Sbjct: 242 HCPVELD 248
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 143/310 (46%), Gaps = 66/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPDG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P +V + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLRVMYGIGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE +++ Y PN+ K R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENLFVMTVYTPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER F +L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRLLEAG-FVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R R+DYF+VSE L+++I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLEEQIEDASISADVM------GS 241
Query: 335 DHCPVSLELS 344
DHCPV L ++
Sbjct: 242 DHCPVELMIN 251
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDKEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 64/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L K F ++ + D+ LQE ++
Sbjct: 1 MKLVSWNVNGLRAIQKKG---FDEYLKQSNADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---T 157
+E+++ L+ + Y +WS A+ K Y+GTAL K+ +P V +
Sbjct: 39 ---QEDQISLVT-------EGYHTYWSFAEKKGYSGTALFSKQ--EPVSVQRGIGHPLDN 86
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDL 216
+GR + AEFE FY++ Y PN+ +E R WD+ + +V S KP+I CGDL
Sbjct: 87 EGRTVTAEFEQFYVVCCYTPNS--QEALARLDTRMDWDEAFRSYVCSLASMKPVIICGDL 144
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+ ID+ HP K + G++I ER +F ++L G ID +R+L
Sbjct: 145 NVAHQSIDLRHP---------------KANERNAGYSIEERNQFTSLLDAG-FIDTFRYL 188
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ + WS + RIDY++VSEEL+ I+ + GSDH
Sbjct: 189 YPNREGIYSW-WSYRFKARENNAGWRIDYWLVSEELRQSILDSTIDTET------QGSDH 241
Query: 337 CPVSLELS 344
PV L L+
Sbjct: 242 APVILYLN 249
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 69/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L VK F F D+ +QE ++
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLAFFAETGADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
+E ++ L Y +W+ A+ K Y+GTA+ KK +P V + + +
Sbjct: 39 ---QEGQIAL-------DLDGYYQYWNYAERKGYSGTAVFTKK--EPLSVRYGVGENRTE 86
Query: 158 -DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GR++ E+E FYL+N Y PN+ + + R +W+ R++ ++ K P+I CGD
Sbjct: 87 PEGRILTLEYEDFYLVNVYTPNS--QRDLARLGYRLEWENRMRAYLTDLDKKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ + K + G GFT ER + +L G ID++R+
Sbjct: 145 MNVAHQEIDLKNA---------------KSNIGNSGFTAEERDKMTGLLNSG-FIDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ E+ + ++W + + K R + + RIDYF+VS+ L R ++G G+ E G
Sbjct: 189 FYPER--EGAYTWW-SYMNKVRERNIGWRIDYFLVSKRLAGR-----LKGAGMYPE-IMG 239
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 240 SDHCPVFL 247
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIGEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 141/307 (45%), Gaps = 65/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK+ +F+ D D +QE +M
Sbjct: 1 MKFISWNVNGLRAAVKH---DFAETFQQLDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+E +L L YQ +++ A+ K Y+GTA+ K P V++ + +
Sbjct: 39 ---QEGQLEL-------DLPGYQQYFNYAERKGYSGTAIFTKHA--PMHVTYGINSDEFD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
GR I E+ FYL+ +Y PN+G + F R W+K +++ + K P+I CGD
Sbjct: 87 HEGRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWNKAFYQYLTELDAKKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EI++ +P+ + GFT ER+ F +LK G +D +R
Sbjct: 145 LNVAHKEIELKNPQ---------------SNHHNAGFTDEERQDFTKLLKAG-FMDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ D WS + R RIDYF+ S L D+I ++ L +GSD
Sbjct: 189 FYPDQ-TDIYSWWSYRFHSRDRNAGWRIDYFVASNRLADQIEDSKI------LTDVFGSD 241
Query: 336 HCPVSLE 342
HCPV L+
Sbjct: 242 HCPVELD 248
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 145/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCG 214
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I CG
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKVLELK-KPVIVCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P K + GF+ ER +F +L G ID +R
Sbjct: 144 DLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + K+ + WS + + RIDYF+ S LK R+ + + GS
Sbjct: 188 YFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGS 240
Query: 335 DHCPVSLEL 343
DHCPV LEL
Sbjct: 241 DHCPVGLEL 249
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 142/307 (46%), Gaps = 66/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P +V + +
Sbjct: 51 ---------------------YHVYWNYALKKGYSGTAVFSKQ--EPLQVIYGIGVEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER F L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R RIDYF+VSE LK++I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GS 241
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNNVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 142/310 (45%), Gaps = 66/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P V + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--KPLHVMYGIGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE +++ Y PN+ K R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENLFVMTVYTPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER F L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSEQERGAFTRFLEAG-FVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R R+DYF+VSE LK++I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLKEQIEDASISADVM------GS 241
Query: 335 DHCPVSLELS 344
DHCPV L ++
Sbjct: 242 DHCPVELMIN 251
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 136/309 (44%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L +K +PE D D+ LQE ++ A + D P
Sbjct: 1 MKFISWNVNGLRAVMKKGFPEI---FKELDADIFCLQETKLQAGQIEMDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
Y+ +W+ AD K Y+GTA+ + +P VS+ +
Sbjct: 49 ---------------------GYEQYWNYADKKGYSGTAIFTR--IKPLSVSYGMNIDEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GR+I EFE FY + Y PN+ + E R +W+ + +V + + KP+I+CG
Sbjct: 86 DHEGRLITLEFEDFYFITCYTPNS--QSELARLDYRMRWEDDFRNYVTELNRTKPVIFCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ +P K + GF+ ER + +L G D +R
Sbjct: 144 DLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTELLAAG-FTDTWR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +K+ + WS + RIDYFI S L R+ + GS
Sbjct: 188 YFYPDKEGVYSW-WSYRFKARQNNSGWRIDYFITSSALDSRL------KEALIYTNIEGS 240
Query: 335 DHCPVSLEL 343
DHCPV L +
Sbjct: 241 DHCPVGLVI 249
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 146/308 (47%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L +K + ++ N I + D LQE++M + G D
Sbjct: 1 MRFISWNVNGLRACIKKGFLDYFNEI---NADFFCLQEIKM-SEGQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y+ +++ A K Y+GTA+ K F+P V + +
Sbjct: 47 ------------------LEGYETFYNYAQRKGYSGTAIFTK--FKPLSVKYGMGMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I E++ F+L+ Y PN+ K+E R W+ + ++L + K +I CGD
Sbjct: 87 NEGRLITLEYDDFFLVTCYTPNS--KQELLRLDYRMVWEDAFRNYLLDLNKTKSVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER++ +L G D +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKMSILLDSG-FTDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K+ + + WS + R RIDYF+ S+++ DR++ ++ + GSD
Sbjct: 189 FYPDKENEYSW-WSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIH------QSILGSD 241
Query: 336 HCPVSLEL 343
HCPV LE+
Sbjct: 242 HCPVYLEI 249
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSIDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|348679732|gb|EGZ19548.1| hypothetical protein PHYSODRAFT_408364 [Phytophthora sojae]
Length = 280
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 142/320 (44%), Gaps = 61/320 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWP-EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K V WN N L +K + ++ DPD+ L E
Sbjct: 1 IKIVAWNVNGLRAILKRDESVHLRAYVAQEDPDIFCLSE--------------------- 39
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVK-KCFQPK----------- 148
TK R+E L + P +Q W YA TA+ K K K
Sbjct: 40 TKICRDE---LQKIEDFLPQYEHQYWSCAVKKGYASTAIFSKTKPLSVKDEIIVGDHDSK 96
Query: 149 ---KVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK-RIQEFVLQ 204
K + S + +GR + E+ F+L++TY PN G K E F R +WDK ++E
Sbjct: 97 GVSKSANSGKDQEGRFLALEYPKFWLVHTYVPNAGGKLERLDF-RTNQWDKAMLREMKEM 155
Query: 205 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++WCGDLNV+H+EID+ +P+ NK GFT ER+ FG IL
Sbjct: 156 EKTKPVVWCGDLNVAHQEIDIHNPK------------GNKR---SAGFTDEERESFGNIL 200
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
+ G +D +R LH +K F + N + +G R+DYF+VSE+L +++
Sbjct: 201 ENG-FVDTFRHLHPDKVEYSYFGYRHNMRAQNKG--WRLDYFVVSEKLMPNVVSVFGWER 257
Query: 325 GIELEG-FYGSDHCPVSLEL 343
+ G GSDH P+ LEL
Sbjct: 258 SSYIRGSVVGSDHLPIGLEL 277
>gi|257066091|ref|YP_003152347.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
gi|256797971|gb|ACV28626.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
Length = 274
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 141/331 (42%), Gaps = 87/331 (26%)
Query: 42 LKFVTWNANSL-----------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPA 84
+KF++WN +SL LL +KN +PDVIALQE ++PA
Sbjct: 1 MKFISWNIDSLNAALTSDSKRAVMSRDVLLTIKNE-----------NPDVIALQETKLPA 49
Query: 85 AGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALL 140
G K H E KL S F +Y W A YAGT L
Sbjct: 50 NGPS---KKHVE-----------KL-------SEFFPDYDYVWISSRPGARKSYAGTMTL 88
Query: 141 VKKCFQPKKVSFSLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 195
KK K+ + D GR++ EFE FY Y PN G E R +WD
Sbjct: 89 YKKGLDVKESFPEIGAPDTMDLEGRILTLEFEDFYFTQVYTPNAG--GELKRLPLREEWD 146
Query: 196 KRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 254
K +++ + KP+I GD NV+HEEID++HPE N ++ GFT
Sbjct: 147 KLYADYLAELDKNKPVIATGDFNVAHEEIDLAHPE-------NNHM--------SAGFTD 191
Query: 255 AERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEEL 312
ER+ F +L G D +R H K+++ ++W + K RIDYF+VS+ L
Sbjct: 192 EERRGFTNLLNRG-FTDTFR--HLNKNLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDRL 248
Query: 313 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ +I + G DH P+ LE+
Sbjct: 249 MEDVIDSTIIDSGDR------QDHTPIMLEI 273
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINVEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|373501432|ref|ZP_09591789.1| exodeoxyribonuclease [Prevotella micans F0438]
gi|371949088|gb|EHO66962.1| exodeoxyribonuclease [Prevotella micans F0438]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 142/312 (45%), Gaps = 72/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F TF D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRAVVGKG---FVESFETFGADFFCLQETKM-QAGQLDI----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y+ +W+ A+ K Y+GTA+ K ++P V++ +
Sbjct: 46 -----------------SFPGYESYWNYAEKKGYSGTAIFTK--YKPLSVTYGMNIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCG 214
+GR+I E E F+L+ Y PN+ ++ R +W+ ++ L C KP+I CG
Sbjct: 87 HEGRIITLEMEQFFLVTVYTPNS--QDGLRRLDYRMQWESDFLAYLTSLDCR-KPVIVCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+HEEID+ +P+ N+ + GFT ER++ +L G +D +R
Sbjct: 144 DMNVAHEEIDLKNPQ------------NNRRN---AGFTDEERQKMTTLLASG-FVDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
LH E+ +SW K R K + RIDYF++SE L +++ +
Sbjct: 188 TLHPEEQ---KYSWWSYRF-KAREKNVGWRIDYFLISERLVPQLVEATIHAE------IM 237
Query: 333 GSDHCPVSLELS 344
GSDHCPV L L+
Sbjct: 238 GSDHCPVELVLN 249
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 135/306 (44%), Gaps = 65/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F D D +QE +M
Sbjct: 1 MKFISWNVNGLRAVVKK---DFEAEFEALDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+E +L +L P NY +++ A+ K Y+GT + K +P V + +
Sbjct: 39 ---QENQL----SLDLP---NYHQYYNYAEQKGYSGTGIFTKH--EPLSVHYGINVPELD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GR I E+++F+L+ Y PN+G E R +WD Q ++L+ + KP+I CGD
Sbjct: 87 HEGRTITLEYKSFFLVTCYTPNSG--HELKRLDFRMQWDPAFQSYLLKLNKRKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ P + GFT ER+ F +L G ID YR+
Sbjct: 145 LNVAHSEIDLKSP---------------TSNHHNAGFTDEERENFTTLLDSG-FIDTYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K + WS + RIDYF+ S+ L RI + L GSD
Sbjct: 189 FYPDKKEKYSW-WSYRTKAREVNSGWRIDYFLASKSLAPRISDANI------LTNVMGSD 241
Query: 336 HCPVSL 341
HCPV L
Sbjct: 242 HCPVVL 247
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + VK F +F D D+ +QE +M QE + D
Sbjct: 1 MKFISWNVNGIRACVKKG---FLDFFNETDADIFCIQESKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L+ P + Y W+ A K Y+GT + K+ +P V + L
Sbjct: 45 -------------LNLPEYHQY---WNYAVKKGYSGTGIFTKE--EPISVFYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ +Y + Y PN+ + E R KW++ ++ + KP+I+CGD
Sbjct: 87 QEGRVITLEFKDYYFITVYTPNS--QSELARLSYRMKWEEDFLAYLKKLEEKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+ EEID+ +P K + GFT ER++ IL G ID +R+
Sbjct: 145 LNVAVEEIDLKNP---------------KTNRKNAGFTDEEREKMRTILNNG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ ++ + WS + RIDYFIVSE LKDRI ++ L GSD
Sbjct: 189 LYPDQTGIYSW-WSYRFNARKNNAGWRIDYFIVSECLKDRISDAKI------LTDVMGSD 241
Query: 336 HCPVSLEL 343
HCP+ L+
Sbjct: 242 HCPIELDF 249
>gi|182413315|ref|YP_001818381.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
gi|177840529|gb|ACB74781.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
Length = 253
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 141/312 (45%), Gaps = 70/312 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K F +++ D DVI LQE +K P + Q
Sbjct: 1 MKLVSWNVNGVRAVLKKG---FLDYMGKVDADVICLQE-------TKAHPGDVQH----- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+ A +P W+S Y+GTAL + P KV+F +
Sbjct: 46 --------VAWTAGYTPH------WYSAVKKGYSGTALFTR--VAPLKVNFGIGLPGHDD 89
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGD 215
+GRVI AEF F+L+N Y PN+ + R +WD F+ L+ GKP+++CGD
Sbjct: 90 EGRVITAEFADFFLVNVYQPNSQRGLTRLKY-RTEEWDPAFLAFLKKLEKKGKPVVFCGD 148
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+++P K + GFT ER F +L G +D +R
Sbjct: 149 LNVAHQEIDLTNP---------------KTNRRNAGFTDEERANFSKLLASG-FVDTFRE 192
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELEGF 331
EK WS + R R+DYF+ SE+LK + I+ E+
Sbjct: 193 F--EKGPGHYTWWSQMMNCRARNIGWRVDYFVASEKLKPALKRAWISPEVM--------- 241
Query: 332 YGSDHCPVSLEL 343
GSDHCPV LEL
Sbjct: 242 -GSDHCPVGLEL 252
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 71/316 (22%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 326
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF- 152
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 327 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 363
Query: 153 ---SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 208
S T+GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + + K
Sbjct: 364 TGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSK 422
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P++ GDLN +HEEID+ +P NK GFTI ER+ FGA L +
Sbjct: 423 PVVLTGDLNCAHEEIDIFNP------------AGNKRS---AGFTIEERQSFGANLLDKG 467
Query: 269 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
+D +R K+ G++ W G+ K R+DYF+VS+ IA + I
Sbjct: 468 FVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI- 518
Query: 328 LEGFYGSDHCPVSLEL 343
L GSDHCP+ L L
Sbjct: 519 LPDINGSDHCPIGLIL 534
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 139/309 (44%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK N FS D D LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK--T 157
+W+ A+ K Y+GTA+ K+ + +E+ T
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKEPALSVRYGLGIEEHDT 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GRVI E+ F+L+ Y PN+ + E R W+ ++ + KP+I CGDL
Sbjct: 88 EGRVITLEYPEFFLITCYTPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+ ID+ + K + GFT ER++F +L G D +R+
Sbjct: 146 NVAHKNIDIKNW---------------KTNQKSAGFTPEEREKFSTLLAAG-FTDTFRYF 189
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D + +S WS + RIDYF+VS++L +R++ ++ I GSD
Sbjct: 190 Y--PDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNERLLDAKIHTDII------GSD 241
Query: 336 HCPVSLELS 344
HCPV L+L+
Sbjct: 242 HCPVELDLN 250
>gi|365854004|ref|ZP_09394256.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
gi|363711540|gb|EHL95270.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 140/310 (45%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK +F+ D D ++QE +M + D P HQ
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAATFNKLDADFFSIQETKMQEGQLELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD- 158
+++ A+ K Y+GTAL K+ +P V + ++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTALFAKQ--EPMSVMYGIQSDEF 85
Query: 159 ---GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
GR I E+ FYL+ +Y PN+G + F R WD Q+++ + KP+I CG
Sbjct: 86 DHEGRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWDAAFQDYLSRLDKEKPVILCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+ ID+ +P+ + GFT ER F L G +D++R
Sbjct: 144 DLNVAHKTIDLKNPQ---------------SNHHNAGFTDEERDSFTRFLDMG-FMDSFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
H DM+ +S WS + R RIDYF+ S L +I ++ L YG
Sbjct: 188 --HFYPDMEDIYSWWSYRFHARDRNAGWRIDYFVTSNRLAPKIADSKI------LTDIYG 239
Query: 334 SDHCPVSLEL 343
SDHCPV+L L
Sbjct: 240 SDHCPVALIL 249
>gi|238853021|ref|ZP_04643416.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238834359|gb|EEQ26601.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 275
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 141/321 (43%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRSTGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQP---K 148
E+ + F +Y W A YAGT L K P K
Sbjct: 58 EILAEM------------------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLAPEVTK 99
Query: 149 KVSFSLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 205
V + E D GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 100 PVIAAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLD 157
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+H ID+ HPE + GFT ER+ F +LK
Sbjct: 158 QNKPVIASGDYNVAHTPIDLKHPE---------------SNHHNAGFTDEERQDFDKLLK 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H +++ +SW + K RIDY+IVS + D++ EM
Sbjct: 203 LG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIADQVTKSEMLD 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DHCP+ LE++
Sbjct: 260 TGER------KDHCPIMLEIN 274
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 138/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D+ +QE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFKELDADIFCIQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L P + Y W+ A+ K Y+GTA+ KK +P V + L
Sbjct: 45 -------------LELPHYYQY---WNYAEKKGYSGTAIFTKK--KPLAVRYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE FY++ Y PN+ + + + R WD + ++ Q + KP+I+CGD
Sbjct: 87 QEGRIITLEFEKFYVITCYTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ + +K + GFT ER +F +L G D YR+
Sbjct: 145 LNVAHQEIDLKN---------------DKTNHKNAGFTDEERNKFTQLLNSG-FTDTYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + RIDYF+ S+ L ++ ++ +GSD
Sbjct: 189 FYPSKEGVYSW-WSYRFNARANNAGWRIDYFVSSKALDQKLTDAQIHTE------IFGSD 241
Query: 336 HCPVSLEL 343
HCPV L+L
Sbjct: 242 HCPVELDL 249
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ I FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQNIF-------EFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSHPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 143/312 (45%), Gaps = 74/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ FV+WN N L +K F +F D D+ A+QE ++ +N +L+
Sbjct: 1 MLFVSWNVNGLRACLKKG---FEDFFKDVDADIFAIQETKLQ--------RNQIDLE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F+ Y +++ A K Y+G A+ KK +P V + +
Sbjct: 47 ------------------FEGYTSYYNDAIKKGYSGVAIYTKK--EPMNVIYGMGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR+I EFE FY + Y PN+ K E R+ W+ ++ V + KP++ CGD
Sbjct: 87 QEGRLITLEFEKFYFVAVYTPNS--KRELERLDYRQVWEDAFRQHVQKLKESKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ + +K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLKN---------------DKTNHKNAGFTDQERAKFSELLNSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELEGF 331
+ E +M +S+ K G RIDYF+VSE+LK+ I I E+
Sbjct: 189 KYPETEMYSWWSYMFKAREKNAG--WRIDYFVVSEDLKENIKDAYIYTEIM--------- 237
Query: 332 YGSDHCPVSLEL 343
GSDHCPV +EL
Sbjct: 238 -GSDHCPVGVEL 248
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 143/310 (46%), Gaps = 74/310 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F NF+ PD++ +QE ++ + +L D
Sbjct: 1 MKMISWNVNGIRACLKNG---FMNFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y +W+ A+ K Y+GTA+ K +P +V + + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAVFTK--IKPNEVIYGIGNNEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
GRVI +F+ +YL+N Y PN+ + + R+KWD+ +V K P+I+CGD
Sbjct: 87 GEGRVITLKFDEYYLVNVYTPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+E+D+ +P K + GFT ERK F I+ G +D +R
Sbjct: 145 LNVAHKEVDLKNP---------------KTNVKNAGFTPEERKGFDNIVNSG-FLDTFRE 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELEGF 331
+KE D +S+ N + R RIDYF +SE LKD I E+
Sbjct: 189 FNKEPDNYSWWSYRFN--ARARNIGWRIDYFCISESLRGNLKDAFIMPEIM--------- 237
Query: 332 YGSDHCPVSL 341
GSDHCPV +
Sbjct: 238 -GSDHCPVGI 246
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 71/316 (22%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 267 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 317
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF- 152
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 318 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 354
Query: 153 ---SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 208
S T+GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + + K
Sbjct: 355 TGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSK 413
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P++ GDLN +HEEID+ +P NK GFTI ER+ FGA L +
Sbjct: 414 PVVLTGDLNCAHEEIDIFNP------------AGNKRS---AGFTIEERQSFGANLLDKG 458
Query: 269 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
+D +R K+ G++ W G+ K R+DYF+VS+ IA + I
Sbjct: 459 FVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI- 509
Query: 328 LEGFYGSDHCPVSLEL 343
L GSDHCP+ L L
Sbjct: 510 LPDINGSDHCPIGLIL 525
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 146/310 (47%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K N E+ + D D+IALQE + D
Sbjct: 105 LKISSWNVSGIRAVIKKNGMEY---MLKEDADIIALQETKC----------------DKN 145
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEK--- 156
K E KL N ++ L K Y G AL K+ +P + + L+
Sbjct: 146 KLPEEVKL------------NGYHYYFLESKKPGYCGVALYTKE--KPIDIKYGLDNVEF 191
Query: 157 -TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
++GR+I AE+ FYL+N Y PN G K + +R KW++ + +V KP+I CG
Sbjct: 192 DSEGRLITAEYSNFYLINVYVPNAGQKLI--TLPKRLKWNEAFKAYVKNLDEKKPVIICG 249
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+H++ID+ +P+ NK++ GFT ER L G +D +R
Sbjct: 250 DMNVAHQKIDLKNPD------------TNKKN---AGFTQEERSGMTDFLDAG-FVDTFR 293
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ K+ F WS + + R+DYF+VSE++KD + C+ + + YGS
Sbjct: 294 ALYPNKEGAYTF-WSYFANARSKNIGWRLDYFLVSEQIKDNV--CD----NVIRDKVYGS 346
Query: 335 DHCPVSLELS 344
DHCP+ L ++
Sbjct: 347 DHCPIVLYIN 356
>gi|420148029|ref|ZP_14655302.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
gi|398400376|gb|EJN53933.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
Length = 275
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 143/321 (44%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ A G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRATGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQP---K 148
E+ L+ M F +Y W A YAGT L K P K
Sbjct: 58 EI-----------LVEM-------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 149 KVSFSLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
V + E D GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 100 PVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLD 157
Query: 207 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+H ID+ HPE + GFT ER+ F +LK
Sbjct: 158 QVKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLLK 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H +++ +SW + K RIDY+IVS + +++ EM
Sbjct: 203 LG-FTDTFRKIH--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIANQVTKSEMLD 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DHCP+ LE++
Sbjct: 260 TGER------KDHCPIMLEIN 274
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRISWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 146/312 (46%), Gaps = 69/312 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D DV +QE +M
Sbjct: 1 MKMISWNVNGLRACMTKG---FMDFFNTIDADVFCIQESKMH------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV----SFSLEK 156
R+ S F Y +W+ A+ K Y+GT +L K +P V +
Sbjct: 40 -----------RSQSDFVFDGYYQFWNEAEKKGYSGTIILSKT--EPLSVCNDMGIAHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GR+I+AE+ TF+L+N Y PN+ K E R++W+ + F+ KP+I CGD
Sbjct: 87 KEGRIIVAEYATFFLVNVYTPNS--KRELERLTYRQEWEDDFRSFLKGLEQYKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER++ +L G ID+YR+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSVLLDSG-FIDSYRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ +K+ ++W + +GK R RIDYF++S R +A ++ I E G
Sbjct: 189 FYPDKEH--AYTW-WSYMGKARQNNTGWRIDYFLLS-----RCLAKNLKEAHIYPE-IMG 239
Query: 334 SDHCPVSLELSE 345
SDHCPV + + E
Sbjct: 240 SDHCPVGIVIDE 251
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 147/310 (47%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K N E+ + D D+IALQE + D
Sbjct: 82 LKISSWNVSGIRAVIKKNGMEY---MLKEDADIIALQETKC----------------DKN 122
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEK--- 156
K E KL N ++ L K Y G AL K+ +P + + L+
Sbjct: 123 KLPEEVKL------------NGYHYYFLESKKPGYCGVALYTKE--KPIDIKYGLDNVEF 168
Query: 157 -TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
++GR+I AE+ FYL+N Y PN G K + +R KW++ + +V KP+I CG
Sbjct: 169 DSEGRLITAEYSNFYLVNVYVPNAGQKLI--TLPKRLKWNEAFKAYVKNLDEKKPVIICG 226
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+H++ID+ +P+ NK++ GFT ER L G +D +R
Sbjct: 227 DMNVAHQKIDLKNPD------------TNKKN---AGFTQEERSGMTDFLDAG-FVDTFR 270
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ +K+ F WS + + R+DYF+VSE++KD + C+ + + YGS
Sbjct: 271 ALYPDKEGAYTF-WSYFANARSKNIGWRLDYFLVSEQIKDNV--CD----NVIRDEVYGS 323
Query: 335 DHCPVSLELS 344
DHCP+ L ++
Sbjct: 324 DHCPIVLYIN 333
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|429761671|ref|ZP_19294088.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167711295|gb|EDS21874.1| exodeoxyribonuclease III [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
gi|429183247|gb|EKY24313.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 250
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + VK F +F D D+ +QE +M QE + D
Sbjct: 1 MKFISWNVNGIRACVKKG---FLDFFNETDADIFCIQESKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L+ P + Y W+ A K Y+GT + K+ +P V + L
Sbjct: 45 -------------LNLPGYHQY---WNYAVKKGYSGTGIFTKE--EPISVFYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ +Y + Y PN+ + E R KW++ ++ + KP+I+CGD
Sbjct: 87 QEGRVITLEFKDYYFITVYTPNS--QSELARLSYRMKWEEDFLAYLKKLEEKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+ EEID+ +P K + GFT ER++ IL G ID +R+
Sbjct: 145 LNVAVEEIDLKNP---------------KTNRKNAGFTDEEREKMRTILSNG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ ++ + WS + RIDYFIVSE LKDRI ++ L GSD
Sbjct: 189 LYPDQTGIYSW-WSYRFNARKNNAGWRIDYFIVSECLKDRISDAKI------LTDVMGSD 241
Query: 336 HCPVSLEL 343
HCP+ L+
Sbjct: 242 HCPIELDF 249
>gi|300362953|ref|ZP_07059123.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353003|gb|EFJ68881.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 268
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 151/321 (47%), Gaps = 68/321 (21%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK- 88
E +S+ ++ +KF++WN N L +++ F N T D D+ A+Q+ R+ A +
Sbjct: 3 ELTSKLIERRIIMKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEANEVQI 59
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQP 147
D P +Q +W+ A K YAGTA+ K+ +P
Sbjct: 60 DLPGYYQ------------------------------YWNYAKRKGYAGTAVFTKE--KP 87
Query: 148 KKVS--FSLEKTDG--RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
V+ F + + DG R I EF FY ++ P +G K + F R W + + +V
Sbjct: 88 ITVANGFGVPEVDGEGRSITLEFPNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVT 145
Query: 204 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ KP+I GD++V+HE+ID++ P+ ++ GFT ERK F
Sbjct: 146 KLMQYKPVIIGGDMSVAHEKIDLAEPD---------------DNHRHAGFTGIERKEFSE 190
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+L G ID +R+ H ++ +S+ + K G R+DYF+VS L+D+II ++
Sbjct: 191 LLNAG-FIDTFRYFHPDEAKYTYWSYREDARAKNIG--WRLDYFLVSHNLEDKIINTKI- 246
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
L GSDHCP+ L+L
Sbjct: 247 -----LNNIMGSDHCPIELDL 262
>gi|150388422|ref|YP_001318471.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
gi|149948284|gb|ABR46812.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
Length = 251
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F ++ D D+ +QE ++
Sbjct: 1 MKLVSWNVNGIRACVKKG---FLDYFNEVDADIFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E ++ L + Y+ +W+ A K Y+GTA+ K+ +P V + + ++
Sbjct: 39 ---QEGQIEL-------DLEGYEQYWNYAVKKGYSGTAVFTKE--KPISVKYGVGEEEDE 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRV+ EF+ FYL+N Y PN+ K R W+ + + + KP+I CGD
Sbjct: 87 EEGRVLTLEFDQFYLVNVYTPNS--KRGLERLDGRMIWEDEFRAHLKELDAIKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P+ NK+ GFT ER++ +L G ID++R+
Sbjct: 145 LNVAHEEIDLKNPK------------SNKK---SAGFTNEEREKMTELLTSG-FIDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ D++ +SW + +GK R + RIDYF+VSE LK+++ + G
Sbjct: 189 FY--PDLEGAYSW-WSYMGKARERNAGWRIDYFVVSERLKNQLKEAAIHPQ------IMG 239
Query: 334 SDHCPVSLEL 343
SDHCPV LEL
Sbjct: 240 SDHCPVVLEL 249
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ I FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQNIF-------EFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 138/309 (44%), Gaps = 56/309 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K WN N L +K + +I +PD++ L E ++
Sbjct: 117 IKIACWNVNGLRAVLKR--EDLQKYIKQENPDILCLNETKID------------------ 156
Query: 102 KASREEKLILMRALSSPPFKNYQIW-WSLADSK-YAGTALLVK-KCFQPKK-VSFSLEKT 157
E I + P YQ W + + K Y+G ++ K K KK + + +
Sbjct: 157 ----ESNFIKEKVYKDIPSGYYQYWNFCIPPIKGYSGVSIFSKEKVISIKKGIDIAEHEN 212
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRV+ AEF+ FYL+ Y PN G + + R +DK Q ++ Q K +I CGDL
Sbjct: 213 EGRVLTAEFDKFYLVVVYVPNAGSELVRLDY-RVNSFDKDFQNYLNQLKLKKNVILCGDL 271
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+++P K + PGFTI ER F L+ G ID +RFL
Sbjct: 272 NVAHQEIDIANP---------------KSNRNSPGFTIEERNSFSKFLESG-WIDTFRFL 315
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E +S WS + RIDYF+V++E K I + + YGSD
Sbjct: 316 YPET---IKYSWWSVRTKARESNIGWRIDYFVVNKEFKSSIKDSMINNN------IYGSD 366
Query: 336 HCPVSLELS 344
HCPV L+
Sbjct: 367 HCPVEFILN 375
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 136/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F+ F D D +QE ++ P+
Sbjct: 1 MKFISWNVNGLRACVKKG---FTEFFEQTDADFFCIQETKLQEGQIDFEPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A K Y+GTA+ KK +P V + +
Sbjct: 50 ---------------------YFCYWNYAVKKGYSGTAIFAKK--EPLSVQYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E+E FY++ Y PN+ + E R +W+ + ++ Q KP+I CGD
Sbjct: 87 QEGRVITLEYENFYMVTVYTPNS--QSELARLSYRMQWEDDFRAYLQQLDEKKPVIMCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER++F L G D +R+
Sbjct: 145 LNVAHQEIDLKNP---------------KTNRHNAGFTDEEREKFTTFLDAG-FTDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K + WS + + RIDYF S+ L +++++ + +GSD
Sbjct: 189 FYPDKTEIYSW-WSYRFKAREKNAGWRIDYFCTSKRLDEKLLSASIH------TDIFGSD 241
Query: 336 HCPVSLEL 343
HCPV +++
Sbjct: 242 HCPVEVQI 249
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L VK F ++ D D+ +QE +
Sbjct: 1 MKLVSWNVNGLRACVKKG---FLDYFQEVDADIFCVQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L S Y +W+ A K Y+GTA+ K +P V + + +
Sbjct: 38 ---------LQEGQISLDLDGYHQYWNYAIKKGYSGTAVFTK--IEPISVRYGVGTDESE 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GR++ EF+ F+L+N Y PN+ + + R +W+ RI E + + KP+I CGD
Sbjct: 87 EEGRILTLEFDDFFLVNIYTPNS--QRDLARIGYRLEWESRILEHLKELDKLKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ + +K + G GFT ER + ++L G +D+YR
Sbjct: 145 LNVAHQEIDLRN---------------SKSNVGNSGFTDEERGKMTSLLSAG-FVDSYR- 187
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
H D + ++W + + K R + + RIDYFIVSE+L++ + + ++ + + G
Sbjct: 188 -HFYPDQEGAYTW-WSYMMKVRERNIGWRIDYFIVSEKLRENLKSADIHCNVM------G 239
Query: 334 SDHCPVSLEL 343
SDHCP+ LE+
Sbjct: 240 SDHCPIVLEV 249
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 145/314 (46%), Gaps = 77/314 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLTVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K++ R W+ ++++ K ++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDKLLRLDYRMTWEDEFRKYLKNLEKKKAVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELE 329
+ +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 189 FY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-- 238
Query: 330 GFYGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 ---GSDHCPVVLIL 249
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 147/312 (47%), Gaps = 58/312 (18%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ +K ++WN N L +K + DV+ LQE ++ A SKD Q L D
Sbjct: 165 NSVKLMSWNVNGLRALLKFEGFSALELAQRENFDVLCLQETKLQA--SKDVDSIKQCLID 222
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSL--- 154
+ S +W+ +++K Y+GTA++ + +P V + L
Sbjct: 223 GYENS---------------------FWTCSNAKLGYSGTAIVSR--IKPLSVCYGLGIP 259
Query: 155 -EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 212
++GRV+ AEF++FYL+NTY PN+G + S+ R +WD + ++ + KP+I
Sbjct: 260 DHDSEGRVVTAEFDSFYLVNTYVPNSGDGLKRLSY-RITQWDPSLSNYMKELEKSKPVIL 318
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
GDLN +H+EID+ +P NK GFT ER+ FG+ L+D
Sbjct: 319 TGDLNCAHQEIDIFNP------------AGNKR---SAGFTEEERQSFGSNFLSKGLVDT 363
Query: 273 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R H G++ W G+ K R+DYF+VSE + D++ + +
Sbjct: 364 FRKQHPNV---VGYTYWGYRHGGRKTNKGWRLDYFLVSESIADKVHDSYI------VPDV 414
Query: 332 YGSDHCPVSLEL 343
GSDHCP+ L L
Sbjct: 415 NGSDHCPIGLVL 426
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRISYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKERAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|325846697|ref|ZP_08169612.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481455|gb|EGC84496.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 275
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 143/319 (44%), Gaps = 63/319 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N + S + I D D+I LQE ++P G
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTG--------- 51
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
S++ K IL S P NY W S A YAG KK F+P
Sbjct: 52 -------PSKKHKQILE---SYFPQYNYA-WISSQEPARKSYAGCLTFYKKEFEPIISYP 100
Query: 153 SLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 206
+L+ D R+I EF+ FYL Y PN G + R+ WDK+ ++ +
Sbjct: 101 TLDAPDTMDQEARIITLEFDNFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLDQ 158
Query: 207 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
KP+I CGD NV+H+EID+ HPE + GFT ER F +L +
Sbjct: 159 NKPVIACGDFNVAHKEIDLKHPE---------------NNHKSAGFTDEERSGFTNLLNK 203
Query: 267 GRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
G +D +R+LH D++ ++W + K RIDYFIVS+ +K++I +M
Sbjct: 204 G-FVDTFRYLH--GDVEGKYTWWAQRVKTSKINNSGWRIDYFIVSDRIKEKIKESDMIDS 260
Query: 325 GIELEGFYGSDHCPVSLEL 343
G DH P+ + +
Sbjct: 261 GDR------QDHTPIYINI 273
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 141/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + N F + D D LQE ++ A + EL D
Sbjct: 1 MKFISWNVNGLRAVMGKN---FMEAFGSLDADFFCLQETKLQAG------QIQMELPD-- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A+ K Y+GTA+ K +P S+ +
Sbjct: 50 ---------------------YHQFWNYAEKKGYSGTAVFTKH--EPISASYGIGIAEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI E+E F+L+ Y PN+ ++E + R KW+ + ++ + K +I CGD
Sbjct: 87 TEGRVITLEYEKFFLVTVYTPNS--QDELRRLEYRMKWEDDFRAYLKTLALKKGVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ +P K + GFT ER + +L G D++R
Sbjct: 145 MNVAHEEIDIKNP---------------KTNRRNAGFTDEERGKMTELLSSG-FTDSFR- 187
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D +S WS + + RIDYF+VS+ +KD+ M G I E GS
Sbjct: 188 -HFYPDTAGVYSWWSYRFHAREKNTGWRIDYFLVSDSIKDK-----MTGAKIHTE-ILGS 240
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 241 DHCPVELDM 249
>gi|406931444|gb|EKD66730.1| hypothetical protein ACD_49C00017G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 148/308 (48%), Gaps = 61/308 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +++N N + ++ F +++ + +PD+I LQEV+ A +N +K D
Sbjct: 1 MKLISFNVNGIRSNIQKG---FLDYLISENPDIIGLQEVK--------AQENELPIKIDL 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y+I+W+ A+ K Y+GTA+ K +P VS+ L
Sbjct: 50 ASLW-----------------YEIYWNSANKKWYSGTAIFTK--IKPLSVSYWLWLAEHD 90
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+ R+I EFE FY +N Y PN K E R+ WD +++ + KP+I C D
Sbjct: 91 EEWRIITLEFENFYFVNVYTPNA--KRELERLDYRQLWDSLFLDYLKRLEQNKPVITCWD 148
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
NV+H+EID+++P+ K N GFT ER+ F + G ID +R+
Sbjct: 149 FNVAHQEIDLTNPK---TNKWNA------------GFTPEEREWFSKFISSG-FIDTFRY 192
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K + + WS + R RIDYF++S LK+++ + ++ + SD
Sbjct: 193 FYPDKTWEYSW-WSNFANSRARNIGWRIDYFLISNTLKNKLKSAFIK------QEVRWSD 245
Query: 336 HCPVSLEL 343
HCPV +E+
Sbjct: 246 HCPVGIEI 253
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 142/307 (46%), Gaps = 62/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N R + +++ D + +QE ++ HQ+
Sbjct: 1 MKFISWNVNGF--RALQRKMDVFSWLKETGADALCIQETKL-----------HQD----- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+ +P + +Q W Y+GTA+ K +P +V++ +
Sbjct: 43 ----------QVQIDTPGY--HQFWNDAVRKGYSGTAIFTKN--KPLRVTYGMGIEVHDQ 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GR+I E+E +YL+ Y PN K + R +W +++ + KP+I+CGDL
Sbjct: 89 EGRLITLEYEDYYLVTVYTPNA--KRDLTRLAYRLEWGAAFTDYMKRLDEKKPVIFCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+ ID+++P K + G GFTI ER+ F A+L G +D++R L
Sbjct: 147 NVAHQAIDLTYP---------------KNNKGNSGFTIEEREDFTALLNNG-FVDSFRHL 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ E+ D WS + R RIDYF++S+ L I ++ L YGSDH
Sbjct: 191 YPER-TDAYSWWSFLFNARERNIGWRIDYFVLSKCLSSSIRDAKL------LTEIYGSDH 243
Query: 337 CPVSLEL 343
CPV L+L
Sbjct: 244 CPVELDL 250
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVITFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFSKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|205373614|ref|ZP_03226417.1| exodeoxyribonuclease [Bacillus coahuilensis m4-4]
Length = 195
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 116/216 (53%), Gaps = 31/216 (14%)
Query: 134 YAGTALLVKKCFQPKKVSFSLEK---TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 190
Y+GTA+ K +P KV++ +++ ++GR+I EF FY++ Y PN+ K + + +
Sbjct: 7 YSGTAIFTKS--KPLKVTYGMDEERNSEGRMITLEFSDFYVVTMYTPNS--KRDLSRLEE 62
Query: 191 RRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 249
R +W+ +Q ++ + + K P+I+CGDLNV+H E+DV + ++ + G
Sbjct: 63 RLEWEDLVQGYLDKLNQKKPVIFCGDLNVAHTELDVKN---------------DRANQGN 107
Query: 250 PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVS 309
GFT ER++ +L G D YR+ + +D D WS + R RIDYFIVS
Sbjct: 108 SGFTQVEREKMNGLLDLG-FTDTYRYFNPARD-DQFTWWSYMKGVRERNIGWRIDYFIVS 165
Query: 310 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 345
+ I ++ H YGSDHCP+ LELS+
Sbjct: 166 TSFMNTISNSDIHDH------VYGSDHCPIVLELSK 195
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFELFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKMRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 143/307 (46%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINMEHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGD 215
+GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ CGD
Sbjct: 87 KEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYF+VS L+DRI + + GS
Sbjct: 189 FN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEIL------GS 240
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 241 DHCPVKL 247
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|399215902|emb|CCF72590.1| unnamed protein product [Babesia microti strain RI]
Length = 459
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 161/362 (44%), Gaps = 71/362 (19%)
Query: 37 SKKDPLKFVTWNANSL--LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-------- 86
S+ DP K + W+ + + + + W +F + +P ++ LQ V++ A+
Sbjct: 106 SEDDPKKIMVWDISGMHDMNKKSKAWNQFLALVNENNPCILILQNVKLCASKFTGICAKI 165
Query: 87 ------SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL 140
P QEL+D + + L FK Y++ SLA + G +L
Sbjct: 166 PSKYNEGTIPPTYEQELEDGS---------FIDNLMKTSFKKYKVIHSLASWRVRGQMIL 216
Query: 141 VKKCFQ--------PKKVSFSL--------EKTDGRVILAEFETFYLLNTYAPNNGWKEE 184
+KK F PK++ ++L +GRV++ EF++FYL++ P NGW E
Sbjct: 217 LKKSFTVSNSTFILPKRIRYNLNIKQNAKYHNHEGRVVIIEFDSFYLMSLITPGNGWITE 276
Query: 185 ENSFQRRRKWDKRIQEFVLQCSG--KPLIWCGDLNVSHEEIDVSHPEFFAAAKL-NGYVP 241
S ++R+KWD + F L+ S K +I G+LN S E+IDVS+P AA KL V
Sbjct: 277 --SIKQRKKWDLELTTF-LKASKYIKAVIMVGNLNCSPEDIDVSNP---AALKLEKTAVL 330
Query: 242 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH------KEKDMDCGFSWSGNPIGK 295
+E G PG +R F LK G L D YRF++ E D + S + NP
Sbjct: 331 HEEEQHGYPGTREVDRNGFEETLKAGDLWDVYRFMNPVEVEESESDSNALASTAKNPKYT 390
Query: 296 YRGK--------------RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 341
G +R ++S + I +CE+ G +L+ F G H PV L
Sbjct: 391 SIGTGAIYLVQTGDKCKCAVRTTLALMSTKFLRNIKSCEILGTMADLKPF-GWRHLPVGL 449
Query: 342 EL 343
L
Sbjct: 450 TL 451
>gi|257789897|ref|YP_003180503.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|317489355|ref|ZP_07947868.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325832619|ref|ZP_08165417.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
gi|257473794|gb|ACV54114.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|316911526|gb|EFV33122.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325485940|gb|EGC88400.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
Length = 285
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 149/346 (43%), Gaps = 107/346 (30%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + + D D++ALQE ++ +
Sbjct: 1 MRFVSWNVNGLRAVLKKG---FEDIVCELDADIVALQETKLQEGQA-------------- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKK----VSFSLEK 156
L P ++ Y WS A+ K Y+GTA+ K+ QP + + F
Sbjct: 44 ------------TLDLPQYREY---WSYAEKKGYSGTAIFCKE--QPLQALHGLGFPHLD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--------- 207
T+GR++ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 87 TEGRIVALEFPKFWFVDVYTPNA--QNELARIDHRMEWDDAFRDF---CKGLEEGVLPAG 141
Query: 208 -----------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 238
KP++ CGD NV+H+EID+ +P
Sbjct: 142 VPVERPALGEGHVAISELPLTQPGETADPKPVVMCGDFNVAHQEIDLKNPG--------- 192
Query: 239 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYR 297
PN+ G+ GF+ ER +F +L+ G +D++R LH D+ +S WS +
Sbjct: 193 ---PNR---GKAGFSDEERGKFTDLLEVG-FVDSFRHLH--PDVTGAYSWWSYRFKARQT 243
Query: 298 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
RIDYF+VS+EL +I + + + YGSDHCPV +EL
Sbjct: 244 NAGWRIDYFLVSDELAPKIQSACI------YDEVYGSDHCPVGIEL 283
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 136/309 (44%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F N D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRAVVG---KDFENTFKALDADFFCLQETKM-QAGQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y +W+ AD K Y+GTA+ + +P VS+ +
Sbjct: 47 ------------------FDGYDSFWNYADKKGYSGTAIYTRH--KPLNVSYGIGIDQHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRVI E TF+L+ Y PN+ +EE R +W+ Q ++ KP+I CGD
Sbjct: 87 HEGRVITLEMPTFFLVTVYTPNS--QEELRRLDYRMQWEDDFQAYLHNLDKCKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER++ +L G D +R+
Sbjct: 145 MNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLDAG-FTDTFRW 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E + +S WS + R RIDYF+VS L+ ++ ++ GS
Sbjct: 189 KYPE---EVTYSWWSYRFKARERNTGWRIDYFLVSNRLQAEVLDAKIH------TDILGS 239
Query: 335 DHCPVSLEL 343
DHCPV L L
Sbjct: 240 DHCPVELLL 248
>gi|116628715|ref|YP_813887.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282852356|ref|ZP_06261698.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311111551|ref|ZP_07712948.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|116094297|gb|ABJ59449.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282556098|gb|EFB61718.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311066705|gb|EFQ47045.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 275
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 141/321 (43%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRSTGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQP---K 148
E+ + F +Y W A YAGT L K P K
Sbjct: 58 EILAEM------------------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLAPEVTK 99
Query: 149 KVSFSLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 205
V + E D GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 100 PVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLD 157
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+H ID+ HPE + GFT ER+ F +LK
Sbjct: 158 QNKPVIASGDYNVAHTPIDLKHPE---------------SNHHNAGFTDEERQDFDKLLK 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H +++ +SW + K RIDY+IVS + D++ EM
Sbjct: 203 LG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIADQVTKSEMLD 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DHCP+ LE++
Sbjct: 260 TGER------KDHCPIMLEIN 274
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 145/312 (46%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +++N N L V N+ E +F D D LQE +M A G D
Sbjct: 1 MKCISFNVNGLRAIVGKNFEE--DF-KKLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y +++ A+ K Y+GTA+ K ++P V++ +
Sbjct: 47 ------------------FDGYYSYFNYAERKGYSGTAIYTK--YKPLNVTYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI E++ F+ + Y PN+G E + R W+ ++++L + K +I CGD
Sbjct: 87 TEGRVITLEYDNFFFITVYTPNSG--SELKRLEYRMSWEDDFKDYLLTLNKDKGVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER++F +L G ID +R+
Sbjct: 145 LNVAHTEIDLKNP---------------KTNVKNAGFTPEEREKFTKLLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + RIDYF+VS++LK +++ ++ +GS
Sbjct: 189 FN--PDLTGAYSWWSYRFNARKNNSGWRIDYFLVSKDLKKYLVSAKIHND------IFGS 240
Query: 335 DHCPVSLELSEA 346
DHCPV L L E
Sbjct: 241 DHCPVELVLDET 252
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 137/309 (44%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ + G D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SEGQLDLD---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 47 ------------------LKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ K P++ CGD
Sbjct: 87 KEGRVITLEFEKFYMITVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G D +R
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLAAG-FTDTFR- 187
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +S WS + RIDYF+VS L ++ E+ GS
Sbjct: 188 -HFYPDLEHAYSWWSYRANARKNNTGWRIDYFVVSNALDKYLVDAEIHAQT------EGS 240
Query: 335 DHCPVSLEL 343
DHCPV L L
Sbjct: 241 DHCPVVLFL 249
>gi|259503288|ref|ZP_05746190.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
gi|259168743|gb|EEW53238.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
Length = 275
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 143/325 (44%), Gaps = 75/325 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAP-KNH 94
+KF++WN +S+ + + +PD +A+QE ++ SK+ P K H
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRAVLKKLAALEPDAVAIQETKL----SKNGPTKKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
++ D F YQ+ W A YAGT L ++ +QP +
Sbjct: 57 LQVLADL------------------FPGYQVAWRSSVEPARKGYAGTMYLYREQYQPT-I 97
Query: 151 SFSL------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 201
S+ ++GR+I EF F+L Y PN+G N +R R +WD +++
Sbjct: 98 SYPQIGAPEPMDSEGRIITLEFPDFFLTEVYTPNSG-----NGLKRLAEREQWDDCYRDY 152
Query: 202 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 260
+ + KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 153 LHELDQQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEERTHF 197
Query: 261 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 318
G +L G D++RFLH D +SW + K RIDY+++S+ L DR+ +
Sbjct: 198 GKLLDAG-FTDSFRFLH--PDQAGAYSWWAQRVLTSKQNNSGWRIDYWLISDRLADRVSS 254
Query: 319 CEMQGHGIELEGFYGSDHCPVSLEL 343
M G DH P+ LE+
Sbjct: 255 STMIDSGER------RDHTPIMLEI 273
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 139/310 (44%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + ++ ++I DVI LQE +K P + Q +
Sbjct: 1 MKLVSWNVNGVRAVLQKG---LLDYIAASGADVICLQE-------TKCQPGDVQHVVWPA 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y+ WW+ A K Y+GTA+ + +P VS L D
Sbjct: 51 --------------------GYRAWWNAAQKKGYSGTAIFSR--VEPVAVSCGLGLPDHD 88
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
GRV+ AEF FYL+N Y PN + E RR+W+ ++ K P++ CGD
Sbjct: 89 NEGRVLTAEFADFYLVNVYVPNA--QHELVRLPYRRRWNADFLSYLRSLEKKKPVVVCGD 146
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID++ P KE+ G GF+ ER+ F +L+ G +D +R
Sbjct: 147 MNVAHQEIDLARP---------------KENVGNAGFSNEEREDFSTMLRAG-FVDTFRE 190
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
K +SW G RG+ + RIDYF+ S L+ R+ ++ G
Sbjct: 191 FEKGPGH---YSWWTYRAGA-RGRNIGWRIDYFLASAALRPRLKRAWIE------PTVMG 240
Query: 334 SDHCPVSLEL 343
SDHCPV LEL
Sbjct: 241 SDHCPVGLEL 250
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 148/312 (47%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N + K ++ F +F PDV+ LQE T
Sbjct: 1 MRLVSWNVNGIRAVTKKDF--FESF-ERMAPDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
KA ++ L + L Y+++ + A+ K Y+GTA++ + +P V+ +
Sbjct: 37 KAQDDQVLEALTELDPA----YKVFSNSAEKKGYSGTAIITR--VEPISVTADMGMPEHD 90
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
T+GRV+ AEFETFYL+ Y PN+G E R+ WDK +++ KP++ CGD
Sbjct: 91 TEGRVLCAEFETFYLVTVYTPNSG--SELKRLDYRQSWDKDFADYLKTLEQTKPVVVCGD 148
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDAYR 274
LNV+H++ID++ P K+++ + G+ AE F ++ G +D YR
Sbjct: 149 LNVAHQDIDLARP---------------KQNYNKSAGYMQAEIDGFDRLVDLG-FVDTYR 192
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+ +SW G R K + RIDYF+V+ EL + E+ Y
Sbjct: 193 HFNPNT---AKYSWWSYRAGA-REKNIGWRIDYFLVTPELTSSLTGAEI------YNDVY 242
Query: 333 GSDHCPVSLELS 344
GSDHCPV +++S
Sbjct: 243 GSDHCPVGIDIS 254
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQE---------------------S 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K +E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 37 KIQQEQ--------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACCEKG---FKESFAALDADFFCLQETKM------------QEGQLDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ F+ Y+ +W+ A+ K Y+GTA+ + P V++ L
Sbjct: 46 E-----------------FEGYRSYWNYAEKKGYSGTAIFSRHA--PLNVTYGLGLEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E F+L+ Y PN+ ++ R +W++ + ++LQ + KP+I CGD
Sbjct: 87 REGRVITLEMPDFFLVTVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER++FG +L G D +RF
Sbjct: 145 LNVAHREIDLKNP---------------KSNRKNAGFTDEEREKFGILLDSG-FTDTFRF 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +++ + WS + + RIDYF+VS+ L+ +++ I E F GSD
Sbjct: 189 FYPDREGIYSW-WSYRFKAREKNAGWRIDYFLVSKRLE-----AQLKSATIHTEIF-GSD 241
Query: 336 HCPVSLEL 343
HCPV ++L
Sbjct: 242 HCPVEVDL 249
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKNILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACCEKG---FKESFAALDADFFCLQETKM------------QEGQLDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ F+ Y+ +W+ A+ K Y+GTA+ + P V++ L
Sbjct: 46 E-----------------FEGYRSYWNYAEKKGYSGTAIFSRHA--PLNVTYGLGLEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E F+L+ Y PN+ ++ R +W++ + ++LQ + KP+I CGD
Sbjct: 87 KEGRVITLEMPDFFLVTVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER++FG +L G D +RF
Sbjct: 145 LNVAHREIDLKNP---------------KSNRKNAGFTDEEREKFGILLDSG-FTDTFRF 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +++ + WS + + RIDYF+VS+ L+ +++ I E F GSD
Sbjct: 189 FYPDREGIYSW-WSYRFKAREKNAGWRIDYFLVSKRLE-----AQLKSATIHTEIF-GSD 241
Query: 336 HCPVSLEL 343
HCPV ++L
Sbjct: 242 HCPVEVDL 249
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|311110171|ref|ZP_07711568.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|311065325|gb|EFQ45665.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 265
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 149/319 (46%), Gaps = 68/319 (21%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDA 90
+SE ++ +KF++WN N L +++ F N T D D+ A+Q+ R+ P D
Sbjct: 2 TSELIERRIIMKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEPNEVQIDL 58
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKK 149
P +Q +W+ A K YAGTA+ K+ +P
Sbjct: 59 PGYYQ------------------------------YWNYAKRKGYAGTAVFTKE--KPIT 86
Query: 150 VS--FSLEKTDG--RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
V+ F + + DG R I EF FY ++ P +G K + F R W + + +V +
Sbjct: 87 VANGFGVPEVDGEGRSITLEFSNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKL 144
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP+I GD++V+H++ID++ P+ ++ GFT ERK F +L
Sbjct: 145 MQYKPVIIGGDMSVAHDKIDLAEPD---------------DNHRHAGFTGIERKEFSELL 189
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
G ID +R+ H ++ +S+ + K G R+DYF+VS L+D++I ++
Sbjct: 190 NAG-FIDTFRYFHPDEAKYTYWSYREDARAKNIG--WRLDYFLVSNNLEDKMINAQI--- 243
Query: 325 GIELEGFYGSDHCPVSLEL 343
L GSDHCP+ L+L
Sbjct: 244 ---LNNIMGSDHCPIELDL 259
>gi|363896773|ref|ZP_09323322.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
gi|361960338|gb|EHL13587.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
Length = 251
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 140/307 (45%), Gaps = 66/307 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + N F D D+ LQE ++ A +
Sbjct: 3 KLISWNVNGLRAVMGKN---FMEDFRKLDADIFCLQETKLQAGQIE-------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKTD 158
L P + +Q W Y+GTA+ K+ +P VS+ + +
Sbjct: 46 ------------LDLPGY--FQYWNYAVKKGYSGTAIFTKE--EPLSVSYGIGVEEHDQE 89
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLN 217
GRVI AEF+ FYL+ Y PN+ + E R +++ ++L K P+++CGDLN
Sbjct: 90 GRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEFEDAFLNYILNLEKKKPVVYCGDLN 147
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+HEEID+ +P+ + GF+ ER +F +L G L D++R+ +
Sbjct: 148 VAHEEIDLKNPD---------------TNHLSAGFSDEERAKFSRVLDNGYL-DSFRYFY 191
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
EK+ +S WS + R RIDYF+VS++L+ ++ + + + GSDH
Sbjct: 192 PEKE---EYSWWSYRTKARERNVGWRIDYFVVSKQLEKKLHSASIHTEVM------GSDH 242
Query: 337 CPVSLEL 343
CPV L L
Sbjct: 243 CPVELIL 249
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE+FYL+N Y PN+ ++ + R W+ + F+ KP+I CGD
Sbjct: 87 KEGRIITCEFESFYLVNIYTPNS--QQALSRLNYRMSWEVEFRRFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNTG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNSLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRIITCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D D+ +QE +M H +
Sbjct: 1 MKLISWNVNGLRACLSKG---FEDFFNTADADIFCIQETKM-----------HPD----- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
E LI Y+ +W+ A K Y+GTA+ + P V++ L
Sbjct: 42 --QAEIGLI-----------GYEKYWNSAVKKGYSGTAVFTR--IAPLSVTYGLNIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GR+I EFE F+L+N Y PN+ K E R +W+ + ++ KP+I CGD
Sbjct: 87 QEGRIITLEFEDFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLTALDQSKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER + A+L+ G D +R
Sbjct: 145 INVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLEAG-FTDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
++ +K +D WS + R RIDYF+VS L++ I + + GSD
Sbjct: 189 IYPDK-IDAYTWWSYMMNARARNIGWRIDYFLVSNALREAIKEATIYPDVM------GSD 241
Query: 336 HCPVSLEL 343
HCP+ LE+
Sbjct: 242 HCPIGLEI 249
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 144/311 (46%), Gaps = 69/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFETVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
R ++ F NY+ +W+ A+ K Y+G A+ K +P V++ +
Sbjct: 39 ----------QREQATFDFPNYEEYWNSAEKKGYSGVAIFSKT--KPLSVAYDMGIAHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I AE++ FYL+N Y PN+ K E R +W+ + ++ KP+I CGD
Sbjct: 87 KEGRIICAEYKDFYLVNVYTPNS--KRELERLSYRMEWEDDFRAYLKNLEKTKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER++ +L G D +R
Sbjct: 145 LNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FTDTFR- 187
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
H ++ +SW + +GK R RIDYF+ S+ L +++ ++ +G
Sbjct: 188 -HFYPTLEGAYSW-WSYMGKARENNTGWRIDYFLCSKALDSKLLDAKIYPE------VFG 239
Query: 334 SDHCPVSLELS 344
SDHCPV LE++
Sbjct: 240 SDHCPVGLEIN 250
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK + + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTHL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 137/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ----------QQDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|406897912|gb|EKD41704.1| hypothetical protein ACD_73C00569G0001 [uncultured bacterium]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 135/305 (44%), Gaps = 63/305 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F +F+ + D+I LQE K H E D T
Sbjct: 1 MKMISWNVNGIRSILGKG---FLDFVGSSCADIICLQET-----------KAHPEQVDLT 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--G 159
L+ P + W S Y+GTA+ K ++ +E+ D G
Sbjct: 47 -------------LNDYP---HHYWNSAIKKGYSGTAIFCKVQPIASQLGIGIEEHDNEG 90
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 218
RVI EF +YL+N Y PN + E R KWD ++ + S KP+I+CGDLNV
Sbjct: 91 RVITLEFSDYYLVNVYTPNA--QRELTRLDYRMKWDADFLNYLKKLESHKPVIFCGDLNV 148
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+++P K + G GFT ER F IL+ G +D +R +
Sbjct: 149 AHKEIDLANP---------------KTNQGNAGFTPQERDGFSKILESG-FVDTFRLFNN 192
Query: 279 EKDMDCGFS--WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
GF WS + R RIDYF S LK+++ + + + GSDH
Sbjct: 193 SG----GFYTWWSYMAGARPRNIGWRIDYFCTSYNLKNKVKSSAIHAQVM------GSDH 242
Query: 337 CPVSL 341
CPV L
Sbjct: 243 CPVEL 247
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 139/307 (45%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N + + F + D D+ LQE + + + P HQ
Sbjct: 1 MKCISWNVNGIRACITKG---FEDRFRELDADIFCLQETKCQQGQVELELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD- 158
+W+ A+ + Y+GTA+ KK K +E+ D
Sbjct: 53 -------------------------YWNYANRRGYSGTAVFTKKEPISVKNGIGIEEHDK 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
GRVI EF+ FY + Y PN+ + E + R +W++ ++L+ KP+I CGDL
Sbjct: 88 EGRVITLEFKEFYFVTVYTPNS--QSELRRLEYRMEWERDFLAYLLKLQESKPVICCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ +P K + GFT ER F +L+ G ID +R+
Sbjct: 146 NVAHEEIDLKNP---------------KTNRKNAGFTDEERACFTKVLESG-FIDTFRYF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K+ + WS + + RIDYFI S LK++ +QG I E GSDH
Sbjct: 190 YPDKEGIYSW-WSYRFKAREKNAGWRIDYFITSPSLKEK-----LQGAAIHTE-IMGSDH 242
Query: 337 CPVSLEL 343
CP+ L++
Sbjct: 243 CPIELDI 249
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 139/309 (44%), Gaps = 63/309 (20%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
++ +K VTWN N L + F + D D+I++QE
Sbjct: 5 RNLMKLVTWNVNGLRACMNKG---FKESMEKLDADIISIQE------------------- 42
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL---- 154
TK RE+ + P + Y+ W S Y+GTA+ + +P V++ L
Sbjct: 43 --TKMQREQA-----SFDFPGY--YEYWNSAVKKGYSGTAIFSR--IKPLSVTYGLGIEE 91
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
+GRVI AE++ FYL+N Y PN+ + E R W+ Q + S K I C
Sbjct: 92 HDQEGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAWEDAFQAYCEDLSKKKTTIVC 149
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GD+NV+HE ID+ +P+ + GF+ ER++ A L G +D++
Sbjct: 150 GDMNVAHEPIDLKNPD---------------SNHHNAGFSDEERQKLDAFLARG-FVDSF 193
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R L+ +++ + WS + R RIDYF+VSE +D+I + + G
Sbjct: 194 RMLYPDREGAYTW-WSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTI------MNEIMG 246
Query: 334 SDHCPVSLE 342
SDHCPV LE
Sbjct: 247 SDHCPVVLE 255
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 152/309 (49%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK + E+ + + + D+ +QE ++
Sbjct: 1 MKLISWNVNGIRACVKKGFLEYFDEV---EADIFCIQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+E ++ LM +Y+ +W+ A+ K Y+GTA+ K +P V++ ++
Sbjct: 39 ---QEGQIDLM-------LNDYEQYWNYAEKKGYSGTAVFTK--IKPISVAYGIDIEHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI E++ FYL+N Y PN + + + R +W+ + ++ KP+I CGD
Sbjct: 87 TEGRVITLEYDNFYLVNVYTPNA--QPKLARLEYRMQWEDDFRRYLNDLDEKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + PGF+ ER +F +L G ID++RF
Sbjct: 145 LNVAHNEIDLKNP---------------KSNRKNPGFSDEERGKFTNLLDSG-FIDSFRF 188
Query: 276 LHKE-KDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +M +S+ N + RIDYF VS +LK+ E++ I ++ GS
Sbjct: 189 FYPDATEMYTWWSYRFN--ARENNAGWRIDYFCVSNKLKN-----ELKNAEIHMD-ILGS 240
Query: 335 DHCPVSLEL 343
DHCPV LE+
Sbjct: 241 DHCPVVLEI 249
>gi|427393372|ref|ZP_18887150.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
gi|425730590|gb|EKU93424.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
Length = 275
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 142/321 (44%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + S I + PDV+A+QE ++ A G K H
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAQMSRQVLETIQDYQPDVLAIQETKLSAKGPT---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
A R E+ F +Y W A YAG + KK P+
Sbjct: 57 -------AKRLEEW----------FPDYDYAWVSSVEPARKGYAGNMVFYKKDLSPEVTY 99
Query: 152 FSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 205
++ ++GR+I EF+ FY Y PN G + R++WDK+ ++
Sbjct: 100 PRIDAPEPMDSEGRMITLEFDNFYFTQVYTPNAG--SQLARLGERQEWDKQYANYLTSLD 157
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
+ KP+I GD NV+H+EID++HPE + GFT ER+ F +L
Sbjct: 158 AAKPVIAAGDFNVAHQEIDLAHPE---------------NNHHSAGFTDEEREGFSHLLS 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D++R H D++ +SW + K RIDYF+ S+ L D++ EM
Sbjct: 203 RG-FTDSFR--HVNGDVEGVYSWWAQRVKTSKENNSGWRIDYFLTSDRLSDQVEKSEMVD 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DH P+ LE++
Sbjct: 260 SGPR------QDHTPIYLEIN 274
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSINADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|406882207|gb|EKD30059.1| hypothetical protein ACD_78C00169G0004 [uncultured bacterium (gcode
4)]
Length = 267
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 146/308 (47%), Gaps = 61/308 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F ++ T +PD+I LQEV+
Sbjct: 13 MKAVSWNVNGVRSVLTKG---FLEYLATENPDIIGLQEVK-------------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ EE+ L S Y I+W+ A+ K Y+GTA+ K +P V + L
Sbjct: 50 --ATEEQFPAGFDLQS---MGYHIYWNAAERKGYSGTAVFSK--VEPISVRYGLGMKEHD 102
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GR+I EFE ++ + Y PN K E + R+ WD +++ + KP+I CGD
Sbjct: 103 QEGRIITLEFEKYFFVTVYTPNA--KSELERLEYRQLWDSLFFDYLKRLEVEKPVIVCGD 160
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+++P+ PN+ W GFT ER FG L G ID +R
Sbjct: 161 LNVAHQEIDLTNPK------------PNR--W-NAGFTDEERAGFGHYLANG-FIDTFRH 204
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +K + + WS + R RIDYF++SE L + + ++ + GSD
Sbjct: 205 FYPDKTGEYTW-WSNFFKSRDRNIGWRIDYFLISERLVTNLKSAFIR------QEIRGSD 257
Query: 336 HCPVSLEL 343
HCPV +++
Sbjct: 258 HCPVGIKI 265
>gi|300362647|ref|ZP_07058823.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353638|gb|EFJ69510.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 275
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 141/321 (43%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ A G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRATGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQP---K 148
E+ + F +Y W A YAGT L K P K
Sbjct: 58 EILAEM------------------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 149 KVSFSLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
V + E D GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 100 PVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLD 157
Query: 207 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+H ID+ HPE + GFT ER+ F +LK
Sbjct: 158 QVKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLLK 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H +++ +SW + K RIDY+IVS + ++I EM
Sbjct: 203 LG-FTDTFRKIH--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIANQITKSEMLD 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DHCP+ LE++
Sbjct: 260 TGER------KDHCPIMLEIN 274
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GR++ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRMVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ F+ Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFRGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|403071080|ref|ZP_10912412.1| exodeoxyribonuclease [Oceanobacillus sp. Ndiop]
Length = 253
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK + ++ N I D D+ +QE +
Sbjct: 1 MKLVSWNVNGIRACVKKGFLDYFNEI---DADIFCIQESK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L + Y +W+ A K Y+GTA+ KK +P V + L K D
Sbjct: 38 ---------LQEGQINLELDGYHQYWNYAIRKGYSGTAVFTKK--KPLHVRYGLGKEDNQ 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
GR+I EF F+L+N Y PN+ K + R +W+ + ++ + KP+I+CGD
Sbjct: 87 EEGRIITLEFNEFFLVNVYTPNS--KRDLTRLDYRLEWEDELYSYLRELDEEKPVIYCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ + +K + G GFT ER + +L G +D R
Sbjct: 145 LNVAHQEIDLKN---------------HKTNHGNSGFTAQERGKMTRLLDSG-FVDTLRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H +K+ + WS + R RIDYFIVS+ L + ++ H + + GSD
Sbjct: 189 FHPDKEGIYSW-WSYMKTIRERNIGWRIDYFIVSKRLVPYLKNSDV--HSLVM----GSD 241
Query: 336 HCPVSLELSE 345
HCPV+L++ +
Sbjct: 242 HCPVALDMDD 251
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCALKKGYSGVVTFSKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 140/307 (45%), Gaps = 61/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L ++ F +F+ D+ +QE +M +
Sbjct: 1 MRLVSWNVNGLRACMQKG---FKDFLLKSGADIFCVQETKMQPDQADFV----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK--TD 158
F+NY +W+ A K Y+G L K + LE+ T+
Sbjct: 47 ------------------FENYHAFWNSAQKKGYSGVLTLSKSAPLDVRYGLGLEEHDTE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLN 217
GRVI E+E FYL+N Y PN+ + R +W+ +EF+ S K ++ CGDLN
Sbjct: 89 GRVITCEYEYFYLVNVYTPNS--QRGLLRLPYRLQWESVFREFLQNLASHKEVLICGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H EID+++P+ N+ + GF+ ER FG +L+ G LID YR +
Sbjct: 147 VAHTEIDLTNPQ------------SNRYN---AGFSDPERNAFGQLLQLG-LIDTYRHFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+K + WS + R RIDYF+ S+ L+ ++ + H + GSDHC
Sbjct: 191 PDK-TEVYTWWSYMNQSRARNIGWRIDYFLASQGLRSQLKDACIYAHIL------GSDHC 243
Query: 338 PVSLELS 344
PV LE+S
Sbjct: 244 PVGLEMS 250
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 141/307 (45%), Gaps = 65/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K+V+WN N + +K F + D D+ ALQE T
Sbjct: 1 MKYVSWNVNGIRACLKKG---FLESFKSLDADIFALQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EKTD 158
KA +++ L P Y ++ + A K Y+GTA+L + +P VS+ + E+ D
Sbjct: 37 KAQKDQI-----DLDIP---GYTLYTNDAIKKGYSGTAILTR--MKPLSVSYGIGIEEYD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDL 216
GRVI EFE +Y + Y PN+ K+E R +W+ + L KP+I CGDL
Sbjct: 87 QEGRVITLEFEDYYFVPCYTPNS--KKELARIDYRMEWEDAFLAY-LDALNKPVILCGDL 143
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P + GF+ ER + +L G ID +R+L
Sbjct: 144 NVAHHEIDLKNP---------------SSNHHNAGFSDQERSKMTELLSHG-YIDTFRYL 187
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K D WS + R RIDYFIVSE LK+RI + GSDH
Sbjct: 188 YPDKK-DAYTWWSYMFKSRERNAGWRIDYFIVSESLKERI------KESLIYSDILGSDH 240
Query: 337 CPVSLEL 343
CP+ LE+
Sbjct: 241 CPIGLEM 247
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMGWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 141/309 (45%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R N F +F T+ D D+ +QE +M
Sbjct: 1 MKLISWNVNGL--RACMN-KGFMDFFTSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G K +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCALKKGYSGVVTFSKT--KPLNVSYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EF+ FYL+N Y PN+ + + R W+ ++F+ KP+I CGD
Sbjct: 87 TEGRVITCEFDKFYLVNVYTPNS--QRALARLEYRMSWEIEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R
Sbjct: 145 LNVAHNEIDLENP---------------KANRKNAGFSDEEREKFSELLNAG-FIDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + R RIDYF+ S LK I ++ E GSD
Sbjct: 189 FYPTKEKAYTW-WSYMQQSRERNIGWRIDYFLCSNSLKIEIKDAKI------YESILGSD 241
Query: 336 HCPVSLELS 344
HCPV LEL+
Sbjct: 242 HCPVGLELN 250
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINMEHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGD 215
+GRVI EFE +++ Y PN+ + E + R +W+ + ++L+ S K ++ CGD
Sbjct: 87 KEGRVITLEFEDLFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +S WS + RIDYF+VS L+DRI + + GS
Sbjct: 189 FN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GS 240
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 241 DHCPVKL 247
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 142/307 (46%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L VK F + + D D+ +QE ++ QE + D
Sbjct: 2 IQLVSWNVNGLRACVKKG---FLDVMEQLDADIFCIQETKL------------QEGQID- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K K +++ D
Sbjct: 46 -------------LELPDYYQY---WNYAEKKGYSGTAVFTKIKPLSVKNGIGVDEFDHE 89
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GRVI EF+ ++L+ Y PN+ + E R W++ +E++L+ KP+I CGDLN
Sbjct: 90 GRVITLEFDDYFLVTCYTPNS--QSELARLSYRMDWEENFREYLLKLEEDKPVILCGDLN 147
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H EID+ +P K + GFT ER++F +L+ G ID +R H
Sbjct: 148 VAHTEIDLKNP---------------KTNRKNAGFTDEEREKFTKLLEAG-FIDTFR--H 189
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
D+ +S WS + + RIDYF VSE L++R+ + YGSDH
Sbjct: 190 FYPDVTEAYSWWSYRFRAREKNAGWRIDYFCVSEGLEERL------AEAVIHTDIYGSDH 243
Query: 337 CPVSLEL 343
CPV L L
Sbjct: 244 CPVGLYL 250
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 136/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 142/310 (45%), Gaps = 74/310 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ PD++ +QE ++ + +L D
Sbjct: 1 MKMISWNVNGIRACLKNG---FMDFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y +W+ A+ K Y+GTA+ K +P V ++ T+
Sbjct: 49 --------------------GYFQYWNYAEKKGYSGTAIFTK--IKPNNVILGIKNTEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
GRV+ EF+ +YL+N Y PN+ + + R+KWD+ ++ KP+I+CGD
Sbjct: 87 GEGRVLTLEFDKYYLINVYTPNS--QRGLTRLEYRQKWDQDFLNYIKTLENEKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER F I+ G ID +R
Sbjct: 145 LNVAHKEIDLKNP---------------KNNVKNAGFTPEERIGFDNIVDSG-FIDTFRE 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVS----EELKDRIIACEMQGHGIELEGF 331
+KE D +S+ N K G RIDYF +S + LKD I E+
Sbjct: 189 FNKEPDNYSWWSYRFNARSKNIG--WRIDYFCISKILRDNLKDAFIMSEVM--------- 237
Query: 332 YGSDHCPVSL 341
GSDHCPV +
Sbjct: 238 -GSDHCPVGI 246
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ F Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFNGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNTG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|389575850|ref|ZP_10165878.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
gi|389311335|gb|EIM56268.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
Length = 250
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 64/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K + F D D +QE ++ + P+ E
Sbjct: 1 MKFISWNVNGLRACMKKD---FDKTFRELDADFFCIQESKLQEGQIEYCPEGWNE----- 52
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+W+ A+ K Y+GTA+ KK E+ D
Sbjct: 53 ------------------------YWNYAEKKGYSGTAIWAKKPALQVTYGIGEEEHDHE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GRVI E++TF+L+ Y PN+ ++ R W+ + ++ + KP+I CGDLN
Sbjct: 89 GRVITLEYDTFFLVTVYTPNS--QDGLKRLDYRMTWEDSFRAYLGKLDEKKPVIVCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+HEEID+ +P K + GFT ER +F +L G D++R+LH
Sbjct: 147 VAHEEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FTDSFRYLH 190
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
E D +S WS + + RIDYF+ SE +K++I + + +GSDH
Sbjct: 191 PE---DVEYSWWSYRFHAREKNAGWRIDYFLTSERVKEKIEQAVIH------QEIFGSDH 241
Query: 337 CPVSLELS 344
CPV L++S
Sbjct: 242 CPVELDIS 249
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK + + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTHL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|389816348|ref|ZP_10207511.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
gi|388465341|gb|EIM07660.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
Length = 251
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 142/311 (45%), Gaps = 69/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K F +F T D DV LQE+++
Sbjct: 1 MKLISWNVNGLRAVMKKG---FMDFFTEADADVFCLQEIKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E I M Y +W+ A K Y+GTA+ K+ +P + + L
Sbjct: 39 ----QEGQIEM------DLPGYYTYWNYAHKKGYSGTAIFTKE--EPLSIQYGLGSEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
T+GR+I EF+ Y++ Y PN+ + R W++ I FV KP+I CGD
Sbjct: 87 TEGRMIALEFDGHYVVTVYTPNS--QHGLLRLDYRLLWEEAILSFVKTLDNQKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P+ NK++ GFT ER + L +G +D +R
Sbjct: 145 LNVAHEEIDLKNPK------------ANKKN---SGFTPDERGKMTQFLTDG-FVDTFRH 188
Query: 276 LHKEKDMDCGFS--WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
H + GF WS + + RIDYFI S++L R+ + ++ +G
Sbjct: 189 FHP---TETGFYSWWSYRSNCREKNVGWRIDYFIASQKLLPRLKSAKIHA------DVWG 239
Query: 334 SDHCPVSLELS 344
SDHCPV L+++
Sbjct: 240 SDHCPVELQIA 250
>gi|295397847|ref|ZP_06807910.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
gi|294973892|gb|EFG49656.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
Length = 275
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 138/321 (42%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P E I PDVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGASPRAELSREVLKMIREHQPDVIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ + +Y++ W A YAGT L KK + P+ V+
Sbjct: 58 DIIE------------------ADVPDYKVVWVSSVEPARKGYAGTMFLYKKDYTPE-VT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F + +GR+I EF FY+ N Y PN G + R+ WD + ++
Sbjct: 99 FPQIGAPTTMDYEGRMITLEFTDFYVTNVYTPNAG--SALARLEDRQVWDVQYANYLADL 156
Query: 206 SGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
K P+I CGD NV+H EID++HP K + GFT ER F +L
Sbjct: 157 DAKKPVIACGDFNVAHTEIDLAHP---------------KNNHFSAGFTDEERAGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D +R +H D++ ++W + K RIDY++VS+ + D++ EM
Sbjct: 202 NRG-FTDTFRHIH--GDVEGVYTWWAQRVKTSKINNSGWRIDYWLVSDRIADKVQKSEML 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPILLEI 273
>gi|340624333|ref|YP_004742786.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
gi|339904601|gb|AEK20043.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
Length = 249
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 143/310 (46%), Gaps = 74/310 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ PD++ +QE ++ + +L D
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMDFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y +W+ A+ K Y+GTA+ K +P +VS+ + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAIFTK--IKPNEVSYGIGNNEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
GRVI +F+ +YLLN Y PN+ + + R+KWD+ +V K P+I+CGD
Sbjct: 87 GEGRVITLKFDEYYLLNVYTPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER F I+ G +D +R
Sbjct: 145 LNVAHKEIDLKNP---------------KTNVKNAGFTPEERNGFDNIVNSG-FLDTFRE 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELEGF 331
+KE D +S+ N K G RIDYF +S+ LKD I E+
Sbjct: 189 FNKEPDNYSWWSYRFNARAKNIG--WRIDYFCISKSLKGNLKDAFIMPEVM--------- 237
Query: 332 YGSDHCPVSL 341
GSDHCPV +
Sbjct: 238 -GSDHCPVGI 246
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 137/306 (44%), Gaps = 63/306 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K VTWN N L + F + D D+I++QE T
Sbjct: 1 MKLVTWNVNGLRACMNKG---FKESMEKLDADIISIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
K RE+ + P + Y+ W S Y+GTA+ + +P V++ L
Sbjct: 37 KMQREQA-----SFDFPGY--YEYWNSAVKKGYSGTAIFSR--IKPLSVTYGLGIEEHDQ 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AE++ FYL+N Y PN+ + E R W+ Q + S K I CGD+
Sbjct: 88 EGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAWEDAFQAYCEDLSKKKTTIVCGDM 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HE ID+ +P+ + GF+ ER++ A L G +D++R L
Sbjct: 146 NVAHEPIDLKNPD---------------SNHHNAGFSDEERQKLDAFLARG-FVDSFRML 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +++ + WS + R RIDYF+VSE +D+I + + GSDH
Sbjct: 190 YPDREGAYTW-WSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTI------MNEIMGSDH 242
Query: 337 CPVSLE 342
CPV LE
Sbjct: 243 CPVVLE 248
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NAFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 137/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ----------QQDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|432328166|ref|YP_007246310.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
gi|432134875|gb|AGB04144.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
Length = 257
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L ++WN N + V+N F F+ ++PD++ALQE++ A D P
Sbjct: 5 LLLMSWNVNGIRAAVRNG---FLKFLEKYNPDILALQEIK---AREDDIP---------- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EKTD 158
L ++ Y+ +++ A K YAGTAL K +P+ VSF + E+ D
Sbjct: 49 -------------LEVRYYEGYRKFFNPARRKGYAGTALFTK--IEPESVSFGIGDERFD 93
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI AE+E FYL+N Y PN+ + + ++D++I ++ + KP++ CGD
Sbjct: 94 SEGRVITAEYERFYLVNAYFPNS--QHGLTRLDFKIEFDRKIHAYLNELRRSKPVVLCGD 151
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
NV+H+EID+++P K++ GFT ER L +G +D +R
Sbjct: 152 FNVAHKEIDLANP---------------KQNEKNAGFTPEERAWMDEFLNDG-YVDTFRM 195
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
KE +++ N + R R+DYF+VS++L + + + YGSD
Sbjct: 196 FTKEGGHYTWWTYRFN--ARARNIGWRVDYFVVSKDLVPHVKKSWI------MSDVYGSD 247
Query: 336 HCPVSLEL 343
H P+++ L
Sbjct: 248 HAPIAMIL 255
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 136/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N + VK F ++ D D A+QE + K EL+ D
Sbjct: 1 MKFVSWNVNGIRACVKKG---FLDYFHQVDADFFAIQETK--------CQKGQIELQLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS----LEK 156
Y+ +W+ A+ K Y+GTA+ K P V + L
Sbjct: 49 --------------------GYEQYWNDAERKGYSGTAIFTKHT--PLSVQYGIGEDLID 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E+ FYL+ Y PN+ K + + R W++ ++ KP+I CGD
Sbjct: 87 QEGRVIALEYSKFYLVTCYTPNS--KRDLSRLPYRLSWEEHFLAYLKNLEEKKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ + K + G GFT ER + +L G D++R+
Sbjct: 145 LNVAHTEIDLKNA---------------KSNHGNSGFTQEERGKMTTLLSSG-FTDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E D WS + R RIDYFIVS EL + I E+ + GSD
Sbjct: 189 LYPET-TDKYSWWSYMNKVRERNIGWRIDYFIVSNELTNSIKKAEIHNEIL------GSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVFLEL 249
>gi|325285209|ref|YP_004260999.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324320663|gb|ADY28128.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 144/307 (46%), Gaps = 60/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ V+WN N + VK EF + +PD++ +QE T
Sbjct: 1 MHIVSWNVNGVRAVVK---KEFFESVKYMNPDILCIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL--VKKCFQPKKVSFSLEKTD 158
KA E + +ALS P +N+ + + A+ K Y+GTA L K + T+
Sbjct: 37 KAQDNE---VAKALS--PLENFSLASNSANKKGYSGTATLSSTKPLTIKADIGIEAHDTE 91
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLN 217
GRV+ E+E FYL+N Y PN+G K + + R++WDK +++ KP+I CGD N
Sbjct: 92 GRVLCTEYENFYLVNVYVPNSGQKLDR--LEYRKQWDKDFLDYLKNLEKKKPVIACGDFN 149
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDAYRFL 276
V+H+ ID+ + +K ++ + G+T E + +G +D++R L
Sbjct: 150 VAHKAIDLKN---------------DKSNYNKTAGYTQTEIDGMNNFIADG-FVDSFRML 193
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
H ++ + WS + R RIDYF+VS+ +KD++ + GSDH
Sbjct: 194 HPDEVVYT--FWSYRFKSRERNTGWRIDYFLVSQSIKDKVKEVTV------FSDIMGSDH 245
Query: 337 CPVSLEL 343
CP+ L++
Sbjct: 246 CPIGLKI 252
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 135/309 (43%), Gaps = 63/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D DV +QE +M ++ A + ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FLDFFQEADADVFCVQETKMQQGQAELALEGYE------ 51
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE----KT 157
Q W S Y+GTA+ + P V++ + T
Sbjct: 52 ----------------------QFWCSAEKKGYSGTAVFTR--IPPVSVAYGIGIPEFDT 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI EFE F L+N Y PN + R +W+ + ++L+ KP++ CGDL
Sbjct: 88 EGRVITVEFEKFTLINVYTPNA--QRGLTRIDFRMQWEDAFRVYLLRLQESKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ + K + G GF+ ER + +L+ G L D++R+L
Sbjct: 146 NVAHNEIDLKN---------------YKTNRGNAGFSDEERGKMTELLQSG-LTDSFRYL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ EK C WS + RIDYF+ S+ LKD+I + GSDH
Sbjct: 190 YPEK-TGCYTWWSYMFNARANNAGWRIDYFLTSDVLKDQI------EDSVIYSEVLGSDH 242
Query: 337 CPVSLELSE 345
CP+ L L E
Sbjct: 243 CPIGLFLRE 251
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 138/310 (44%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFQQEQADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK-- 156
+EE++ PF+ Y +W+ A K Y+GTA+ KK +P VS+ + +
Sbjct: 39 ---QEEQI---------PFQLEGYHAYWNFAQKKGYSGTAVFAKK--EPLSVSYGIGQEE 84
Query: 157 --TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
+GRVI EF+TFYL+ Y PN+ + + R W+ ++ KP+I C
Sbjct: 85 HDQEGRVITLEFDTFYLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVILC 142
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H EID+ +P K + GFT ER +F +LK G ID +
Sbjct: 143 GDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKFSELLKNG-FIDTF 186
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R + +K + WS + RIDYF VSE LK+ + + + G
Sbjct: 187 RHFNPDKK-EAYTWWSYMFNARANNAGWRIDYFCVSESLKNEL------KDAMIYDQIMG 239
Query: 334 SDHCPVSLEL 343
SDHCPV LE+
Sbjct: 240 SDHCPVGLEI 249
>gi|418010415|ref|ZP_12650192.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
gi|410553904|gb|EKQ27892.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
Length = 252
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 134/308 (43%), Gaps = 70/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A K D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVKLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGMGVPEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
T+GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++CG
Sbjct: 86 DTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + +K + GFT ER F L G ID +R
Sbjct: 144 DLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + +S WS + RIDYF+ S + K I ++ L G
Sbjct: 188 NLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMG 238
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 239 SDHCPVEL 246
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 144/312 (46%), Gaps = 68/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K + + + +PD++ALQE + ++ H L
Sbjct: 59 IKIISWNVAGLRALIKKSG---HSVLVEENPDIVALQETKCVEVPNELQNGYHTFLNASE 115
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--- 158
K S + G LL K+ +P KV+++ +
Sbjct: 116 K-----------------------------SGHGGVLLLTKE--EPIKVAYTFDDKSKCV 144
Query: 159 ------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 211
GR+I+AE+E++YL+N Y PN+G + +R+ WD F+ + KP++
Sbjct: 145 VDGNGKGRIIIAEYESYYLINAYVPNSG--RGLVNLDKRKIWDDYYLTFIKKLDLSKPVV 202
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
+ GDLNV+H+EID+++P+ NK GFT ER F +L G +D
Sbjct: 203 YVGDLNVAHQEIDLANPK----------TNRNK----TAGFTDQERNDFTRLLDAG-FVD 247
Query: 272 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R L+ +K+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 248 VFRRLNPDKEGAYTF-WSNMHNAREKNVGWRLDYFVVSERIMNKVKKCDI------LHSI 300
Query: 332 YGSDHCPVSLEL 343
GSDHCP+SL +
Sbjct: 301 KGSDHCPLSLTI 312
>gi|335045714|ref|ZP_08538737.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759500|gb|EGL37057.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 140/307 (45%), Gaps = 66/307 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + N F D D+ LQE ++ A +
Sbjct: 3 KLISWNVNGLRAVMGKN---FMEDFRKLDADIFCLQETKLQAGQIE-------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKTD 158
L P + +Q W Y+GTA+ K+ +P VS+ + +
Sbjct: 46 ------------LDLPGY--FQYWNYAVKKGYSGTAIFTKE--EPISVSYGIGVEEHDQE 89
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLN 217
GRVI AEF+ FYL+ Y PN+ + E R +++ ++L K P+++CGDLN
Sbjct: 90 GRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEFEDAFLSYILNLEKKKPVVYCGDLN 147
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+HEEID+ +P+ + GF+ ER +F +L G L D++R+ +
Sbjct: 148 VAHEEIDLKNPD---------------TNHLSAGFSDEERAKFSRVLDSGYL-DSFRYFY 191
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
EK+ +S WS + R RIDYF+VS++L+ ++ + + + GSDH
Sbjct: 192 PEKE---EYSWWSYRTKARERNVGWRIDYFVVSKKLEKKLHSASIHTEIM------GSDH 242
Query: 337 CPVSLEL 343
CPV L L
Sbjct: 243 CPVELIL 249
>gi|225420139|ref|ZP_03762442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
gi|225041196|gb|EEG51442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 65/307 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F ++ D DV LQE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVGKG---FLDYFKEADADVFCLQETKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
L P + Y W+ A K Y+GTA+ K+ +P V + L
Sbjct: 46 ------------LDLPGYHQY---WNYAQKKGYSGTAMFTKE--EPVSVRYGLGIEEHDM 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI AEF+ ++++ Y PN+ ++ R +W+ ++ + KP+I+CGDL
Sbjct: 89 EGRVIAAEFQEYFVVTCYTPNS--QDGLARLDYRMEWENAFLAYLKKLEEEKPVIFCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 147 NVAHKEIDLKNP---------------KSNRKNAGFTDEERGKFTDLLGAG-FIDTFRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +++ + WS + + RIDYF SE LKDR+++ ++ + GSDH
Sbjct: 191 YPDREGIYSW-WSYRFSARAKNAGWRIDYFCASESLKDRLVSADIHTEVM------GSDH 243
Query: 337 CPVSLEL 343
CPV L +
Sbjct: 244 CPVELVI 250
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 148/310 (47%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + E+ N ++ D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACLKKGFLEYFNEVS---GDIFCVQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
L P + Y W+ A+ K Y+GTA+ K QP V + + +
Sbjct: 45 -------------LELPGYFQY---WNYAEKKGYSGTAIFTK--IQPLTVQYGIGEAKHD 86
Query: 158 -DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI EF +YL+N Y PN+ + E R +W+ + +++ S KP+I CGD
Sbjct: 87 KEGRVITLEFCDYYLVNVYTPNS--QRELARLDYRLQWEDAFKNYLVNLDSEKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ NK + GFT ER + +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNPK------------NNKRN---AGFTEEERNKLTELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D + ++ WS + R RIDYF+ S++L + + E+ GS
Sbjct: 189 FY--PDTEGAYTWWSYITKARERNAGWRIDYFLASQKLDNWLTDAEIHAD------IMGS 240
Query: 335 DHCPVSLELS 344
DHCPV+L+L+
Sbjct: 241 DHCPVALKLA 250
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|403669653|ref|ZP_10934844.1| exodeoxyribonuclease [Kurthia sp. JC8E]
Length = 253
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 140/311 (45%), Gaps = 71/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + +K W + D D +QE + A + D P
Sbjct: 1 MKFVSWNVNGIRACLKKGWL---TYFQEVDADFFCIQETKCQAGQVEIDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
Y+ +W+ A K Y+GTA+ K P V + +
Sbjct: 49 ---------------------GYEQYWNYALKKGYSGTAIFTKHT--PLSVKYGVGDHET 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+ +GR+I E+E FY++ Y PN+ K + + R W+ ++ ++ Q KP+I+CG
Sbjct: 86 EDEGRIITLEYENFYVVTVYTPNS--KRDLARLEERLVWEDDLRVYLQQLDAQKPVIYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ + K + G GFT ER + +L G D++R
Sbjct: 144 DLNVAHEEIDLKNA---------------KSNVGNSGFTDGERSKMTLLLNSG-FTDSFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
HK F+W + + K R + + RIDYFIVS+ L +I E+ +
Sbjct: 188 --HKYPTESNRFTW-WSYMNKVRERNIGWRIDYFIVSDRLVPQIETAEIHDQQL------ 238
Query: 333 GSDHCPVSLEL 343
GSDHCP++L L
Sbjct: 239 GSDHCPIALTL 249
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ F Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFNGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 136/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L +K F +F T + DV LQE+++
Sbjct: 2 LKLISWNVNGLRAVMKKG---FMDFFTEVNADVFCLQEIKL------------------- 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+E I M Y +W+ A K Y+GTA+ K+ +P + + L
Sbjct: 40 ----QEGQIEM------DLPGYYTYWNYAHKKGYSGTAIFTKQ--KPLSIQYGLGLEELD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
T+GR+I EF+ +Y++ Y PN+ + R W+ I FV KP++ CGD
Sbjct: 88 TEGRIITLEFDNYYVITVYTPNS--QHGLLRLDYRLLWEDAILSFVKALDNHKPVLLCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P+ NK++ GFT+ ER + L++G +D +R
Sbjct: 146 LNVAHEEIDLRNPK------------ANKKN---SGFTLEERGKMTQFLEKG-FVDTFRH 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H E++ + WS + + RIDYF+ S+ L +Q I ++ +GSD
Sbjct: 190 FHPEEEGHYSW-WSYRSNCREKNVGWRIDYFLASQRL-----VPALQSAKIHID-IWGSD 242
Query: 336 HCPVSLEL 343
HCPV L++
Sbjct: 243 HCPVELQV 250
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 138/307 (44%), Gaps = 67/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L ++ F +F D D +QE ++ + D P HQ
Sbjct: 5 MKFISWNVNGLRACMQKG---FLDFFNEVDADFFCVQETKLQEGQIALDLPGYHQ----- 56
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 57 -------------------------FWNYAEKKGYSGTAIFTKH--EPLSVSYGIGIPEH 89
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GRVI E++ FYL+ Y PN+ + E R +W++ F+ + KP+I CG
Sbjct: 90 DHEGRVITLEYDAFYLVTCYTPNS--QNELARLPYRMQWEEDFLAFLKRLDEVKPVIVCG 147
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ +P K + GF+ ER + +L G D +R
Sbjct: 148 DLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTTLLNSG-FTDTFR 191
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +K+ + WS + + RIDYFI S L ++ +Q GI E YGS
Sbjct: 192 YFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFITSRCLDEK-----LQSAGIHTE-VYGS 244
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 245 DHCPVEL 251
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|417980207|ref|ZP_12620888.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
gi|410525434|gb|EKQ00336.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
Length = 252
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 134/308 (43%), Gaps = 70/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K EF D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---EFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGMGVPEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
T+GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++CG
Sbjct: 86 DTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + +K + GFT ER F L G ID +R
Sbjct: 144 DLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + +S WS + RIDYF+ S + K I ++ L G
Sbjct: 188 NLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMG 238
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 239 SDHCPVEL 246
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 141/307 (45%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ LQE ++ QE + +
Sbjct: 1 MKLVSWNVNGLRACVGKG---FLDYFKEADADIFCLQETKL------------QEGQIEL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT--- 157
E Y+ +W+ A+ K Y+GTA+ + +P V + +E+
Sbjct: 46 DLGSE----------------YEQYWNYAEKKGYSGTAVFTR--IKPLSVRYGMEEDYEP 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GR+I EFE FYL+ Y PN K + + R +W+ R + ++ KP+I CGDL
Sbjct: 88 EGRIITLEFEQFYLVTVYTPNA--KRDLSRLDYRMEWEDRFRTYLTGLDAVKPVIVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H ID+ + K + G G+T+ ER + +L G ID +R
Sbjct: 146 NVAHNPIDIKNA---------------KSNEGNSGYTLEERGKMTELLASG-FIDTFRHF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +++ + WS P + R RIDYF+ S L A ++Q GI+ GSDH
Sbjct: 190 YPDREGVYSW-WSYMPKIRERNIGWRIDYFLASSRL-----APKLQDAGIDCH-ILGSDH 242
Query: 337 CPVSLEL 343
CPVSL +
Sbjct: 243 CPVSLTV 249
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| exodeoxyribonuclease III [Coprococcus comes ATCC 27758]
Length = 231
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 129/284 (45%), Gaps = 60/284 (21%)
Query: 65 NFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQ 124
+F D D+ LQE +M +E +L+L P + Y
Sbjct: 2 DFFKEADADIFCLQETKM----------------------QEGQLVL----DLPEYHQY- 34
Query: 125 IWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNG 180
W S Y+GTA+ KK +P V++ L +GRVI EFE FY + Y PN+
Sbjct: 35 -WNSAVKKGYSGTAIFTKK--EPLSVTYGLGIEEHDQEGRVITLEFEDFYFITVYTPNS- 90
Query: 181 WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 239
+ E R W+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 91 -QSELARLDYRMTWEDAFLAYLKKLEETKPVIFCGDLNVAHKEIDLKNP----------- 138
Query: 240 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 299
K + GFT ER +F A+L G ID YR+ + +K+ + WS + +
Sbjct: 139 ----KTNRKNAGFTDEERAKFSALLDAG-FIDTYRYFYPDKEGIYSW-WSYRFKAREKNA 192
Query: 300 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
RIDYF S+ L+ R+ ++ L +GSDHCPV L+
Sbjct: 193 GWRIDYFCTSKALESRLEDAKI------LTNVFGSDHCPVELDF 230
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GR++ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRMVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|313885686|ref|ZP_07819435.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
gi|312619051|gb|EFR30491.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
Length = 275
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 140/324 (43%), Gaps = 73/324 (22%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N S I +PD+IA+QE ++ A G + H
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALLSRDVLQTILNLNPDIIAIQETKLSAKGPT---QKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ D FK+Y + W A YAGT L K +PK V+
Sbjct: 58 EILADL------------------FKDYMVVWRSSEEPARKGYAGTMFLYKHDLEPK-VT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 202
F S +GR+I EF+ FY+ Y PN G N+ +R R+ WD++ ++
Sbjct: 99 FPEIEAPSPMDAEGRMITLEFDDFYVTQVYTPNAG-----NALKRLADRQIWDQQYAAYL 153
Query: 203 LQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 261
K ++ GD NV+H EID++HPE + GFT ER F
Sbjct: 154 ASLDQDKIVLATGDFNVAHHEIDLAHPE---------------NNHHSAGFTDEERAGFT 198
Query: 262 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 319
+L G D +R LH D+ ++W + K RIDY++VS DR+I
Sbjct: 199 QLLAHG-FTDTFRHLH--GDVTGAYTWWAQRVKTSKINNSGWRIDYWLVSNRAVDRVIQS 255
Query: 320 EMQGHGIELEGFYGSDHCPVSLEL 343
E+ G DH P+ LE+
Sbjct: 256 EIIDSGTR------QDHTPILLEI 273
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK R+ + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F F T D D+ +QE +M H +
Sbjct: 1 MKLISWNVNGLRACLSKG---FEGFFNTADADIFCIQETKM-----------HPD----- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
E LI Y+ +W+ A K Y+GTA+ + P V + L
Sbjct: 42 --QAEIGLI-----------GYEKYWNSAVKKGYSGTAVFTR--ITPLSVIYGLNIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I EFE F+L+N Y PN+ K E R +W+ + +++ + KP+I CGD
Sbjct: 87 QEGRLITLEFENFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLITLNQSKPVIICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GFT ER + A+L+ G D +R
Sbjct: 145 INVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLEAG-FTDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
++ +K +D WS + R RIDYF+VS L++ I + GSD
Sbjct: 189 IYPDK-IDAYTWWSYMMNARARNIGWRIDYFLVSNTLREAIKEATI------YPDVMGSD 241
Query: 336 HCPVSLEL 343
HCP+ LE+
Sbjct: 242 HCPIGLEI 249
>gi|338175515|ref|YP_004652325.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
gi|336479873|emb|CCB86471.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 144/310 (46%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F +FI +DPD++ LQE T
Sbjct: 1 MKIISWNVNGIRSILKKG---FLDFINKYDPDILCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS----FSLEK 156
KAS+E + Y +W+ A K Y+GT + K+ +P V L
Sbjct: 37 KASQENVQL--------NLSQYHQYWNSAQKKGYSGTCVFTKE--KPLNVENGILLDLHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-RKWDKRIQEFVLQCS-GKPLIWCG 214
+GR I E+ TF+L+N Y PN+ K + + + R ++WD ++ KP+I+CG
Sbjct: 87 KEGRTITLEYPTFFLVNVYVPNS--KRDLSRLEYRCKQWDVDFLNYLKNIERKKPVIFCG 144
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H E D++ P+ A +N + GFT ER F I++ G +D +R
Sbjct: 145 DLNVAHTENDLAFPK----ANINNH-----------GFTAEERAGFDHIVESG-FVDIFR 188
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
EK WS + R RIDYF++S L+ RI + L+ GS
Sbjct: 189 EF--EKSSGHYTWWSQFNRCRERDIGWRIDYFLISPSLRSRIKKASI------LKDVMGS 240
Query: 335 DHCPVSLELS 344
DHCP++LELS
Sbjct: 241 DHCPITLELS 250
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 66/305 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN + + +K N ++ D D+IALQE + +++ D+
Sbjct: 140 IKICTWNVSGIRAVLKKNG---MTYLEREDADIIALQETKCET----------KKIPDEV 186
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLEK-- 156
K K Y ++ DSK Y G AL KK +P +S L++
Sbjct: 187 K-----------------LKGYTRYF--LDSKKAGYCGMALYSKK--EPIDISMGLDEEF 225
Query: 157 -TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
+GR+I AE+E FYL+N Y PN G K + +R KW++ ++ + K P+I CG
Sbjct: 226 DDEGRLITAEYEHFYLVNVYVPNAGNKLV--TLPKRLKWNEAFKKHIQDLDKKKPVIICG 283
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+H+EID+ +P K + GFT ER L+ G +D +R
Sbjct: 284 DMNVAHQEIDLKNP---------------KTNTKNAGFTKEERDGMTDFLQAG-FVDTFR 327
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ +K D W+ + + R+DY+IVSE++K+++ C++ + + +GS
Sbjct: 328 LLYPDK-TDAYTFWAYFNNARSKNIGWRLDYYIVSEKIKNKV--CDV----VNRDQVFGS 380
Query: 335 DHCPV 339
DHCPV
Sbjct: 381 DHCPV 385
>gi|372324144|ref|ZP_09518733.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
gi|366982952|gb|EHN58351.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
Length = 274
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 143/320 (44%), Gaps = 65/320 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL +++ P + I PD ++QE ++P G K Q
Sbjct: 1 MNFISWNIDSLNAAIEHKSPRGELTFALLSQIAAQKPDFFSIQESKLPVTGLN--AKQTQ 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
L D +R S+PP A YAG L K+ QP +SF+
Sbjct: 59 VLNDLFPG----YCTFVRN-STPP----------AKKGYAGVITLAKE--QP--ISFNCP 99
Query: 156 KTD--------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 206
D GR+IL E+ FYLLN Y PN+G + + R WD + +V Q +
Sbjct: 100 TIDAPDTMDEEGRIILLEYPDFYLLNVYTPNSG--DGLKRLEMRGLWDDNFRVYVSQLAE 157
Query: 207 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
K +I+ GDLNV+HEEID+ +P + GFT ER +F +L+
Sbjct: 158 RKAVIFSGDLNVAHEEIDLKNPS---------------TNHQSAGFTDQERDKFTQLLEA 202
Query: 267 GRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
G D +RF H + D +SW N + K RIDY++VS LKD+I M
Sbjct: 203 G-FTDTWRFQHPD---DVAYSWWSQRNRMAKPNNAGWRIDYYLVSSTLKDKIKKSGMIDS 258
Query: 325 GIELEGFYGSDHCPVSLELS 344
G +DH P+ L+++
Sbjct: 259 GTR------ADHAPIYLQMA 272
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 145/306 (47%), Gaps = 66/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ + +P++I +QE ++ + + E
Sbjct: 9 MKMISWNVNGIRACLKNG---FMDFLNSKNPEIICIQETKVQKGQVQLGLNGYFE----- 60
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE--KTD 158
+W+ A+ K Y+GTA+ K +PK V + + K+D
Sbjct: 61 ------------------------YWNYAEKKGYSGTAIFTK--IEPKSVKYGITNYKSD 94
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
GRVI EFE ++L+N Y PN+ + + R+KWDK + KP+I+CGD
Sbjct: 95 KEGRVITLEFEEYFLVNVYTPNS--QRGLKRLECRQKWDKDFLNHLKTLEQKKPVIFCGD 152
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K++ GFT ER F ++ G +D +R
Sbjct: 153 LNVAHKEIDLKNP---------------KQNIKNAGFTKEERNGFDNLINSG-FLDTFRE 196
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E + +S+ N K G RIDYF +S++L++R+ + GSD
Sbjct: 197 LNNEPENYTWWSYRFNAREKNIG--WRIDYFCISKKLRERL------KDAFIMSEVLGSD 248
Query: 336 HCPVSL 341
HCPV +
Sbjct: 249 HCPVGI 254
>gi|354806768|ref|ZP_09040248.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514743|gb|EHE86710.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
Length = 254
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 73/314 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSK-DAPKNHQEL 97
+KF++WN N L +K +F+TTF D D LQE +M A + D P HQ
Sbjct: 1 MKFISWNVNGLRAVLK------KDFMTTFNQLDADFFCLQETKMQAGQVELDLPGYHQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL-- 154
+++ A+ K Y+GTA+ K +P ++ +
Sbjct: 53 ----------------------------YFNYAEKKGYSGTAIFTKH--KPLTATYGIGQ 82
Query: 155 --EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 211
+GRVI E+ TFYL+ Y PN+ +++ R +W+ Q ++ S KP+I
Sbjct: 83 PEHDQEGRVITLEYPTFYLITCYTPNS--QDKLKRLDYRMRWENAFQTYIADLSTQKPVI 140
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
+CGDLNV+HE ID+ + +K + GF+ ER + +L G D
Sbjct: 141 FCGDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERGQMTTLLNRG-FTD 184
Query: 272 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R+ + ++ D WS + RIDYFI S +L+ +++ ++
Sbjct: 185 TFRYFYPDQP-DIYSWWSYRFHARDNNAGWRIDYFITSNDLQPKLVDAKIHTE------I 237
Query: 332 YGSDHCPVSLELSE 345
+GSDHCPV L+ +
Sbjct: 238 FGSDHCPVELDTQD 251
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 150/318 (47%), Gaps = 73/318 (22%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL++++ + NF D++ LQE ++ KD +
Sbjct: 288 VKVMTWNVNGLRALLKLESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKN 338
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF- 152
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 339 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 375
Query: 153 -----SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 206
S +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 376 TGLSGSDHDMEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEK 434
Query: 207 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
KP++ GDLN +HEEID+ +P A K N GFTI ER+ FGA +
Sbjct: 435 SKPVVLTGDLNCAHEEIDIFNP---AGNKRNA------------GFTIEERQSFGANFLD 479
Query: 267 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-RIDYFIVSEELKDRIIACEMQGHG 325
+D +R K+ G+++ G G + R R+DYF+VSE IA +
Sbjct: 480 KGFVDTFR---KQHPGVVGYTYWGYRHGGRKTNRGWRLDYFLVSES-----IAANVHDSY 531
Query: 326 IELEGFYGSDHCPVSLEL 343
I L GSDHCP+ L L
Sbjct: 532 I-LPDINGSDHCPIGLIL 548
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F + D D+ LQE ++ + HQ
Sbjct: 1 MKLISWNVNGLRAAVTKG---FIDSFNELDADIFCLQETKL---------QPHQ------ 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTD- 158
L P ++ Q W S Y+GTA+ + +P V+ +E+ D
Sbjct: 43 -----------IELELPGYE--QFWNSAVKKGYSGTAVFTR--IKPIAVTNGIGIEEHDQ 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
GRVI AEF+ FYL+ Y PN+ + E R W+ + ++L+ K P+I CGDL
Sbjct: 88 EGRVITAEFDNFYLVCCYTPNS--QRELARLDYRMAWEDAFRAYLLELDKKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GF+ ER + +L+ G D +R+L
Sbjct: 146 NVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTTLLESG-FTDTFRYL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D +SW + +GK R + + RIDYFI S+ L D+I ++ + +GS
Sbjct: 190 Y--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKRLDDKINEAKIH------QQIFGS 240
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|295110263|emb|CBL24216.1| exodeoxyribonuclease III [Ruminococcus obeum A2-162]
Length = 253
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 140/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N + + F + + DV LQE + + + P HQ
Sbjct: 1 MKLISWNVNGIRACITKG---FEDRFKELNADVFCLQETKCQQGQVELELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV--SFSLEKT 157
+W+ A+ + Y+GTA+ KK +P V +E
Sbjct: 53 -------------------------YWNYANRRGYSGTAVFTKK--EPLSVVNGIGIEAH 85
Query: 158 D--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
D GRVI EFE FY + Y PN+ + E + R +W++ ++L+ KP+I CG
Sbjct: 86 DKEGRVITLEFEEFYFVTVYTPNS--QSELRRLEYRMEWERDFLAYLLKLQEKKPVICCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D+NV+H+EID+ +P K + GFT ER F +L+ G +D +R
Sbjct: 144 DMNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFSRMLESG-FVDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + +K+ + WS + + RIDYFIVS LKDR +Q I E GS
Sbjct: 188 YFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFIVSPSLKDR-----LQDASIHTE-IMGS 240
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|410622567|ref|ZP_11333400.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410157921|dbj|GAC28774.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 255
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 146/308 (47%), Gaps = 60/308 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K +F + + + DV+ LQE T
Sbjct: 1 MKLVSWNVNGVRAAIKK---DFFQSLASLECDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL--VKKCFQPKKVSFSLEKTD 158
KA ++ ++ AL K Y ++ + A K Y+GT+++ VK + + +
Sbjct: 37 KAQDDQ---VIEALCD--LKGYHVFTNSAIKKGYSGTSIITRVKPIDVTRDIGIEEHDQE 91
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRV+ AEF+ FYL+ Y PN+G + S+ R +WD +V Q KP++ CGDLN
Sbjct: 92 GRVLCAEFDAFYLVTVYTPNSGDSLKRLSY--RTQWDADFLSYVKQLEALKPVVVCGDLN 149
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H +ID++ P+ PN G+T E +++ G +D +R L
Sbjct: 150 VAHRDIDIARPK------------PNYNK--SAGYTQKEIDGIDSLIAAG-YVDTFRHLF 194
Query: 278 KEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +SW G + R R+DYF+VS +LK++I ++ +GSDH
Sbjct: 195 PDT---VKYSWWSYRAGARERNVGWRLDYFLVSHKLKEQISGADIH------NDIHGSDH 245
Query: 337 CPVSLELS 344
CPVS++LS
Sbjct: 246 CPVSVQLS 253
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V + E+ D D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRSCVTKGFLEY---FKEMDADIFCIQESKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ + Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 46 E-----------------LEGYHQYWNYAEKKGYSGTAIFTKE--KPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGD 215
+GRVI EFE FY++ Y PN+ K E R W+ ++++ + KP+I CGD
Sbjct: 87 KEGRVITLEFENFYMVTVYTPNS--KNELARLDYRMVWEDAFRDYLKVLDEKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G +D +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNLRNAGFTEEERSKFTELLNAG-FVDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ + ++ WS + + RIDYF+VS +KD++ ++ + GSD
Sbjct: 189 FYPD-EVGAYSWWSYRFNARAKNAGWRIDYFLVSNSVKDKLEDAKIHSEVL------GSD 241
Query: 336 HCPVSLELS 344
HCPV L+++
Sbjct: 242 HCPVELKIN 250
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 135/271 (49%), Gaps = 39/271 (14%)
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 140
+ AA +K ++ ++L D +E KL L + L P ++ Y W S Y+GTA+
Sbjct: 11 LRAAVTKGFMESFEKLDADMFCLQETKLQLHQIELELPGYEQY--WNSAVKKGYSGTAIF 68
Query: 141 VKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK 196
+ +P V + + +GRVI AE++ FYL+ Y PN+ + E + R W+
Sbjct: 69 TR--VKPLNVIYGIGIEEHDQEGRVITAEYDNFYLVTCYTPNS--QRELARLEYRMTWED 124
Query: 197 RIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 255
+ ++L+ K P+I CGDLNV+H EID+ +P K + GFT
Sbjct: 125 AFRAYLLELDAKKPVILCGDLNVAHNEIDLKNP---------------KTNRKNAGFTDE 169
Query: 256 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELK 313
ER++ +L G D +R L+ D+ +SW + +GK R + + RIDYFI S L
Sbjct: 170 EREKMTELLNAG-FTDTFRKLY--PDVTDAYSW-WSYMGKARDRNVGWRIDYFITSARLD 225
Query: 314 DRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
I+ ++ +GSDHCPV LE++
Sbjct: 226 KDIVEAKIH------PDIFGSDHCPVELEIN 250
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK + + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTHL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 137/312 (43%), Gaps = 59/312 (18%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
S+K + +WN N L +K + P F + + + + D+I +QE ++
Sbjct: 2 SQKHTYRLASWNVNGLRAVMKKD-PNFIDVVQSLNVDIIGIQETKL-------------- 46
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKC-FQP-KKVSFS 153
+E I AL P Y WS A+ K Y+GTA+ K+ Q + S
Sbjct: 47 ---------QEGQI---ALDLP---GYTQTWSYAERKGYSGTAVFSKEAPLQTIHTIGCS 91
Query: 154 LEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 212
+GRV EF F+ +N Y PN+ K E R +WD+ + F+ K P+I
Sbjct: 92 AADNEGRVCALEFNDFWFVNVYTPNS--KNELARLDERMEWDEAYRSFLHTLDAKKPVIT 149
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGD N +HEEID+ +P N ++ GF+ ER F +L G D
Sbjct: 150 CGDFNCAHEEIDLKNP------------ATNHQN---AGFSDEERASFTKLLNTG-FTDT 193
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+R H D WS + R RIDYF+VS+ +K+++ + Y
Sbjct: 194 FRAAHPTL-TDAYSWWSYRMRSRERNAGWRIDYFLVSDRIKNQVSDARIHA------DVY 246
Query: 333 GSDHCPVSLELS 344
GSDHCPV L ++
Sbjct: 247 GSDHCPVGLTIT 258
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D+ +QE +M KD
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKMQ--------------KDQG 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
S F+ Y +W+ A+ K Y+G +L K +P +V++ +
Sbjct: 44 DFS---------------FQGYSEYWNSAEKKGYSGVVVLSK--IKPLQVTYDMGISHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I AE+E FYL+N Y PN K E + R +W+ + FV + KP++ CGD
Sbjct: 87 KEGRIITAEYERFYLVNVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + +L+ G ID +R
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSELLESG-FIDTFR- 187
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
H ++ +SW + +GK R RIDYF+ S L+ + ++ H +G
Sbjct: 188 -HFYPTLEGAYSW-WSYMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPH------IFG 239
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 240 SDHCPVGLSM 249
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 137/309 (44%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L V N F + D D LQE ++ A + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVNKN---FLDVFHELDADFFCLQETKLQAGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS----LE 155
+W+ A+ K Y+GTA+ K+ VS+ L
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFAKE--PALNVSYGMGIDLH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GR+I E+ F+L+ Y PN+ + E R +W++ ++ + KP+I CG
Sbjct: 86 DQEGRLITLEYPEFFLVTCYTPNS--QNELKRLDYRLQWEEAFYHYLEELKKQKPVIVCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + K + GFT+ ER F +L G ID +R
Sbjct: 144 DLNVAHQEIDLKNW---------------KTNQKNAGFTMEERTAFSHLLANG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ + E+ + WS + RIDYF+ S+ELK R+I ++ GS
Sbjct: 188 YFYPEQTGIYSW-WSYRFNARKNNAGWRIDYFLTSDELKPRLIDAKIH------TSIMGS 240
Query: 335 DHCPVSLEL 343
DHCPV L+L
Sbjct: 241 DHCPVELDL 249
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D+ LQE ++ + EL+ D
Sbjct: 1 MKLISWNVNGLRACVGKG---FLDYFKEQQADIFCLQETKLQ--------EGQIELELD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y +W+ A+ K Y+GTA+ K+ +P V + +
Sbjct: 49 --------------------GYHQYWNYAEKKGYSGTAIFTKE--KPISVHYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE FY++ Y PN+ +E+ R KW++ + ++L+ K P+I CGD
Sbjct: 87 KEGRVITLEFEKFYMITVYTPNS--QEKLARLDYRMKWEEDFKNYLLELDKKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER++ +L+ G +D++R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRKNAGFSDEEREKMTKLLESG-FVDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K D WS + + RIDYF+VS+ +K+ M+G I E GSD
Sbjct: 189 FYPNK-TDIYSWWSYRFSARAKNAGWRIDYFLVSDRIKEN-----MKGAEIHTE-ILGSD 241
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 242 HCPVLLNI 249
>gi|257783920|ref|YP_003179137.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
gi|257472427|gb|ACV50546.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
Length = 259
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 143/313 (45%), Gaps = 63/313 (20%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQ 95
S+ K ++WN N L +K P F+ T + DV ALQE ++ + D P Q
Sbjct: 2 SQTQEYKLISWNVNGLRAVLKKE-PSFTEIFETINADVFALQETKLQEGQVELDLPGYVQ 60
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKC-FQP-KKVSF 152
W+ AD K Y+GTA+ ++ Q +++
Sbjct: 61 T------------------------------WNYADRKGYSGTAVFSRETPLQVIRQIGC 90
Query: 153 SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 211
+ +GRV EFE F+ + Y PN+ K++ R +WD+ ++F+ + S KP+I
Sbjct: 91 PVADDEGRVCALEFEKFWFVCVYTPNS--KDQLARLDERLEWDQHYRDFLAELSKQKPVI 148
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
CGD NV+H EID+ +P N+++ GF+ ER+ F +L G D
Sbjct: 149 TCGDFNVAHNEIDLKNP------------SSNRQN---AGFSDEERESFTKLLDAG-FTD 192
Query: 272 AYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 330
+R+ H D+ +S WS + RIDYF+VS+ + +++ + + L
Sbjct: 193 TFRYRH--PDITGAYSWWSYRFNARKNNAGWRIDYFLVSDRIAEQVKSASI------LSE 244
Query: 331 FYGSDHCPVSLEL 343
YGSDHCP+ L +
Sbjct: 245 IYGSDHCPIELSI 257
>gi|402308513|ref|ZP_10827517.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
gi|400374964|gb|EJP27874.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
Length = 242
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 36/231 (15%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNT 174
F+ Y +W+ A+ K Y+GTA+ K +P V++ L +GRVI E E FYL+
Sbjct: 40 FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGLGIEEHDHEGRVITLEMEDFYLITV 97
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAA 233
Y PN+ ++E R W+ +++ K P+I CGDLNV+HEEID+ +P
Sbjct: 98 YTPNS--QDELRRLDYRMTWEDDFLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNP----- 150
Query: 234 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNP 292
K + GFT ER++ L G D++R+ + E+ +S WS
Sbjct: 151 ----------KTNRRNAGFTDEEREKMTITLNSG-FTDSFRYKYPEQ---VTYSWWSYRF 196
Query: 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ + RIDYF++S L+DR++ ++ YGSDHCPV L+L
Sbjct: 197 HAREKNAGWRIDYFLISNRLRDRLVDAKIHTE------VYGSDHCPVELDL 241
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 141/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ + G D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SEGQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 47 ------------------LKGYYQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE FY++ Y PN+ K+E R W+ ++++ K P++ CGD
Sbjct: 87 KEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ +++ +S WS + RIDYF+VS+ L+ ++ E+ GS
Sbjct: 189 FY--PNLEQVYSWWSYRANARKNNAGWRIDYFVVSKGLEKNLVDAEIHSQT------EGS 240
Query: 335 DHCPVSLEL 343
DHCPV L L
Sbjct: 241 DHCPVVLFL 249
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ +Q+ R+ P D P +Q
Sbjct: 8 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQ----- 59
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS--FSLEKT 157
+W+ A+ K YAGTA+ K+ +P V+ F + +
Sbjct: 60 -------------------------YWNYAERKGYAGTAVFTKE--KPITVANGFGVPEV 92
Query: 158 DG--RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
DG R I EF FY +N P +G K + F R W + + +V + KP+I G
Sbjct: 93 DGEGRSITLEFSNFYFINVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGG 150
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D++V+HE ID++ P+ ++ +PGFT ERK F +L G ID +R
Sbjct: 151 DMSVAHERIDLAEPD---------------DNHHRPGFTGIERKEFSELLNAG-FIDTFR 194
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ H ++ +S+ + R+DYF+VS L+DR+ ++ L GS
Sbjct: 195 YFHPDEAKYTYWSYRDKE-ARAENLGWRLDYFLVSNNLEDRLTNAKI------LSNIMGS 247
Query: 335 DHCPVSLEL 343
DHCP+ L++
Sbjct: 248 DHCPIELDV 256
>gi|282852873|ref|ZP_06262214.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|282555981|gb|EFB61602.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
Length = 254
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 144/309 (46%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ A+Q+ R+ P D P +Q
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEPNEVQIDLPGYYQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS--FSLEKT 157
+W+ A K YAGTA+ K+ +P V+ F + +
Sbjct: 53 -------------------------YWNYAKRKGYAGTAVFTKE--KPITVANGFGVPEV 85
Query: 158 DG--RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
DG R I EF FY ++ P +G K + F R W + + +V + KP+I G
Sbjct: 86 DGEGRSITLEFSNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D++V+H++ID++ P+ ++ GFT ERK F +L G ID +R
Sbjct: 144 DMSVAHDKIDLAEPD---------------DNHRHAGFTGIERKEFSELLNAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ H ++ +S+ + K G R+DYF+VS L+D++I ++ L GS
Sbjct: 188 YFHPDEAKYTYWSYREDARAKNIG--WRLDYFLVSNNLEDKMINAQI------LNNIMGS 239
Query: 335 DHCPVSLEL 343
DHCP+ L+L
Sbjct: 240 DHCPIELDL 248
>gi|160945969|ref|ZP_02093195.1| hypothetical protein FAEPRAM212_03502 [Faecalibacterium prausnitzii
M21/2]
gi|158443700|gb|EDP20705.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii M21/2]
gi|295103228|emb|CBL00772.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii SL3/3]
Length = 250
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 133/306 (43%), Gaps = 62/306 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + + F+ D D+ ++QE +M + AP+ + E
Sbjct: 1 MKLISWNVNGLRACLTHG---FAESFAALDADIFSVQETKMQPGQADFAPEGYTEYT--- 54
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--G 159
+S Y+GTA K LE+ D G
Sbjct: 55 -------------------------YSAEKKGYSGTACWCKTAPLAVTTGIGLEQHDHEG 89
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNV 218
RV+ E+ FYL+N Y PN+ ++ R +W+ + ++L K P+I CGDLNV
Sbjct: 90 RVLTLEYPGFYLVNCYTPNS--QDGLKRLDYRMEWEDAFRAYLLALDAKKPVILCGDLNV 147
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H E+D+ + AK N GFT ER + +L G D++R +H
Sbjct: 148 AHTEMDIKN------AKTNRM---------SAGFTDQERAKMTELLAAG-FADSFRVVHP 191
Query: 279 EKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+ + +S WS + + RIDYFIVS + DRI A E+ +GSDHC
Sbjct: 192 D---EVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADRIRAAEIHNE------IFGSDHC 242
Query: 338 PVSLEL 343
PV L++
Sbjct: 243 PVELQI 248
>gi|432942680|ref|XP_004083030.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Oryzias latipes]
Length = 311
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 62/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN + L VK +++ PDV+ LQE + KD P
Sbjct: 56 MKITSWNVDGLRAWVKKG---GLDWVREEAPDVLCLQETK---CAEKDLPAE-------- 101
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEK--- 156
+ ++ P K +W+++D K Y+G A+L K +P KV++ + K
Sbjct: 102 ----------ITSMPEYPHK----YWAVSDDKEGYSGVAMLSKT--EPLKVTYGIGKEEH 145
Query: 157 -TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GRVI AEF TF+L+ Y PN R+ WD Q ++ + KPL+ CG
Sbjct: 146 DKEGRVITAEFPTFFLVTAYVPNA--SRGLVRLDYRKTWDVDFQAYLTELDVQKPLVLCG 203
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ +P+ NK++ GFT ER+ F +L G +D++R
Sbjct: 204 DLNVAHQEIDLKNPK------------GNKKN---AGFTPEEREGFSQLLAAG-FVDSFR 247
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ F W+ + + R+DYF++S L + +++ + GS
Sbjct: 248 ELYPEQANAYTF-WTYMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAM------GS 300
Query: 335 DHCPVSLELS 344
DHCP++L L+
Sbjct: 301 DHCPITLHLA 310
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 65/305 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + + + D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FLDILKESNADIFCVQESKL------------QEGQIDLN 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
Y +W+ A+ K Y+GTA+ K+ +P +S +
Sbjct: 48 -----------------LDGYYDYWNYAEKKGYSGTAVFSKE--KPLNISLGIGIEEHDK 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRV+ EFE FYL+N Y PN+ +++ R W+ + ++ + + K +I CGDL
Sbjct: 89 EGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRHYLNELNKDKSVIVCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GF+ ER++FG +LK G ID YR+
Sbjct: 147 NVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFGELLKSG-FIDTYRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ K+ + WS + RIDYF+VS++ +DR++ + IE GSDH
Sbjct: 191 YPGKEGAYSW-WSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQ-IE-----GSDH 243
Query: 337 CPVSL 341
CPV L
Sbjct: 244 CPVEL 248
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D+ +QE +M KD
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKMQ--------------KDQG 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
S F+ Y +W+ A+ K Y+G +L K +P +V++ +
Sbjct: 44 DFS---------------FQGYSEYWNSAEKKGYSGVVVLSK--IKPLQVAYDMGISHHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GR+I AE+E FYL+N Y PN K E + R +W+ + FV + KP++ CGD
Sbjct: 87 KEGRIITAEYERFYLVNVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVICGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + +L+ G ID +R
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSELLESG-FIDTFR- 187
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
H ++ +SW + +GK R RIDYF+ S L+ + ++ H +G
Sbjct: 188 -HFYPTLEGAYSW-WSYMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPH------IFG 239
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 240 SDHCPVGLSM 249
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L F + T D D LQE +M
Sbjct: 2 IKLISWNVNGLRACCDKG---FRDIFTQLDADFFCLQETKM------------------- 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L F+ Y +W+ A+ K Y+GTA+ K QP +V++ L
Sbjct: 40 ---QEGQLDL-------SFEGYTSYWNYAEKKGYSGTAIFTKH--QPLQVTYGLGIDEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E E F+L+ Y PN+ ++ R WD + ++ + KP++ CGD
Sbjct: 88 HEGRVITLEMEKFFLVTVYTPNS--QDGLKRLDYRMTWDDDFRAYLQKLDQSKPVLVCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ ++N GFT ER++F +L G ID +R+
Sbjct: 146 LNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQLLLDAG-FIDTFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E+ + WS + + RIDYF+ S L D++ ++ +GSD
Sbjct: 190 FYPEQTNIYSW-WSYRFKAREKNAGWRIDYFLASASLADKLKEAKIHTE------IFGSD 242
Query: 336 HCPVSLEL 343
HCPV + +
Sbjct: 243 HCPVEVTV 250
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 145/307 (47%), Gaps = 63/307 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + D D+ +QE ++ QE + D +
Sbjct: 5 KLISWNVNGLRACVKKG---FLEYFKEIDADIFCIQESKL------------QEGQIDLE 49
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--G 159
Y +W+ A+ K Y+GTA+ K+ K +E+ D G
Sbjct: 50 -----------------LDGYTSYWNYAEKKGYSGTAVFTKEEPLTVKRGIGIEEHDNEG 92
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNV 218
RV+ E+ FYL+N Y PN+ K+ R W+ ++++ + KP+I CGDLNV
Sbjct: 93 RVLTLEYGNFYLVNVYTPNS--KQGLERLDYRMVWEDVFRKYLKELEKNKPVIICGDLNV 150
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+ +P N+++ GFT ER + +L+ G ID YR+ +
Sbjct: 151 AHKEIDLKNP------------TSNRKN---AGFTDEERSKISELLEAG-FIDTYRYFYP 194
Query: 279 EKD-MDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+K+ M +S+ N G RIDYF+VSE LKD+ ++ I +E GSDHC
Sbjct: 195 DKEGMYSWWSYRFNARANNAG--WRIDYFLVSESLKDK-----LEDAKIHME-VTGSDHC 246
Query: 338 PVSLELS 344
PV L ++
Sbjct: 247 PVELTIN 253
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 146/317 (46%), Gaps = 79/317 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSK-DAPKNHQEL 97
+KF++WN N L +K +F+TTF D D LQE +M A + D P HQ
Sbjct: 1 MKFISWNVNGLRAVLK------KDFMTTFEQFDADFFCLQETKMQAGQVELDLPGYHQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
+++ A+ K Y+G A+ K +P V++ +++
Sbjct: 53 ----------------------------YFNYAEKKGYSGAAIFTKH--EPLNVTYGIQQ 82
Query: 157 ----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGK 208
+GRVI E+ F+L+ Y PN+ +N +R R W+ + +V Q + K
Sbjct: 83 PEHDHEGRVITLEYPQFFLITCYTPNS-----QNQLKRLDYRMTWENAFRAYVQQLGTQK 137
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P+I+CGDLNV+HE ID+ + ++ + GF+ ER + +L+ G
Sbjct: 138 PVIFCGDLNVAHEAIDLKN---------------DRTNHKSAGFSDEERVQMTTLLQSG- 181
Query: 269 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 328
D +R+ + ++ D WS + RIDYFI S+EL+ +++ ++
Sbjct: 182 FTDTFRYFYPDQ-TDIYSWWSYRFHARDNNAGWRIDYFITSDELQPKLMDAKIHTE---- 236
Query: 329 EGFYGSDHCPVSLELSE 345
YGSDHCPV L+ +
Sbjct: 237 --IYGSDHCPVELDTQD 251
>gi|282882297|ref|ZP_06290928.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
gi|281297847|gb|EFA90312.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
Length = 275
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 144/325 (44%), Gaps = 75/325 (23%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + + + DPD+ A+QE ++P G K H+
Sbjct: 1 MKFISWNIDSLNAALTSSSNRAILTRAVLSSIRDEDPDLFAVQETKLPPTG---LSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV- 150
E+ + F++Y + A YAGT + KK + K
Sbjct: 58 EILE------------------KEFQDYSYVYVTSKEEARKSYAGTMIFYKKDLECKATY 99
Query: 151 -------SFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
S +E GR++ EF+ FY Y PN G + R+ WDK+ E+
Sbjct: 100 PEIGAPGSMDME---GRIVTLEFKDFYFSTVYTPNAG--DGLKRLSDRQVWDKKYLEYCQ 154
Query: 204 QCS-GKPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 260
+ KPL+ CGD NV+H+EID+++P F+A GFT ER F
Sbjct: 155 ELDKNKPLVLCGDFNVAHKEIDLANPNNNHFSA-----------------GFTDEERTGF 197
Query: 261 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 318
+L EG +D +R ++ D++ ++W I K RIDYF+VS+ +KDR+
Sbjct: 198 TNLL-EGGFVDTFRLIN--GDVEGKYTWWAQRIKTSKINNSGWRIDYFLVSQRIKDRVKK 254
Query: 319 CEMQGHGIELEGFYGSDHCPVSLEL 343
M G DH P+ LE+
Sbjct: 255 SHMMDSGQR------QDHTPIILEI 273
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 33/230 (14%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK----TDGRVILAEFETFYLLNT 174
+ Y+ W +D YAG ++VK +P V + ++ T+GR I E+ETF+++N
Sbjct: 1042 IEGYETLWCCSDKDGYAGVGIMVKD--KPLNVIYGIDSKEHDTEGRCITVEYETFFVVNV 1099
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 233
Y P+ G + +R W+++ ++F+ S KP+I CGD+NV+H+EID+++P
Sbjct: 1100 YVPHAG--RNLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANP----- 1152
Query: 234 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 293
K + GF++ ER A L G +D YR L+ EK+ F W
Sbjct: 1153 ----------KTNTNSAGFSVEERDGMTAFLGNG-YVDIYRHLYPEKEKAYTF-WIYMRN 1200
Query: 294 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ R+DYF+VS+ D + C+ H GSDHCP+SL +
Sbjct: 1201 ARPNNVGWRLDYFLVSQRFVDNV--CDNIIHS----DVMGSDHCPLSLHI 1244
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 137/308 (44%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK N FS D D LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK--T 157
+W+ A+ K Y+GTA+ K+ + +E+ T
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKEPALSVRYGLGIEEHDT 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GRVI E+ F+L+ Y PN+ + E R W+ ++ + KP+I CGDL
Sbjct: 88 EGRVITLEYPEFFLITCYTPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+ ID+ + K + GFT ER++F +L G D +R+
Sbjct: 146 NVAHKNIDIKNW---------------KTNQKSAGFTPEEREKFSTLLAAG-FTDTFRYF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ + + + WS + RIDYF+VS++L + ++ ++ I GSDH
Sbjct: 190 YPDAEGIYSW-WSYRFNARKNNAGWRIDYFVVSDDLNESLLDAKIHTDII------GSDH 242
Query: 337 CPVSLELS 344
CPV L+L+
Sbjct: 243 CPVELDLN 250
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K F +F T + DV LQE+++
Sbjct: 1 MKLISWNVNGLRAVMKKG---FMDFFTEVNADVFCLQEIKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
+E I M Y +W+ A K Y+GTA+ K+ +P V + L
Sbjct: 39 ----QEGQIEM------DLPGYYTYWNYAHKKGYSGTAIFTKQ--KPVAVQYGLGLEELD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
T+GR+I EF+++Y++ Y PN+ + R W++ I FV KP++ CGD
Sbjct: 87 TEGRIITLEFDSYYVITVYTPNS--QHGLLRLDYRLLWEEAILSFVKTLDNHKPVLLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P+ NK++ GFT ER + L+ G +D +R+
Sbjct: 145 LNVAHEEIDLKNPK------------ANKKN---SGFTPEERSKMTQFLESG-FVDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E++ + WS + + RIDYF+ S+ L E+Q I + +GSD
Sbjct: 189 FYPEEEGHYSW-WSYRSNCREKNVGWRIDYFLASQRL-----VPELQNAKIH-KDIWGSD 241
Query: 336 HCPVSLEL 343
HCPV L++
Sbjct: 242 HCPVELQI 249
>gi|374338532|ref|YP_005095247.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
gi|372284647|emb|CCF02936.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
Length = 276
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 141/321 (43%), Gaps = 66/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + +N + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSNSARAIMSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F Y++ W A YAGT L K P+ +S
Sbjct: 58 QILQDY------------------FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPRSIS 99
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ ++GR+I EF+ F++ Y PN G + R+ WD++ +++ +
Sbjct: 100 YPEIGAPDNMDSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAEL 157
Query: 206 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 158 DQVKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLL 202
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+G D +R++H D+ +SW + K RIDY++ S + D+I EM
Sbjct: 203 AKG-FTDTFRYIH--GDVPGVYSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMI 259
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 260 DSGAR------QDHTPIVLEI 274
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 143/308 (46%), Gaps = 66/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V N+ E F+ D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVGKNFKE--EFL-ALDADFFCLQETKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
LS P +++Y W+ AD K Y+GTA+ K +E+ D
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKHTPLSVSRGIGIEEHDHE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GRVI E FYL+ Y PN+ +++ R +W+ Q ++ KP+I CGD+N
Sbjct: 89 GRVITLEMADFYLVTVYTPNS--QDQLKRLPYRMQWETDFQSYLHSLDKHKPVIVCGDMN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+HEEID+ +P K + GF+ ER++ +L G D +RFL+
Sbjct: 147 VAHEEIDLKNP---------------KSNHFNAGFSDEEREKMTTLLSNG-FTDTFRFLY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
E+ +SW K R K + RIDYF++S+ L++ + ++ + GSD
Sbjct: 191 PEQ---VTYSWWSYRF-KAREKNIGWRIDYFLISDRLRESLEEAKIHTEIL------GSD 240
Query: 336 HCPVSLEL 343
HCPV + L
Sbjct: 241 HCPVEIIL 248
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 138/307 (44%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + + F D D+ LQE + K + P HQ
Sbjct: 1 MKFISWNVNGIRACITKG---FEERFHELDADIFCLQETKCQQGQVKLELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD- 158
+W+ A+ + Y+GTA+ K+ +E+ D
Sbjct: 53 -------------------------YWNYANRRGYSGTAIFTKREPLSAAYGIGIEEHDK 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
GRVI EF+ +Y + Y PN+ + E + R KW++ ++L+ KP+I CGDL
Sbjct: 88 EGRVITLEFDEYYFVTVYTPNS--QSELRRLEYRMKWEEDFLAYLLKLQEKKPVICCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER F L+ G ID +R+
Sbjct: 146 NVAHQEIDLKNP---------------KTNRKNAGFTDEERACFTRALESG-FIDTFRYF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K+ + WS + + RIDYF+VS LK+++ ++ G + GSDH
Sbjct: 190 YPDKEGVYSW-WSYRFRAREKNAGWRIDYFLVSPSLKEKLQDAKIHGEIM------GSDH 242
Query: 337 CPVSLEL 343
CPV L++
Sbjct: 243 CPVELDI 249
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 141/307 (45%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F +F + D+ +QE ++ +++ D
Sbjct: 1 MKLVSWNVNGIRACLAKG---FMDFFNSVSADIFCIQETKVQQG----------QVQLDL 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV----SFSLEKT 157
+ YQ W Y+GTAL ++ +P V +
Sbjct: 48 EGY------------------YQYWNYAIRKGYSGTALFTRE--KPLSVVDGIGMNEHDN 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GRV+ AE++ FYL+ Y PN+ + R KW+ +E++ + + KP+I CGDL
Sbjct: 88 EGRVLTAEYDKFYLVTVYTPNS--QRGLTRLDYRMKWEDDFREYLKRLDTTKPVIICGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +PE A + N GFT ER++ +++ G D++R+L
Sbjct: 146 NVAHREIDIKNPE---ANRRNA------------GFTDEEREKMTMLIQSG-FTDSFRYL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K D WS + + RIDYF+VS+ ++D+I M YGSDH
Sbjct: 190 YPDK-TDAYTWWSYMFNAREKNIGWRIDYFLVSDRIRDKIRDAGMYSE------IYGSDH 242
Query: 337 CPVSLEL 343
CPV LE+
Sbjct: 243 CPVFLEI 249
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 143/310 (46%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
K +WN L V EF I PD++ +QE + ++ D+
Sbjct: 354 FKISSWNVAGLRSWVGKGGLEF---IEHEKPDILCVQETKC----------TEDQMPDEA 400
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+ K Y +W +AG A+ KK P V++ L +
Sbjct: 401 RH----------------IKGYHPYWLCKPGGHAGVAIYSKKM--PFHVAYGLGDEEQDQ 442
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
DGR++ AE+E FYL+ Y PN G K + +R +W+++ +++ K P+I CGD+
Sbjct: 443 DGRLLTAEYEKFYLVCVYVPNAGRKL--VTLPKRLRWNEKFHQYLRDLDAKKPVILCGDM 500
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+++P+ NK++ GFT ER+ +L G +D +R L
Sbjct: 501 NVAHEEIDLANPKT------------NKKNA---GFTPEEREGMTELLSYG-FVDTFRKL 544
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ ++ F W+ +G R K + R+DYFI SE L ++ ++ +GS
Sbjct: 545 YPDRTGAYTF-WTY--MGGARAKNVGWRLDYFITSERLAGKVTDNVIRSQ------VFGS 595
Query: 335 DHCPVSLELS 344
DHCPV+L L+
Sbjct: 596 DHCPVTLFLN 605
>gi|441499473|ref|ZP_20981659.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
gi|441437006|gb|ELR70364.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
Length = 258
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 141/307 (45%), Gaps = 59/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L V+WN N L +K F + + DPD++ LQE T
Sbjct: 4 LSLVSWNVNGLRAIIKKG---FITSLKSLDPDILCLQE---------------------T 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
K E+ ++ L P +K Y + S Y+GTA+L KK +P +++ L
Sbjct: 40 KGQVEDIKTALQLL--PDYKAY-VNCSKLKKGYSGTAILSKK--EPLDITYDLGHEEHDQ 94
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI AEF+ F+L+N Y PN+G + N + R+ WD + KP++ CGDL
Sbjct: 95 EGRVITAEFDHFFLVNVYTPNSG--QGLNRLEYRQAWDVIFLNHLRSLEQRKPVVLCGDL 152
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ A AK N NK G+T E F + L+ G +D +R
Sbjct: 153 NVAHEEIDI------ARAKQN----YNKS----AGYTQQEIDGFKSYLEHG-FVDTFRHF 197
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
E+ W+ + R RIDYF+VS L ++ + + F+GSDH
Sbjct: 198 FPEEVKYT--YWNQMFNSRARNVGWRIDYFLVSPALLGQVKTAAIH------DQFHGSDH 249
Query: 337 CPVSLEL 343
CPV L L
Sbjct: 250 CPVELVL 256
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 70/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L ++ F +F D D+ ALQE ++ P + P HQ
Sbjct: 1 MKLISWNVNGLRACIQKG---FMDFFNEQDADIFALQETKLQPHQIELELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTDG 159
+W A+ K Y+GTA+ K+ +P V + ++ +G
Sbjct: 53 -------------------------YWHSAERKGYSGTAVFTKQ--KPLSVRYDFDEAEG 85
Query: 160 ------RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 212
RVI EFE FY + Y PN+ KEE R +W+ + + + + KP+++
Sbjct: 86 EHPKEGRVITLEFEQFYFVTAYVPNS--KEELARLDYRMQWEDAMARHLAKLNETKPVVY 143
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
GDLNV+ EEID+ +P K N + PGF+ ER++ +L G D
Sbjct: 144 TGDLNVAVEEIDLKNP------KTNHF---------NPGFSDQERQKMRDLLSLG-FADT 187
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+R L+ EK +S+ N K G RIDYFIVS+ L +++ + G +
Sbjct: 188 FRTLYPEKVEYSWWSYRFNSRAKNVG--WRIDYFIVSQRLMNQVKDSVIYGDIL------ 239
Query: 333 GSDHCPVSLEL 343
GSDHCPV +E+
Sbjct: 240 GSDHCPVGVEI 250
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 154/311 (49%), Gaps = 64/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN + L VK N +++ PDV+ LQE T
Sbjct: 55 MKITSWNVDGLRAWVKKN---GLDWVREEAPDVLCLQE---------------------T 90
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEK--- 156
K S EK + S P + + +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 91 KCS--EKALPAEITSMPEYPHK--YWAASDEKQGYSGVAMLCKT--EPLKVTYGIGKEEH 144
Query: 157 -TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GRVI AEF FYL+ TY PN+ + R+ WD+ + ++ + KPL+ CG
Sbjct: 145 DKEGRVITAEFPNFYLVTTYVPNS--SKGLVRLDYRKTWDEDFRAYLSELDMQKPLVLCG 202
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ +P+ NK++ GFT+ ER+ FG +L G D++R
Sbjct: 203 DLNVAHQEIDLKNPK------------GNKKN---AGFTVEEREGFGQLLGSG-FADSFR 246
Query: 275 FLHKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ E+ F ++ N GK G R+DYF++S L + +++ + G
Sbjct: 247 ELYPEQANAYTFWTYMMNSRGKNVG--WRLDYFLLSSSLLPGLCDSKIRSKAL------G 298
Query: 334 SDHCPVSLELS 344
SDHCP++L ++
Sbjct: 299 SDHCPITLHIA 309
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 144/307 (46%), Gaps = 63/307 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V + E+ D D+ +QE ++ QE + D K
Sbjct: 3 KLISWNVNGLRACVNKGFLEY---FKEADADIFCIQESKL------------QEGQIDLK 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKK--CFQPKKVSFSLEKTDG 159
+ Y+ +W+ A+ K Y+GTA+ K+ + S T+G
Sbjct: 48 -----------------LEGYKDYWNYAEKKGYSGTAVFTKEEPISVKNGIGISEHDTEG 90
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNV 218
RVI EF+ FYL+N Y PN+ K+ R W+ ++++ + KP+I CGDLNV
Sbjct: 91 RVITLEFKEFYLVNVYTPNS--KQGLERLDYRMVWEDVFRKYLKELEEKKPVIICGDLNV 148
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH- 277
+HE+ID+ +P K + GFT ER + +L+ G ID YR+ +
Sbjct: 149 AHEDIDLKNP---------------KANRKNAGFTDEERNKISELLEAG-FIDTYRYFYP 192
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+ + +S+ N G G RIDYF+ SE LKD+++ ++ + + GSDHC
Sbjct: 193 NTEGVYSWWSYRFNARGNNAG--WRIDYFLASESLKDKLVDAKIHMNVM------GSDHC 244
Query: 338 PVSLELS 344
PV + ++
Sbjct: 245 PVEVMVN 251
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK + + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTCL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 142/306 (46%), Gaps = 66/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F NF+ PD++ +QE ++ + +L D
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMNFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y +W+ A+ K Y+GTA+ K +P V +E ++
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAIFTK--IKPNNVILGMENSEHN 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
GRVI EF+ +YL+N Y PN+ + + R+KWD+ ++ + KP+++CGD
Sbjct: 87 NEGRVITLEFDEYYLVNVYTPNS--QRGLTRLEYRQKWDEDFLSYIKTLETKKPVVFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER F I+ G +D +R
Sbjct: 145 LNVAHKEIDLKNP---------------KTNVKNAGFTPEERNGFDNIVNSG-FLDTFRE 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E D +S+ N + R RIDYF +S+ L++ + + + GSD
Sbjct: 189 FNNEPDNYSWWSYRFN--ARARNIGWRIDYFCISKSLRNNLKDAYI------MPEVMGSD 240
Query: 336 HCPVSL 341
HCPV +
Sbjct: 241 HCPVGI 246
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 136/306 (44%), Gaps = 65/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L F + T + D LQE +M A G D
Sbjct: 1 MKLISWNVNGLRACCDKG---FRDAFTRLNADFFCLQETKMQA-GQLDLA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y +W+ A+ K Y+GTA+ + QP VS+ +
Sbjct: 47 ------------------FDGYTSYWNYAEKKGYSGTAIFTRH--QPLNVSYGMGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI E E FYL+ Y PN+ ++ R W+ + ++L+ K P++ CGD
Sbjct: 87 REGRVITLEMENFYLVTVYTPNS--QDGLKRLDYRMTWEDAFRRYLLELDAKKPVLVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER++F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRMNAGFTDQEREKFQTLLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E++ + WS + + RIDYF+ S L A +++ I E F GSD
Sbjct: 189 FYPEQEGIYSW-WSYRFRAREKNAGWRIDYFLASARL-----AGKLESAAIHTEIF-GSD 241
Query: 336 HCPVSL 341
HCPV +
Sbjct: 242 HCPVEV 247
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 147/310 (47%), Gaps = 64/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K +F + + D DV+ LQE T
Sbjct: 1 MKLVSWNVNGVRAAIKK---DFLQSMASLDCDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS--FSLEKTD 158
KA E+ ++ AL Y I+ + A K Y+GT+++ + QP V+ +E+ D
Sbjct: 37 KAQDEQ---VIEALCE--LNGYHIFTNSAVKKGYSGTSIITR--IQPIDVTKDMGIEEHD 89
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRV+ AEF YL+ Y PN+G + S+ R +WD ++ + KP++ CGD
Sbjct: 90 QEGRVLCAEFSDLYLVTVYTPNSGNDLKRLSY--RAQWDADFLSYIKKLEEKKPVVICGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LN +H +ID++ P+ PN G+T E ++ G +D +R+
Sbjct: 148 LNAAHRDIDLARPK------------PNYNK--SAGYTQQEIDGIDNLVAAG-YVDTFRY 192
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+H EK +SW G + R RIDYF+VS +L+ +I E+ +GS
Sbjct: 193 VHPEK---VKYSWWSYRAGARERNVGWRIDYFLVSPKLQGQIHDAEIH------NDIHGS 243
Query: 335 DHCPVSLELS 344
DHCPVS++LS
Sbjct: 244 DHCPVSVQLS 253
>gi|199436395|dbj|BAG70947.1| thermostable exonuclease III [Thermoplasma acidophilum]
Length = 250
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 136/302 (45%), Gaps = 58/302 (19%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N L VKN + + D IALQE K D+
Sbjct: 4 KFLSWNVNGLRAAVKNG---AVSVLKQDDYFGIALQET-----------------KADST 43
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGRVI 162
+ EE L L + P K Y+GT LV++ +P VS+ E +GR++
Sbjct: 44 SVPEEMYHLGYHLYNNPAKK---------KGYSGTMSLVRE--KPIAVSYGFENEEGRIL 92
Query: 163 LAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHE 221
EF+ FY +N Y PN + + + ++ E+ + KPLI CGD NV+HE
Sbjct: 93 NLEFDKFYFINVYFPNA--QHGLTRLDMKLDFGEKFLEYSNELRKKKPLIICGDFNVAHE 150
Query: 222 EIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD 281
EID++ P K++ GFT ER L G +D YR KE
Sbjct: 151 EIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG-YVDTYRIFMKEGG 194
Query: 282 MDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 341
+S+ N K G RIDYF+VS++++DR+ E+ LE GSDH PV+L
Sbjct: 195 HYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------LETVTGSDHAPVTL 246
Query: 342 EL 343
E+
Sbjct: 247 EV 248
>gi|399925203|ref|ZP_10782561.1| exodeoxyribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 254
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 148/312 (47%), Gaps = 69/312 (22%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELK 98
+ +K ++WN N L VK F + D D+ ALQE+++ + D P ++
Sbjct: 2 EEIKMISWNVNGLRAVVKKG---FMDEFKKLDADLFALQEIKLQEGQIEIDLPHYYE--- 55
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--- 154
F NY A+ K Y+GTA+ KK +P V++ +
Sbjct: 56 ---------------------FYNY------AEKKGYSGTAIFSKK--EPISVNYGIGID 86
Query: 155 -EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 212
+GRVI EFE FY + Y PN+ K E + R+ W+ + ++ + K +I
Sbjct: 87 EHDKEGRVITLEFENFYFVTCYTPNSKRKLERLDY--RQVWEDDFRNYLNELRKNKEVIL 144
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGDLNV+H+EID+++P N++ GFT ER++F +LK G ID
Sbjct: 145 CGDLNVAHKEIDLANP------------STNRK---SAGFTDEEREKFTELLKNG-YIDT 188
Query: 273 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R+ + D+ +S WS + R RIDYF+VSE L+ ++ ++ +
Sbjct: 189 FRYFY--PDLKDEYSWWSYFAKSRERNVGWRIDYFVVSEGLEKHLVDAKIHQEVM----- 241
Query: 332 YGSDHCPVSLEL 343
GSDHCPV L++
Sbjct: 242 -GSDHCPVELKI 252
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK + + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLK------TLLKDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 137/310 (44%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFQQEQADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL---- 154
+EE++ PF+ Y +W+ A K Y+GTA+ K+ +P VS+ +
Sbjct: 39 ---QEEQI---------PFQLEGYHAYWNFAQKKGYSGTAVFAKQ--EPLSVSYGIGQEE 84
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 213
+GRVI EF+TFYL+ Y PN+ + + R W+ ++ KP+I C
Sbjct: 85 HDQEGRVITLEFDTFYLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVILC 142
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H EID+ +P K + GFT ER +F +LK G ID +
Sbjct: 143 GDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKFSELLKNG-FIDTF 186
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R + +K + WS + RIDYF VSE LK+ + + + G
Sbjct: 187 RHFNPDKK-EAYTWWSYMFNARANNAGWRIDYFCVSESLKNEL------KDAMIYDQIMG 239
Query: 334 SDHCPVSLEL 343
SDHCPV LE+
Sbjct: 240 SDHCPVGLEI 249
>gi|295107237|emb|CBL04780.1| exodeoxyribonuclease III [Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 145/346 (41%), Gaps = 107/346 (30%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L K F + + D D++ALQE ++ +
Sbjct: 1 MRFISWNVNGLRAVQKKG---FEDIVCELDADIVALQETKLQEGQA-------------- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
L P ++ Y WS A+ K Y+GTA+ K+ QP +V L
Sbjct: 44 ------------TLDLPQYREY---WSYAEKKGYSGTAVFTKE--QPLQVLHGLGSDYLD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--------- 207
+GR++ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 87 AEGRIVALEFPQFWFVDVYTPNA--QNELARIAHRMEWDDAFRDF---CKGLEEGVLPAD 141
Query: 208 -----------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 238
KP++ CGD NV+H+EID+ +P
Sbjct: 142 VPVQRPAPGEGHVCISELPLTQPGETAAPKPVVMCGDFNVAHQEIDLKNPG--------- 192
Query: 239 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYR 297
PN+ G+ GF+ ER +F +L+ G +D +R LH D+ +S WS +
Sbjct: 193 ---PNR---GKAGFSDEERGKFTDLLEAG-FVDTFRRLH--PDVTGAYSWWSYRFKARQN 243
Query: 298 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
RIDYF+VSE L ++ + + + YGSDHCPV LEL
Sbjct: 244 NAGWRIDYFLVSESLAPKVASACI------YDEVYGSDHCPVGLEL 283
>gi|123487248|ref|XP_001324898.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
gi|121907789|gb|EAY12675.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
Length = 289
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 141/304 (46%), Gaps = 59/304 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN SL R K+N F+ +I + PD+I +QE + H ++K+
Sbjct: 9 IKIATWNVASLRARWKDN---FTFYINSSKPDIICIQETKF-----------HVDMKES- 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGRV 161
++ +K Y ++ + YAGT + K ++P V S DGR
Sbjct: 54 ----------LKNFKLDGYKGY--FFHAKKAGYAGTCIYTK--YKPVSVKRSFADPDGRC 99
Query: 162 ILAEFETFYLLNTYAPNNGWKEEENSFQRR-RKWDKRIQEFVLQCS-GKPLIWCGDLNVS 219
I EF+ FYL+NTY N G E+ + ++W+ +I+ +++ KP+IW GDLNV+
Sbjct: 100 ITMEFKNFYLINTYVVNAG--EDLGRLDYKIKEWNPKIRNHIMELEKKKPVIWTGDLNVA 157
Query: 220 HEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE 279
H+ ID+ E K+ GY T ERK F L EG ID YR LH E
Sbjct: 158 HKPIDIWQAE--GHEKIAGY-------------TDEERKWFDDFLNEGH-IDIYRELHPE 201
Query: 280 KDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR--IIACEMQGHGIELEGFYGSDHC 337
F++ G K +G RIDYFI + ++ I C ++G GSDH
Sbjct: 202 SHEFTFFNYRGQAKSKNQG--WRIDYFITGKGNIEKLGISDCVIEG------TIDGSDHQ 253
Query: 338 PVSL 341
PV L
Sbjct: 254 PVIL 257
>gi|418001612|ref|ZP_12641751.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
gi|410546206|gb|EKQ20470.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
Length = 252
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 135/308 (43%), Gaps = 70/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGMGVPEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
T+GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++CG
Sbjct: 86 DTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + +K + GFT ER F L +G ID +R
Sbjct: 144 DLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQL-DGGFIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + +S WS + RIDYF+ S + K I ++ L G
Sbjct: 188 NLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMG 238
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 239 SDHCPVEL 246
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 140/309 (45%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R FS+ D D LQE +M A G D
Sbjct: 1 MKLISWNVNGL--RACEG-KGFSDTFRELDADFFCLQETKMQA-GQLDLA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F+ Y+ +W+ A+ K Y+GTA+ K P V++ +
Sbjct: 47 ------------------FEGYESYWNYAEKKGYSGTAIFTKH--HPLSVTYGIGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI E E FYL+ Y PN+ ++ R W+ + ++ K P+I CGD
Sbjct: 87 HEGRVITLEMEDFYLVTCYTPNS--QDGLKRLDYRMTWENDFRAYLKGLDAKKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ ++N GFT ER++F +L G D++R+
Sbjct: 145 LNVAHQEIDLKNPK---TNRMNA------------GFTDQEREQFSTLLASG-FTDSFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ E+ +S WS + + RIDYF++S+ L++R+ + + GS
Sbjct: 189 KYPEQ---VTYSWWSYRFQARQKNAGWRIDYFVISDRLRERMDDARIHTQIL------GS 239
Query: 335 DHCPVSLEL 343
DHCPV L L
Sbjct: 240 DHCPVELTL 248
>gi|392947967|ref|ZP_10313585.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
gi|392436819|gb|EIW14725.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
Length = 254
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 135/308 (43%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D +QE ++ AG D
Sbjct: 1 MKLISWNVNGLRAAVKHG---FIDIFNEQDADFFCVQETKL-QAGQIDLD---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
F YQ +W+ A+ K Y+GTA+ K P V++ +
Sbjct: 47 ------------------FPGYQQYWNYAERKGYSGTAIFTKHT--PLNVTYGIGVPEFD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
T+GRVI E+ +Y+L Y PN+G E R+ W+ ++ S KPLI+CGD
Sbjct: 87 TEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQHWEDAFLTYINSLSANKPLIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HE ID+ + + + GFT ER +F +L G D +R
Sbjct: 145 LNVAHENIDLKNW---------------RSNHHSAGFTDEERGKFDRLLANG-YTDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ D WS + RIDYFI S++L +++ + L +GSD
Sbjct: 189 FYPDQ-TDIYSWWSYRGHARDNNSGWRIDYFITSQQLDGQLLNARI------LNDVFGSD 241
Query: 336 HCPVSLEL 343
HCPV L++
Sbjct: 242 HCPVELDI 249
>gi|299141239|ref|ZP_07034376.1| exodeoxyribonuclease III [Prevotella oris C735]
gi|298577199|gb|EFI49068.1| exodeoxyribonuclease III [Prevotella oris C735]
Length = 250
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 141/309 (45%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +FS T + D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFETLNADFFCLQETKM-QAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y +W+ AD K Y+GTA+ +K +P V++ +
Sbjct: 46 -----------------QFPGYTSYWNYADKKGYSGTAIYARK--EPIAVTYGIGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E++ F+L+ Y PN ++ R W+ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEYDNFFLVTVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDEQKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER++ +L G D +R
Sbjct: 145 LNVAHQEIDLKNP---------------KSNRRNAGFTDEEREKMTQLLSHG-FTDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++S+ L+ +++ I E F GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRAREKNAGWRIDYFLISDRLRP-----QLKDASIHTEIF-GS 239
Query: 335 DHCPVSLEL 343
DHCP+ ++L
Sbjct: 240 DHCPIEVDL 248
>gi|225159347|ref|ZP_03725644.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
gi|224802053|gb|EEG20328.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
Length = 259
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 137/315 (43%), Gaps = 68/315 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + ++ ++I D I LQE +K P + Q ++
Sbjct: 1 MKLVSWNVNGVRAVLQKG---LLDYIAASGADAICLQE-------TKCQPGDVQHVEWPA 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKK------CFQPKKVSFSL 154
Y W+ A + Y+GTA+ + P V+ +
Sbjct: 51 --------------------GYTAHWNAAQKRGYSGTAIFTRMGAGSSPALTPLAVTAGI 90
Query: 155 EK----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKP 209
+ T+GRV+ AEF FYL+N Y PN + E R++WD ++ + KP
Sbjct: 91 GRDEHDTEGRVLTAEFPDFYLVNAYVPNA--QPELARLPYRQRWDADFLAYLRGLETRKP 148
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
++ CGDLNV+HEEID++ P KE+ G PGF+ ER F L+ G
Sbjct: 149 VVMCGDLNVAHEEIDLARP---------------KENVGNPGFSNEERAGFREFLRAG-F 192
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
+D +R K +S+ GK G RIDYF+ S L+ R+ ++
Sbjct: 193 LDTFREFEKGPGHYSWWSYRAGARGKNVG--WRIDYFLASASLRPRLKRAWIE------P 244
Query: 330 GFYGSDHCPVSLELS 344
GSDHCP+ LEL+
Sbjct: 245 AVMGSDHCPIGLELA 259
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 140/313 (44%), Gaps = 65/313 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L ++ F++F + D+ +QE +M H E D
Sbjct: 1 MKLISWNVNGLRACMQKG---FADFFNREEADIFCVQETKM-----------HPEQADFA 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F YQ +W+ A+ K Y+GTA+ + P V + +
Sbjct: 47 ------------------FDGYQSFWNSAEKKGYSGTAVFTR--VPPLSVRYDMGEPEHT 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E E F+L+N Y PN+ + + R +W+ + ++L + KP++ CGD
Sbjct: 87 GEGRVITVESEAFFLVNVYTPNS--QRDLVRLDYRMRWEDAFRAYLLTLNRDKPVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H EID+ +P K + GFT ER++ +L+ G ID +R
Sbjct: 145 MNVAHREIDIKNP---------------KSNIHNAGFTPEERQKMTDLLEAG-FIDTFRA 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E+ D WS + R RIDYF+VS+ L+ ++ + GSD
Sbjct: 189 LYPEQK-DAYTWWSYMRKARERNAGWRIDYFLVSDRLRGQVEDSTIYAD------VPGSD 241
Query: 336 HCPVSLELSEASS 348
HCPV L L S
Sbjct: 242 HCPVGLLLHTGGS 254
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 145/305 (47%), Gaps = 65/305 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + + + D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FLDILKESNADIFCIQESKL------------QEGQIDLN 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
+ Y +W+ A+ K Y+GTA+ K+ +P +S +
Sbjct: 48 -----------------LEEYYDYWNYAEKKGYSGTAVFSKE--KPLNISLGIGIEEHDK 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRV+ EFE FYL+N Y PN+ +++ R W+ ++++ + + K +I CGDL
Sbjct: 89 EGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRDYLNELNKDKSVIVCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GF+ ER++F +LK G ID YR+
Sbjct: 147 NVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFDELLKSG-FIDTYRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K+ + WS + RIDYF+VS++ +DR++ + IE GSDH
Sbjct: 191 YPDKEGAYSW-WSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQ-IE-----GSDH 243
Query: 337 CPVSL 341
CPV L
Sbjct: 244 CPVEL 248
>gi|336429860|ref|ZP_08609818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001765|gb|EGN31900.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 252
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 146/313 (46%), Gaps = 69/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K V+WN N L + F +F D D+ +QE ++ S + P HQ
Sbjct: 1 MKLVSWNVNGLRACMGKG---FMDFFKEADADIFCIQESKLQEGQISLELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+W+ A K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAVKKGYSGTAIFTKE--EPLSVSYGLGLEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
+GRVI EF FY++ Y PN+ ++ R W++ +++ + K P+I+CG
Sbjct: 86 DQEGRVITLEFPDFYMVTVYTPNS--QDGLARLDYRMTWEEEFLKYLKKLEEKKPVIFCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ +P K + GFT ER++F +L+ G ID +R
Sbjct: 144 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFSVLLENG-FIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ + D+ +S WS + + RIDYF+VS +LK+R+ + + +G
Sbjct: 188 YFY--PDLKDAYSWWSYRFHAREKNAGWRIDYFLVSPQLKERL------EDAVIYKDVFG 239
Query: 334 SDHCPVSLELSEA 346
SDHCPV+L L EA
Sbjct: 240 SDHCPVALILKEA 252
>gi|392531481|ref|ZP_10278618.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 251
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 139/311 (44%), Gaps = 69/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L VK F + D D LQE ++ A + P HQ
Sbjct: 1 MKLISWNVNGLRAVVKKG---FIDIFNQLDADFFCLQETKLQAGQIDFELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK--- 156
+W+ A+ K Y+GTA+ K +P +V + L K
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFTKH--EPDEVFYGLGKEEH 85
Query: 157 -TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+GRVI + +Y++ Y PN+ + E R W++ ++ Q KP+I CG
Sbjct: 86 DQEGRVITLSYPDYYVVTCYTPNS--QNELKRLNYRMTWEEDFLAYLNQLDAEKPVIVCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HE ID+ + K + GFT ER +F L+ G ID +R
Sbjct: 144 DLNVAHENIDIKNW---------------KTNRKNAGFTDEERGKFTEFLENG-YIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ + E ++ +S WS + RIDYFIVSE L++++++ + L G
Sbjct: 188 YFYPE--LEGAYSWWSYRFNARANNAGWRIDYFIVSERLQEKLVSAAI------LNEVVG 239
Query: 334 SDHCPVSLELS 344
SDHCPV L+++
Sbjct: 240 SDHCPVELQIN 250
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385819687|ref|YP_005856074.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|385822845|ref|YP_005859187.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|417983078|ref|ZP_12623720.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|417989182|ref|ZP_12629696.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|417992549|ref|ZP_12632904.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|417995780|ref|ZP_12636067.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|417998717|ref|ZP_12638932.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|418004708|ref|ZP_12644721.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|418013374|ref|ZP_12653018.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|410528859|gb|EKQ03697.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|410533128|gb|EKQ07815.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|410536484|gb|EKQ11077.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|410539278|gb|EKQ13814.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|410540321|gb|EKQ14836.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|410548944|gb|EKQ23126.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|410555900|gb|EKQ29831.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
Length = 252
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 134/308 (43%), Gaps = 70/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGMGVPEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
T+GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++CG
Sbjct: 86 DTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + +K + GFT ER F L G ID +R
Sbjct: 144 DLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + +S WS + RIDYF+ S + K I ++ L G
Sbjct: 188 NLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMG 238
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 239 SDHCPVEL 246
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V+ F F + D D+ +QE +M
Sbjct: 1 MKFISWNVNGIRACVQKG---FLEFFSQADADIFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L S + Y +W+ A K Y+GTA+ K +P V + +
Sbjct: 39 ---QEGQL-------SLELEGYHQYWNYAVKKGYSGTAVFSK--IEPLSVVYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E+E FY + Y PN + E R KW+ + ++ + KP++ GD
Sbjct: 87 QEGRVITLEYEDFYFVTVYTPNA--QNELARLDYRMKWEDDFRAWLKKLEENKPVVVTGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+H+EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 MNVAHKEIDLKNP---------------KTNRKSAGFSDEERQKFTELLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ +++ + WS + + RIDYF VSE LKDR++ GI L GSD
Sbjct: 189 FYPDQEGIYSW-WSYRFRAREKNAGWRIDYFCVSECLKDRLVDA-----GI-LTDIMGSD 241
Query: 336 HCPVSLELS 344
HCPV LE++
Sbjct: 242 HCPVVLEMN 250
>gi|294790372|ref|ZP_06755530.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
gi|294458269|gb|EFG26622.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
Length = 276
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 142/322 (44%), Gaps = 66/322 (20%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KFV+WN +SL LL + + + + +P+VIA+QE ++PA G K H
Sbjct: 1 MKFVSWNIDSLNAALLGKSDRSVQSRQVLASIRGENPEVIAIQETKLPATGPS---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCF------ 145
+ ALS F +Y + W A YAGT L KK
Sbjct: 57 ----------------LTALSQF-FDDYDVHWRSSVEPARKGYAGTMCLSKKGLPLVAVT 99
Query: 146 QPKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+P+ S +GR+ EF FYL+N Y PN+G + R+ WD + ++ +
Sbjct: 100 EPRIHSPEPMDCEGRLQTLEFPDFYLVNVYTPNSG--DGLRRLSDRQLWDDAYRAYLTEL 157
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ CGD NV+H+EID++HP + GFT ER++F A+L
Sbjct: 158 DEAKPILACGDFNVAHQEIDLAHP---------------ASNHHSAGFTDEERQKFTALL 202
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D YR+LH + ++W K RIDY++VS L R+ M
Sbjct: 203 GAG-FTDTYRYLHPNQ--AGAYTWWAQRAVTSKANNSGWRIDYWLVSNRLNSRVKQSTMI 259
Query: 323 GHGIELEGFYGSDHCPVSLELS 344
G DH P+ L+++
Sbjct: 260 DTGDR------RDHAPILLDIT 275
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 139/305 (45%), Gaps = 65/305 (21%)
Query: 45 VTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKAS 104
++WN N L + F +F + D D+ +QE +M
Sbjct: 2 ISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM---------------------- 36
Query: 105 REEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDG 159
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +G
Sbjct: 37 QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHDKEG 87
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNV 218
RV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV
Sbjct: 88 RVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNV 145
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H EID+ +P K + GF+ ER++F +L G ID +R+ +
Sbjct: 146 AHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYP 189
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
K+ + WS + + RIDYF+ S LK R+ + + GSDHCP
Sbjct: 190 NKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCP 242
Query: 339 VSLEL 343
V LEL
Sbjct: 243 VGLEL 247
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K ++WN N L VK+ +F + D D+ ++QE ++ D P HQ
Sbjct: 1 MKLISWNVNGLRAVVKH---DFKDTFEKLDADIFSIQETKLQEGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---- 155
+++ AD K Y+GTA+ K+ +P + L+
Sbjct: 53 -------------------------YFNYADRKGYSGTAVFSKQ--EPLNIETGLDDDEF 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGD 215
+GR I E+ FYL+N+Y PN+ K + F R D + KP+I CGD
Sbjct: 86 NHEGRTITLEYPDFYLINSYTPNSQPKLKRLDF-RMGYNDAMWKHMQTLSKKKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ + +K + PGF+ ER +F +L G D +R+
Sbjct: 145 LNVAHNEIDIKN---------------DKTNHKNPGFSDEERNKFSELLDSG-FTDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
LH E + +S WS + RIDYF++S +D I ++ L YGS
Sbjct: 189 LHPE---EVKYSWWSYRFNARKNNAGWRIDYFVISNNGQDLIQNADI------LNDVYGS 239
Query: 335 DHCPVSLELS 344
DHCP+ L+L+
Sbjct: 240 DHCPIQLDLN 249
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 62/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N ++ F +F + D D+ +QE +M + +P+ +
Sbjct: 1 MKLISWNVNGFRACLQKG---FEDFFKSADADIFCIQETKMQPDQADFSPEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT---D 158
++ + S Y+GTA+ K +PK V++ L +
Sbjct: 51 ---------------------HKYFHSAVKKGYSGTAVYTKN--EPKAVTYGLNGAHTDE 87
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E++ FY + Y PN + E R +++ ++ ++ KP+I+CGDLN
Sbjct: 88 GRVITCEYDDFYFVCCYVPNA--QNELKRIDYRMEFEDDMRAYLCGLDKLKPVIYCGDLN 145
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+HEEID+ +P K + G GF+ ER +F +L G D +R L+
Sbjct: 146 VAHEEIDLKNP---------------KSNVGNAGFSDQERGKFTELLAAG-FADTFRRLY 189
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + WS + RIDYF+VSE L D++ G L GSDHC
Sbjct: 190 PETTGVYSW-WSYRFNARKNNAGWRIDYFVVSERLMDKV------GDSKILTDVMGSDHC 242
Query: 338 PVSLELS 344
PV L+++
Sbjct: 243 PVQLDIT 249
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 158/335 (47%), Gaps = 67/335 (20%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
P L D T+ + N+K +WN + L VK + +++ +PDV+
Sbjct: 45 PILYEDPPDKMTSRDGRDANTK-----ITSWNVDGLRAWVKK---KGLDWVREENPDVLC 96
Query: 77 LQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--Y 134
LQE + K P + + ++ P+K +W+ +D K Y
Sbjct: 97 LQETK---CAEKSLPAD------------------ITSMPEYPYK----YWAGSDDKEGY 131
Query: 135 AGTALLVKKCFQPKKVSFSLEK----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 190
+G A+L K +P KV++ + K +GRVI AEF F+L+ Y PN+G
Sbjct: 132 SGVAMLCKT--EPVKVTYGIGKEEHDKEGRVITAEFPGFFLVTAYVPNSG--RGLVRLDY 187
Query: 191 RRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 249
R+ WD + ++ + KP++ CGDLNV+H+EID+ +P+ NK++
Sbjct: 188 RKTWDADFRTYLSELDVQKPVVLCGDLNVAHQEIDLKNPK------------GNKKN--- 232
Query: 250 PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVS 309
GFT ER+ FG +L+ G +D++R L+ E+ F W+ + + R+DYF++S
Sbjct: 233 AGFTAEEREGFGQLLEAG-FVDSFRELYPEQSHAYSF-WTYMMNARDKNVGWRLDYFVLS 290
Query: 310 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
L + +++ GSDHCP++L ++
Sbjct: 291 SSLLPGLCDSKIRNQ------VKGSDHCPITLHMA 319
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 141/309 (45%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T+ + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFTSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ ++ FK Y +W+ A K Y+G K +P VS+ +
Sbjct: 39 ---QQEQ-------NTFDFKGYFDFWNCAIKKGYSGVVTFSKT--EPLNVSYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRV+ EF+ FYL+N Y PN+ + + R W+ ++F+ KP+I CGD
Sbjct: 87 TEGRVVTCEFDKFYLVNVYTPNS--QRALARLEYRMSWEVEFRKFLKNLELQKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R
Sbjct: 145 LNVAHNEIDLENP---------------KANRKNAGFSDEEREKFSELLNAG-FIDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S+ LK + ++ E GSD
Sbjct: 189 FYPTKEKAYTW-WSYMQQARDKNIGWRIDYFLCSKSLKTELKDAKI------YENILGSD 241
Query: 336 HCPVSLELS 344
HCPV LEL+
Sbjct: 242 HCPVGLELA 250
>gi|281423696|ref|ZP_06254609.1| exodeoxyribonuclease III [Prevotella oris F0302]
gi|281402248|gb|EFB33079.1| exodeoxyribonuclease III [Prevotella oris F0302]
Length = 250
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 140/309 (45%), Gaps = 68/309 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +FS T + D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFETLNADFFCLQETKM-QAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y +W+ AD K Y+GTA+ +K +P V++ +
Sbjct: 46 -----------------QFPGYTSYWNYADKKGYSGTAIYARK--EPIAVTYGIGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E++ F+L+ Y PN ++ R W+ Q ++ + KP+I CGD
Sbjct: 87 HEGRVITLEYDNFFLVTVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDEQKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + +L G D +R
Sbjct: 145 LNVAHQEIDLKNP---------------KSNRRNAGFTDEERDKMTQLLSHG-FTDTFRT 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ +S WS + + RIDYF++S+ L+ +++ I E F GS
Sbjct: 189 LYPEQ---VTYSWWSYRFRAREKNAGWRIDYFLISDRLRP-----QLKDASIHTEIF-GS 239
Query: 335 DHCPVSLEL 343
DHCP+ ++L
Sbjct: 240 DHCPIEVDL 248
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 65/328 (19%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSL--LLRVKNNWPE----FSNFITTFDPDVIALQEVR 81
+T S S+K+ +K ++WN N L ++ KN E + + D DV+ LQE +
Sbjct: 24 STMRPSSPPSEKNLVKVISWNVNGLRACMKRKNELEEEGSVLARLANSEDFDVLCLQETK 83
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTAL 139
+ KD Q++ S +W+ + SK Y+G AL
Sbjct: 84 LQ---EKDVEAIKQKILGGYSNS---------------------FWTCSSSKLGYSGCAL 119
Query: 140 LVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 195
+ + +P V++ L +GRV+ AEF+TF+L++ Y PN+G + E ++ R +WD
Sbjct: 120 ISR--IKPVSVTYGLGISQHDGEGRVVTAEFDTFFLVSVYVPNSGQRLERLTY-RTTEWD 176
Query: 196 KRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 254
++L+ KP+I GDLN +HEEID+ P+ NK GFT
Sbjct: 177 PAFSTYLLELEKRKPVIVTGDLNCAHEEIDIYDPD------------GNKR---SAGFTC 221
Query: 255 AERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELK 313
ER F + L+D +R K+ + GF+ WS + + K R+DYF+VS+ L
Sbjct: 222 EERTSFQTNFIDKGLVDTFR---KQHPLAVGFTYWSYRSNARPQNKGWRLDYFLVSQGLV 278
Query: 314 DRIIACEMQGHGIELEGFYGSDHCPVSL 341
+ L GSDHCP+ L
Sbjct: 279 SNV------ADSYVLPQLDGSDHCPIGL 300
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 133/287 (46%), Gaps = 62/287 (21%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M ++E+ ++ FK
Sbjct: 5 FMDFFNSVDADVFCIQESKM----------------------QQEQ-------NTFEFKG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----KTDGRVILAEFETFYLLNTYAP 177
Y +W+ A K Y+G KK +P VS+ ++ +GRVI EFE+FYL+N Y P
Sbjct: 36 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTP 93
Query: 178 NNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 236
N+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 94 NS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------- 143
Query: 237 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 296
K + GF+ ERK+F +L G ID +R+ + K+ + WS +
Sbjct: 144 -------KTNRKNAGFSDEERKKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARD 194
Query: 297 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 195 KDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|293115606|ref|ZP_05792271.2| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809044|gb|EFF68249.1| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 237
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 138/285 (48%), Gaps = 62/285 (21%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D D+ LQE+++ + G + K +N
Sbjct: 5 FMDFFDSVDADIFCLQEIKL-SEGQIEWNK----------------------------EN 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--GRVILAEFETFYLLNTYAPNN 179
Y +W+ A+ K Y+GTA+ K+ K +++ D GRVI EFE FY++ Y PN+
Sbjct: 36 YYSYWNYAEKKGYSGTAVFSKEKPLSVKYGIGIDEHDHEGRVITLEFENFYMVTVYTPNS 95
Query: 180 GWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 238
+ E + R KW+ + F+ KP++ GD+NV+H+EID+ +P
Sbjct: 96 --QRELTRLEYRMKWEDDFRNFLNDLRKTKPVVVTGDMNVAHKEIDLKNP---------- 143
Query: 239 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 298
K + GFT ER++ +L G ID +R+ + D++ +SW + + K R
Sbjct: 144 -----KTNRKNAGFTDEERQKMTELLDSG-FIDTFRYFY--PDVEQKYSW-WSYMFKSRE 194
Query: 299 KRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 341
K RIDYF+ S+EL+DR+I+ E+ + GSDHCP+ L
Sbjct: 195 KNAGWRIDYFLASKELEDRLISAEIHDKVL------GSDHCPIEL 233
>gi|409996804|ref|YP_006751205.1| exodeoxyribonuclease [Lactobacillus casei W56]
gi|406357816|emb|CCK22086.1| Exodeoxyribonuclease [Lactobacillus casei W56]
Length = 290
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 134/308 (43%), Gaps = 70/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 39 MKLISWNVNGLRAVLK---KDFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 90
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 91 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGMGVPEH 123
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
T+GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++CG
Sbjct: 124 DTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCG 181
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + +K + GFT ER F L G ID +R
Sbjct: 182 DLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFR 225
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + +S WS + RIDYF+ S + K I ++ L G
Sbjct: 226 NLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMG 276
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 277 SDHCPVEL 284
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 145/314 (46%), Gaps = 74/314 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F+ + D D I LQE T
Sbjct: 1 MKIISWNVNGIRAVMGKG---FAESLEKLDADCILLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV--SFSLEKTD 158
KA ++ + ++ S Y I+ + A K Y+G ALL K+ +P ++ +++ D
Sbjct: 37 KAQDDQVQTALESIDS-----YHIYSNSAGRKGYSGVALLTKQ--EPIQILQDIGIDEHD 89
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
GRVI AEFE F LLN Y PN+G E+ R+ WDK + + Q S KPLI CGD
Sbjct: 90 QEGRVIAAEFENFILLNVYVPNSG--EKLVRLDYRKIWDKELLAYFQQLNSRKPLIACGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
NV+H+EID++ P+ A N G+T E +L+ G +D +R
Sbjct: 148 FNVAHQEIDIARPK----ANYN----------KSAGYTQTEIDGISRMLEAG-FVDTFRH 192
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEEL----KDRIIACEMQGHGIELE 329
LH E +SW G R K + RIDY + S+ L K+ IA ++
Sbjct: 193 LHPET---VAYSWWSYRAGA-RAKNIGWRIDYVLTSQALIGKVKNAFIAPDI-------- 240
Query: 330 GFYGSDHCPVSLEL 343
+GSDHCPV +E+
Sbjct: 241 --FGSDHCPVGIEI 252
>gi|451821030|ref|YP_007457231.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787009|gb|AGF57977.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 252
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 140/307 (45%), Gaps = 63/307 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L F +F D D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACAGKG---FLDFFKEVDADIFCIQESKL------------QEGQIDL- 46
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKK--CFQPKKVSFSLEKTDG 159
+ Y+ +W+ A+ K Y+GTA+ K+ K + S +G
Sbjct: 47 ----------------DLEGYKSYWNYAEKKGYSGTAVFTKEEPISVKKGIGISEHDNEG 90
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNV 218
RVI AE++ FYL+ Y PN+ K+ R W+ ++++ + KP+I CGDLNV
Sbjct: 91 RVITAEYDDFYLVTVYTPNS--KQALERLDYRMVWEDVFRKYLKELEEKKPVIVCGDLNV 148
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+ +P K + GFT ER + +L+ G ID YR H
Sbjct: 149 AHKEIDLKNP---------------KANRRNAGFTDEERDKMSELLEAG-FIDTYR--HF 190
Query: 279 EKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
D++ +S WS + RIDYF+ SE LKD++ A ++ + GSDHC
Sbjct: 191 YPDVEGVYSWWSYRFNARANNAGWRIDYFLTSESLKDKLEAAKIHTEVM------GSDHC 244
Query: 338 PVSLELS 344
PV L ++
Sbjct: 245 PVELVIN 251
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 143/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F + D D+ LQE ++ + HQ
Sbjct: 1 MKLISWNVNGLRAAVTKG---FIDSFNELDADIFCLQETKL---------QPHQ------ 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTD- 158
L P ++ Q W S Y+GTA+ + +P V+ +E+ D
Sbjct: 43 -----------IELELPGYE--QFWNSAVKKGYSGTAVFTR--IKPIAVTNGIGIEEHDQ 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CGDL
Sbjct: 88 EGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRAYLLELDKKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GF+ ER + +L+ G D +R+L
Sbjct: 146 NVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLESG-FTDTFRYL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D +SW + +GK R + + RIDYFI S+ L D+I ++ + +GS
Sbjct: 190 Y--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKRLDDKIKEAKIH------QQIFGS 240
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|10640846|emb|CAC12624.1| probable apurinic/apyrimidinic endonuclease [Thermoplasma
acidophilum]
Length = 241
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 120/250 (48%), Gaps = 38/250 (15%)
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 154
QE K D+ + EE L L + P K Y+GT LV++ +P VS+
Sbjct: 27 QETKADSTSVPEEMYHLGYYLYNNPAKK---------KGYSGTMSLVRE--KPIDVSYGF 75
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 213
E +GR++ EF+ FY +N Y PN + + +D++ E+ + KPLI C
Sbjct: 76 ENEEGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFDEKFLEYSNELRKKKPLIIC 133
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GD NV+HEEID++ P K++ GFT ER L G +D Y
Sbjct: 134 GDFNVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG-YVDTY 177
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R KE +S+ N K G RIDYF+VS++++DR+ E+ LE G
Sbjct: 178 RIFMKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------LETVTG 229
Query: 334 SDHCPVSLEL 343
SDH PV+LE+
Sbjct: 230 SDHAPVTLEV 239
>gi|90962461|ref|YP_536377.1| exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|301299216|ref|ZP_07205503.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821655|gb|ABE00294.1| Exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|300853176|gb|EFK80773.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 275
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 142/322 (44%), Gaps = 67/322 (20%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+K ++WN +SL R K + + I +PD+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPT---KKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
Q + + F +Y+I W A YAGT L K P
Sbjct: 57 Q------------------TILAEQFPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPTIS 98
Query: 151 SFSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
++ ++GR+I EF++FY+ Y PN G + R+ WD++ ++++
Sbjct: 99 YPEIDAPEPMDSEGRIITLEFDSFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KPL+ GD NV+H+EID++HP + GFT ER F +L
Sbjct: 157 DQNKPLLSSGDFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+G D +R++H D+ +SW + K RIDY++ S + D+I+ EM
Sbjct: 202 NKG-FTDTFRYVH--GDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM- 257
Query: 323 GHGIELEGFYGSDHCPVSLELS 344
L+ DH P+ LE++
Sbjct: 258 -----LDSGERRDHTPIVLEIN 274
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 65/311 (20%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
++ +K ++WN N L ++ F +F D D+ +QE ++ QE +
Sbjct: 2 ENTMKLISWNVNGLRACIQKG---FLDFFHETDADIFCIQESKL------------QEGQ 46
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--- 154
D P Y +W+ A K Y+GTA+ KK +P V++ +
Sbjct: 47 IDL-----------------PLPGYFSYWNYAKKKGYSGTAIFTKK--EPLNVTYGIGIE 87
Query: 155 -EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 212
+GRVI E+ FY++ Y PN+ + E R +W+ + ++ + G KP+I
Sbjct: 88 EHDKEGRVITLEYPDFYMVTCYTPNS--QNELARLPYRMQWEDDFRAYLKRLDGSKPVIL 145
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGDLNV+HEEID+ +P K + GF+ ER++ +L G D
Sbjct: 146 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEEREKMTKLLDAG-FTDT 189
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+R+ + + + + WS + + RIDYFI S+ + D++ ++ +
Sbjct: 190 FRYFYPDTEQIYSW-WSYRFRAREKNAGWRIDYFITSKRMNDKLTGAKIH------TDVF 242
Query: 333 GSDHCPVSLEL 343
GSDHCPV L++
Sbjct: 243 GSDHCPVELDI 253
>gi|417838206|ref|ZP_12484444.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761749|gb|EGP13018.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 254
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ +Q+ R+ P D P +Q
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS--FSLEKT 157
+W+ A+ K YAGTA+ K+ +P V+ F + +
Sbjct: 53 -------------------------YWNYAERKGYAGTAVFTKE--KPITVANGFGVPEV 85
Query: 158 DG--RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
DG R I EF FY +N P +G K + F R W + + +V + KP+I G
Sbjct: 86 DGEGRSITLEFSNFYFINVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D++V+HE ID++ P+ ++ +PGFT ERK F +L G ID +R
Sbjct: 144 DMSVAHERIDLAEPD---------------DNHHRPGFTGIERKEFSELLNAG-FIDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ H ++ +S+ + R+DYF+VS L+D++ ++ L GS
Sbjct: 188 YFHPDEAKYTYWSYRDKE-ARAENLGWRLDYFLVSNNLEDKLTNAKI------LSNIMGS 240
Query: 335 DHCPVSLEL 343
DHCP+ L++
Sbjct: 241 DHCPIELDV 249
>gi|336399679|ref|ZP_08580479.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
gi|336069415|gb|EGN58049.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
Length = 267
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 141/323 (43%), Gaps = 79/323 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPE--------FSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
+KF++WN N L VK + F + D D LQE +M K
Sbjct: 1 MKFISWNVNGLRACVKPKTDDEGNVKSKGFEAYFKDLDADFFCLQETKMQ--------KG 52
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+L+ F YQ +W+ A+ K Y+GTA+ + P V +
Sbjct: 53 QLDLQ---------------------FDGYQSYWNYAERKGYSGTAIYTRHT--PLSVVY 89
Query: 153 SL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ-----EFVL 203
+ +GRVI E FYL+ Y PN+ +E E + + R+ R+Q L
Sbjct: 90 GMGIEEHGHEGRVITMEMPEFYLVCVYTPNS--QEAETTGGKPRRLPYRMQWEDDFRAYL 147
Query: 204 QC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 261
Q KP+I CGD+NV+HEEID+ +P+ LN GFT ER +
Sbjct: 148 QALDQKKPVIVCGDMNVAHEEIDIKNPK---TNHLNA------------GFTDEERDKMT 192
Query: 262 AILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G D++R LH + + +S WS + RIDYF+ S+ L+D I
Sbjct: 193 TLLDSG-FTDSFRALHPD---EVTYSWWSYRFRSREHNTGWRIDYFLTSDRLRDHIT--- 245
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
G I E YGSDHCP+ L+L
Sbjct: 246 --GASIHTE-IYGSDHCPIELDL 265
>gi|256847688|ref|ZP_05553133.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256715377|gb|EEU30353.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 275
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 144/321 (44%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNF---ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ L E + I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRDVLHKIADLVPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ ++ L F +YQ+ W A YAGT L + PK +S
Sbjct: 54 ----------KKHFTVLNEL----FPDYQVAWRSSVEPARKGYAGTMYLYRTGLTPK-IS 98
Query: 152 F----SLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + E D GR+I EF F++ Y PN+G R+ WD R +E++ Q
Sbjct: 99 YPQIGAPEPMDNEGRMITLEFPYFFVTEVYTPNSG--TGLRRLAERQIWDDRYREYLQQL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP+I GD NV+HE ID++HPE + GFT ER+ F +L
Sbjct: 157 DQQKPVIASGDFNVAHEPIDLAHPE---------------NNHHSAGFTDEEREHFTKLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
K G D++R LH E+ +SW + K RIDY++VS+ + D+++ M
Sbjct: 202 KAG-FTDSFRHLHPEE--KGAYSWWAQRVITSKQNNSGWRIDYWLVSDRIADKVVKSSMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 259 DTGAR------RDHTPIELDI 273
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 129/305 (42%), Gaps = 59/305 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L +K F T D D +QE +M + AP+ + E
Sbjct: 1 MKFVSWNVNGLRACLKKG---FEETFRTLDADFFCIQETKMQPGQADFAPEGYTEYI--- 54
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF--SLEKTDG 159
+S Y+GTA+ + + L +G
Sbjct: 55 -------------------------YSADKKGYSGTAIWARTPALSVRYGLEEDLHNHEG 89
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNV 218
R I E+ FYL+N Y PN+ + E R +W+ ++ ++ KP+I CGDLNV
Sbjct: 90 RAITLEYPDFYLVNLYVPNS--QNELARIDYRMQWEDDLRRYLQALDAQKPVILCGDLNV 147
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H EID+ +P PN+ G GF+ ER + +L G D +R LH
Sbjct: 148 AHTEIDLKNP------------GPNR---GAAGFSDQERGKLDELLAAG-FTDTFRHLHP 191
Query: 279 EKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCP 338
+ + WS + R RIDYF+VS L +I ++ L GSDHCP
Sbjct: 192 DATGIYSW-WSMRFRARERNAGWRIDYFLVSNRLAPQIRKADI------LMDILGSDHCP 244
Query: 339 VSLEL 343
V+LEL
Sbjct: 245 VTLEL 249
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 141/307 (45%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTD- 158
+ E++ +L P ++ Y W S Y+GTA+ + +P V+ +E+ D
Sbjct: 39 ---QPEQI----SLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGIGIEEHDQ 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I CGDL
Sbjct: 88 EGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAWEDAFRNYLLELDKKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GF+ ER + +L G D +R L
Sbjct: 146 NVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDTFRHL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ + + WS + R RIDYFI S+ L D+I ++ + +GSDH
Sbjct: 190 YPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGSDH 242
Query: 337 CPVSLEL 343
CPV L++
Sbjct: 243 CPVELDI 249
>gi|418007606|ref|ZP_12647486.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
gi|410548624|gb|EKQ22818.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
Length = 252
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 133/308 (43%), Gaps = 70/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGMGVPEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
T+GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++CG
Sbjct: 86 DTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + +K + GFT ER F L G ID +R
Sbjct: 144 DLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + +S WS + RIDYF+ S K I ++ L G
Sbjct: 188 NLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRNFKPYIQDAKI------LTDIMG 238
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 239 SDHCPVEL 246
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 139/313 (44%), Gaps = 75/313 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK+ F+TTF D D +QE ++ A +++
Sbjct: 1 MKLISWNVNGLRAAVKHG------FVTTFNELDADFFCVQETKLQAG----------QIE 44
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE-- 155
D F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 45 LD-------------------FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGIGVP 83
Query: 156 --KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 212
+GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPLI+
Sbjct: 84 EFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPLIF 141
Query: 213 CGDLNVSHEEIDVS--HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 270
CGDLNV+HE ID+ H +A GFT ER +F +L G
Sbjct: 142 CGDLNVAHENIDLKNWHSNHHSA-----------------GFTDEERTKFDRLLAAGYTD 184
Query: 271 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 330
F + D+ +S+ G+ G RIDYFI S++L +++ +
Sbjct: 185 TFRHFYPDQTDIYSWWSYRGHARDNNSG--WRIDYFITSQQLDSQLLNARIHNE------ 236
Query: 331 FYGSDHCPVSLEL 343
+GSDHCPV L++
Sbjct: 237 IFGSDHCPVELDI 249
>gi|418962582|ref|ZP_13514438.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383345371|gb|EID23497.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 275
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 140/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D DVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADVIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F S +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTAL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVSKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|417002268|ref|ZP_11941657.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325479409|gb|EGC82505.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 273
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 143/323 (44%), Gaps = 71/323 (21%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N S I D DVIALQE ++P +G K H+
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAVMSREVLETIKREDADVIALQETKLPKSGPS---KKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQ----- 146
E KL + F +Y W+ A YAGT L KK
Sbjct: 58 E-----------KL-------AEFFPDYDYVWTCSCEGARKSYAGTMTLYKKGLDVTETF 99
Query: 147 PKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 203
PK + +GR++ EF+ FY Y PN G N R R+ WD++ +++
Sbjct: 100 PKIDAPGTMDFEGRIVTLEFDDFYFTQVYTPNAG-----NGLVRLADRQIWDEKYADYLE 154
Query: 204 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
KP+I GD NV+H ID++HPE N ++ PGFT ER+ F
Sbjct: 155 GLDKIKPVIASGDFNVAHTPIDLAHPE-------NNHI--------SPGFTDEEREGFTR 199
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G D +R H KD++ ++W + K RIDYF+VS+ L +R+ +
Sbjct: 200 LLARG-FTDTFR--HLNKDLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDRLMERVKSST 256
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
+ G DH P+ LE+
Sbjct: 257 IINSGDR------QDHTPIMLEI 273
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P V++ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVNYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK + + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTCL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|395244636|ref|ZP_10421596.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483087|emb|CCI82604.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 275
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 137/320 (42%), Gaps = 65/320 (20%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL L N E + DPDVIA+QE ++ A G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSNRAQETRQVLAAIKEKDPDVIAIQETKLRATGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E KL F Y W A YAGT L K + PK
Sbjct: 58 E-----------KLAEF-------FPEYSYVWRSSQEPARKGYAGTMFLYKNTYDPKVTY 99
Query: 152 FSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++ +GR+I EF+ Y+ Y PN+G E R+ WD++ + ++ +
Sbjct: 100 PKIDAPEPMDDEGRIITLEFDNCYVSQVYTPNSG--NELRRLDDRQIWDEKYRLYLQELD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+H ID+ HP+ + GFT ER+ F A+L
Sbjct: 158 KNKPVIASGDYNVAHTPIDLKHPQ---------------NNHHNAGFTDEERRDFTALLD 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
G D +R +H +++ +SW + K RIDY+IVS + D++ EM
Sbjct: 203 TG-FTDTFRKVH--GNIEGVYSWWAQRVRTSKQNNSGWRIDYYIVSNRIADKVTKSEMID 259
Query: 324 HGIELEGFYGSDHCPVSLEL 343
G DHCP+ LE+
Sbjct: 260 TGDR------KDHCPLILEI 273
>gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|380031793|ref|YP_004888784.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274434|ref|ZP_12889932.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820389|ref|YP_007413551.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|342241036|emb|CCC78270.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|376010000|gb|EHS83326.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273886|gb|AGE38405.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
Length = 254
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 142/312 (45%), Gaps = 73/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK+ F+TTF D D +QE ++ A +++
Sbjct: 1 MKLISWNVNGLRAAVKHG------FVTTFNELDADFFCVQETKLQAG----------QIE 44
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE-- 155
D F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 45 LD-------------------FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGIGVP 83
Query: 156 --KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 212
+GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPLI+
Sbjct: 84 EFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPLIF 141
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGDLNV+HE ID+ + + + GFT ER +F +L G D
Sbjct: 142 CGDLNVAHENIDLKNW---------------RSNHHSAGFTDEERTKFDRLLAAG-YTDT 185
Query: 273 YR-FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R F + D+ +S+ G+ G RIDYFI S++L +++ +
Sbjct: 186 FRHFYPDQTDIYSWWSYRGHARDNNSG--WRIDYFITSQQLDSQLLNARIHNE------I 237
Query: 332 YGSDHCPVSLEL 343
+GSDHCPV L++
Sbjct: 238 FGSDHCPVELDI 249
>gi|227891490|ref|ZP_04009295.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|227866637|gb|EEJ74058.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
Length = 275
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 141/322 (43%), Gaps = 67/322 (20%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+K ++WN +SL R K + + I +PD+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPT---KKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
Q + + F +Y+I W A YAGT L K P
Sbjct: 57 Q------------------TILAEQFPDYEITWRSSQEPARKGYAGTMFLYKNNLNPTVS 98
Query: 151 SFSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
++ ++GR+I EF+ FY+ Y PN G + R+ WD++ ++++
Sbjct: 99 YPEIDAPEPMDSEGRIITLEFDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KPL+ GD NV+H+EID++HP + GFT ER F +L
Sbjct: 157 DQNKPLLSSGDFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+G D +R++H D+ +SW + K RIDY++ S + D+I+ EM
Sbjct: 202 NKG-FTDTFRYVH--GDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM- 257
Query: 323 GHGIELEGFYGSDHCPVSLELS 344
L+ DH P+ LE++
Sbjct: 258 -----LDSGERRDHTPIVLEIN 274
>gi|420263761|ref|ZP_14766397.1| exodeoxyribonuclease [Enterococcus sp. C1]
gi|394769203|gb|EJF49066.1| exodeoxyribonuclease [Enterococcus sp. C1]
Length = 250
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 136/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK N FS D D LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK--T 157
+W+ A+ K Y+GTA+ K+ + +E+ T
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKEPALSVRYGLGIEEHDT 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GRVI E+ F+L+ Y PN+ + E R W+ ++ + K +I CGDL
Sbjct: 88 EGRVITLEYPEFFLITCYTPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKSVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+ ID+ + K + GFT ER++F +L G D +R+
Sbjct: 146 NVAHKNIDIKNW---------------KTNQKSAGFTPEEREKFSTLLAAG-FTDTFRYF 189
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D + +S WS + RIDYF+VS+ L +R++ ++ I GSD
Sbjct: 190 Y--PDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDNLNERLLDAKIHTDII------GSD 241
Query: 336 HCPVSLEL 343
HCPV L+L
Sbjct: 242 HCPVELDL 249
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + E N D D LQE +M
Sbjct: 3 MKLISWNVNGLRACCDKGFREIFN---ELDADFFCLQETKM------------------- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L F+ Y +W+ A+ K Y+GTA+ + QP V++ L
Sbjct: 41 ---QEGQLDL-------AFEGYTSYWNYAEKKGYSGTAIFTRH--QPLSVTYGLGIDEHD 88
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E E FYL+ Y PN+ ++ R W++ ++++LQ KP++ CGD
Sbjct: 89 HEGRVITLEMENFYLVTVYTPNS--QDGLKRLDYRMTWEEDFRKYLLQLDRQKPVLVCGD 146
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ ++N GFT ER++F +L G ID +R
Sbjct: 147 LNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQLLLDAG-FIDTFRH 190
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ + WS + + RIDYF+ S + D+ +Q I E F GSD
Sbjct: 191 FYPTQENIYSW-WSYRFKAREKNAGWRIDYFLASSRIADK-----LQDAKIHTEIF-GSD 243
Query: 336 HCPVSLELS 344
HCPV + ++
Sbjct: 244 HCPVEVTIN 252
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 146/313 (46%), Gaps = 65/313 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVNKG---FLDYFREMDADIFCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
E Y+ +W+ A K Y+GTA+ KK +P V + +E+ +
Sbjct: 46 DLGEE----------------YEQYWNYALKKGYSGTAVFTKK--KPLSVRYGIEENEEP 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGD 215
GR++ EFE+F+L+N Y PN+ + + S R + F LQ + KP+I CGD
Sbjct: 88 EGRILTLEFESFFLVNVYTPNS---KRDLSRLEERLEWEERFRFYLQKLDACKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+ ID+ + +K + G GFT ER++ IL++ D +R
Sbjct: 145 LNVAHQVIDLKN---------------SKSNHGNSGFTTEEREKM-TILQDAGFTDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ D WS P + R RIDYF+VS L+D ++ + + + GSD
Sbjct: 189 FYPDQ-TDAYTWWSYMPKVRERNIGWRIDYFLVSSRLRDFLVDARIDSNIL------GSD 241
Query: 336 HCPVSLELSEASS 348
HCP+ L +++ +
Sbjct: 242 HCPIHLIMNDCDT 254
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L ++ F +F+ D+ +QE +M + A
Sbjct: 1 MRLVSWNVNGLRACMQKG---FKDFLEQSGADIFCVQETKMQPEQANFA----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F+ Y +W+ A K Y+G L K+ +P V + +
Sbjct: 47 ------------------FEGYHAFWNSAVKKGYSGVLTLSKE--EPLSVRYGIGIAEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGD 215
+GRV++ E+ FYL+N Y PN + R W+K + F+ + K ++ CGD
Sbjct: 87 LEGRVVVCEYSQFYLVNVYVPNA--QRGLLRLPYRLSWEKAFRGFLSGLVAHKGVLVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+++P+ A + N GF+ ER F A+L+EG ID YR
Sbjct: 145 LNVAHTEIDLTNPQ---ANRYNA------------GFSDPERHAFSALLQEG-FIDTYRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ E+ ++W + IG+ R + + RIDYF+ S+ L+D + + H +G
Sbjct: 189 FYPEQKE--AYTWW-SYIGQARERNVGWRIDYFLASQNLQDTLKNAHIYTH------IFG 239
Query: 334 SDHCPVSLEL 343
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|345861274|ref|ZP_08813541.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
gi|344325629|gb|EGW37140.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
Length = 250
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 142/310 (45%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN F +F + D+ +QE ++
Sbjct: 1 MKLISWNVNGIRACVKNG---FLDFFAKENADIFCIQETKV------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK-- 156
+EE++ PF+ Y +W+ A K Y+GTA+ K +P K+ + + K
Sbjct: 39 ---QEEQI---------PFRVEGYYQYWNFAQKKGYSGTAIFSK--MEPNKIVYGMGKEE 84
Query: 157 --TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 213
+GRVI EF +Y++ Y PN+ + + R KW++ ++ + KP+I C
Sbjct: 85 HDQEGRVITLEFGEYYVVTVYTPNS--QRGLARLEYRMKWEEDFLNYLKDLENSKPVIVC 142
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H EID+ +P N+++ GF+ ER +F ++ G +D +
Sbjct: 143 GDLNVAHTEIDLKNP------------STNRKN---AGFSAEERNKFDELMNNG-FVDTF 186
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
RF + K + WS + RIDYF VS LKD++ I + G
Sbjct: 187 RFFYPNK-TEAYTWWSYMFNARANNAGWRIDYFCVSAGLKDQL------KEAIIYKNVLG 239
Query: 334 SDHCPVSLEL 343
SDHCPV LE+
Sbjct: 240 SDHCPVGLEI 249
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 143/309 (46%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F + D D+ LQE ++ + HQ
Sbjct: 1 MKVISWNVNGLRAAVTKG---FIDSFNELDADIFCLQETKL---------QPHQ------ 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTD- 158
L P ++ Q W S Y+GTA+ + +P V+ +E+ D
Sbjct: 43 -----------IELELPGYE--QFWNSAVKKGYSGTAVFTR--IKPIAVTNGIGIEEHDQ 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CGDL
Sbjct: 88 EGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRAYLLELDKKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GF+ ER + +L+ G D +R+L
Sbjct: 146 NVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLESG-FTDTFRYL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D +SW + +GK R + + RIDYFI S+ L D+I ++ + +GS
Sbjct: 190 Y--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKRLDDKIKEAKIH------QQIFGS 240
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|410918464|ref|XP_003972705.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Takifugu
rubripes]
Length = 314
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
P L D T++ + N +K +WN + L VK + +++ +PDV+
Sbjct: 39 PILYEDPPDKMTSKDGRDAN-----MKITSWNVDGLRAWVKK---KGLDWVREENPDVLC 90
Query: 77 LQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--Y 134
LQE + K P + + ++ PFK +W+ +D K Y
Sbjct: 91 LQETK---CAEKSLPAD------------------ITSMPEYPFK----YWAGSDDKEGY 125
Query: 135 AGTALLVKKCFQPKKVSFSLEK----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 190
+G A+L K +P KV++ + K +GRVI AEF +F+L+ Y PN+G
Sbjct: 126 SGVAMLSKT--EPIKVTYGIGKEEHDKEGRVITAEFSSFFLVTVYVPNSG--RGLVRLDY 181
Query: 191 RRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 249
R+ WD + ++ + KP++ CGDLNV+H+EID+ +P+ NK++
Sbjct: 182 RKTWDVDFRTYLSELDIQKPVVLCGDLNVAHQEIDLKNPK------------GNKKN--- 226
Query: 250 PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVS 309
GFT ER+ F +L+ G +D++R L+ E+ F W+ + + R+DYF++S
Sbjct: 227 AGFTAEEREGFSQLLEAG-FVDSFRELYPEQTHAYSF-WTYMMNARDKNVGWRLDYFVLS 284
Query: 310 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
L + +++ GSDHCP++L +
Sbjct: 285 SSLLPALCDSKIRNQ------VRGSDHCPITLHI 312
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 149/319 (46%), Gaps = 65/319 (20%)
Query: 37 SKKDPLKFVTWNANSL--LLRVKNNWPE----FSNFITTFDPDVIALQEVRMPAAGSKDA 90
S+K+ +K ++WN N L ++ KN E + + D DV+ LQE ++ KD
Sbjct: 33 SEKNLVKVISWNVNGLRACMKRKNELEEEGSALARLADSEDFDVLCLQETKLQ---EKDV 89
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPK 148
Q++ S +W+ + SK Y+G AL+ + +P
Sbjct: 90 EAIKQKILGGYSNS---------------------FWTCSTSKLGYSGCALISR--IKPL 126
Query: 149 KVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 204
V++ L +GRV+ AEF+TF+L++ Y PN+G + E ++ R +WD ++L+
Sbjct: 127 SVTYGLGISQHDGEGRVVTAEFDTFFLVSVYVPNSGQRLERLTY-RTTEWDPAFSTYLLE 185
Query: 205 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 263
KP+I GDLN +HEEID+ P+ NK GFT ER F
Sbjct: 186 LEKRKPVIVTGDLNCAHEEIDIYDPD------------GNKR---SAGFTSEERTSFQTN 230
Query: 264 LKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+ L+D +R K+ + GF+ WS + + K R+DYF+VS+ L C +
Sbjct: 231 FIDKGLVDTFR---KQHPLAVGFTYWSYRSNARPQNKGWRLDYFLVSQGL-----VCSVA 282
Query: 323 GHGIELEGFYGSDHCPVSL 341
+ L GSDHCP+ L
Sbjct: 283 DSYV-LPQLDGSDHCPIGL 300
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 133/308 (43%), Gaps = 70/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K EF D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---EFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGMGVPEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
T+GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++CG
Sbjct: 86 DTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + +K + FT ER F L G ID +R
Sbjct: 144 DLNVAHQEIDLKN---------------DKTNHHNASFTDEERADFTKQLDSG-FIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + +S WS + RIDYF+ S + K I ++ L G
Sbjct: 188 NLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMG 238
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 239 SDHCPVEL 246
>gi|417986286|ref|ZP_12626858.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
gi|410526479|gb|EKQ01366.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
Length = 252
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 133/308 (43%), Gaps = 70/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGMGVPEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
T+GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++CG
Sbjct: 86 DTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H+EID+ + +K + GFT ER F L G ID +R
Sbjct: 144 DLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ + +S WS + RIDYF+ S K I ++ L G
Sbjct: 188 NLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRNFKPYIQDAKI------LTEIMG 238
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 239 SDHCPVEL 246
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 138/307 (44%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTD- 158
+L P ++ Y W S Y+GTA+ + +P V+ +E+ D
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGIGIEEHDQ 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I CGDL
Sbjct: 88 EGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAWEDAFRNYLLELDKKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GF+ ER + +L G D +R L
Sbjct: 146 NVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDTFRHL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ + + + WS + R RIDYFI S+ L D+I ++ + +GSDH
Sbjct: 190 YPDAIEEYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGSDH 242
Query: 337 CPVSLEL 343
CPV L++
Sbjct: 243 CPVELDI 249
>gi|385826522|ref|YP_005862864.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
gi|329667966|gb|AEB93914.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
Length = 260
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ +Q+ R+ P D P +Q
Sbjct: 7 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQ----- 58
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS--FSLEKT 157
+W+ A+ K YAGTA+ K+ +P V+ F + +
Sbjct: 59 -------------------------YWNYAERKGYAGTAVFTKE--KPITVANGFGVPEV 91
Query: 158 DG--RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
DG R I EF FY +N P +G K + F R W + + +V + KP+I G
Sbjct: 92 DGEGRSITLEFSNFYFINVQVPFSGEKLQRLDF--RELWAQIFRNYVTKLMQYKPVIIGG 149
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
D++V+HE ID++ P+ ++ +PGFT ERK F +L G ID +R
Sbjct: 150 DMSVAHERIDLAEPD---------------DNHHRPGFTGIERKEFSELLNAG-FIDTFR 193
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ H ++ +S+ + R+DYF+VS L+D++ ++ L GS
Sbjct: 194 YFHPDEAKYTYWSYRDKE-ARAENLGWRLDYFLVSNNLEDKLTNAKI------LNNIMGS 246
Query: 335 DHCPVSLEL 343
DHCP+ L++
Sbjct: 247 DHCPIELDV 255
>gi|385840954|ref|YP_005864278.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|417787595|ref|ZP_12435278.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|417809656|ref|ZP_12456337.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|418960898|ref|ZP_13512785.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
gi|300215075|gb|ADJ79491.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|334307772|gb|EGL98758.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|335350580|gb|EGM52076.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|380344565|gb|EIA32911.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
Length = 275
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 141/322 (43%), Gaps = 67/322 (20%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+K ++WN +SL R K + + I +PD+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPT---KKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
Q + + F +Y+I W A YAGT L K P
Sbjct: 57 Q------------------TILAEQFPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPTIS 98
Query: 151 SFSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
++ ++GR+I EF+ FY+ Y PN G + R+ WD++ ++++
Sbjct: 99 YPEIDAPEPMDSEGRIITLEFDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSL 156
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KPL+ GD NV+H+EID++HP + GFT ER F +L
Sbjct: 157 DQNKPLLSSGDFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+G D +R++H D+ +SW + K RIDY++ S + D+I+ EM
Sbjct: 202 NKG-FTDTFRYVH--GDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM- 257
Query: 323 GHGIELEGFYGSDHCPVSLELS 344
L+ DH P+ LE++
Sbjct: 258 -----LDSGERRDHTPIVLEIN 274
>gi|266623165|ref|ZP_06116100.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
gi|288865076|gb|EFC97374.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
Length = 251
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 140/307 (45%), Gaps = 65/307 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F ++ D D+ +QE ++ + EL+
Sbjct: 3 KLISWNVNGLRACVGKG---FLDYFKEVDADIFCIQESKLS--------EGQIELE---- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
Y +W+ A+ K Y+GTA+ K+ +P V++ +
Sbjct: 48 -----------------LSGYHQYWNYAEKKGYSGTAMFTKE--EPLSVAYGIGIEEHDH 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AEF +Y++ Y PN+ K+ R W+ ++ KP+I+CGDL
Sbjct: 89 EGRVITAEFSDYYVVTCYTPNS--KDGLARLPYRMVWEDAFLRYLKGLEEKKPVIFCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER +F +L G ID +R+
Sbjct: 147 NVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLDAG-FIDTFRWF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +++ + WS + + RIDYF VSE LKDR+++ ++ + GSDH
Sbjct: 191 YPDREEIYSW-WSYRFSARSKNAGWRIDYFCVSEALKDRLVSADIHTEVL------GSDH 243
Query: 337 CPVSLEL 343
CPV L +
Sbjct: 244 CPVELVI 250
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 146/307 (47%), Gaps = 63/307 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F ++ D D+ +QE ++ QE + D +
Sbjct: 5 KLISWNVNGLRACVKKG---FLDYFNEMDADIFCVQETKL------------QEGQIDLE 49
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--G 159
+ Y +W+ A+ K Y+GTA+ K+ K+ +E+ D G
Sbjct: 50 -----------------LEGYYDYWNYAEKKGYSGTAVFTKEKPISVKMGLGIEEHDNEG 92
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNV 218
RVI E++ F+L+N Y PN+ +++ + R W+ + ++ KP+I CGDLNV
Sbjct: 93 RVITLEYDKFFLVNVYTPNS--QQKLARLEYRMSWEDVFRNYLKDLEKNKPVILCGDLNV 150
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+ +P N+++ GF+ ER + +L G D +R+ +
Sbjct: 151 AHKEIDLKNP------------SSNRKN---AGFSDEERSKMSELLNSG-FTDTFRYFY- 193
Query: 279 EKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
D++ +S WS + RIDYFIVS+ L D++ ++ IE GSDHC
Sbjct: 194 -PDIEGVYSWWSYRFNARANNAGWRIDYFIVSQSLNDKLEDAKIHT-SIE-----GSDHC 246
Query: 338 PVSLELS 344
PV LE++
Sbjct: 247 PVELEIN 253
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 140/323 (43%), Gaps = 80/323 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK F+ D DV ALQE ++
Sbjct: 1 MRLISWNVNGLRAVVKKG---FNEAFAALDADVFALQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
+E ++ L Y WS A+ K Y+GTA+ ++ +P +V +
Sbjct: 39 ---QEGQIEL-------DLPGYVQNWSYAEKKGYSGTAVFSRE--EPLQVVHHVGTPALD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--------- 207
T+GR+ EFE F+ ++ Y PN + E + R WD +EF
Sbjct: 87 TEGRICACEFEKFWFVDVYTPNA--QPELARLEHRMAWDAAFREFCKNLEAGVVPEGLGY 144
Query: 208 -----KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
KP+I CGD NV+H+EID+ +P + + G PGF+ ER F +
Sbjct: 145 ASAEPKPVIMCGDFNVAHQEIDLKNP---------------RSNRGNPGFSDEERSSFTS 189
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 321
+L G D +R LH D++ +S WS + RIDYF+VS+ L+ I + +
Sbjct: 190 LLDAG-FADTFRMLH--PDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDALRGAIESASI 246
Query: 322 QGHGIELEGFYGSDHCPVSLELS 344
+ GSDHCPV L+++
Sbjct: 247 ------YDEVMGSDHCPVGLDIA 263
>gi|238854034|ref|ZP_04644388.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238833354|gb|EEQ25637.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 254
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 66/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +++ F N T D D+ A+Q+ R+ A E++ D
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEA----------NEVQID- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS--FSLEKTD 158
Y +W+ A K YAGTA+ K+ +P V+ F + + D
Sbjct: 47 ------------------LPGYYQYWNYAKRKGYAGTAVFTKE--KPITVANGFGVPEVD 86
Query: 159 G--RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
G R I EF FY ++ P +G K + F R W + + +V + KP+I GD
Sbjct: 87 GEGRSITLEFPNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
++V+HE+ID++ P+ ++ GFT ERK F +L G ID +R+
Sbjct: 145 MSVAHEKIDLAEPD---------------DNHRHAGFTGIERKEFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H ++ +S+ + K G R+DYF+ S L+D++I ++ L GSD
Sbjct: 189 FHPDEAKYTYWSYREDARAKNIG--WRLDYFLASHNLEDKMINTKI------LNNIMGSD 240
Query: 336 HCPVSLEL 343
HCP+ L+L
Sbjct: 241 HCPIELDL 248
>gi|48477699|ref|YP_023405.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
gi|48430347|gb|AAT43212.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
Length = 250
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 141/312 (45%), Gaps = 72/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN NFI +PD++ LQE++ +G D P+ +
Sbjct: 1 MKILSWNVNGIRAAVKNG---ILNFINEENPDIVLLQEIK---SGKNDLPEELHHM---- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y+I+ + A+ K Y+GT L K +P S + D
Sbjct: 51 --------------------GYKIFINPAEKKGYSGTMALSK--VEPLDYSSGIGIKDYD 88
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
GRV + +++ FY++NTY PN+ + + +D + EF + KPLI GD
Sbjct: 89 SEGRVQILKYDNFYIINTYFPNS--QHGLTRLDYKIDFDNKFLEFCEKLRKEKPLIITGD 146
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
NV+HEEID++ P K++ GFTI ER L G ID YR+
Sbjct: 147 FNVAHEEIDIARP---------------KDNENNAGFTIQERNWMTEFLNHG-YIDTYRY 190
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEE----LKDRIIACEMQGHGIELEGF 331
HKE +S+ N K G RIDYFIV+++ +KD II LE
Sbjct: 191 FHKEPGHYSWWSYRFNARAKNIG--WRIDYFIVTDDFIKNVKDSII----------LENV 238
Query: 332 YGSDHCPVSLEL 343
GSDH P+ L L
Sbjct: 239 KGSDHAPLELLL 250
>gi|414085431|ref|YP_006994142.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412999018|emb|CCO12827.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 251
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 138/311 (44%), Gaps = 69/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K ++WN N L VK F + D D LQE ++ A + P HQ
Sbjct: 1 MKLISWNVNGLRAVVKKG---FIDIFNQLDADFFCLQETKLQADQIDLELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK--- 156
+W+ A+ K Y+GTA+ K +P V + L K
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFTKH--EPDDVFYGLGKEEH 85
Query: 157 -TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+GRVI + +Y++ Y PN+ + E R W++ ++ Q KP+I CG
Sbjct: 86 DQEGRVITLSYPDYYVVTCYTPNS--QNELKRLDYRMTWEEDFLAYLNQLDAEKPVIVCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HE ID+ + K + GFT ER +F L+ G ID +R
Sbjct: 144 DLNVAHENIDIKNW---------------KTNRKNAGFTDEERGKFTEFLENG-YIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ + E ++ +S WS + RIDYFIVSE L++++++ + L G
Sbjct: 188 YFYPE--LEGAYSWWSYRFNARANNAGWRIDYFIVSERLQEKLVSAAI------LNEVVG 239
Query: 334 SDHCPVSLELS 344
SDHCPV L+++
Sbjct: 240 SDHCPVELQIN 250
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 64/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN L +K + E+ + DPD+I LQE++ +++ D+
Sbjct: 64 LKIISWNVAGLRAWLKKDVVEY---LKKEDPDIICLQEIKC----------TEKQMPDEA 110
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFS-----LE 155
K Y+I+ + D + Y+G AL K +P V L+
Sbjct: 111 K-----------------LPGYKIYINSGDKAGYSGVALYSKT--KPISVRMGKEIKDLD 151
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
+GRVI AE+E F+L++TY PN G + +R KWD+ ++++ + + KP++ G
Sbjct: 152 DNEGRVIEAEYEQFFLVSTYIPNAG--AGLKTLPKRMKWDEAFRKYLKELDTKKPVVLTG 209
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+++P K + GFT ER +L++G +D +R
Sbjct: 210 DLNVAHEEIDIANP---------------KTNTKSAGFTKEERDNMSLLLEQG-FVDTFR 253
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ EK F W+ + + R+DYFI S+ D + ++ + GS
Sbjct: 254 TLNPEKTGAYTF-WTYFHNSRAKNVGWRLDYFITSKRFMDNVCDSTIRNEVL------GS 306
Query: 335 DHCPVSLELS 344
DHCP+ ++
Sbjct: 307 DHCPIVFYIN 316
>gi|406893678|gb|EKD38677.1| hypothetical protein ACD_75C00647G0002 [uncultured bacterium]
Length = 500
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 154/361 (42%), Gaps = 80/361 (22%)
Query: 7 PIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNF 66
P+ EC K + P K G + +K+ +K ++WN N + K F++
Sbjct: 202 PLLPECPQK--GVRPRKIPGV-------KMTKEHVMKCISWNVNGIRAVAKKG---FADQ 249
Query: 67 ITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIW 126
+ TFD DV+ALQE ++ +L D+ K Y +
Sbjct: 250 LRTFDADVVALQETKI----------QEDQLTDELKN----------------IPGYTSY 283
Query: 127 WSLADSK-YAGTALLVKKCFQPKKVSFSLEK----TDGRVILAEFETFYLLNTYAPNNGW 181
W A+ K Y+G A + P V + L +GRV+ EF YL+N Y PN+
Sbjct: 284 WHCAERKGYSGVAFYTR--IPPVAVRYGLGDPEFDCEGRVLTLEFADCYLINIYFPNSA- 340
Query: 182 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 240
E+ + +++ R+ + + KP+I CGD NV+H+EID+ +P
Sbjct: 341 -EKLVRLAHKLRFNDRLLGYARELEQKKPVILCGDFNVAHKEIDLKNP------------ 387
Query: 241 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 300
K + GFT ER + + G +D +R ++ D +S+ N K G
Sbjct: 388 ---KTNVKNAGFTPEERAWMDSFVAAG-FVDTFRLFCEDPDQYTWWSYRFNARAKNVG-- 441
Query: 301 MRIDYFIVSEELKDRI----IACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 356
RIDYF VS DR+ I CE+ GSDHCPV+LE SEK ++
Sbjct: 442 WRIDYFCVSGSAADRVRSATILCEVM----------GSDHCPVALEFVSEGVKSEKSGER 491
Query: 357 N 357
+
Sbjct: 492 S 492
>gi|328956310|ref|YP_004373643.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
gi|328456634|gb|AEB07828.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
Length = 283
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 147/335 (43%), Gaps = 83/335 (24%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAP 91
S E + + +F +WN N L +K P+FS + + D++A+QE ++
Sbjct: 9 SQPERADERIYRFASWNVNGLRALMKKE-PDFSEIAASLNADILAIQETKL--------- 58
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 150
QE + D Y WS A K Y+GTA+ ++ QP +
Sbjct: 59 ---QEGQIDLD-----------------LAGYHQTWSYAARKGYSGTAVFSRE--QPIRT 96
Query: 151 SFSLEKTD--------------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK 196
+ D GRV EFE F+ + Y PN+ ++ R WD+
Sbjct: 97 LRADAMLDVVEGGELLEPAIREGRVCALEFERFWFADVYTPNS--QDGLARLPVRLAWDE 154
Query: 197 RIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 253
+ F+ Q KP++ CGD NV+H EID+ +P K + G GF+
Sbjct: 155 AYRAFLKQLERMGDKPVVTCGDFNVAHNEIDLRNP---------------KSNRGNAGFS 199
Query: 254 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM----RIDYFIVS 309
ER F +L+ G D +R+L+ D+ +SW ++ +R RIDYF+VS
Sbjct: 200 DEERASFSRLLEAG-FTDTFRYLY--PDVRDAYSWWSY---RFHARRTNAGWRIDYFLVS 253
Query: 310 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+ ++DRI+ ++ + +GSDHCPV L ++
Sbjct: 254 DSVRDRIVEATIR------QDVFGSDHCPVELVIA 282
>gi|315221911|ref|ZP_07863822.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
gi|315188877|gb|EFU22581.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
Length = 275
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F S ++GR+I EF+ F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLEDRQIWDKKYADYLTAL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF--SLEKTD 158
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++E+ D
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINMEEHD 86
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGD
Sbjct: 87 KEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 145 LNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K+ + WS + + RIDYF+ S LK + + + GSD
Sbjct: 189 FYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTCL------KDALIYKDILGSD 241
Query: 336 HCPVSLEL 343
HCPV LEL
Sbjct: 242 HCPVGLEL 249
>gi|291528729|emb|CBK94315.1| exodeoxyribonuclease III [Eubacterium rectale M104/1]
Length = 251
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 139/310 (44%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L V+ F +F + D D +QE ++ A D P HQ
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDADFFCIQESKLQAGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKN--EPLSVSYGIGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
+GRVI E++ FYL+ Y PN+ + E R +W+ +E++ K P++ CG
Sbjct: 86 DKEGRVITLEYDNFYLVTCYTPNS--QNELKRLPYRMQWEDDFREYLKTLDAKKPVVLCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P K + GF+ ER + +L G D +R
Sbjct: 144 DLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGSG-FTDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ + D + +S WS + + RIDYFI S+ + D+ +Q I + G
Sbjct: 188 YFY--PDAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDK-----LQKAAIHTDVL-G 239
Query: 334 SDHCPVSLEL 343
SDHCPV +++
Sbjct: 240 SDHCPVEVDI 249
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 148/330 (44%), Gaps = 60/330 (18%)
Query: 21 PSKKDGETTETSSEENSKKDP--LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ 78
P K E+ E K P LK +WN N + + E+ + PD+ A+Q
Sbjct: 74 PKKSKSESGEPCDGGEGDKKPWNLKLCSWNVNGVRAWLGKEGLEY---LKKEQPDIFAIQ 130
Query: 79 EVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGT 137
E + D+K E K + + Y ++ D + Y+G
Sbjct: 131 ETKC----------------SDSKLPPEMKSV----------EGYHSYFLAGDQEGYSGV 164
Query: 138 ALLVKKCFQPKKVSFSLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 195
ALL K K +EK D GRVI AEF+ FYL+ Y PN G K + R +WD
Sbjct: 165 ALLAKIKPLDVKYGIGMEKHDKEGRVITAEFDKFYLVAVYVPNAGKKLVRLDY--RMEWD 222
Query: 196 KRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 254
K + ++ + K ++ CGD+NV+H+EID+++P+ NK++ GFT
Sbjct: 223 KDFRAYLKELEAKKHVVLCGDMNVAHQEIDLANPK------------TNKKN---AGFTQ 267
Query: 255 AERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKD 314
ER F A+L+ G +D++R L+ +K F W+ + + R+DYFI+S+ L
Sbjct: 268 EERDGFTALLESG-FVDSFRHLYPDKKGAYTF-WTYMMNARAKNVGWRLDYFILSKALAS 325
Query: 315 RIIACEMQGHGIELEGFYGSDHCPVSLELS 344
I + GSDHCPV L L+
Sbjct: 326 NISDSLIHSQ------VMGSDHCPVILLLN 349
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 142/312 (45%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F + + FD D I LQE T
Sbjct: 1 MKIISWNVNGIRAVQEKG---FRDSLQHFDADCILLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
KA ++ + +AL +Y ++ + A+ K Y+G ALL + P +V +
Sbjct: 37 KAQDDQ---VHKALEG--IDHYHVYCNSAERKGYSGVALLTRN--PPLRVVHDMGIAEHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
+GRV++AEFE+FYLLN Y PN+G + R+ WD + ++ Q KP+I CGD
Sbjct: 90 QEGRVLVAEFESFYLLNVYVPNSG--DGLARLDYRQTWDAALLAYLQQLQNQKPVIACGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
NV+H+ ID++ P+ A N G+T E F + G ID++R
Sbjct: 148 FNVAHQAIDIARPK----ANYN----------KSAGYTQTEIDGFSRFTEAG-FIDSFRH 192
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
H E +SW G R K + RIDY + S+ L RI + L G
Sbjct: 193 FHPET---VAYSWWSYRAGA-RAKNIGWRIDYVLTSQALLPRIQDSFI------LPEIMG 242
Query: 334 SDHCPVSLELSE 345
SDHCPV +++SE
Sbjct: 243 SDHCPVGIQISE 254
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 69/309 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N + ++ F + D D+ +QE ++
Sbjct: 3 KMISWNVNGIRACIEKG---FLDVFKNMDADIFCIQESKVS------------------- 40
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
E +L L P + +Y W+ A K Y+G A+ K +P KV++ +
Sbjct: 41 ---EGQL----ELDLPGYYDY---WNYAQKKGYSGVAMFTKD--KPVKVTYGMGIEEHDN 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
+GR+I AEFE +Y+L Y PN+ + + + R W+ +++ S K PLI+CGDL
Sbjct: 89 EGRIITAEFENYYMLTCYTPNS--QRQLTRLEYRMDWEDAFLDYIKNLSQKKPLIYCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+ +ID+ +P K + GFT ER++ A+++ D++R+L
Sbjct: 147 NVAFADIDLKNP---------------KTNRKNAGFTDEERQKM-AVVQASGFTDSFRYL 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ +SW + +G R K + RIDYF+VS+ LK+ I + GS
Sbjct: 191 Y--PDLEGVYSW-WSYMGGARSKNIGWRIDYFMVSDSLKNCIKQARIH------TDIMGS 241
Query: 335 DHCPVSLEL 343
DHCPV LE+
Sbjct: 242 DHCPVELEI 250
>gi|238922913|ref|YP_002936426.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
gi|238874585|gb|ACR74292.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
Length = 251
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L V+ F +F + D D +QE ++ A D P HQ
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDADFFCIQESKLQAGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKN--EPLSVSYGIGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
+GRVI E++ FYL+ Y PN+ + E R +W+ +E++ K P++ CG
Sbjct: 86 DKEGRVITLEYDNFYLVTCYTPNS--QNELKRLPYRMQWEDDFREYLKTLDAKKPVVLCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P K + GF+ ER + +L G D +R
Sbjct: 144 DLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGSG-FTDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ + D + +S WS + + RIDYFI S+ + D++ + + G
Sbjct: 188 YFY--PDAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLKKAAIHTDVL------G 239
Query: 334 SDHCPVSLEL 343
SDHCPV +++
Sbjct: 240 SDHCPVEVDI 249
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 141/311 (45%), Gaps = 71/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + +K F + D D +QE + A + D P
Sbjct: 1 MKFVSWNVNGIRACLKKG---FLAYFEQVDADFFCIQESKCQAGQVEIDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD- 158
Y+ +W+ A K Y+GTA+ K P V + + D
Sbjct: 49 ---------------------GYEQYWNYALRKGYSGTAIFTKHT--PLSVKYGVGDRDT 85
Query: 159 ---GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 214
GR+I E+E FY++ Y PN+ K + R +W+ ++ ++++ KP+I+CG
Sbjct: 86 EDEGRIITLEYERFYVVTVYTPNS--KRDLARLDERLEWEDNLRAYLIELDQQKPVIYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HE ID+ + + PN G GFT ER + +L G D +R
Sbjct: 144 DLNVAHEAIDLKNAK------------PNV---GNSGFTNEERGKMTLLLNSG-FTDTFR 187
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
++ ++D F+W + + K R + + RIDYFIVS+ L + ++ +
Sbjct: 188 AMYPQEDNR--FTW-WSYMNKVRERNIGWRIDYFIVSDRLNQHVTNADIHDQQL------ 238
Query: 333 GSDHCPVSLEL 343
GSDHCPV LEL
Sbjct: 239 GSDHCPVVLEL 249
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 139/323 (43%), Gaps = 80/323 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK F D DV ALQE ++
Sbjct: 1 MRLISWNVNGLRAVVKKG---FDEAFAALDADVFALQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
+E ++ L Y WS A+ K Y+GTA+ ++ +P +V +
Sbjct: 39 ---QEGQIEL-------DLPGYVQNWSYAEKKGYSGTAVFSRE--EPLQVVHHVGTPALD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--------- 207
T+GR+ EFE F+ ++ Y PN + E + R WD +EF
Sbjct: 87 TEGRICACEFEKFWFVDVYTPNA--QPELARLEHRMAWDAAFREFCKNLEAGVVPEGLGY 144
Query: 208 -----KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
KP+I CGD NV+H+EID+ +P + + G PGF+ ER F +
Sbjct: 145 ASAEPKPVIMCGDFNVAHQEIDLKNP---------------RSNRGSPGFSDEERSSFTS 189
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 321
+L G D +R LH D++ +S WS + RIDYF+VS+ L+ I + +
Sbjct: 190 LLDAG-FADTFRMLH--PDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDALRGAIESASI 246
Query: 322 QGHGIELEGFYGSDHCPVSLELS 344
+ GSDHCPV L+++
Sbjct: 247 ------YDEVMGSDHCPVGLDIA 263
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 62/287 (21%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M ++E+ ++ FK
Sbjct: 5 FMDFFNSVDADVFCIQESKM----------------------QQEQ-------NTFEFKG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----KTDGRVILAEFETFYLLNTYAP 177
Y +W+ A K Y+G KK +P VS+ ++ +GRVI EFE+FYL+N Y P
Sbjct: 36 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTP 93
Query: 178 NNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 236
N+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 94 NS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------- 143
Query: 237 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 296
K + GF+ ER++F +L G ID +R+ + K+ + WS +
Sbjct: 144 -------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARD 194
Query: 297 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 195 KDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|335031457|ref|ZP_08524893.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
gi|333769561|gb|EGL46670.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
Length = 275
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 139/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F S +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTAL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D +R++H D +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDNPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|390345498|ref|XP_789515.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Strongylocentrotus purpuratus]
Length = 342
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 162/336 (48%), Gaps = 64/336 (19%)
Query: 16 KPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVI 75
KP ++ K+ T E+ + LK WN + +K +++T PD+
Sbjct: 63 KPEVAEEPKEEVYTTDRKSESGEACNLKISAWNVGGMKAWIKKGG---IDYLTKESPDIF 119
Query: 76 ALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-Y 134
QE ++ D TK E L +Y I ++ A+ K Y
Sbjct: 120 FAQETKI----------------DATKPPPEADL-----------DDYHITYNAAEKKGY 152
Query: 135 AGTALLVKKCFQPKKVS--FSLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQR 190
+G AL KK +P V+ +E+ D GR+I AE+++FY + Y PN+ K +
Sbjct: 153 SGVALFSKK--EPLSVTKGMGIEEHDKEGRLITAEYDSFYFVGVYVPNSSRKLVRLDY-- 208
Query: 191 RRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 249
R++WDK ++ + K P+I CGD+NV+HEEID+ +P+ N+
Sbjct: 209 RQEWDKDFHAYLKKLDAKKPVICCGDMNVAHEEIDLKNPK------------SNRNK--T 254
Query: 250 PGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIV 308
PGFT ER+ F ++L G +D++R L+ +E D +++ GN K G R+DY ++
Sbjct: 255 PGFTDQEREGFTSLLDMG-FVDSFRHLYPEEADAYSFWTYMGNCRAKNVG--WRLDYGVI 311
Query: 309 SEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
S+ L ++ C+ Q + L+ F GSDHCP+ + L+
Sbjct: 312 SKALVPKL--CDNQ---MRLQTF-GSDHCPMVVSLA 341
>gi|227874120|ref|ZP_03992326.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
gi|227840032|gb|EEJ50456.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
Length = 254
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 140/306 (45%), Gaps = 63/306 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + N F D D+ LQE ++ QE + D
Sbjct: 5 KLISWNVNGLRAVMGKN---FMEDFKRLDADMFCLQETKL------------QEGQID-- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKTD 158
L P + +Q W Y+GTA+ K+ +P V + + +
Sbjct: 48 ------------LDLPGY--FQYWNYAVKKGYSGTAIFTKE--EPLSVQYGIGVEEHDQE 91
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLN 217
GRVI E+ FYL+ Y PN+ + E R K++ ++L K P+I+CGDLN
Sbjct: 92 GRVITLEYPEFYLITVYVPNS--QGELKRLPYRMKFEDAFLNYILTLEKKKPVIYCGDLN 149
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+HEEID+ +P+ + +N GF+ ER +F +L G L D++R +
Sbjct: 150 VAHEEIDLKNPD---SNHMNA------------GFSDEERAKFSRVLDSGYL-DSFRHFY 193
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
K+ + + WS + R RIDYF+VS++L+ ++++ + + GSDHC
Sbjct: 194 PNKEEEYSW-WSYRTKARDRNVGWRIDYFVVSKQLEKKLLSASIH------QEVMGSDHC 246
Query: 338 PVSLEL 343
PV + L
Sbjct: 247 PVEITL 252
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 140/309 (45%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L F T D D LQE +M
Sbjct: 1 MKLISWNVNGLRACCDKG---FREAFQTLDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+E +L L F+ Y +W+ A+ K Y+GTA+ +P V++ L
Sbjct: 39 ---QEGQLDL-------SFEGYTSYWNYAEKKGYSGTAIFTH--LKPLNVTYGLGIDVHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI E + FYL+ Y PN+ ++ R W+ + ++L+ K P++ CGD
Sbjct: 87 HEGRVITLEMDNFYLVTVYTPNS--QDGLKRLDYRMTWEDDFRNYLLELDKKKPVLVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ ++N GFT ER++F +L G ID +R+
Sbjct: 145 LNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQILLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ E+ + WS + + RIDYF+ S L D++ + ++ +GSD
Sbjct: 189 FYPEQTGIYSW-WSYRFKAREKNAGWRIDYFLASRRLADKLESAKIHTE------IFGSD 241
Query: 336 HCPVSLELS 344
HCPV + L+
Sbjct: 242 HCPVEVTLN 250
>gi|139439406|ref|ZP_01772847.1| Hypothetical protein COLAER_01867 [Collinsella aerofaciens ATCC
25986]
gi|133775185|gb|EBA39005.1| exodeoxyribonuclease III [Collinsella aerofaciens ATCC 25986]
Length = 272
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 138/316 (43%), Gaps = 68/316 (21%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQE------ 96
F +WN N L +K + P F D D++ALQE ++ D P HQ
Sbjct: 7 FASWNVNGLRAVLKKD-PSFIQIAQELDVDILALQETKLQEGQVDIDLPGYHQTWSYAER 65
Query: 97 --LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAG---TALLVKKCFQPKKVS 151
SR+E L ++RA + P YAG A+LV +
Sbjct: 66 KGYSGTAVFSRQEPLRVLRADALLP--------------YAGGGEAAVLVAQA------- 104
Query: 152 FSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGK 208
T+GRV EF+ F+ ++ Y PN + E R WD + F+ +GK
Sbjct: 105 ----ATEGRVCALEFDKFWFVDVYTPNA--QNELARIDVRMAWDDAYRGFLNALERETGK 158
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P++ CGD NV+HEEID+ +P K + G GF+ ER +F +L G
Sbjct: 159 PVVTCGDFNVAHEEIDLKNP---------------KSNRGNAGFSDEERGKFTELLNAG- 202
Query: 269 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
D +R D++ +S WS + RIDYF+VS+ IA ++ GI
Sbjct: 203 FTDTWR--AANPDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDS-----IAANVRDTGIR 255
Query: 328 LEGFYGSDHCPVSLEL 343
+ +GSDHCPV+L L
Sbjct: 256 GD-IFGSDHCPVTLTL 270
>gi|418965268|ref|ZP_13517046.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
gi|383342863|gb|EID21064.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
Length = 275
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 140/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F S ++GR+I EF+ F++ Y PN G + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDKKYADYLTAL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 146/312 (46%), Gaps = 68/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K + + + +PD++ALQE + + P EL++
Sbjct: 51 IKIISWNVAGLRAWIK---KDGHSILVKENPDIVALQETKCV-----EVP---NELQNGY 99
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--- 158
Y + S + G LL K+ +P KV+++ +
Sbjct: 100 ---------------------YSFLNTSEKSGHGGVLLLTKE--EPIKVTYTFDDKSKSG 136
Query: 159 ------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 211
GR+I+AE+E +YL+N Y PN+G + +R+ WD F+ + KP++
Sbjct: 137 LDGNGKGRIIIAEYENYYLINAYVPNSG--RGLVNLDKRKFWDDCYFSFIKKLDLNKPIV 194
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
+ GDLNV+H+EID+++P+ NK GFT ER F +L G +D
Sbjct: 195 YVGDLNVAHQEIDLANPK----------TNYNK----TAGFTDQERNDFTRLLDAG-FVD 239
Query: 272 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R L+ EK+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 240 VFRRLNPEKEGVYTF-WSNMRNAREKNVGWRLDYFVVSERIMNKVKECDI------LCSV 292
Query: 332 YGSDHCPVSLEL 343
GSDHCP+SL +
Sbjct: 293 KGSDHCPLSLTI 304
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 146/312 (46%), Gaps = 68/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K + + + +PD++ALQE + + P EL++
Sbjct: 58 IKIISWNVAGLRAWIK---KDGHSILVKENPDIVALQETKCV-----EVP---NELQNGY 106
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--- 158
Y + S + G LL K+ +P KV+++ +
Sbjct: 107 ---------------------YSFLNTSEKSGHGGVLLLTKE--EPIKVTYTFDDKSKSG 143
Query: 159 ------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 211
GR+I+AE+E +YL+N Y PN+G + +R+ WD F+ + KP++
Sbjct: 144 LDGNGKGRIIIAEYENYYLINAYVPNSG--RGLVNLDKRKFWDDCYFSFIKKLDLNKPIV 201
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
+ GDLNV+H+EID+++P+ NK GFT ER F +L G +D
Sbjct: 202 YVGDLNVAHQEIDLANPK----------TNYNK----TAGFTDQERNDFTRLLDAG-FVD 246
Query: 272 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R L+ EK+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 247 VFRRLNPEKEGVYTF-WSNMRNAREKNVGWRLDYFVVSERIMNKVKECDI------LCSV 299
Query: 332 YGSDHCPVSLEL 343
GSDHCP+SL +
Sbjct: 300 KGSDHCPLSLTI 311
>gi|376316682|emb|CCG00067.1| exodeoxyribonuclease III [uncultured Flavobacteriia bacterium]
Length = 253
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 62/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V++N N + +K +F + DPDV+ +QE T
Sbjct: 1 MKIVSFNVNGIRAIMKK---DFHESLAMMDPDVLCIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
KA ++ + AL P Y I+ + A K Y+GTA+L K+ +P VS+ +
Sbjct: 37 KAQDDQ---VAEALK--PINGYHIFSNSAVKKGYSGTAILTKE--KPISVSYDINIEEHD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
T+GRVI AEF ++++ Y PN+G + ++ R+ WDK ++ KP+I CGD
Sbjct: 90 TEGRVICAEFSAYFVVTVYVPNSGSALKRLTY--RQTWDKAFLAYLKALEKKKPVIVCGD 147
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H +ID+++P+ PN G+ E A L G +D +R
Sbjct: 148 LNVAHRDIDLANPK------------PNYNK--SAGYMQEEIDGIDAYLSAG-FVDTFR- 191
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H + D WS + R RIDYF++S +L ++ ++ + GSD
Sbjct: 192 -HFQPDTQKYSWWSYRAGARVRNVGWRIDYFLISPDLLKKVKKADIYNEVM------GSD 244
Query: 336 HCPVSLEL 343
HCPV+LEL
Sbjct: 245 HCPVALEL 252
>gi|350565008|ref|ZP_08933806.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
gi|348664197|gb|EGY80712.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
Length = 250
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 141/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK + E + +PD+I LQE+++
Sbjct: 1 MKFISWNVNGLRAAVKKGFLEK---LAEMNPDIIGLQEIKLS------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
E + + + NY A+ K Y+GTA+ K +P V++ +
Sbjct: 40 -----EGQLELELEGYELYYNY------AERKGYSGTAVFTK--LKPISVTYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI EFE +Y + Y PN+ K E + R W+ + ++ + KP++ CGD
Sbjct: 87 TEGRVITLEFEDYYFITCYTPNSKRKLERLDY--RVVWEDAFRNYLNELDKNKPIVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+++P+ + GF+ ER +F +L G +D +R
Sbjct: 145 LNVAHNEIDLANPD---------------TNHKSAGFSDEERAKFTELLASG-YVDTFRH 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ + + WS + R RIDYF+VSE DRI ++ + GSD
Sbjct: 189 FYPDRADEYSW-WSNFNKARERNIGWRIDYFVVSERFLDRIEDSKIH------QSVMGSD 241
Query: 336 HCPVSLEL 343
HCPV + L
Sbjct: 242 HCPVEIIL 249
>gi|148927710|ref|ZP_01811154.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
gi|147886940|gb|EDK72466.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
Length = 266
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 139/320 (43%), Gaps = 70/320 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN N + R N F F+ DPD++ LQE T
Sbjct: 1 MKIYSWNVNGI--RAVVNKGAFQKFVKEHDPDILCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVK---------------KCFQ 146
KA R + I + P + + W S Y+GTA+ K K ++
Sbjct: 38 KAERGQAEIDL-----PHY--IENWNSAVKKGYSGTAIFSKTQPLSIINGFPEDIIKKYK 90
Query: 147 PKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
+ + +GRV+ AEFE FY++ Y PN+ +E R + WD +V Q
Sbjct: 91 VEGDVYGDPNKEGRVMAAEFEDFYIVTVYTPNSK-RELTRLTLREKHWDPAFLAYVKQLE 149
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I+CGDLNV+H E D++ P+ + G+ GFT ER+ F L
Sbjct: 150 KTKPVIFCGDLNVAHTEDDLARPD---------------TNHGEHGFTDEEREGFQKFLD 194
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
G +D +R + + + W+ + R RIDYF+VS LK ++ + ++
Sbjct: 195 AG-FVDTFRMFTPKGNGHYTW-WTHWANARARNVGWRIDYFLVSHALKSKVKSAKIHA-- 250
Query: 326 IELEGFYGSDHCPVSLELSE 345
GSDHCP+S+EL +
Sbjct: 251 ----DVMGSDHCPISIELGK 266
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 144/312 (46%), Gaps = 73/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ VTWN N L + F +F D DV+ LQE ++
Sbjct: 1 MRLVTWNVNGLRACLGKG---FLDFFQRVDADVVCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ +++ AL P Y+++W+ A+ K Y+GTA+ + +P V+ +
Sbjct: 39 ---QPDQI----ALELP---GYRLFWNSAEKKGYSGTAVFTR--VEPLSVTCGIGLDAHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI AEF+ F+L+ Y PN + E R +W+ + ++++ K P++ CGD
Sbjct: 87 HEGRVITAEFDGFFLVCCYTPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P K + G GF+ ER + +L G D +R
Sbjct: 145 LNVAHEEIDLKNP---------------KSNRGSAGFSDQERGKMTELLSSG-FTDTFRA 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIELEGF 331
L+ ++ + WS + RIDYFIVS+ L +D II E++
Sbjct: 189 LYPDRTGAYTW-WSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVE--------- 238
Query: 332 YGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 -GSDHCPVELVL 249
>gi|332797757|ref|YP_004459257.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
gi|332695492|gb|AEE94959.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
Length = 247
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 140/307 (45%), Gaps = 66/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L + F + I +F+ D++ QE++ P + Q L
Sbjct: 1 MRLISWNVNGLKAIMSKG---FIDIIKSFNADILMFQEIKTDVI-----PLDLQSL---- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
Y+I+ A K Y+GT + + P VS+ L K
Sbjct: 49 --------------------GYEIYVFPAKRKGYSGTMTMTR--IHPISVSYGLGKEEYD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDL 216
++GRVI+ E+ +Y++NTY PN G E + +++ ++FV+ KP I CGD
Sbjct: 87 SEGRVIILEYPEYYVINTYFPNAG--EGLKRLDFKLSFNRDFEKFVISLK-KPCIICGDF 143
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID++ P K++ GFT ER+ F L G +D YR
Sbjct: 144 NVAHQEIDIARP---------------KDNVNHAGFTPQEREWFSHFLSLG-YVDTYRMF 187
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
KE +S+ + K G RIDY +VSE LK R+I ++ LE GSDH
Sbjct: 188 VKEGGHYSWWSYRFHAREKNIG--WRIDYCVVSESLKGRVIKADI------LEKVMGSDH 239
Query: 337 CPVSLEL 343
P+ LE+
Sbjct: 240 APILLEI 246
>gi|257437815|ref|ZP_05613570.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257199738|gb|EEU98022.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 263
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 133/310 (42%), Gaps = 62/310 (20%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
K+ +K ++WN N L + + +F+ D D+ ++QE +M + AP+ + E
Sbjct: 10 KEQDMKLISWNVNGLRACLTH---DFAASFAALDADIFSVQETKMQPGQADFAPEGYTEY 66
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 157
+S Y+GTA K E+
Sbjct: 67 T----------------------------YSAEKKGYSGTACWCKTAPLAVTTGIGREEH 98
Query: 158 D--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
D GRV+ E+ FYL+N Y PN+ ++ R W+ + ++L+ K P+I CG
Sbjct: 99 DHEGRVLTLEYPGFYLVNCYTPNS--QDGLKRLDYRMTWEDAFRAYLLELDAKKPVILCG 156
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ + AK N GFT ER + +L G D +R
Sbjct: 157 DLNVAHTEIDIKN------AKTNRM---------SAGFTDQERAKMTELLAAG-FTDTFR 200
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+H + + +S WS + + RIDYFIVS + D++ A E+ +G
Sbjct: 201 AVHPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKVTAAEIHNE------VFG 251
Query: 334 SDHCPVSLEL 343
SDHCPV L +
Sbjct: 252 SDHCPVELVI 261
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 142/310 (45%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V F +F + D+ ++QE ++
Sbjct: 1 MKLISWNVNGIRACVNKG---FLDFFNKENADIFSIQETKV------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL---- 154
+EE++ PF+ Y +W+ A K Y+GTA+ KK +P + + +
Sbjct: 39 ---QEEQI---------PFQLEGYYQYWNFAQKKGYSGTAIFSKK--EPLNIRYGIGIEE 84
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 213
+GRVI EFE FY++ Y PN+ + E + R KW+ ++ KP+I+C
Sbjct: 85 HDQEGRVITLEFEKFYMVTVYTPNS--QRELARLEYRMKWEDDFLHYLRDLEQLKPVIFC 142
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H+EID+ +P+ NK + GF+ ER + ++ +G D +
Sbjct: 143 GDLNVAHKEIDLKNPK------------ANKNN---AGFSAEERGKLTRVMDQG-FTDTF 186
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R+ + E+ + WS + RIDYF VS ELKD++ + G
Sbjct: 187 RYFYPEQ-TEAYTWWSYMFNARANNAGWRIDYFCVSAELKDQL------KDAVIYNDVLG 239
Query: 334 SDHCPVSLEL 343
SDHCP+ LE+
Sbjct: 240 SDHCPIGLEI 249
>gi|104773315|ref|YP_618295.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513293|ref|YP_812199.1| exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|385814875|ref|YP_005851266.1| Exodeoxyribonuclease A [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|103422396|emb|CAI96933.1| Exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116092608|gb|ABJ57761.1| Exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|325124912|gb|ADY84242.1| Exodeoxyribonuclease A [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 275
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 140/323 (43%), Gaps = 71/323 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + + DPDV+ALQE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
D F Y W A YAGT L KK +P
Sbjct: 58 AALADL------------------FPEYDFVWRSSMEPARKGYAGTMFLYKKGLEPVVTR 99
Query: 152 FSL---EKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 203
+ E D GR++ EF FY+ Y PN G N R R++WDK + ++
Sbjct: 100 PEIGAPEPMDFEGRILTLEFPDFYVTQVYTPNAG-----NGLVRLGDRQEWDKCYRAYLE 154
Query: 204 QCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ K P++ GD N +++EID+ HPE + GFT ER FG
Sbjct: 155 ELDKKKPVLASGDFNAAYQEIDLKHPE---------------NNHHSAGFTDEERAGFGQ 199
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G D +R +H + ++ +SW + K RIDY++VS L D++ E
Sbjct: 200 LLAAG-FTDTFRQIHGQ--VEGVYSWWAQRVRTAKANNSGWRIDYWLVSNRLADQVEKSE 256
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
M +E +DHCP+ LE+
Sbjct: 257 M------IETGERADHCPILLEV 273
>gi|330834656|ref|YP_004409384.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
gi|329566795|gb|AEB94900.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
Length = 256
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 144/308 (46%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN NSL + E I + + DV+ QE++ + P + Q L
Sbjct: 8 LKILSWNVNSLKSAIAKGLMEI---IKSEEYDVLMFQEIK-----TNQLPLDFQSL---- 55
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK----T 157
P++ Y I S Y+GT L + +P V++ + K
Sbjct: 56 -----------------PYRAY-INPSKQKRGYSGTLTLTR--IEPISVTYGIGKEEFDV 95
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLN 217
+GRVI EF++ +++N Y PN G + F+ R +++ QE+V GKP + CGD N
Sbjct: 96 EGRVISTEFKSMFVINVYFPNAGEGLKRLDFKLR--FNRAFQEYVASL-GKPSVICGDFN 152
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+HEEID++ P K++ GFT ERK F L G +D +R
Sbjct: 153 VAHEEIDIARP---------------KDNVNHAGFTPEERKWFHEFLLSG-FVDTFRLFV 196
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
KE +S+ + K G RIDY +VS+EL+ ++ E+ LE GSDH
Sbjct: 197 KEPGHYSWWSYRFHAREKNIG--WRIDYCVVSKELESKVKKAEI------LEKVMGSDHA 248
Query: 338 PVSLELSE 345
PV++E+SE
Sbjct: 249 PVTVEISE 256
>gi|339446107|ref|YP_004712111.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
gi|338905859|dbj|BAK45710.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
Length = 285
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 144/346 (41%), Gaps = 107/346 (30%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L + F + + D D++ALQE ++ +
Sbjct: 1 MRFISWNVNGLRAVLNKG---FEDIVCEIDADIVALQETKLQEGQA-------------- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
L P ++ Y WS A K Y+GTA+ K+ QP +V L
Sbjct: 44 ------------TLDLPQYREY---WSYAQKKGYSGTAVFCKE--QPLQVLHGLGSDYLD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--------- 207
+GR++ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 87 AEGRIVALEFPGFWFVDVYTPNA--QNELARIAHRMQWDDAFRDF---CKGLEEGVLPAG 141
Query: 208 -----------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 238
KP++ CGD NV+H+EID+ +P
Sbjct: 142 VPVQRPAPGEGHVTISELPLTQPGESTDPKPVVMCGDFNVAHQEIDLKNPG--------- 192
Query: 239 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYR 297
PN+ G+ GF+ ER +F +L G +D++R LH D+ +S WS +
Sbjct: 193 ---PNR---GKAGFSDEERGKFTDLLDAG-FVDSFRHLH--PDVTGAYSWWSYRFKARQT 243
Query: 298 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
RIDYF+VSE L +I + + + YGSDHCPV +EL
Sbjct: 244 NAGWRIDYFLVSEALAPKIESACI------YDEVYGSDHCPVGIEL 283
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis]
gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis]
Length = 332
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 136/307 (44%), Gaps = 65/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
K +WN SL N E+ + PDV+ QE + K+AP
Sbjct: 78 FKISSWNVVSLKSITNKNGMEY---VRRESPDVMCFQETK---CSEKNAPS--------- 122
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
E KL P + Y + + YAG AL K +P V + T
Sbjct: 123 ----ESKL--------PGYHRY--FAAGVKEGYAGVALYSK--LKPLSVKIGIGHKEHDT 166
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GRVI AE+E FYL+ Y PN G + +R KWD + ++ + S KP+I CGDL
Sbjct: 167 EGRVITAEYEDFYLVTAYVPNAG--RGLVTLPKRLKWDVAFKGYLKKLDSEKPVILCGDL 224
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P + GFT ER F +L G ID +R L
Sbjct: 225 NVAHNEIDLKNPS---------------TNTKTAGFTQEERDGFTKLLNAG-FIDTFRKL 268
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ K+ + W N IG R + R+DYF+VSE + + C+ + + YGS
Sbjct: 269 YPNKEGAYTY-W--NYIGNARSRNAGWRLDYFVVSERIMSTV--CD----SVIRKEVYGS 319
Query: 335 DHCPVSL 341
DHCP++L
Sbjct: 320 DHCPITL 326
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 138/312 (44%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F D D LQE ++
Sbjct: 1 MKFISWNVNGLRAIVKKG---FVEIFEELDADFFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
+E ++ L F Y +W+ A+ K Y+GTA+ K +P VS+ + K
Sbjct: 39 ---QEGQIEL-------DFPGYYDYWNYAEKKGYSGTAIFTKH--KPLDVSYGIGKPEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI + +Y++ Y PN+ K E R +W+ Q ++ + S KP+I CGD
Sbjct: 87 QEGRVITLSYPNYYVVTCYTPNS--KSELKRLDYRMQWEDDFQLYLKKLDSEKPVILCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HE ID+ + K + GF+ ER +F A+L G ID +R+
Sbjct: 145 LNVAHENIDLKNW---------------KTNQLSAGFSKEERMKFSALLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFSWSGNPI-GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D++ ++W + RIDYF VS L+D + + L+ GS
Sbjct: 189 FY--PDLEGAYTWWNYRFNARKTNAGWRIDYFCVSTRLQDHLQEARI------LDDIVGS 240
Query: 335 DHCPVSLELSEA 346
DHCPV L L E
Sbjct: 241 DHCPVELILKET 252
>gi|291523803|emb|CBK89390.1| exodeoxyribonuclease III [Eubacterium rectale DSM 17629]
Length = 251
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 69/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L V+ F +F + D D +QE ++ A D P HQ
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDVDFFCIQESKLQAGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKN--EPLSVSYGIGIEEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+GRVI E++ FYL+ Y PN+ + E R +W+ +E++ KP++ CG
Sbjct: 86 DKEGRVITLEYDNFYLVTCYTPNS--QNELKRLPYRMQWEDDFREYLKALDAQKPVVLCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P K + GF+ ER + +L G D +R
Sbjct: 144 DLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGSG-FTDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ + D + +S WS + + RIDYFI S+ + D++ + + G
Sbjct: 188 YFY--PDAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLKKAAIHTDVL------G 239
Query: 334 SDHCPVSLEL 343
SDHCPV +++
Sbjct: 240 SDHCPVEVDI 249
>gi|29377212|ref|NP_816366.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227554220|ref|ZP_03984267.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|422714823|ref|ZP_16771549.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
gi|422717962|ref|ZP_16774635.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|29344678|gb|AAO82436.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227176667|gb|EEI57639.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|315573773|gb|EFU85964.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|315580287|gb|EFU92478.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
Length = 251
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 136/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y WS A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WSYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 133/305 (43%), Gaps = 61/305 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 454 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 501
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--- 158
+ Y +W YAG A+ K P V + + +
Sbjct: 502 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNEEFDD 542
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CGD+
Sbjct: 543 VGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDM 600
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NVSH ID+ +P K + GFT ER + +L G +D +R L
Sbjct: 601 NVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHL 644
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ F W+ + R R+DY +VSE +++ E++ + GSDH
Sbjct: 645 YPDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDH 697
Query: 337 CPVSL 341
CP+++
Sbjct: 698 CPITI 702
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 133/287 (46%), Gaps = 62/287 (21%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M ++E+ ++ FK
Sbjct: 5 FMDFFNSVDADVFCIQESKM----------------------QQEQ-------NTFEFKG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----KTDGRVILAEFETFYLLNTYAP 177
Y +W+ A K Y+G KK +P VS+ ++ +GRV+ EFE+FYL+N Y P
Sbjct: 36 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIEEHDKEGRVVTCEFESFYLVNVYTP 93
Query: 178 NNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 236
N+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 94 NS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------- 143
Query: 237 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 296
K + GF+ ER++F +L G ID +R+ + K+ + WS +
Sbjct: 144 -------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARD 194
Query: 297 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 195 KDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|218283512|ref|ZP_03489502.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
gi|218215780|gb|EEC89318.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
Length = 249
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 140/313 (44%), Gaps = 75/313 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F++ + D D + +QE +K P+ + D+
Sbjct: 1 MKLISWNVNGIRAVMKKG---FTDVLDELDADFVCIQE-------TKAHPEQIESYTDNY 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE----KT 157
YQ S Y+GT +L KK +P + + +
Sbjct: 51 P--------------------YQYINSAKRKGYSGTMVLCKK--KPLSIKYGINVPEFDD 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLN 217
+GR+I E+ FYL+ Y P +G + R +WD+ + L+ KP++ CGD N
Sbjct: 89 EGRIITLEYPEFYLVTVYTPTSG--DGLMRLDYRLEWDEAFGNY-LKSLDKPVMACGDFN 145
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V++ EIDV +P+ G GF+ ER F L L+D YR L+
Sbjct: 146 VANNEIDVPYPDMIR---------------GTAGFSDEERDSFKENLL-SNLVDTYRVLN 189
Query: 278 KEKDMDCGFSWSGNPIGKYRGKR------MRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
E +SW YRG+ MR+DY++VS +LKD+I+ ++ L+
Sbjct: 190 PET---IQYSW-----WSYRGQARENNIGMRLDYWLVSNDLKDKIVDSKI------LDDI 235
Query: 332 YGSDHCPVSLELS 344
YGSDHCP+ L+++
Sbjct: 236 YGSDHCPIMLDIN 248
>gi|346314587|ref|ZP_08856106.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124043|ref|ZP_09537885.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|422327142|ref|ZP_16408169.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
gi|345906322|gb|EGX76051.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659875|gb|EHO25135.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|371663836|gb|EHO29020.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
Length = 254
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 138/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
++ V+WN N + ++ F +F D DV +QE +M P + P +Q +
Sbjct: 1 MRLVSWNVNGIRACMQKG---FMDFFKEIDADVFCIQETKMQPGQLEIETPGYYQYMNSA 57
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EK 156
K Y+GT + K+ +P V++ L
Sbjct: 58 EKKG-----------------------------YSGTMVFSKQ--KPLSVTYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E+E FYL+ Y PN+ K+ R W+ + ++ + + K ++ CGD
Sbjct: 87 HEGRVITCEYEDFYLVCVYTPNS--KDGLLRLDYRMVWEDAFRAYLHKLNETKSVLVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + +L+ G ID++R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSVLLESG-FIDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E++ + WS + + RIDYF+VSE+ K+ I + YGSD
Sbjct: 189 LYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKEAIREARIH------TDIYGSD 241
Query: 336 HCPVSLEL 343
HCPVSLE
Sbjct: 242 HCPVSLEF 249
>gi|13540877|ref|NP_110565.1| exonuclease III [Thermoplasma volcanium GSS1]
gi|14324259|dbj|BAB59187.1| exodeoxyribonuclease [Thermoplasma volcanium GSS1]
Length = 252
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 135/302 (44%), Gaps = 58/302 (19%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N L +K+ + I D IA+QE ++ D K
Sbjct: 6 KFLSWNVNGLRAVIKSGGLDL---IRNGDYFAIAMQETKV-----------------DVK 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGRVI 162
+ EE L + + P K Y+GT L ++ +P VS+ E +GR++
Sbjct: 46 SVPEEMYHLGYHVYNNPAKR---------KGYSGTMTLSRE--KPIDVSYGFESEEGRIL 94
Query: 163 LAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHE 221
EF+ FY +N Y PN+ + + +DK+ + KPLI CGD NV+HE
Sbjct: 95 NLEFDNFYFINAYFPNS--QHGLTRLDLKLDFDKKFLGYANDLRKKKPLIICGDFNVAHE 152
Query: 222 EIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD 281
EID++ P K++ GFTI ER L G +D +R +
Sbjct: 153 EIDIARP---------------KDNEHNAGFTIEERTWMSQFLSSG-YVDTFRLFTTDGG 196
Query: 282 MDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 341
+S+ N K G RIDYF+VS+++KD++ A + LE GSDH PV L
Sbjct: 197 HYSWWSYRFNAREKNIG--WRIDYFVVSDDIKDKVKASRI------LENVKGSDHAPVEL 248
Query: 342 EL 343
E+
Sbjct: 249 EI 250
>gi|350645454|emb|CCD59806.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 281
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 114/245 (46%), Gaps = 54/245 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
K V+WN N + +KNN E +I + D+ +QE + P
Sbjct: 65 FKIVSWNVNGIRAVIKNNGME---YIKKENADIFCIQETKCP------------------ 103
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKT--- 157
L + S +YQ +WS AD + YAGTAL K P KV++ + K
Sbjct: 104 ---------LHKIPSEAKVPSYQSFWSSADKAGYAGTALFSK--ISPIKVTYGIGKKMHD 152
Query: 158 -DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI AE++ FYL+ Y PN+G + R ++WD E++ + S KP+I CGD
Sbjct: 153 DEGRVITAEYDKFYLVTAYVPNSGQGLIRLPY-REKEWDPDFLEYLRKLDSTKPVIVCGD 211
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID++ PE + GFT ER F +L LID YR
Sbjct: 212 LNVAHEEIDLARPE---------------TNHKTAGFTDQERSGFTKLLSSANLIDTYRH 256
Query: 276 LHKEK 280
+ ++
Sbjct: 257 FYPDR 261
>gi|313114917|ref|ZP_07800415.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622794|gb|EFQ06251.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 250
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 137/308 (44%), Gaps = 66/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + + F+ D D+ ++QE +M + AP + E
Sbjct: 1 MKLISWNVNGLRACLTHG---FAESFAALDADIFSVQETKMQPGQADFAPDGYTEYT--- 54
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTD- 158
+S Y+GTA ++ QP V+ +E+ D
Sbjct: 55 -------------------------YSAEKKGYSGTACWCRE--QPLSVTTGIGIEQHDH 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
GRV+ E+ F+L+N Y PN+ ++ R +W+ + ++L K P+I CGDL
Sbjct: 88 EGRVLTLEYPGFWLVNCYTPNS--QDGLKRLDYRMEWEDAFRAYLLALDAKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ + +K + GFT ER + +L G D++R L
Sbjct: 146 NVAHREIDIKN---------------DKTNHMSAGFTDQERGKMTELLDAG-FADSFRVL 189
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H + + +S WS + + RIDYFIVS + D+I A E+ +GSD
Sbjct: 190 HPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADKIRAAEIHNE------IFGSD 240
Query: 336 HCPVSLEL 343
HCPV L++
Sbjct: 241 HCPVELDI 248
>gi|406837825|ref|ZP_11097419.1| exodeoxyribonuclease, partial [Lactobacillus vini DSM 20605]
Length = 181
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 26/189 (13%)
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GRVI E+E FYL++ Y PN+ K + F R KW+ Q ++ + KP+I CGDL
Sbjct: 18 EGRVITLEYEQFYLVDCYTPNSQQKLKRLDF--RLKWELAFQTYLKKLDQTKPVILCGDL 75
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H++ID+ + K + GF+ ER+ ++L +G ID++RFL
Sbjct: 76 NVAHQKIDLKNW---------------KTNRHNAGFSDQERQAMTSLLDKG-FIDSFRFL 119
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
H E + WS + RIDYFIVS+ LK+RI+ ++ L YGSDH
Sbjct: 120 HPETTGIYSW-WSYRFHARENNAGWRIDYFIVSDRLKNRILKADI------LTNIYGSDH 172
Query: 337 CPVSLELSE 345
CPV LEL E
Sbjct: 173 CPVELELKE 181
>gi|432942682|ref|XP_004083031.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Oryzias latipes]
Length = 298
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 131/253 (51%), Gaps = 38/253 (15%)
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEK 156
D+TK + ++ + ++ P K +W+++D K Y+G A+L K +P KV++ + K
Sbjct: 76 DETKCAEKDLPAEITSMPEYPHK----YWAVSDDKEGYSGVAMLSKT--EPLKVTYGIGK 129
Query: 157 ----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 211
+GRVI AEF TF+L+ Y PN R+ WD Q ++ + KPL+
Sbjct: 130 EEHDKEGRVITAEFPTFFLVTAYVPNA--SRGLVRLDYRKTWDVDFQAYLTELDVQKPLV 187
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L G +D
Sbjct: 188 LCGDLNVAHQEIDLKNPK------------GNKKN---AGFTPEEREGFSQLLAAG-FVD 231
Query: 272 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
++R L+ E+ F W+ + + R+DYF++S L + +++ +
Sbjct: 232 SFRELYPEQANAYTF-WTYMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAM----- 285
Query: 332 YGSDHCPVSLELS 344
GSDHCP++L L+
Sbjct: 286 -GSDHCPITLHLA 297
>gi|430362273|ref|ZP_19427003.1| exonuclease III [Enterococcus faecalis OG1X]
gi|430366851|ref|ZP_19427621.1| exonuclease III [Enterococcus faecalis M7]
gi|429512184|gb|ELA01799.1| exonuclease III [Enterococcus faecalis OG1X]
gi|429516857|gb|ELA06332.1| exonuclease III [Enterococcus faecalis M7]
Length = 271
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 143/321 (44%), Gaps = 63/321 (19%)
Query: 29 TETSSEENSKK--DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG 86
TETS + K +K ++WN N L VK N F + D D LQE ++ A G
Sbjct: 6 TETSKSVSYLKGVSTMKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-G 61
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCF 145
D L P + Y W+ A+ K Y+GTA+ K+
Sbjct: 62 QID-------------------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEA 93
Query: 146 QPKKVSFSLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
+ +E D GRVI E+ F+++ Y PN+ + E R W+ + ++
Sbjct: 94 LSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLN 151
Query: 204 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ + KP+I CGDLNV+H++ID+ + K + GFT ER++F
Sbjct: 152 ELNQEKPVILCGDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTE 196
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+L G D +R+ + E + + WS + RIDYF+VSE L +R+++ ++
Sbjct: 197 LLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIH 254
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
+ GSDHCPV + L
Sbjct: 255 TDIL------GSDHCPVEVVL 269
>gi|295101467|emb|CBK99012.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii L2-6]
Length = 250
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 134/306 (43%), Gaps = 62/306 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + + +F+ D DV ++QE +M + AP+ + E
Sbjct: 1 MKLISWNVNGLRACLTH---DFAASFAALDADVFSVQETKMQPGQADFAPEGYTEYT--- 54
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--G 159
+S Y+GTA K +E+ D G
Sbjct: 55 -------------------------YSAEKKGYSGTACWCKTVPLSVTTGIGIEEHDHEG 89
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNV 218
RV+ E+ YL+N Y PN+ ++ R W+ + ++L+ K P+I CGDLNV
Sbjct: 90 RVLTLEYPESYLVNCYTPNS--QDGLKRLDYRMTWEDAFRAYLLELDAKKPVILCGDLNV 147
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+H+EID+ + AK N GFT ER + +L G D++R +H
Sbjct: 148 AHQEIDIKN------AKTNRM---------SAGFTDQERAKMTELLAVG-FTDSFRAIHP 191
Query: 279 EKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+ + +S WS + + RIDYFIVS + D+I A E+ +GSDHC
Sbjct: 192 D---EVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKIKAAEIHNE------VFGSDHC 242
Query: 338 PVSLEL 343
PV L++
Sbjct: 243 PVELDI 248
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 134/307 (43%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F + D D LQE ++ QE + D
Sbjct: 1 MKFISWNVNGLRAAVKKG---FLDVFNQLDADFFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
P + Y +W+ A+ K Y+GTA+ K+ + +E+ D
Sbjct: 46 -----------------PLEGYTQYWNYAEKKGYSGTAIFAKQPALSVQYGLGIEELDHE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GR+I E+ FYL+ Y PN + E R +W+ +E++ Q KP+I CGDLN
Sbjct: 89 GRLITLEYPEFYLVTCYTPNA--QSELKRIDFRLQWEAAFREYLHQLDEKKPVIICGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + PN+ G+ GF+ ER F +L G D +R+L+
Sbjct: 147 VAHQNIDLKNWR------------PNR---GKAGFSDEERNAFTELLNTG-FTDTFRYLY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL-KDRIIACEMQGHGIELEGFYGSDH 336
E + WS + RIDYF+VS L KD AC GSDH
Sbjct: 191 PETTGVYSW-WSYRFHARENNAGWRIDYFLVSNRLQKDIQEACIYT-------DILGSDH 242
Query: 337 CPVSLEL 343
CPV L L
Sbjct: 243 CPVGLTL 249
>gi|336392108|ref|ZP_08573507.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 257
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 140/308 (45%), Gaps = 66/308 (21%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ LKF++WN N L VK N F F D D +QE ++ A +
Sbjct: 2 NALKFISWNVNGLRAVVKKN---FMEFFEQQDADFFCIQETKLQAGQIE----------- 47
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL---- 154
L+ P + Y W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 48 ---------------LTLPGYYQY---WNYAERKGYSGTAIFTKH--EPLNVTYGMGVAE 87
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 213
+GR+I E++ FYLL Y PN+ K + + R W+ + ++ + K P+I+C
Sbjct: 88 HDQEGRLITLEYKDFYLLTCYTPNSQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVIFC 145
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HE ID+ + +K + GF+ ER +F +L G D++
Sbjct: 146 GDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERAKFSQLLSAG-FTDSF 189
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R+ + ++ +S+ N + RIDYF+ +++L+ ++ + L G
Sbjct: 190 RYFYPDQVTYSWWSYRFN--ARQNNAGWRIDYFVTADQLQPQLADAAI------LTDVLG 241
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 242 SDHCPVML 249
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium
fasciculatum]
Length = 1238
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 129/306 (42%), Gaps = 57/306 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN K F +++ PD++ LQE ++ A PK+
Sbjct: 115 IKIVSWNVAGFGACTKKG---FKDYLIKEQPDIVCLQETKIAVA---KVPKSE------- 161
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL--VKKCFQPKKVSFSLEKTDG 159
P Y + + + GTALL +K + S +G
Sbjct: 162 ---------------IPEGYTYHFNPCIEKTGHHGTALLTKIKPISITSGIGISKHDQEG 206
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEE---NSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
RV+ AEFE FY++N Y PN+G +E R ++WD +++ + KP++WCGD
Sbjct: 207 RVVTAEFEDFYVVNAYVPNSGVDRKEPLKRLGYRTKEWDVDFFKYMSDLNTKKPVVWCGD 266
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+++P K + GFTI ER F L G ID +R
Sbjct: 267 LNVAHTEIDLANP---------------KSNSRTAGFTIEERTSFSGHLNSG-FIDTHRH 310
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ K F WS + + R+DYFIV I A ++ GSD
Sbjct: 311 FNPGKTGTYTF-WSYMGGARAKNAGWRLDYFIVPATFIGSIAASFIRSK------VQGSD 363
Query: 336 HCPVSL 341
HCP+ +
Sbjct: 364 HCPIGI 369
>gi|300813916|ref|ZP_07094220.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511979|gb|EFK39175.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 275
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 144/325 (44%), Gaps = 75/325 (23%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + + + DPD+ A+QE ++P G K H+
Sbjct: 1 MKFISWNIDSLNAALTSSSNRAILTRAVLSSIRDEDPDLFAVQETKLPPTG---LSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV- 150
E+ + F++Y + A YAGT + KK + K
Sbjct: 58 EILE------------------KEFQDYSYVYVTSKEEARKSYAGTMIFYKKDLECKATY 99
Query: 151 -------SFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
S +E GR++ EF+ FY Y PN G + R+ WDK+ E+
Sbjct: 100 PEIGAPGSMDME---GRILTLEFKDFYFSTVYTPNAG--DGLKRLSDRQVWDKKYLEYCQ 154
Query: 204 QCS-GKPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 260
+ KPL+ CGD NV+H+EID+++P F+A GFT ER F
Sbjct: 155 ELDKNKPLVLCGDFNVAHKEIDLANPNNNHFSA-----------------GFTDEERMGF 197
Query: 261 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 318
+L +G +D +R ++ D++ ++W I K RIDYF+VS+ +KD++
Sbjct: 198 TNLL-DGGFVDTFRLIN--GDVEGKYTWWAQRIKTSKINNSGWRIDYFLVSQRIKDKVKK 254
Query: 319 CEMQGHGIELEGFYGSDHCPVSLEL 343
M G DH P+ LE+
Sbjct: 255 SHMMDSGQR------QDHTPIILEI 273
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 133/305 (43%), Gaps = 61/305 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 474
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--- 158
+ Y +W YAG A+ K P V + + +
Sbjct: 475 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNEEFDD 515
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CGD+
Sbjct: 516 VGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDM 573
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NVSH ID+ +P K + GFT ER + +L G +D +R L
Sbjct: 574 NVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHL 617
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ F W+ + R R+DY +VSE +++ E++ + GSDH
Sbjct: 618 YPDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDH 670
Query: 337 CPVSL 341
CP+++
Sbjct: 671 CPITI 675
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 133/305 (43%), Gaps = 61/305 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 474
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--- 158
+ Y +W YAG A+ K P V + + +
Sbjct: 475 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNEEFDD 515
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CGD+
Sbjct: 516 VGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDM 573
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NVSH ID+ +P K + GFT ER + +L G +D +R L
Sbjct: 574 NVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHL 617
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ F W+ + R R+DY +VSE +++ E++ + GSDH
Sbjct: 618 YPDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDH 670
Query: 337 CPVSL 341
CP+++
Sbjct: 671 CPITI 675
>gi|366166303|ref|ZP_09466058.1| exodeoxyribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 140/308 (45%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N + + F++F D D+ +QE ++ QE + +
Sbjct: 2 LKMISWNVNGIRAVMGKG---FTDFFQKEDADIFCIQETKV------------QEGQIEI 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
PF+ Y +W+ A+ K Y+G A+ K +P VS+ +
Sbjct: 47 -----------------PFEGYYKYWNYAEKKGYSGVAVFTK--IKPITVSYGIGIEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI EF+ +Y++ Y PN+ + R KW+ ++ KP+I CGD
Sbjct: 88 KEGRVITLEFDEYYVVTVYTPNS--QRGLTRLHYRMKWEDDFLSYLKSLERYKPVIVCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ NK++ GFT ER +F + + G ID +R+
Sbjct: 146 LNVAHKEIDLKNPQ------------SNKKN---AGFTEEERSKFDSYVNNG-FIDTFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ + WS + RIDYFIVSE +KDR+ + GSD
Sbjct: 190 FYPDR-IGVYTWWSYMFNSRQNNAGWRIDYFIVSERIKDRL------KDALVYSEITGSD 242
Query: 336 HCPVSLEL 343
HCPV + L
Sbjct: 243 HCPVGILL 250
>gi|333394549|ref|ZP_08476368.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 257
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 140/308 (45%), Gaps = 66/308 (21%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ LKF++WN N L VK N F F D D +QE ++ A +
Sbjct: 2 NALKFISWNVNGLRAVVKKN---FMEFFEQQDADFFCIQETKLQAGQIE----------- 47
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL---- 154
L+ P + Y W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 48 ---------------LTLPGYYQY---WNYAERKGYSGTAIFTKH--EPLNVTYGMGVAE 87
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 213
+GR+I E++ FYLL Y PN+ K + + R W+ + ++ + K P+I+C
Sbjct: 88 HDQEGRLITLEYKDFYLLTCYTPNSQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVIFC 145
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+HE ID+ + +K + GF+ ER +F +L G D++
Sbjct: 146 GDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERAKFSQLLAAG-FTDSF 189
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R+ + ++ +S+ N + RIDYF+ +++L+ ++ + L G
Sbjct: 190 RYFYPDQVTYSWWSYRFN--ARQNNAGWRIDYFVTADQLQPQLADAAI------LTDVLG 241
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 242 SDHCPVML 249
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 142/317 (44%), Gaps = 75/317 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSK-DAPKNHQEL 97
+KF++WN N L VK F+ TF + D +QE ++ A + D P +Q
Sbjct: 1 MKFISWNVNGLRAIVK------KGFVETFQELNADFFGIQETKLQAGQIELDLPGYYQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
+W+ A+ K Y+GTAL K QP V + ++
Sbjct: 53 ----------------------------YWNYAERKGYSGTALFTKH--QPLNVIYGIDA 82
Query: 157 ----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 211
+GR I E+ FY+L Y PN+G + F R W+ F+ + KP+I
Sbjct: 83 PEFDHEGRAITLEYPDFYVLTCYTPNSGSGLKRLDF--RLGWEHAFLTFIQKLDAQKPVI 140
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
+CGDLNV+H EID+ +P K + GFT ER + A+L G D
Sbjct: 141 FCGDLNVAHTEIDLKNP---------------KTNHHNAGFTDEERAKMTALLAAG-YTD 184
Query: 272 AYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 330
+R+ + D+ +S WS + RIDYFI S+ L++ + ++ L+
Sbjct: 185 TFRYFN--PDVTERYSWWSYRFHARDNNAGWRIDYFITSQRLQNHLQDAKI------LDQ 236
Query: 331 FYGSDHCPVSLELSEAS 347
GSDHCPV L++++ +
Sbjct: 237 IMGSDHCPVELDVTDLT 253
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 148/318 (46%), Gaps = 73/318 (22%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 326
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF- 152
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 327 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 363
Query: 153 -----SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 206
S T+GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 364 TGLSGSDHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEK 422
Query: 207 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
KP++ GDLN +HEEID+ +P NK GFT ER+ FGA +
Sbjct: 423 SKPVVLTGDLNCAHEEIDIFNP------------AGNKR---SAGFTEEERQSFGANFLD 467
Query: 267 GRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
+D +R K+ G++ W G+ K R+DYF+VS+ IA +
Sbjct: 468 KGFVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSY 519
Query: 326 IELEGFYGSDHCPVSLEL 343
I L GSDHCP+ L L
Sbjct: 520 I-LPDINGSDHCPIGLIL 536
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 144/312 (46%), Gaps = 73/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ VTWN N L + F +F D DV+ LQE ++
Sbjct: 1 MRLVTWNVNGLRACLGKG---FLDFFQRVDADVVCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ +++ AL P Y+++W+ A+ K Y+GTA+ + +P V+ +
Sbjct: 39 ---QPDQI----ALELP---GYRLFWNSAEKKGYSGTAVFTR--VEPLSVTCGIGLDAHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI AEF+ F+L+ Y PN + E R +W+ + ++++ K P++ CGD
Sbjct: 87 HEGRVITAEFDGFFLVCCYTPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HEEID+ +P + + G GF+ ER + +L G D +R
Sbjct: 145 LNVAHEEIDLKNP---------------RSNRGNAGFSDQERGKMTELLSSG-FTDTFRA 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIELEGF 331
L+ ++ + WS + RIDYFIVS+ L +D II E++
Sbjct: 189 LYPDRTGAYTW-WSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVE--------- 238
Query: 332 YGSDHCPVSLEL 343
GSDHCPV L L
Sbjct: 239 -GSDHCPVELVL 249
>gi|348027153|ref|YP_004766958.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
gi|341823207|emb|CCC74131.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
Length = 254
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 135/306 (44%), Gaps = 63/306 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N L +K F + D DV LQE ++ AG D
Sbjct: 6 KFISWNVNGLRAVMKKG---FLDIFQALDADVFCLQETKL-QAGQID------------- 48
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD--G 159
L P ++ Y W+ AD K Y+GTA+ + + +++ D G
Sbjct: 49 ------------LDLPGYEQY---WNYADRKGYSGTAIFTRLAPLSVRYGMGIDEHDHEG 93
Query: 160 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNV 218
R+I EF +Y + Y PN+ + E R KW+ ++++L KP+I CGDLNV
Sbjct: 94 RLITLEFPDYYFVTCYTPNS--QSELARLPYRMKWEDDFRQYLLDLHQEKPVIVCGDLNV 151
Query: 219 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 278
+HEEID+ +P K + GF+ ER++ +L G D +R+ +
Sbjct: 152 AHEEIDLKNP---------------KTNRKNAGFSDEERQKMTDLLAAG-FTDTWRYFY- 194
Query: 279 EKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
D+ +S WS + RIDYF+ +++L R+ + GSDHC
Sbjct: 195 -PDVTGVYSWWSYRFKARQNNAGWRIDYFLTTKDLDSRLAKASI------YTDITGSDHC 247
Query: 338 PVSLEL 343
PV LEL
Sbjct: 248 PVGLEL 253
>gi|319939581|ref|ZP_08013940.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
gi|319811170|gb|EFW07476.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
Length = 275
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 138/321 (42%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPT---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L ++ L F NYQ+ W A YAGT L K P ++
Sbjct: 57 -------------LTILEEL----FPNYQLTWRSSIDPARKGYAGTMFLYKNNLTPI-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F S +GR+I EF+ F++ Y PN G + R+ WD++ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDQKYADYLTTL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DEKKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|293400493|ref|ZP_06644638.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305519|gb|EFE46763.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 253
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F +F D D+ +QE +M G D
Sbjct: 3 MKMVSWNVNGIRACMTKG---FMDFFQEIDADIFCIQETKMQP-GQLD------------ 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
+++P + YQ S Y+GT + K+ +P V++ L
Sbjct: 47 -------------IATPGY--YQYINSADKKGYSGTMVFTKE--KPIAVTYDLGIDEHDH 89
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 216
+GRVI E+E FYL+ Y PN+ K+ R +W+ + ++ K +I CGDL
Sbjct: 90 EGRVITCEYENFYLVCVYTPNS--KDGLLRLDYRMQWEDDFRAYLNALKEKKSVIVCGDL 147
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER + + + G ID++R+L
Sbjct: 148 NVAHKEIDLKNP---------------KTNRRNAGFTDEERAKMTTLQQSG-FIDSFRYL 191
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ E++ + WS + + RIDYF+VSE+ KD+I Q I + F GSDH
Sbjct: 192 YPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDKI-----QEASIHTDVF-GSDH 244
Query: 337 CPVSLEL 343
CPVSL++
Sbjct: 245 CPVSLDI 251
>gi|422844657|ref|ZP_16891367.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|325685174|gb|EGD27297.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 275
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 141/319 (44%), Gaps = 63/319 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + + DPDV+ALQE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL- 154
D E + R+ P K Y AGT L KK P +
Sbjct: 58 AALADLFP---EYYFVWRSSMEPARKGY-----------AGTMFLYKKGLDPVVTRPEIG 103
Query: 155 --EKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCSG 207
E D GR++ EF FY+ Y PN G N R R++WDK + ++ +
Sbjct: 104 APEPMDFEGRILTLEFPDFYVTQVYTPNAG-----NGLVRLGDRQEWDKCYRAYLEELDK 158
Query: 208 K-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
K P++ GD N +++EID+ HPE + GFT ER FG +L
Sbjct: 159 KKPVLASGDFNAAYQEIDLKHPE---------------NNHHSAGFTDEERAGFGQLLAA 203
Query: 267 GRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
G D +R +H + ++ +SW + K RIDY++VS L D++ EM
Sbjct: 204 G-FTDTFRQIHGQ--VEGVYSWWAQRVRTAKANNSGWRIDYWLVSNRLADQVEKSEM--- 257
Query: 325 GIELEGFYGSDHCPVSLEL 343
+E +DHCP+ LE+
Sbjct: 258 ---IETGERADHCPILLEI 273
>gi|407016220|gb|EKE29973.1| Exodeoxyribonuclease III Xth [uncultured bacterium (gcode 4)]
Length = 255
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 140/307 (45%), Gaps = 59/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + ++ F ++I PD+IALQEV+ +D
Sbjct: 1 MKFISWNVNWIRAAIQKG---FLDYINNEKPDIIALQEVKAT--------------EDQF 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
A + +++ + KN+ Y+ TA+ K+ +P VS+ L
Sbjct: 44 PARMDMEMMWYSVYWNSASKNW----------YSWTAVFTKE--KPLSVSYWLWMEEHDN 91
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+ R+I E+E FY + Y PN+ K E + R+ WD + + + KP+ C DL
Sbjct: 92 EWRIITVEYEKFYFVTVYTPNS--KRELERLEYRQLWDSLFLDHMRRLEAIKPIFVCWDL 149
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+++P+ PN+ FT ER F L G ID +RF
Sbjct: 150 NVAHKEIDLTNPK------------PNR---WNAWFTDEERMGFQKFLDAG-FIDTFRFF 193
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +K + + WS + R RIDYF+ S LK+ + + ++ GSDH
Sbjct: 194 YPDKAGEYSW-WSNFANARSRNIGWRIDYFLASWILKENL------KNAFIMQQTLGSDH 246
Query: 337 CPVSLEL 343
CPV +E+
Sbjct: 247 CPVWIEV 253
>gi|373452187|ref|ZP_09544104.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
gi|371967081|gb|EHO84557.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
Length = 251
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F +F D D+ +QE +M G D
Sbjct: 1 MKMVSWNVNGIRACMTKG---FMDFFQEIDADIFCIQETKMQP-GQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
+ +P + Y + AD K Y+GT + K+ +P V++ L
Sbjct: 45 -------------IVTPGYYQYM---NSADKKGYSGTMVFTKE--KPIAVTYDLGIDEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
+GRVI E+E FYL+ Y PN+ K+ R +W+ + ++ K +I CGD
Sbjct: 87 HEGRVITCEYENFYLVCVYTPNS--KDGLLRLDYRMQWEDDFRAYLNALKEKKSVIVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + + + G ID++R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERAKMTTLQQSG-FIDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E++ + WS + + RIDYF+VSE+ KD+I Q I + F GSD
Sbjct: 189 LYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDKI-----QEASIHTDVF-GSD 241
Query: 336 HCPVSLEL 343
HCPVSL++
Sbjct: 242 HCPVSLDI 249
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 140/306 (45%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKCISWNVNGIRACVQKG---FMDFFQEADADIFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+E +L L +P + Y W+ A+ K Y+GTA+ KK +E+ D
Sbjct: 39 ---QEGQL----ELETPGYFQY---WNYAERKGYSGTAVFTKKEPLSFTCGIGIEEHDKE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 217
GRVI EFE FY + Y PN+ + E R +W+ ++ + KP+I+CGDLN
Sbjct: 89 GRVITLEFEEFYFVTVYTPNS--QSELARLSYRMEWEDAFLAYLKKLEEKKPVIFCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+ EEID+ +P K + GFT ER++F I G +D +R+ +
Sbjct: 147 VAAEEIDLKNP---------------KTNRKNAGFTDEEREKFRKIKASG-FVDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+++ + WS + + RIDYF VS+ LK+R+ + + GSDHC
Sbjct: 191 PDEEGIYSW-WSYRFRAREKNAGWRIDYFCVSQSLKERLEDARIHTDVM------GSDHC 243
Query: 338 PVSLEL 343
PV L+L
Sbjct: 244 PVELDL 249
>gi|301096360|ref|XP_002897277.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
gi|262107161|gb|EEY65213.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
Length = 362
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 137/325 (42%), Gaps = 71/325 (21%)
Query: 7 PIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWP-EFSN 65
PI E AK A PS +D S ++ K V WN N L +K +
Sbjct: 82 PISAELQAKIDAF-PSFED------VSRRSADDIDTKIVAWNVNGLRAVLKRDESVHLRA 134
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ DPD+ L E TK R+E L + P +Q
Sbjct: 135 YVAQEDPDIFCLSE---------------------TKICRDE---LQKLEDFLPQYEHQY 170
Query: 126 WWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD-----------------GRVILAEFET 168
W YA TA+ K +P V + D GR + EF
Sbjct: 171 WSCAIKKGYASTAIFTKT--KPLSVKDEIVVGDHDSKGVAKSANGGKDQEGRFLALEFPK 228
Query: 169 FYLLNTYAPNNGWKEEENSFQRRRKWDKRI-QEFVLQCSGKPLIWCGDLNVSHEEIDVSH 227
F+L++TY PN G K E F R +WDK + +E KP+IWCGDLNV+H+EID+ +
Sbjct: 229 FWLVHTYVPNAGGKLERLDF-RTTQWDKAMHREMKEMEKTKPVIWCGDLNVAHQEIDIHN 287
Query: 228 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 287
P K + GFT ER+ FG IL++G +D +R LH + F
Sbjct: 288 P---------------KGNHKSAGFTDEERESFGEILEDG-FVDTFRHLHPDTVEYSYFG 331
Query: 288 WSGNPIGKYRGKRMRIDYFIVSEEL 312
+ N K +G R+DYF+VSE+L
Sbjct: 332 YRHNMRAKNKG--WRLDYFVVSEKL 354
>gi|422731891|ref|ZP_16788239.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
gi|315162099|gb|EFU06116.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
Length = 251
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 137/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTGLLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 141/312 (45%), Gaps = 73/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK+ F+ TF D D +QE ++ A +++
Sbjct: 12 VKLISWNVNGLRAAVKHG------FVMTFNELDADFFCVQETKLQAG----------QIE 55
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE-- 155
D F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 56 LD-------------------FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGIGVP 94
Query: 156 --KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 212
+GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPLI+
Sbjct: 95 EFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPLIF 152
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGDLNV+HE ID+ + + + GFT ER +F +L G D
Sbjct: 153 CGDLNVAHENIDLKNW---------------RSNHHSAGFTDEERTKFDRLLAAG-YTDT 196
Query: 273 YR-FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 331
+R F + D+ +S+ G+ G RIDYFI S++L +++ +
Sbjct: 197 FRHFYPDQTDIYSWWSYRGHARDNNSG--WRIDYFITSQQLDSQLLNARIHNE------I 248
Query: 332 YGSDHCPVSLEL 343
+GSDHCPV L++
Sbjct: 249 FGSDHCPVELDI 260
>gi|422696461|ref|ZP_16754419.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
gi|315174931|gb|EFU18948.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
Length = 251
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 138/306 (45%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA++ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIVAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|300811911|ref|ZP_07092372.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497108|gb|EFK32169.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 139/323 (43%), Gaps = 71/323 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFIT----TFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + + DPDV+ALQE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
D F Y W A YAGT L KK P
Sbjct: 58 AALADL------------------FPEYDFVWRSSMEPARKGYAGTMFLYKKGLDPLVTR 99
Query: 152 FSL---EKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 203
+ E D GR++ EF FY+ Y PN G N R R++WDK + ++
Sbjct: 100 PEIGAPEPMDFEGRILTLEFPDFYVTQVYTPNAG-----NGLVRLGDRQEWDKCYRAYLE 154
Query: 204 QCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ K P++ GD N +++EID+ HP K + GFT ER FG
Sbjct: 155 ELDKKKPVLASGDFNAAYQEIDLKHP---------------KNNHHSAGFTDEERAGFGQ 199
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G D +R +H + ++ +SW + K RIDY++VS L D++ E
Sbjct: 200 LLAAG-FTDTFRQIHGQ--VEGVYSWWAQRVRTAKANNSGWRIDYWLVSNRLADQVEKSE 256
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
M +E +DHCP+ LE+
Sbjct: 257 M------IETGERADHCPILLEI 273
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 138/306 (45%), Gaps = 67/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F +F D D+ +QE +M + +P+ +
Sbjct: 1 MKLISWNVNGFRACLTKG---FGDFFAEADADIFCIQETKMQPDQADFSPEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL--EKTD- 158
++ + S Y+GTA+ KK +P V+F + E TD
Sbjct: 51 ---------------------HKYFHSAIKKGYSGTAVYTKK--EPLSVTFGINGEHTDE 87
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLN 217
GRVI E+E FY + Y PN + E R +++ ++ ++ + K P+I+CGDLN
Sbjct: 88 GRVITCEYEDFYFVGCYVPNA--QNELKRIDYRMEFEDAMRGYLSELDKKKPVIYCGDLN 145
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H EID+ +P K + G GF+ ER +F +L G D+YR L+
Sbjct: 146 VAHNEIDLKNP---------------KSNVGNAGFSDEERGKFTELLAAG-FSDSYRSLY 189
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
EK +SW K R K + RIDYF+VS+ R+ ++ L GSD
Sbjct: 190 PEK---IEYSWWSYRF-KAREKNIGWRIDYFVVSDRFMPRVKDSQI------LTDVTGSD 239
Query: 336 HCPVSL 341
HCPV L
Sbjct: 240 HCPVQL 245
>gi|440793147|gb|ELR14342.1| exodeoxyribonuclease III, putative, partial [Acanthamoeba
castellanii str. Neff]
Length = 384
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 140/338 (41%), Gaps = 82/338 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN SL V+ ++I +PDV+ LQE ++
Sbjct: 89 VKLISWNVFSLNAIVEKG--SLQHYIKEEEPDVLCLQETKL------------------- 127
Query: 102 KASREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSL----EK 156
+ + +L + P Y+ S A Y+G A+ K ++P +V +
Sbjct: 128 -TNSKIELFKGKTFHRPDIYQYEFHNCSTAIKGYSGVAMYSK--YRPLRVHHGIGVEEHD 184
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS---------- 206
+GRVI EF FYL+ +Y PN+G +E + R++W++ ++ ++L S
Sbjct: 185 NEGRVITLEFAGFYLVGSYIPNSG--DELKRLEYRQRWNRDMEAYLLSLSTSGLKAGLDV 242
Query: 207 ------------------GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 248
GKP+IWCGDLNV+HEEID+ P N Y
Sbjct: 243 HPHGHELEYRVLDESERKGKPVIWCGDLNVAHEEIDLHDPAN------NHYT-------- 288
Query: 249 QPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIV 308
GFT ER F ++K +D+YR H+ WS + R R+DYF+
Sbjct: 289 -SGFTDEERDDFTRVIKTMDFVDSYR--HENPTRQSYSFWSYRSAARARNMGWRLDYFLY 345
Query: 309 SEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 346
L + ++ + GSDHCPV L L A
Sbjct: 346 QRALTPYVRKAFIRNFVL------GSDHCPVGLLLDPA 377
>gi|257420126|ref|ZP_05597120.1| exonuclease III [Enterococcus faecalis T11]
gi|257161954|gb|EEU91914.1| exonuclease III [Enterococcus faecalis T11]
Length = 251
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 138/306 (45%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFSELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGVEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|374315128|ref|YP_005061556.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350772|gb|AEV28546.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 271
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 143/312 (45%), Gaps = 72/312 (23%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
P+K ++WN N L K F +++ D D+ LQE ++
Sbjct: 22 PVKLISWNVNGLRACQKKG---FEEYLSRADADIFCLQETKL------------------ 60
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK--- 156
+E I + LS Y +WS A+ K Y+GTAL K QP VS +
Sbjct: 61 -----QEDQIALDKLS------YHTFWSFAEKKGYSGTALFSK--IQPISVSREIGHPLD 107
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
++GR + AEFE ++++ Y PN+ +E+ + R WD +++V K P++ CGD
Sbjct: 108 SEGRTVTAEFEDYFVICCYTPNS--QEKLARIELRMDWDAAFRKYVSDLDKKKPVLICGD 165
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H ID+ +P K++ G++I ER+ F +L G D++R+
Sbjct: 166 LNVAHNPIDLKNP---------------KQNEQNAGYSIQERQGFSTLLASG-FTDSFRY 209
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVS----EELKDRIIACEMQGHGIELEGF 331
L+ +K D WS + + RIDY++ S + +KD II ++
Sbjct: 210 LYPDK-TDAYSWWSYRFHAREKNIGWRIDYWLASKRFEQHIKDSIIEDQV---------- 258
Query: 332 YGSDHCPVSLEL 343
GSDH PV L L
Sbjct: 259 LGSDHAPVVLVL 270
>gi|227544091|ref|ZP_03974140.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|338202504|ref|YP_004648649.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
gi|227185924|gb|EEI65995.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|336447744|gb|AEI56359.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 140/323 (43%), Gaps = 71/323 (21%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLKKIAAMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPKVTY 99
Query: 152 FSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 203
+ +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 100 PKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYLH 154
Query: 204 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 155 ELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFSK 199
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 200 LLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAG 256
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
M G DH P+ LE+
Sbjct: 257 MIDSGER------RDHTPIILEI 273
>gi|194467701|ref|ZP_03073688.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194454737|gb|EDX43634.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 140/323 (43%), Gaps = 71/323 (21%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLQKIAAMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPKITY 99
Query: 152 FSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 203
+ +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 100 PKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYLH 154
Query: 204 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 155 ELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFSK 199
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 200 LLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAG 256
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
M G DH P+ LE+
Sbjct: 257 MIDSGER------RDHTPIILEI 273
>gi|148544314|ref|YP_001271684.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153692|ref|YP_001842033.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227365036|ref|ZP_03849073.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325681652|ref|ZP_08161172.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
gi|148531348|gb|ABQ83347.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225036|dbj|BAG25553.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227069924|gb|EEI08310.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324978964|gb|EGC15911.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 140/323 (43%), Gaps = 71/323 (21%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLKKIAVMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPKVTY 99
Query: 152 FSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 203
+ +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 100 PKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYLH 154
Query: 204 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 155 ELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFSK 199
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 200 LLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAG 256
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
M G DH P+ LE+
Sbjct: 257 MIDSGER------RDHTPIILEI 273
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 33/230 (14%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----KTDGRVILAEFETFYLLNT 174
FK Y +W+ A K Y+G KK +P VS+ ++ +GRV+ EFE+FYL+N
Sbjct: 33 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNV 90
Query: 175 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 233
Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 91 YTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP----- 143
Query: 234 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 293
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 144 ----------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQ 191
Query: 294 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 192 ARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 65/308 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N + V F ++ D D+ +QE ++ A G D
Sbjct: 3 KLISWNVNGIRACVTKG---FLDYFKEVDADIFCIQESKLQA-GQIDLE----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
+ Y +W+ A+ K Y+GTA+ K+ +P V + +
Sbjct: 48 -----------------LEGYHQYWNYAEKKGYSGTAIFTKE--EPISVFYGIGIEEHDK 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI EF +Y++ Y PN+ +++ R W+ + ++ KP+I CGDL
Sbjct: 89 EGRVITLEFGDYYMVTVYTPNS--QQKLARLDYRMTWEDCFRSYLNNLDKQKPIIVCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GF+ ER +F L G ID YR+
Sbjct: 147 NVAHNEIDLKNP---------------KSNRKNAGFSDEERAKFTEFLGNG-YIDTYRYF 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +++ + WS + RIDYF VSE L+D++++ ++ H + GSDH
Sbjct: 191 YPDREGAYTW-WSYMFNARANNAGWRIDYFCVSERLQDKLVSADIHDHIL------GSDH 243
Query: 337 CPVSLELS 344
CPV L ++
Sbjct: 244 CPVELVIN 251
>gi|423335525|ref|ZP_17313300.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
gi|337728755|emb|CCC03874.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 140/323 (43%), Gaps = 71/323 (21%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLRKIAAMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPKVTY 99
Query: 152 FSLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 203
+ +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 100 PKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYLR 154
Query: 204 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 155 ELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFSK 199
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 200 LLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAG 256
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
M G DH P+ LE+
Sbjct: 257 MIDSGER------RDHTPIILEI 273
>gi|256763359|ref|ZP_05503939.1| exonuclease III [Enterococcus faecalis T3]
gi|256684610|gb|EEU24305.1| exonuclease III [Enterococcus faecalis T3]
Length = 257
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 137/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 7 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 51 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIESHDQE 94
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 95 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 152
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 153 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 196
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 197 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 249
Query: 338 PVSLEL 343
PV + L
Sbjct: 250 PVEVVL 255
>gi|397904085|ref|ZP_10505014.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
gi|343178831|emb|CCC57913.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
Length = 252
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 138/314 (43%), Gaps = 74/314 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ TWN N L +K F +FI DPD++ LQE ++ D KN
Sbjct: 1 MRIYTWNVNGLRSILKKG---FLDFIKDEDPDILCLQETKLQEEQIDDEIKN-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE----K 156
K Y ++S A+ K Y+G A+ K +PK + + +
Sbjct: 50 ------------------LKGYYKYFSFANKKGYSGVAIFTK--VEPKNIYYGIGIEEFD 89
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-----RKWDKRIQEFVLQCSGKPLI 211
T+GR+++AE+E F L N Y PN +E ++ R + K + E GK LI
Sbjct: 90 TEGRILIAEYEDFILFNIYFPNGKMSDERLDYKLRFYDAIMDYSKNLLE-----EGKNLI 144
Query: 212 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 271
CGD N +H EID+ +P K++ GF ER+ L+ G ID
Sbjct: 145 ICGDYNTAHREIDLKNP---------------KQNEKSSGFLPIEREYIDRFLEIG-FID 188
Query: 272 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELE 329
AYR + +K ++W + + K R K + RIDYF VS +I E+ H
Sbjct: 189 AYRHFYPDK---IEYTW-WSYMFKAREKNVGWRIDYFFVSNNFISKIKDVEILTH----- 239
Query: 330 GFYGSDHCPVSLEL 343
+GSDHCPV L +
Sbjct: 240 -IHGSDHCPVKLTI 252
>gi|422694022|ref|ZP_16752027.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
gi|315148697|gb|EFT92713.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
Length = 251
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 137/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIESHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|227486633|ref|ZP_03916949.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
gi|227235345|gb|EEI85360.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 141/321 (43%), Gaps = 65/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAG-SKDAPKNH 94
+KF++WN +SL + ++ + + + DVIA+QE ++P G SK
Sbjct: 1 MKFISWNIDSLNAALTSDSARAIMSRLVLDTVIKENADVIAIQETKLPYTGLSKKHIAKL 60
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQ-----PKK 149
E D + R+ P A YAGT L KK + P+
Sbjct: 61 AEYFPDYD-------YVYRSSEDP-----------ARKSYAGTMTLYKKGLKVEPTYPQI 102
Query: 150 VSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC- 205
+ +GR+I EF+ FY + Y PN G N R R+ WDK +++
Sbjct: 103 GAPCTMDFEGRIITLEFDNFYFTHVYTPNAG-----NGLTRLADRQVWDKLYADYLKSLD 157
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP+I GD NV+HEEID++HPE N E PGFT ER+ F +L
Sbjct: 158 QNKPVIAAGDFNVAHEEIDLAHPE------------NNHE---SPGFTDEEREGFTNLLA 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
+G D +R +H ++ ++W + K RIDYF+VSE +KD I +M
Sbjct: 203 KG-FTDTFRHIHGR--VEGKYTWWAQRVKTSKINNSGWRIDYFLVSERIKDLITNSDMID 259
Query: 324 HGIELEGFYGSDHCPVSLELS 344
G DH P+ LE++
Sbjct: 260 SGER------QDHTPIVLEIN 274
>gi|229544881|ref|ZP_04433606.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256963841|ref|ZP_05568012.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|257081702|ref|ZP_05576063.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|257087702|ref|ZP_05582063.1| exonuclease III [Enterococcus faecalis D6]
gi|257416904|ref|ZP_05593898.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257421653|ref|ZP_05598643.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|307271787|ref|ZP_07553058.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|307278718|ref|ZP_07559785.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|307288645|ref|ZP_07568626.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|384514063|ref|YP_005709156.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|422703204|ref|ZP_16761029.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|422707239|ref|ZP_16764936.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|422720136|ref|ZP_16776759.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|422724491|ref|ZP_16780967.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|422734487|ref|ZP_16790776.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|422741447|ref|ZP_16795472.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|424672083|ref|ZP_18109064.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
gi|229309982|gb|EEN75969.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256954337|gb|EEU70969.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|256989732|gb|EEU77034.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|256995732|gb|EEU83034.1| exonuclease III [Enterococcus faecalis D6]
gi|257158732|gb|EEU88692.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257163477|gb|EEU93437.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|295113675|emb|CBL32312.1| exodeoxyribonuclease III [Enterococcus sp. 7L76]
gi|306500399|gb|EFM69735.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|306504579|gb|EFM73782.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|306511665|gb|EFM80664.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|315025498|gb|EFT37430.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|315032586|gb|EFT44518.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|315143871|gb|EFT87887.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|315155597|gb|EFT99613.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|315165304|gb|EFU09321.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|315168718|gb|EFU12735.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|327535952|gb|AEA94786.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|402357128|gb|EJU91842.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
Length = 251
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 137/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 145/315 (46%), Gaps = 63/315 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D++ +QE ++
Sbjct: 1 MKLISWNVNGLRSCVGKG---FLDYFRRADADIVCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+E +L L P + Y+ +W+ A+ K Y+GTA+ + F+P V L D
Sbjct: 39 ---QEGQL----ELELP--EGYRQYWNCAEKKGYSGTAVFTR--FEPLSVRKGLSDGDDP 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GRV+ EF F+L+N Y PN + + + + R W++R + ++ + KP++ CGDL
Sbjct: 88 EGRVLTLEFPAFFLVNVYTPNA--RRDLSRLEYRIAWEERFRAYLKELDARKPVVVCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ + +F + G GFT ER+ +L+ G D +R
Sbjct: 146 NVAHREIDLKNAKF---------------NRGNAGFTDEEREAMTRLLEAG-FTDTFRHF 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ D WS P + R RIDYF+VS L A ++ I+ G GSDH
Sbjct: 190 YPDR-TDAYTWWSFMPKVRERNIGWRIDYFLVSARL-----APYLEDALID-SGIMGSDH 242
Query: 337 CPVSLELSEASSDSE 351
CPV L + + E
Sbjct: 243 CPVGLLMRDPGEQPE 257
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 131/287 (45%), Gaps = 62/287 (21%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M ++E+ ++ FK
Sbjct: 12 FMDFFNSVDADVFCIQESKM----------------------QQEQ-------NTFEFKG 42
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAP 177
Y +W+ A K Y+G KK +P VS+ + +GRVI EFE+FYL+N Y P
Sbjct: 43 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTP 100
Query: 178 NNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 236
N+ ++ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 101 NS--QQALFRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP-------- 150
Query: 237 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 296
K + GF+ ER++F +L G ID +R+ + K+ + WS +
Sbjct: 151 -------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQARD 201
Query: 297 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 202 KDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 242
>gi|332522573|ref|ZP_08398825.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
gi|332313837|gb|EGJ26822.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + + D D+IA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATGP-------- 52
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
TK E L F NY +W S A YAGT L K+ P V+
Sbjct: 53 -----TKKHLESILNY--------FPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F + ++GR+I EF+ F++ Y PN G + R++WD + E++ Q
Sbjct: 99 FPEIGAPTTMDSEGRIITLEFDDFFVTQVYTPNAG--DGLRRLADRQEWDIKYAEYLAQL 156
Query: 206 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID+++P N+ PGFT ER F A+L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPA------------SNRR---SPGFTDEERAGFTALL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R LH D+ ++W + K RIDY++ S + D+++ EM
Sbjct: 202 EKG-FTDTFRHLH--GDIPNVYTWWAQRSKTSKMNNTGWRIDYWLTSNRVADKVLKSEML 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPILLEI 273
>gi|255974862|ref|ZP_05425448.1| exonuclease III [Enterococcus faecalis T2]
gi|255967734|gb|EET98356.1| exonuclease III [Enterococcus faecalis T2]
Length = 257
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 137/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 7 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 51 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 94
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 95 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 152
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 153 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 196
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 197 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 249
Query: 338 PVSLEL 343
PV + L
Sbjct: 250 PVEVVL 255
>gi|222152632|ref|YP_002561807.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
gi|222113443|emb|CAR41130.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 138/319 (43%), Gaps = 63/319 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + T DPD++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVTEDPDILAIQETKLSATGPT---KKHM 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E+ LS P + +W S A YAGT L + P
Sbjct: 58 EI----------------LLSYFP-NHLHVWRSSVEPARKGYAGTLFLYRNTLNPVVTFP 100
Query: 153 SLEKTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 206
+ D GR+I EF+ FY+ Y PN G ++ R++WD + E++
Sbjct: 101 EIGAPDPMDAEGRIITLEFDDFYVTQVYTPNAG--DQLRRLPERQEWDIKYAEYLASLDR 158
Query: 207 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
KP++ GD NV+H EID+++P N+ GFT ER F A+L +
Sbjct: 159 NKPVLATGDYNVAHHEIDLANPA------------SNRR---SAGFTDEERAGFTALLAK 203
Query: 267 GRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
G D +R+LH D+ ++W + K RIDY++ S + D++I EM
Sbjct: 204 G-FTDTFRYLH--GDIPNVYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSEMIHS 260
Query: 325 GIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 261 GER------QDHTPILLEI 273
>gi|420236813|ref|ZP_14741290.1| exodeoxyribonuclease [Parascardovia denticolens IPLA 20019]
gi|391879916|gb|EIT88416.1| exodeoxyribonuclease [Parascardovia denticolens IPLA 20019]
Length = 277
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 140/322 (43%), Gaps = 67/322 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF-------ITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+KFVTWN +SL + + E S I P V A+QE ++PAAG P
Sbjct: 1 MKFVTWNIDSLNAALTGD-SERSRLSRQVLHDIAACSPQVFAIQETKLPAAG----PSKK 55
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVK-------K 143
Q KAS E F Y+I W A YAGT L +
Sbjct: 56 Q------KASLESI-----------FPGYRIAWRSSQEPARKGYAGTMCLYRPEGGQEVS 98
Query: 144 CFQPKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
P+ + ++GR++ EF FYL + Y PN+G + + R+ WD R + ++
Sbjct: 99 PLYPQIGAPEPMDSEGRILTLEFPGFYLTDVYTPNSG--DGLRRLEERQVWDDRYRSYLQ 156
Query: 204 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
KP+I CGD NV+HEEID++HP N+ GFT ER +FG
Sbjct: 157 DLDQVKPVIACGDFNVAHEEIDLAHPA------------SNRR---SAGFTDEERDKFGQ 201
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI-GKYRGKRMRIDYFIVSEELKDRIIACEM 321
+L G D +R LH + + W+ + K RIDY++VS+ L D++ +
Sbjct: 202 LLDAG-FADTFRRLHPNQAGVYTW-WAQRAVTSKANNSGWRIDYWLVSDRLMDKVRGVSV 259
Query: 322 QGHGIELEGFYGSDHCPVSLEL 343
G DH P+ +E+
Sbjct: 260 MDTGER------RDHAPLVMEI 275
>gi|348524661|ref|XP_003449841.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Oreochromis niloticus]
Length = 310
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 60/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN + L VK + +++ DPD++ LQE +
Sbjct: 55 MKITSWNVDGLRAWVKK---KGLDWVREEDPDILCLQETKC------------------- 92
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK---- 156
EK + S P + ++ W + D + Y+G A+L K +P KV++ + K
Sbjct: 93 ----AEKALPAEITSMPEYP-HKYWAASGDKEGYSGVAMLCKT--EPIKVTYGIGKEEHD 145
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI AEF +FYL+ Y PN R+ WD + ++ + KPL+ CGD
Sbjct: 146 KEGRVITAEFPSFYLVTAYVPNAS--RGLVRLDYRKTWDVDFRAYLSELDMQKPLVLCGD 203
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P+ NK++ GFT ER+ F +L G +D++R
Sbjct: 204 LNVAHQEIDLKNPK------------GNKKN---AGFTPEEREGFSQLLAAG-FVDSFRE 247
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ E+ F W+ + + R+DYF++S L + +++ + GSD
Sbjct: 248 LYPEQTNAYTF-WTYMMNARSKNVGWRLDYFVLSSSLLPGLCDSKIRNKAM------GSD 300
Query: 336 HCPVSLELS 344
HCP++L ++
Sbjct: 301 HCPITLHIA 309
>gi|145355749|ref|XP_001422113.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582353|gb|ABP00430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 273
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 137/314 (43%), Gaps = 53/314 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L V+WN N L +K D DV+ LQE ++ A G + K
Sbjct: 1 LSVVSWNVNGLRSLLKKAPRALDELARRTDADVLVLQETKLGADGRGAVDGEGEAPK--- 57
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVK-------KCFQPKKVSFSL 154
+R + + S A Y+GTA+ ++ K + ++S
Sbjct: 58 ---------FLREYGTREYAT-----STARKGYSGTAMFIRDGDWAKMKRVEATRLSAGG 103
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 212
+GRV+ AE ++ +++N Y PN+G + + +R W++ I+E V L+ GK +I+
Sbjct: 104 FDDEGRVLTAELDSCFVVNAYVPNSG-ADLKRLPERVEVWERAIREHVRALESRGKAVIY 162
Query: 213 CGDLNVSHEEIDV--SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 270
CGDLNV+HEEID+ H E +A GFT ER +L+E L+
Sbjct: 163 CGDLNVAHEEIDLWGRHAENSKSA----------------GFTPEERAAMTRLLEECDLV 206
Query: 271 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 330
D +R H+ D WS + + + R+DY + S L D I+ L
Sbjct: 207 DTFR-AHR-PDARAFTYWSYRAGAREKNRGWRLDYILASRRLADSIV------DAYALPD 258
Query: 331 FYGSDHCPVSLELS 344
GSDHCPV L ++
Sbjct: 259 VLGSDHCPVGLRVA 272
>gi|343524816|ref|ZP_08761774.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343398465|gb|EGV10998.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 139/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAEKADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F S +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTAL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFANLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|256854033|ref|ZP_05559398.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|307290261|ref|ZP_07570177.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|422684833|ref|ZP_16743058.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
gi|256710976|gb|EEU26019.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|306498682|gb|EFM68183.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|315030444|gb|EFT42376.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
Length = 251
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 136/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIETHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|256961018|ref|ZP_05565189.1| exonuclease III [Enterococcus faecalis Merz96]
gi|293384592|ref|ZP_06630458.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|293386821|ref|ZP_06631392.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|312906418|ref|ZP_07765426.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312979423|ref|ZP_07791111.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|422701088|ref|ZP_16758929.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
gi|256951514|gb|EEU68146.1| exonuclease III [Enterococcus faecalis Merz96]
gi|291078138|gb|EFE15502.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|291083824|gb|EFE20787.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|310627572|gb|EFQ10855.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|311287794|gb|EFQ66350.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|315170467|gb|EFU14484.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
Length = 251
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 137/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGVEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|229549148|ref|ZP_04437873.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256957962|ref|ZP_05562133.1| exonuclease III [Enterococcus faecalis DS5]
gi|257084299|ref|ZP_05578660.1| exonuclease III [Enterococcus faecalis Fly1]
gi|257090921|ref|ZP_05585282.1| exonuclease III [Enterococcus faecalis CH188]
gi|307276972|ref|ZP_07558082.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|312902560|ref|ZP_07761766.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|312951910|ref|ZP_07770798.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|384519525|ref|YP_005706830.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|421513270|ref|ZP_15960049.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
gi|422687253|ref|ZP_16745435.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|422690983|ref|ZP_16749024.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|422710887|ref|ZP_16767822.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|422725430|ref|ZP_16781891.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|229305702|gb|EEN71698.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256948458|gb|EEU65090.1| exonuclease III [Enterococcus faecalis DS5]
gi|256992329|gb|EEU79631.1| exonuclease III [Enterococcus faecalis Fly1]
gi|256999733|gb|EEU86253.1| exonuclease III [Enterococcus faecalis CH188]
gi|306506395|gb|EFM75555.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|310630099|gb|EFQ13382.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|310634230|gb|EFQ17513.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|315035107|gb|EFT47039.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|315154300|gb|EFT98316.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|315159607|gb|EFU03624.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|315579630|gb|EFU91821.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|323481658|gb|ADX81097.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|401673644|gb|EJS80023.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
Length = 251
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 136/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|255971866|ref|ZP_05422452.1| exonuclease III [Enterococcus faecalis T1]
gi|255962884|gb|EET95360.1| exonuclease III [Enterococcus faecalis T1]
Length = 257
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 136/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 7 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 51 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 94
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 95 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 152
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 153 VAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 196
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 197 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 249
Query: 338 PVSLEL 343
PV + L
Sbjct: 250 PVEVVL 255
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 30/228 (13%)
Query: 121 KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTD--GRVILAEFETFYLLNTYA 176
K+Y ++ + SK Y+G A+ K K ++K D GR + AEFE FYL++ Y
Sbjct: 141 KHYFLYLNFCKSKAGYSGVAIASKVKPLSVKCDIGVDKHDQEGRTLTAEFEQFYLVSCYV 200
Query: 177 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 235
PN+G K E + R ++WD Q ++ KP I CGDLNV+H EID+S+P
Sbjct: 201 PNSGQKLERLDY-RTKEWDIDFQNYLEGLRKKKPTILCGDLNVAHHEIDLSNP------- 252
Query: 236 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 295
NK+ GFT+ ER +F L++G +D++R LH ++ FS N +
Sbjct: 253 -----AGNKK---TAGFTLQERDQFSNYLQKG-WVDSFRHLHPKEVKYSFFSARSNSRSQ 303
Query: 296 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+G R+DYFI+++E D I ++ + +E GSDH P+ E+
Sbjct: 304 NKG--WRLDYFIINKEASDAITVSDIN---LTVE---GSDHVPIECEV 343
>gi|406672108|ref|ZP_11079342.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
gi|405579418|gb|EKB53524.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 140/323 (43%), Gaps = 69/323 (21%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N S + PDVIA+QE ++ G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALMSRAVLRDLVELKPDVIAIQETKLSTKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQ----- 146
E+ + F YQ+ W A YAG L KK
Sbjct: 58 EILKEQ------------------FPEYQLAWRSSCEPARKGYAGVMFLYKKSIDAQVTY 99
Query: 147 PKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 205
P+ +L +GR++ E E +L N Y PN G E R+ WD++ +++++
Sbjct: 100 PEIGGPALMDCEGRILTLELEDLFLTNVYTPNAG--SELKRLADRQIWDQKYADYLVELD 157
Query: 206 SGKPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 263
KP+I GD NV+HEEID+++P F+A GFT ER+ F +
Sbjct: 158 QQKPVIAMGDFNVAHEEIDLANPASNHFSA-----------------GFTDEERQGFSRL 200
Query: 264 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEM 321
L+ G D++R LH ++ ++W + K RIDYF+VS L+D+I M
Sbjct: 201 LERG-FTDSFRHLHGP--VEGQYTWWAQRVKTSKINNSGWRIDYFVVSNRLRDQIKNSAM 257
Query: 322 QGHGIELEGFYGSDHCPVSLELS 344
G DH P+ LE++
Sbjct: 258 IDSGAR------QDHTPILLEMT 274
>gi|449980965|ref|ZP_21817505.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
gi|450134133|ref|ZP_21870968.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449149929|gb|EMB53710.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449176153|gb|EMB78512.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 142/321 (44%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + +T D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLTEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|381395703|ref|ZP_09921398.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328582|dbj|GAB56531.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 255
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 60/308 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK +F + D DV+ LQE T
Sbjct: 1 MKLVSWNVNGIRAAVKK---DFLQSLAAMDCDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL--VKKCFQPKKVSFSLEKTD 158
KA E+ ++ AL Y I+ + A K Y+GT+++ V+ K + S +
Sbjct: 37 KAQDEQ---VIEALCD--LHGYHIFTNSAVKKGYSGTSVITRVEPIDVTKDIGISEHDQE 91
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRV+ AEF FYL+ Y PN+G E R +WD ++ KP++ CGDLN
Sbjct: 92 GRVLCAEFSDFYLVTVYTPNSG--SELKRLGYRGQWDADFLTYIKALEAKKPVVICGDLN 149
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
+H+++D++ P+ PN G+T E ++ G ID++R +H
Sbjct: 150 AAHKDLDLARPK------------PNYNK--SAGYTQQEIDGIDNLIAAG-FIDSFRHVH 194
Query: 278 KEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +SW G + R RIDYF+VS L I E+ + +GSDH
Sbjct: 195 PDT---VKYSWWSYRAGARERNVGWRIDYFLVSSALAANISDAEI------YDDIHGSDH 245
Query: 337 CPVSLELS 344
CPVS++L+
Sbjct: 246 CPVSVKLA 253
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 135/307 (43%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTD- 158
+L P ++ Y W S Y+GTA+ + +P V+ +E+ D
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGIGIEEHDQ 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CGDL
Sbjct: 88 EGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRNYLLELDKKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GF+ ER + +L G D +R L
Sbjct: 146 NVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDTFRHL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ + + WS + R RIDYFI S+ L D+I ++ + +GSDH
Sbjct: 190 YPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGSDH 242
Query: 337 CPVSLEL 343
CPV L +
Sbjct: 243 CPVELVI 249
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 135/307 (43%), Gaps = 63/307 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTD- 158
+L P ++ Y W S Y+GTA+ + +P V+ +E+ D
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGIGIEEHDQ 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CGDL
Sbjct: 88 EGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMNWEDAFRNYLLELDKKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GF+ ER + +L G D +R L
Sbjct: 146 NVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDTFRHL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ + + WS + R RIDYFI S+ L D+I ++ + +GSDH
Sbjct: 190 YPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGSDH 242
Query: 337 CPVSLEL 343
CPV L +
Sbjct: 243 CPVELVI 249
>gi|319954545|ref|YP_004165812.1| exodeoxyribonuclease iii xth [Cellulophaga algicola DSM 14237]
gi|319423205|gb|ADV50314.1| exodeoxyribonuclease III Xth [Cellulophaga algicola DSM 14237]
Length = 254
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 143/309 (46%), Gaps = 62/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ V+WN N + VK +F + T PD++ LQE T
Sbjct: 1 MHIVSWNVNGIRAAVK---KDFFEAVKTMAPDILCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKC--FQPKKVSFSLEKTD 158
KA E + +AL S N+ + + AD K Y+GTA+L K+ + + T+
Sbjct: 37 KAQDSE---VAKALES--LSNFSLNSNSADKKGYSGTAILSKQAPISATPNMGIEVHDTE 91
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLN 217
GR++ E+++FYL+N Y PN+G K + + R++WDK ++ KP+I CGD N
Sbjct: 92 GRILCTEYDSFYLVNVYVPNSGQKLDR--LEYRQQWDKDFLAYLKNLEKKKPVIACGDFN 149
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDAYRFL 276
V+H+ ID+ + +K ++ + G+T E + +D++R L
Sbjct: 150 VAHQAIDLKN---------------DKANYNKTAGYTQIEIDGMDNFIAND-FVDSFRAL 193
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H + + ++ WS + R RIDYF+VS+ + D+I + GSD
Sbjct: 194 HPD---EVAYTFWSYRFKSRERNTGWRIDYFLVSKAIADKIKKVTIYA------DIMGSD 244
Query: 336 HCPVSLELS 344
HCP+ + LS
Sbjct: 245 HCPIGITLS 253
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 137/305 (44%), Gaps = 63/305 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS--FSLEKTD- 158
+L P ++ Y W S Y+GTA+ + +P V+ +E+ D
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGIGIEEHDQ 87
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CGDL
Sbjct: 88 EGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRNYLLELDKKKPVILCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P+ N+++ GF+ ER + +L G D +R L
Sbjct: 146 NVAHQEIDLKNPKM------------NRKN---AGFSDEERAKMTELLGAG-FTDTFRHL 189
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ + + WS + R RIDYFI S+ L D+I ++ + +GSDH
Sbjct: 190 YPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGSDH 242
Query: 337 CPVSL 341
CPV L
Sbjct: 243 CPVEL 247
>gi|55821526|ref|YP_139968.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
gi|55737511|gb|AAV61153.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
Length = 275
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + + + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGDSARAQLSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +Y I W A YAGT L KK P ++
Sbjct: 58 QILEDY------------------FPDYVITWRSSVEPARKGYAGTMFLYKKELTPV-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ S +GR+I EF+TF++ Y PN G + R+ WDK+ +++ +
Sbjct: 99 YPEIGAPSTMDCEGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDKKYADYLAEL 156
Query: 206 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+G ID YR H D+ ++W + K RIDY++ S + D++I M
Sbjct: 202 NKG-FIDTYR--HLNGDVTGAYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSNMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGDR------QDHTPIVLEI 273
>gi|417937397|ref|ZP_12580697.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
gi|343391661|gb|EGV04234.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
Length = 275
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 59/317 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF--- 152
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EVLEELFPGYEHT---WRSSQEPARKGY-----------AGTMFLYKKELTPT-ISFPEI 102
Query: 153 ---SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 208
S ++GR+I EF+TF++ Y PN G + + R+ WD + E++ Q K
Sbjct: 103 GAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQLDKQK 160
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P++ GD NV+H+EID+++P N+ PGFT ER+ F +L +G
Sbjct: 161 PVLSTGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLLAKG- 204
Query: 269 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 326
D +R +H DM ++W + K RIDY++ S + D++ +M G
Sbjct: 205 FTDTFRHIH--GDMPERYTWWAQRSKTSKINNTGWRIDYWLTSNRVADKVTKSDMIDSGA 262
Query: 327 ELEGFYGSDHCPVSLEL 343
DH P+ LE+
Sbjct: 263 R------QDHTPIVLEI 273
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 138/308 (44%), Gaps = 65/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
++ V+WN N + ++ F +F D DV +QE +M P + P +Q +
Sbjct: 1 MRLVSWNVNGIRACMQKG---FMDFFKEIDADVFCIQETKMQPGQLEIETPGYYQYMNSA 57
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EK 156
K Y+GT + K+ +P V++ L
Sbjct: 58 EKKG-----------------------------YSGTMVFSKQ--KPLSVTYGLGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
+GRVI E+E FYL+ Y PN+ K+ R W+ + ++ + + K ++ CGD
Sbjct: 87 HEGRVITCEYEDFYLVCVYTPNS--KDGLLRLDYRMVWEDAFRAYLHKLNETKSVLVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GFT ER + +L+ G ID++R+
Sbjct: 145 LNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSVLLESG-FIDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ +++ + WS + + RIDYF+VSE+ K+ I + YGSD
Sbjct: 189 LYPKQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKEAIREARIH------TDIYGSD 241
Query: 336 HCPVSLEL 343
HCPVSLE
Sbjct: 242 HCPVSLEF 249
>gi|256616763|ref|ZP_05473609.1| exonuclease III [Enterococcus faecalis ATCC 4200]
gi|256596290|gb|EEU15466.1| exonuclease III [Enterococcus faecalis ATCC 4200]
Length = 251
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 137/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNINGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|428184721|gb|EKX53575.1| apurinic/apyrimidinic endonuclease family member in base excision
repair [Guillardia theta CCMP2712]
Length = 447
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 153/356 (42%), Gaps = 95/356 (26%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN ++ +K N + PD+I QE ++ + H E ++
Sbjct: 132 KIVSWNVTTIRSLMKKNPELLKKLMEQEQPDLICFQETKLKQ-------EEHDEYEE--- 181
Query: 103 ASREEKLILMRALSSPPFKNYQIWWS--LADSKYAGTALLVKK----------------- 143
M P + Y+ +S L++ YAGT +LV+
Sbjct: 182 ---------MLKSQFPGDQGYEAHFSSSLSNKSYAGTLVLVRSSKDKATAQKQTKMDSFF 232
Query: 144 --------------CFQPKKVSF---SLEKTDG----------RVILAEFETFYLLNTYA 176
P KV+F +L K DG R I EFE+F+++ TY
Sbjct: 233 KGKDSKSAKKDEETACPPLKVTFGLSTLSKDDGEIAAEVIQEGRTITVEFESFFVVATYV 292
Query: 177 PNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 234
PN+G K + F R + WD+++ E++ L+ SGKP+IWCGDLNV+H + D+ +
Sbjct: 293 PNSGEKLQRLEF-RTKLWDRKVVEYLKKLEASGKPVIWCGDLNVAHLDNDIWNVGAKHLV 351
Query: 235 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 293
K G P ER F IL+EG +D +R LH E D FS WS
Sbjct: 352 KSAGTTPE-------------ERDSFSKILEEG-YVDCFRHLHGE-DAKGWFSYWSVRAG 396
Query: 294 GKYRGKRMRIDYFIVSEEL--KD---RIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+ + +R+DYF+ S+ L +D R++ ++ + F DH +SL L+
Sbjct: 397 NRPWNRGLRLDYFVASKSLCSQDSLPRVVDADIH------DEFVAIDHAAISLTLA 446
>gi|290986733|ref|XP_002676078.1| predicted protein [Naegleria gruberi]
gi|284089678|gb|EFC43334.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 149/325 (45%), Gaps = 66/325 (20%)
Query: 29 TETSSEENSKKDPLKFVTWNAN--SLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG 86
T S E N + KF++WN N S + R + N+ + + +P + LQE +
Sbjct: 65 TNNSYELNKQ---FKFISWNVNGISAVFRKEPNYLKM--LVEKEEPTCLCLQETK----- 114
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY--QIWWSLADSKYAGTALLVKKC 144
L +D K S ++ FKNY S A Y+GTA V K
Sbjct: 115 ----------LSEDVKLSE---------MAQYKFKNYIGHFNTSRARKGYSGTACFVLK- 154
Query: 145 FQPK--KVSFSLEK----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 198
PK V F + K +GR I E+E FYL+NTY PN+G + + R ++WD +
Sbjct: 155 HGPKVLNVKFGIGKDKHDLEGRTITVEYEDFYLVNTYCPNSGQNLDRLEY-RTKEWDVDL 213
Query: 199 QEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 257
++ + KP+IW GDLNV+ E+D+ P + + PGFT+ ER
Sbjct: 214 LKYFEKLEKKKPIIWGGDLNVAISEMDIHDPLTLSKS---------------PGFTLEER 258
Query: 258 KRFGAILKEG-RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 316
+ + K ID++R+ + K + + + + + K RIDYF+ S LKD+I
Sbjct: 259 QSSPLVTKASPPFIDSFRYKNPYKKQYTYYGYINDM--RLQKKGWRIDYFVCSNSLKDKI 316
Query: 317 IACEMQGHGIELEGFYGSDHCPVSL 341
+ + LE ++GSDH P+ L
Sbjct: 317 VNSYI------LEEYFGSDHLPIGL 335
>gi|400289764|ref|ZP_10791791.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
gi|399920555|gb|EJN93372.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
Length = 275
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 140/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFD------PDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ D PD+IA+QE ++PA G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVIDTLAEKKPDIIAIQETKLPAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F +Y I W A YAGT + K +P V+
Sbjct: 58 EILKNY------------------FADYDIAWRSSVEPARKSYAGTIFIYKSELKPT-VT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+I EF+ F++ Y PN G + + R+ WD++ ++
Sbjct: 99 YPNIGAPATMDAEGRIITLEFDHFFVTQVYTPNAG--DGLRRLEERQIWDEKYAAYLADL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLAAGDYNVAHQEIDLAHPA------------SNRR---SPGFTDEERAGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+G D +R++H D+ +SW + K RIDY++ S + D+++ EM
Sbjct: 202 AKG-FTDTFRYIH--GDIPDVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVLKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPILLEI 273
>gi|420145437|ref|ZP_14652903.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402932|gb|EJN56217.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 254
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 66/306 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK N F F D D +QE ++ A +
Sbjct: 1 MKFISWNVNGLRAVVKKN---FMEFFEQQDADFFCIQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L+ P + Y W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 45 -------------LTLPGYYQY---WNYAERKGYSGTAIFTKH--EPLNVTYGMGVAEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GR+I E++ FYLL Y PN+ K + + R W+ + ++ + K P+I+CGD
Sbjct: 87 QEGRLITLEYKDFYLLTCYTPNSQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+HE ID+ + +K + GF+ ER +F +L G D++R+
Sbjct: 145 LNVAHEPIDLKN---------------DKTNHHNAGFSDEERAKFSQLLAAG-FTDSFRY 188
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ ++ +S+ N + RIDYF+ +++L+ ++ + L GSD
Sbjct: 189 FYPDQVTYSWWSYRFN--ARQNNAGWRIDYFVTADQLQPQLADAAI------LTDVLGSD 240
Query: 336 HCPVSL 341
HCPV L
Sbjct: 241 HCPVML 246
>gi|300860584|ref|ZP_07106671.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428767881|ref|YP_007153992.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|300849623|gb|EFK77373.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186054|emb|CCO73278.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 251
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 136/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FLDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|433449048|ref|ZP_20411913.1| exodeoxyribonuclease III [Weissella ceti NC36]
gi|429539437|gb|ELA07474.1| exodeoxyribonuclease III [Weissella ceti NC36]
Length = 275
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 144/321 (44%), Gaps = 66/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE----FSNF--ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +SL +++ P +S I PDV+A+QE + P G
Sbjct: 1 MQFISWNIDSLNAAIQHKSPRGEMTWSTLVEIAAMAPDVLAIQETKSPITG--------- 51
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF- 152
+EK+I F Y I+ + + + Y+GT +L K +P ++
Sbjct: 52 ------MTGPQEKVI------KELFPEYHIYQNTSTERKGYSGTMMLSKT--EPLNITTP 97
Query: 153 SLEK-----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 207
S++ T+GR++ EFE ++ Y PN+G E + R+ WD + Q ++
Sbjct: 98 SIDAPEGMDTEGRILTLEFENAFVSTVYTPNSG--RELARLEDRQGWDAKYQAYIESLDA 155
Query: 208 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
KP+I+ GD+NV+HE ID+ +P K + GFT ER F ++L
Sbjct: 156 IKPVIFSGDMNVAHESIDLKNP---------------KANRRSAGFTDEERAGFTSLLSA 200
Query: 267 GRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
G +D +RF H D +SW + K RIDY++VS+ L D I +
Sbjct: 201 G-FVDTFRFQH--PDTIEAYSWWAQMSKTSKINNTGWRIDYYLVSQRLADNIDETSILNT 257
Query: 325 GIELEGFYGSDHCPVSLELSE 345
G DH PV+L L +
Sbjct: 258 GDR------QDHAPVTLSLKD 272
>gi|227519480|ref|ZP_03949529.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|422727704|ref|ZP_16784135.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|424677217|ref|ZP_18114076.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|424679202|ref|ZP_18116030.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|424682483|ref|ZP_18119253.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|424686042|ref|ZP_18122715.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|424689047|ref|ZP_18125641.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|424692659|ref|ZP_18129142.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|424695850|ref|ZP_18132222.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|424699041|ref|ZP_18135281.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|424702698|ref|ZP_18138845.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|424705840|ref|ZP_18141862.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|424716100|ref|ZP_18145417.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|424719240|ref|ZP_18148416.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|424724426|ref|ZP_18153372.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|424726233|ref|ZP_18154907.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|424734642|ref|ZP_18163137.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|424746779|ref|ZP_18175000.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
gi|227073092|gb|EEI11055.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|315151770|gb|EFT95786.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|402355247|gb|EJU90024.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|402357580|gb|EJU92285.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|402367516|gb|EJV01856.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|402368116|gb|EJV02441.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|402369475|gb|EJV03753.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|402377670|gb|EJV11567.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|402377770|gb|EJV11662.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|402379084|gb|EJV12904.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|402386727|gb|EJV20225.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|402388863|gb|EJV22288.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|402389270|gb|EJV22670.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|402395163|gb|EJV28284.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|402396815|gb|EJV29860.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|402400257|gb|EJV33096.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|402406913|gb|EJV39456.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|402409191|gb|EJV41626.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
Length = 251
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 135/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFIVTCYTPNS--QAELKRLAYRMTWEDAFSAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|290562880|gb|ADD38834.1| DNA-apurinic or apyrimidinic site lyase [Lepeophtheirus salmonis]
Length = 317
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 143/335 (42%), Gaps = 59/335 (17%)
Query: 14 AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPD 73
KK SPS + + T+T ++ K LK +WN + +K S + T PD
Sbjct: 35 VKKETESPSDERPDCTQT--QKGKKSCNLKITSWNVAGVRAWIKKG--SLSYLLETEKPD 90
Query: 74 VIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK 133
+ LQE + P +ELKD +Q W
Sbjct: 91 IFCLQETK---CSETKIPCELKELKD---------------------YPHQFWAFAKKEG 126
Query: 134 YAGTALLVKKCFQPKKVSFSLEKTD----GRVILAEFETFYLLNTYAPNNGWKEEENSFQ 189
Y+G AL K +P V L+ D GR+I+AEFE F+LL TY PN G K +
Sbjct: 127 YSGVALFSK--VKPLDVQVGLQSQDHDEEGRIIIAEFEFFFLLTTYVPNAGRKLV--TLD 182
Query: 190 RRRKWDKRIQ-EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 248
+R WD ++ + KP+I GDLNV+H EID+++P K +
Sbjct: 183 KRLDWDLLLRKKMKELNKKKPVIASGDLNVAHTEIDLANP---------------KTNQK 227
Query: 249 QPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIV 308
GFT ER F +L G +D YR L+ EK F W+ + + R+DYF++
Sbjct: 228 NAGFTPEERAGFDDLLSLG-FVDTYRKLNPEKTGAYTF-WTYMMNARAKNVGWRLDYFLI 285
Query: 309 SEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
S DR + I GSDHCP+SL L
Sbjct: 286 S----DRWFESNVCDSVIR-SKVLGSDHCPISLLL 315
>gi|392567192|gb|EIW60367.1| hypothetical protein TRAVEDRAFT_45617 [Trametes versicolor
FP-101664 SS1]
Length = 362
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 143/319 (44%), Gaps = 72/319 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ WN L K F ++ DPDV+ L E ++ + E D
Sbjct: 97 VRIAAWNICGLAAAQKKG---FKYYVEAEDPDVLVLTETKV-----------NNEPVDPA 142
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL------ 154
ASR F + +W+++D K Y+GTA+L K P V ++L
Sbjct: 143 LASR--------------FAHR--YWAISDKKTYSGTAILSK--VDPLSVDYTLPGHPDP 184
Query: 155 EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 213
+ GR++ EF + Y++ TY N G + +++W+ + ++ + K P+IW
Sbjct: 185 KSVKGRIVTLEFASCYVVGTYVVNAG--TGLKTLDAKKEWNTHFEAYIRELDAKKPVIWT 242
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGR---- 268
GDLNV+ +D+++P K +W + PG+T AE + IL +
Sbjct: 243 GDLNVAPTALDLTNP---------------KPNWNKTPGYTEAETSSYARILNTSKEEVD 287
Query: 269 ---LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
+D +R LH FS+ N + +G R+D F+VS L++R+ CE++
Sbjct: 288 APQFVDVWRKLHPALKHYTYFSYRFN--CREKGIGWRLDMFVVSARLEERVKMCEIRS-- 343
Query: 326 IELEGFYGSDHCPVSLELS 344
E + SDHCPV +EL+
Sbjct: 344 ---EVYGASDHCPVVMELA 359
>gi|320528523|ref|ZP_08029680.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
gi|320131109|gb|EFW23682.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
Length = 251
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 143/313 (45%), Gaps = 73/313 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K F++F D D ALQE +M +DA K
Sbjct: 1 MKFISWNVNGLRAAMKKG---FADFFHEQDADFFALQETKMQPDQLEDAMK--------- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE---KT 157
F+ Y ++ + A+ K Y+GT + K +P V++ +E
Sbjct: 49 ------------------FEGYHMYMNSAERKGYSGTLIYTKH--EPLSVTYEIEGDVTK 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 216
+GRVI E+ FY + Y PN+ K+ R +W++ +++ +++ K P+I+ GDL
Sbjct: 89 EGRVITLEYPDFYFVCAYVPNS--KDGLLRLPYRIEWEEMLRKHLMELDKKKPVIYTGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+HEEID+ +P + PGF+ ER +L G D +R L
Sbjct: 147 NVAHEEIDLKNP---------------ATNHKNPGFSDEERAAMTKLLDSG-FSDTFREL 190
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIELEGF 331
+ + FS WS + R RIDYF+VSE L +D +I E +
Sbjct: 191 YPDTQ---KFSWWSYRMKARERNVGWRIDYFLVSERLLANVQDALIFDETE--------- 238
Query: 332 YGSDHCPVSLELS 344
GSDHCPV L ++
Sbjct: 239 -GSDHCPVGLNIN 250
>gi|329768092|ref|ZP_08259601.1| exodeoxyribonuclease III [Gemella haemolysans M341]
gi|328838247|gb|EGF87859.1| exodeoxyribonuclease III [Gemella haemolysans M341]
Length = 254
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 142/311 (45%), Gaps = 67/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +++N N L V N+ E +F D D LQE +M A G D
Sbjct: 1 MKCISFNVNGLRAIVGKNFEE--DF-KKLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y +++ A+ K Y+GTA+ K +P V++ +
Sbjct: 47 ------------------FNGYYSYFNYAERKGYSGTAIYTKH--EPINVTYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI E++ F+ + Y PN+G E + R W++ + ++L+ + K ++ CGD
Sbjct: 87 TEGRVITLEYDKFFFITVYTPNSG--SELKRLEYRMSWEEDFKNYLLELNKTKGIVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER++F +L G ID +R+
Sbjct: 145 LNVAHTEIDLKNP---------------KSNTKNAGFTQEEREKFTKLLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + RIDYF+VS +L+ + + + +GS
Sbjct: 189 YN--PDLTGAYSWWSYRFNARKNNAGWRIDYFLVSRDLEKYLESAAIHNE------IFGS 240
Query: 335 DHCPVSLELSE 345
DHCPV L L +
Sbjct: 241 DHCPVELVLKD 251
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 136/309 (44%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L +K + E +F+ D DV ALQE +M P D P
Sbjct: 3 MKCISWNVNGLRACLKKGFME--SFVK-LDADVFALQETKMQPEQAILDLP--------- 50
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
Y+ +W+ A+ K Y+GTA+ + +P V++ L
Sbjct: 51 ---------------------GYRQYWNSAERKGYSGTAVFSR--IEPLAVTYGLGIEEH 87
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
+GRVI EF Y + Y PN+ K R +W+ + +++ K P+I CG
Sbjct: 88 DHEGRVITLEFPDCYFVTVYTPNS--KRGLERLAYRMEWEDAFRAYLVALDAKKPVIVCG 145
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+H EID+ +P K + GFT ER +F +L G ID +R
Sbjct: 146 DLNVAHTEIDLKNP---------------KTNHHNAGFTDEERGKFTELLDAG-FIDTFR 189
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ ++ + WS + RIDYF+ S L+++I + +GS
Sbjct: 190 ALYPDRTGIYTW-WSYLRKARDTNAGWRIDYFVTSARLREKIADATIHNE------VFGS 242
Query: 335 DHCPVSLEL 343
DHCPV LEL
Sbjct: 243 DHCPVGLEL 251
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 133/289 (46%), Gaps = 57/289 (19%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
I + D D++ LQE + LKD A+ E+ L+R P ++
Sbjct: 1 IGQLINSEDADILCLQETK---------------LKDSDVAACEK---LLR----PGLQD 38
Query: 123 YQIWW--SLADSKYAGTALLVKKCFQPKKVSFSLEKTD----GRVILAEFETFYLLNTYA 176
+ ++ S+A Y+G A+L + +P V+ L K D GRVI AE+ +FY++N Y
Sbjct: 39 WHFYFNNSIAKKGYSGVAVLSRA--KPLSVTNGLGKEDHDQEGRVITAEYPSFYVVNVYV 96
Query: 177 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 235
PN+G + + R WD +++ KP+I GDLN +H+EID+ P
Sbjct: 97 PNSGEGLKRLEY-RVGSWDVAFADYLAGLGAKKPVILTGDLNCAHQEIDIHDP------- 148
Query: 236 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 295
K + GFT ERK F A L + D +R K D+ W+ +
Sbjct: 149 --------KRNLKSAGFTEEERKSFSAQLLQRGFKDTFR--EKYPDVVGYTYWNYRTGAR 198
Query: 296 YRGKRMRIDYFIVSEELKDRIIACEMQGHGI-ELEGFYGSDHCPVSLEL 343
R + R+DYF+VSE L +R+ H I L GSDHCPV L L
Sbjct: 199 VRNRGWRLDYFLVSEALAERV-------HDIFHLPDVQGSDHCPVGLVL 240
>gi|366086404|ref|ZP_09452889.1| exodeoxyribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 252
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 132/308 (42%), Gaps = 70/308 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A K D P +Q
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVKLDLPGYYQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGMGIPEH 85
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
+GR+I E+ FYL+ Y PN+G E R++WDK + + Q + KPL++CG
Sbjct: 86 DKEGRIITLEYPKFYLMTVYTPNSG--GELKRLDYRQQWDKDFRAYTNQLAEKKPLVYCG 143
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HE ID+ + +K + GFT ER F LK G ID +R
Sbjct: 144 DLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLKSG-FIDTFR 187
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
L+ +S WS + RIDYF+ S + + ++ L G
Sbjct: 188 HLYPNT---VTYSWWSYRFHARANNAGWRIDYFVASSNFQPYVKDAKI------LTDVMG 238
Query: 334 SDHCPVSL 341
SDHCPV L
Sbjct: 239 SDHCPVEL 246
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 60/307 (19%)
Query: 65 NFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQ 124
+FI PD++ LQE + +L D+ + K Y
Sbjct: 44 DFIEHEQPDILCLQETKC----------TEDQLPDEARH----------------IKGYH 77
Query: 125 IWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNG 180
+W YAG A+ +K P VS+ L + DGR++ AE+E FYL+ Y PN G
Sbjct: 78 PYWLCKPGGYAGVAIYSRK--MPIHVSYGLGDEEQDQDGRLLTAEYEKFYLVCVYVPNAG 135
Query: 181 WKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 239
K + +R +WD++ +++ + S KP+I CGD+NV+HEEID+++P+
Sbjct: 136 NKLV--TLPKRMRWDEKFHQYLRELDSKKPVILCGDMNVAHEEIDLANPK---------- 183
Query: 240 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 299
NK++ GFT ER +L G +D +R L+ ++ F W+ +G R K
Sbjct: 184 --TNKKN---AGFTQEERDGLSKLLSFG-FVDTFRQLYPDRKAAYSF-WTY--MGGARAK 234
Query: 300 RM--RIDYFIVSEELKDRIIACEMQGHGIELE----GFYGSDHCPVSLELSEASSDSEKR 353
+ R+DYFIVS+ D++ M H G G ++ V ++L S + E
Sbjct: 235 NVGWRLDYFIVSQRFTDKVTDNVMAEHSASPTAPHGGAPGEEYGGVFIDLHFLSEEEETD 294
Query: 354 EKKNLDE 360
+ LDE
Sbjct: 295 LIRTLDE 301
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 62/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN + L VK + +++ PDV+ LQE +
Sbjct: 57 MKITSWNVDGLRAWVKK---KGLDWVRDEAPDVLCLQETKCA------------------ 95
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEK--- 156
EK + S P F + +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 96 -----EKSLPDEITSMPEFPHK--YWAGSDEKEGYSGVAMLCKT--EPLKVTYGIGKEEH 146
Query: 157 -TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 214
+GRVI AEF TF+L+ Y PN+G R+ WD + ++ KPL+ CG
Sbjct: 147 DKEGRVITAEFPTFFLVTAYVPNSG--RGLVRLDYRKTWDVEFKAYLSDLDKRKPLVLCG 204
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HEEID+ + +K + GFT ER+ F +L G D++R
Sbjct: 205 DLNVAHEEIDLKN---------------SKGNKKNAGFTAEEREGFNQLLAAG-FTDSFR 248
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ E+ F W+ + + R+DYF++S L + +++ + GS
Sbjct: 249 ELYPEQANAYTF-WTYMMNSRSKNVGWRLDYFVLSSALLPGLCDSKIRNQAM------GS 301
Query: 335 DHCPVSLEL 343
DHCP++L +
Sbjct: 302 DHCPITLHM 310
>gi|424756722|ref|ZP_18184524.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
gi|402408116|gb|EJV40605.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
Length = 251
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 135/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFIVTCYTPNS--QAELKRLAYRMTWEDAFSAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTDLLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|294787015|ref|ZP_06752269.1| exodeoxyribonuclease III [Parascardovia denticolens F0305]
gi|315226658|ref|ZP_07868446.1| exodeoxyribonuclease [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|294485848|gb|EFG33482.1| exodeoxyribonuclease III [Parascardovia denticolens F0305]
gi|315120790|gb|EFT83922.1| exodeoxyribonuclease [Parascardovia denticolens DSM 10105 = JCM
12538]
Length = 277
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 139/322 (43%), Gaps = 67/322 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF-------ITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+KFVTWN +SL + + E S I P V A+QE ++PAAG P
Sbjct: 1 MKFVTWNIDSLNAALTGD-SERSRLSRQVLHDIAACSPQVFAIQETKLPAAG----PSKK 55
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVK-------K 143
Q KAS E F Y I W A YAGT L +
Sbjct: 56 Q------KASLESI-----------FPGYWIAWRSSQEPARKGYAGTMCLYRPEGGQEVS 98
Query: 144 CFQPKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
P+ + ++GR++ EF FYL + Y PN+G + + R+ WD R + ++
Sbjct: 99 PLYPQIGAPEPMDSEGRILTLEFPGFYLTDVYTPNSG--DGLRRLEERQVWDDRYRSYLQ 156
Query: 204 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
KP+I CGD NV+HEEID++HP N+ GFT ER +FG
Sbjct: 157 DLDQVKPVIACGDFNVAHEEIDLAHPA------------SNRR---SAGFTDEERDKFGQ 201
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI-GKYRGKRMRIDYFIVSEELKDRIIACEM 321
+L G D +R LH + + W+ + K RIDY++VS+ L D++ +
Sbjct: 202 LLDAG-FADTFRRLHPNQAGVYTW-WAQRAVTSKANNSGWRIDYWLVSDRLMDKVRGVSV 259
Query: 322 QGHGIELEGFYGSDHCPVSLEL 343
G DH P+ +E+
Sbjct: 260 MDTGER------RDHAPLVMEI 275
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 140/309 (45%), Gaps = 66/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + + ++ D++ LQE ++ D
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETKADILCLQETKVQ----------------DG 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+ S + + Y +W+ A K Y+GTA+ K+ +P V + L D
Sbjct: 43 QVSLQ-------------LEGYHDYWNYAVKKGYSGTAVFSKE--KPLHVFYGLGIDDHD 87
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE +++N Y PN K R +W+ +E++ + KP+I CGD
Sbjct: 88 QEGRVITLEFENLFVVNCYTPNA--KRGLERIDYRLQWEADFKEYLQKLDRKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER+ F A+L G D++R+
Sbjct: 146 LNVAHREIDLKNP---------------KANRKNAGFSDQEREAFSALLNTG-FTDSFRY 189
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ D + G+S WS + + R+DY IVS+ LK RI + GS
Sbjct: 190 LY--PDREGGYSWWSYRTNAREKNIGWRLDYVIVSDRLKPRISEAAI------CADIMGS 241
Query: 335 DHCPVSLEL 343
DHCPV + +
Sbjct: 242 DHCPVEMTV 250
>gi|310831095|ref|YP_003969738.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386279|gb|ADO67139.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 262
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 144/312 (46%), Gaps = 59/312 (18%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
P K + WN N + +K + + I T P +I + E ++ D
Sbjct: 2 PTKIIAWNINGIKAHLKKD--NLFDLIETEKPHIICMGETKISCPFI------------D 47
Query: 101 TKASREEKLILMRALSSPPFKNYQI-WWS--LADSKYAGTALLVKKCFQPKKVSFSL--- 154
+ +EK+ K Y+ +WS L Y+GTA+ K+ +P +
Sbjct: 48 VQNQLKEKI-----------KGYKYRYWSPCLVKKGYSGTAIFSKR--KPISTYLGMNQP 94
Query: 155 -EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 212
E +GR+I EF+ +YL++ Y PN+G + R +WDK +++ KP+I
Sbjct: 95 GEDDEGRMITLEFKEYYLIHVYTPNSGQGLVRLQY-RTEEWDKNFRKYCANLQKIKPIII 153
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272
CGDLNV++E ID+++P NK++ GFT ERK F L + LID
Sbjct: 154 CGDLNVANENIDLANPS------------SNKKN---AGFTDVERKSFKLTLTKLNLIDT 198
Query: 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332
+R+L+ D+ F W+ + + RIDYF+VSE+L ++ + H
Sbjct: 199 FRYLY-PTDIKYSF-WTYYHNARPKNIGWRIDYFLVSEKLLPKVKDSNILTH------IM 250
Query: 333 GSDHCPVSLELS 344
GSDH PV L+L+
Sbjct: 251 GSDHAPVILKLT 262
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 142/311 (45%), Gaps = 67/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +++N N L V N+ E +F D D LQE +M A G D
Sbjct: 1 MKCISFNVNGLRAIVGKNFEE--DF-KQLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
F Y +++ A+ K Y+GTA+ K +P V++ +
Sbjct: 47 ------------------FDGYYSYFNYAERKGYSGTAIYTKH--EPLNVTYGIGIEEHD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GRVI E++ F+ + Y PN+G E + R W++ + ++L + K ++ CGD
Sbjct: 87 TEGRVITLEYDKFFFITVYTPNSG--SELKRLEYRMSWEEDFKNYLLALNKTKGVVVCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GFT ER++F +L G ID +R+
Sbjct: 145 LNVAHTEIDLKNP---------------KSNMKNAGFTPEEREKFTKLLDAG-FIDTFRY 188
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D+ +S WS + RIDYF+VS +L++ + + + +GS
Sbjct: 189 YN--PDLTGAYSWWSYRFNARKNNAGWRIDYFLVSRDLEEYLESAAIHNE------IFGS 240
Query: 335 DHCPVSLELSE 345
DHCPV L L +
Sbjct: 241 DHCPVELVLKD 251
>gi|423068996|ref|ZP_17057784.1| exodeoxyribonuclease [Streptococcus intermedius F0395]
gi|355365396|gb|EHG13119.1| exodeoxyribonuclease [Streptococcus intermedius F0395]
Length = 275
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 139/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F S ++GR+I EF+ F++ Y PN G + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDKKYADYLTAL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
G D +R++H D+ +SW + K RIDY++ S + ++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIAGKVTKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPIVLEI 273
>gi|409082189|gb|EKM82547.1| hypothetical protein AGABI1DRAFT_111155 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 326
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 41/233 (17%)
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSL------EKTDGRVILAEFETFYLLNTYAPN 178
+WS++ K Y+GTA+L K +P V+ +L + GR+I EFE +YL+ TY N
Sbjct: 114 YWSISSKKSYSGTAILSK--HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYVVN 171
Query: 179 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 237
G E + + +++W++ + ++ KP+IW GDLNV+ ID+++
Sbjct: 172 AG--VELKTLEDKKEWNQHFENYIRDLDKVKPVIWTGDLNVAPTAIDLAN---------- 219
Query: 238 GYVPPNKEDWGQ-PGFTIAERKRFGAIL------KEGRLIDAYRFLHKEKDMDCGFSWSG 290
K +W + PG+T AE F IL G+ +D +R LH + FS+
Sbjct: 220 -----AKRNWNKTPGYTEAETSSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSYRF 274
Query: 291 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
N + +G R+D F++SE + +R+ CE++ E + SDHCPV +E+
Sbjct: 275 N--CRLKGLGWRLDMFVLSERIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|346311925|ref|ZP_08853923.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
gi|345899662|gb|EGX69501.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
Length = 277
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 136/324 (41%), Gaps = 82/324 (25%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDDT 101
K +WN N L +K + P F + + D DVIALQE ++ + D P HQ
Sbjct: 11 KLASWNVNGLRAVLKKD-PSFIDIVHQLDADVIALQETKLQEGQVEIDLPGYHQV----- 64
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS------- 153
WS A K Y+GTA+ + +P V +
Sbjct: 65 -------------------------WSYAQRKGYSGTAVFTR--VEPLSVRHADSLLPFA 97
Query: 154 ----------LEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
+ T+GRV EF+ F+ ++ Y PN + E R WD + F+
Sbjct: 98 GEGEAAELLAVAATEGRVCALEFDRFWFVDVYTPNA--QNELARIDTRMAWDDAYRAFLK 155
Query: 204 QC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 260
+GKP+I CGD NV+H EID+ +P K + G GF+ ER +F
Sbjct: 156 SLEDETGKPVITCGDFNVAHNEIDLKNP---------------KSNRGNAGFSDEERSKF 200
Query: 261 GAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 319
+L G D +R L+ D++ +S WS + RIDYF+VS+ + +
Sbjct: 201 TELLDAG-FTDTWRSLN--PDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDAIASNVRDA 257
Query: 320 EMQGHGIELEGFYGSDHCPVSLEL 343
++ +GSDHCPV LE+
Sbjct: 258 RIRND------IFGSDHCPVELEI 275
>gi|395244503|ref|ZP_10421467.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483150|emb|CCI82475.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 265
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 140/315 (44%), Gaps = 71/315 (22%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNH 94
++ +KF++WN N +++ F+ TF + D+ +Q++R+
Sbjct: 8 RRITMKFISWNVNGFRAAMRHG------FLDTFKELNADIFGMQDIRLSP---------- 51
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 154
E+ DT YQ W + + GTA+ K +P V+ +
Sbjct: 52 NEVSIDTTGY------------------YQYWNYSKEKSFDGTAIFTK--IKPLAVANGI 91
Query: 155 EKTD----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKP 209
++ GR I E+ FY + TY P +G E+ R WD+ ++++L+ + KP
Sbjct: 92 GVSEFDQQGRTITLEYPNFYFVTTYVPFSG--EQLQRLDFRIAWDQAFRKYLLKLEANKP 149
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
+I GD++V+HE ID++ P E+ GFT ER F +L G
Sbjct: 150 VIIGGDMSVAHEPIDLAQP---------------SENHHHAGFTEQERDDFTKLLNSG-F 193
Query: 270 IDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 328
D +R+LH EKD+ WS G+ + + R+DY +VS L +I + L
Sbjct: 194 TDTFRYLHPNEKDIYS--YWSYRYHGREKNEGWRLDYILVSNSLDSKIKKANI------L 245
Query: 329 EGFYGSDHCPVSLEL 343
GSDHCPVSLE+
Sbjct: 246 TEIPGSDHCPVSLEM 260
>gi|257079900|ref|ZP_05574261.1| exonuclease III [Enterococcus faecalis JH1]
gi|294779916|ref|ZP_06745298.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|307269235|ref|ZP_07550589.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|397700923|ref|YP_006538711.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
gi|422866830|ref|ZP_16913440.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|256987930|gb|EEU75232.1| exonuclease III [Enterococcus faecalis JH1]
gi|294453028|gb|EFG21448.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|306514454|gb|EFM83015.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|329578016|gb|EGG59431.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|397337562|gb|AFO45234.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
Length = 251
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 136/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GR+I E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRMITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|426200016|gb|EKV49940.1| hypothetical protein AGABI2DRAFT_190373 [Agaricus bisporus var.
bisporus H97]
Length = 326
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 41/233 (17%)
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSL------EKTDGRVILAEFETFYLLNTYAPN 178
+WS++ K Y+GTA+L K +P V+ +L + GR+I EFE +YL+ TY N
Sbjct: 114 YWSISSKKSYSGTAILSK--HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYVVN 171
Query: 179 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 237
G E + + +++W++ + ++ KP+IW GDLNV+ ID+++
Sbjct: 172 AG--VELKTLEDKKEWNQHFENYIRDLDKVKPVIWTGDLNVAPTAIDLAN---------- 219
Query: 238 GYVPPNKEDWGQ-PGFTIAERKRFGAIL------KEGRLIDAYRFLHKEKDMDCGFSWSG 290
K +W + PG+T AE F IL G+ +D +R LH + FS+
Sbjct: 220 -----AKRNWNKTPGYTEAETTSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSYRF 274
Query: 291 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
N + +G R+D F++SE + +R+ CE++ E + SDHCPV +E+
Sbjct: 275 N--CRLKGLGWRLDMFVLSERIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|116628238|ref|YP_820857.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMD-9]
gi|386087152|ref|YP_006003026.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387910253|ref|YP_006340559.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
gi|116101515|gb|ABJ66661.1| Exonuclease III [Streptococcus thermophilus LMD-9]
gi|312278865|gb|ADQ63522.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387575188|gb|AFJ83894.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
Length = 275
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGDSTRAQLSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +Y I W A YAGT L KK P ++
Sbjct: 58 QILEDY------------------FPDYVITWRSSVEPARKGYAGTMFLYKKELTPV-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ S +GR+I EF+TF++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPSTMDCEGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDEKYADYLAEL 156
Query: 206 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+G ID YR H D+ ++W + K RIDY++ S + D++I M
Sbjct: 202 NKG-FIDTYR--HLNGDVTGAYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSNMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGDR------QDHTPIVLEI 273
>gi|377809183|ref|YP_005004404.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361055924|gb|AEV94728.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 251
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 135/309 (43%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + F + D D +QE +
Sbjct: 1 MKLISWNVNGLRAAVTHG---FEDTFKDLDADFFCVQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
L + F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 38 ---------LQKGQIEIDFPGYYQYWNYAERKGYSGTAIFTKH--KPLNVTYGIGIEEYD 86
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
T+GR+I E+ +Y++ Y PN+ + + + R W+ + +V Q KP+I+CGD
Sbjct: 87 TEGRIITLEYANYYVITCYTPNS--QPKLKRLEYRMSWEDAFKNYVDQLKKDKPVIFCGD 144
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER +F +L+ G D +R
Sbjct: 145 LNVAHNEIDLKNP---------------KTNHKNAGFSDQERAKFTELLQSG-FTDTFR- 187
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D+ +S WS + RIDYF+ S +L D++ ++ +GS
Sbjct: 188 -HFYPDLTGIYSWWSYRFNARKNNAGWRIDYFVTSNDLDDKLKDAKIHTE------IFGS 240
Query: 335 DHCPVSLEL 343
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 140/309 (45%), Gaps = 66/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + + ++ + D++ LQE ++ D
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETEADILCLQETKVQ----------------DG 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+ S + + Y +W+ A K Y+GTA+ K+ +P V + L D
Sbjct: 43 QVSLQ-------------LEGYHAYWNYAVKKGYSGTAVFSKE--KPLHVFYGLGIDDHD 87
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE +++N Y PN K R +W+ ++++ + KP+I CGD
Sbjct: 88 QEGRVITLEFEHVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER+ F A+L G D++R+
Sbjct: 146 LNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNAG-FTDSFRY 189
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ D + +S WS + + R+DY IVS+ LK RI + GS
Sbjct: 190 LY--PDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAI------CADIMGS 241
Query: 335 DHCPVSLEL 343
DHCPV + L
Sbjct: 242 DHCPVEMTL 250
>gi|218281326|ref|ZP_03487814.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
gi|218217511|gb|EEC91049.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
Length = 249
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 138/307 (44%), Gaps = 65/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K +F + D D+ +QE T
Sbjct: 1 MKCISWNVNGIRAVLKK---DFVEILYALDADIFCIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL----EKT 157
KA ++ I + P YQ S Y+GT + K+ +P + + + T
Sbjct: 37 KAQPDQ--IEVDCELYP----YQYINSAQKKGYSGTMIFCKE--EPLSIRYGMNMEEHDT 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLN 217
+GRVI E+ +Y++ Y PN+G + R +WDK + L+ KP++ CGD N
Sbjct: 89 EGRVITLEYPEYYVVTVYTPNSG--DGLKRLDYRMEWDKAFSAY-LKSLDKPVMACGDFN 145
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V++EEID+ +P K + GFT ER F L +D YR L+
Sbjct: 146 VANEEIDIKNP---------------KTNHKNAGFTDEERNSFKENLL-AYFVDTYRSLY 189
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
EK +S WS + + RIDY++VS ELKD+I+ ++ L YGSDH
Sbjct: 190 PEK---VEYSWWSYRFKAREKNAGWRIDYWLVSPELKDKIVDAKI------LTDIYGSDH 240
Query: 337 CPVSLEL 343
CPV L++
Sbjct: 241 CPVQLDI 247
>gi|313891277|ref|ZP_07824895.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|416852294|ref|ZP_11909439.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
gi|313120344|gb|EFR43465.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|356739783|gb|EHI65015.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
Length = 275
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 143/321 (44%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
E IL F NY +W S A YAGT L K+ P V+
Sbjct: 58 ET------------ILSY------FPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
F + ++GR+I EFE F++ Y PN G + R++WD + +++ Q
Sbjct: 99 FPEIGAPTTMDSEGRIITLEFEDFFVTQVYTPNAG--DGLRRLADRQEWDIKYADYLTQL 156
Query: 206 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID+++P N+ GFT ER F A+L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SAGFTDEERAGFTALL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R LH D+ ++W + K RIDY++ S + D+++ EM
Sbjct: 202 EKG-FTDTFRHLH--GDLPNVYTWWAQRSKTSKMNNTGWRIDYWLTSNRIADKVLKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPILLEI 273
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|355627198|ref|ZP_09049134.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|354820443|gb|EHF04859.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 135/308 (43%), Gaps = 67/308 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F + D D+ +QE ++ G D
Sbjct: 3 KLISWNVNGLRACVGKG---FLDIFKELDADIFCIQESKL-QGGQIDLE----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKT 157
Y +WS A+ K Y+GTAL K+ +P V++ L
Sbjct: 48 -----------------LDGYYQYWSYAEKKGYSGTALFTKE--EPLSVTYGLGIEAHDH 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 216
+GRVI AEF +Y++ Y PN+ ++ R +W+ ++ + KP+I+CGDL
Sbjct: 89 EGRVITAEFPDYYVITCYTPNS--QDGLARLPYRMQWEDDFLSYLKKLEEHKPVIFCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GFT ER +F +L+ G ID YR
Sbjct: 147 NVAHREIDLKNP---------------KSNRKNAGFTDEERGKFTQLLESG-FIDTYR-- 188
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
H D + +S WS + + RIDYF VS+ L+DR+ + + GSD
Sbjct: 189 HFYPDQEGIYSWWSYRFKAREKNAGWRIDYFCVSKALEDRLESAMIHTE------IMGSD 242
Query: 336 HCPVSLEL 343
HCPV L +
Sbjct: 243 HCPVELVI 250
>gi|330836714|ref|YP_004411355.1| exodeoxyribonuclease III [Sphaerochaeta coccoides DSM 17374]
gi|329748617|gb|AEC01973.1| exodeoxyribonuclease III Xth [Sphaerochaeta coccoides DSM 17374]
Length = 252
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 137/307 (44%), Gaps = 65/307 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KFV+WN N + + F ++ + D D+ LQE ++ QE + D +
Sbjct: 3 KFVSWNVNGIRSCLGKG---FLDYFFSTDADIFCLQETKL------------QEGQHDIE 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS----LEKT 157
+Y +W+ A K Y+GTAL K+ +P +V+F +E
Sbjct: 48 -----------------LPDYHQYWNYAQKKGYSGTALFSKE--KPVRVTFGIAPFIEDA 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRVI AE+ ++L+ Y PN+ + E R KWD + ++L KP+ CGDL
Sbjct: 89 EGRVITAEYPAYFLVCVYTPNS--QRELLRLDYRMKWDDAFRAYILSLEAMKPVFVCGDL 146
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H+EID+ +P K + GFT ER +F L G D++R L
Sbjct: 147 NVAHKEIDLKNP---------------KSNVRNAGFTQEERDKFSLFLDAG-FTDSFRHL 190
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ +D WS + + RIDY++ S D+I + H GSDH
Sbjct: 191 YPHV-IDRYSWWSYMANARAKNIGWRIDYWLTSNRYADKIHDSLIDDH------IPGSDH 243
Query: 337 CPVSLEL 343
PV+L L
Sbjct: 244 APVALLL 250
>gi|85000047|ref|XP_954742.1| endonuclease [Theileria annulata strain Ankara]
gi|65302888|emb|CAI75266.1| endonuclease, putative [Theileria annulata]
Length = 586
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 148/332 (44%), Gaps = 43/332 (12%)
Query: 37 SKKDPLKFVTWNANSLLLRV--KNNWPEFSNFITTFDPDVIALQEVRMPAA--------- 85
S+KDP +TWN + L L K W F + DPD++ LQ+V++ ++
Sbjct: 270 SEKDPKTILTWNVSGLALSKSKKTIWESFLQILKQHDPDIVVLQDVKLCSSEILGKQPKL 329
Query: 86 -----GSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL 140
G +P QE++D L+ L FK Y + SL+ + AG +
Sbjct: 330 SARTYGGHVSPSYAQEVQDAD---------LVNELKRTTFKKYYLVHSLSAWRIAGQLVF 380
Query: 141 VKKCFQPKKVSFSL--------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 192
VKK F+ K+ ++L +GR I+ +F +FYL++ +P GW S + R
Sbjct: 381 VKKEFECLKMRYNLNIKANAKYHHPEGRCIILQFNSFYLISLLSPVQGWI--NRSVRIRS 438
Query: 193 KWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 251
+WD+ + F+ S K I G LN + ++ID+S PE K V +E+ G PG
Sbjct: 439 RWDRELATFLNNSKSEKATIITGCLNCAPQDIDLSDPERLKQEK--SIVLHKQEELGFPG 496
Query: 252 FTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEE 311
+R+ F +L G ++D +R H D N K R +R + ++S+
Sbjct: 497 SRDVDREGFKWLLDAGNMVDVFRVKHP---YDGTEKTEKNINDKTRCA-VRTNLVLMSKN 552
Query: 312 LKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ CE+ G+ +L G H P L L
Sbjct: 553 FLRNVKFCEIIGNVNDLNP-SGWRHLPQLLRL 583
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 66/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L ++ F +F D+ A+QE+++ QE + D
Sbjct: 1 MKLISWNVNGLRACIRKG---FLSFFEEAGADLFAVQEIKL------------QEGQVDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVK----KCFQPKKVSFSLEK 156
+ Y+ +W+ A+ K Y+GTA+ K + F+ V ++
Sbjct: 46 -----------------DLQGYRQYWNYAEKKGYSGTAVFTKVEPLRVFR-NGVGNERQQ 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGD 215
++GR++ EF +F+L+N Y PN+ + + R +W+ ++ + KP+I CGD
Sbjct: 88 SEGRILTLEFASFFLVNVYTPNS--QRDLARLHERLQWEDAFYAYLQELENEKPVIVCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
+NV+HEEID+ + K + G GFT ER + + E LID+YR+
Sbjct: 146 MNVAHEEIDLRNA---------------KSNRGNSGFTTEERAKMTRLQSEW-LIDSYRY 189
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
+ D + ++ WS + R RIDYF+VS++LK + + + GS
Sbjct: 190 YY--PDQEGAYTWWSYMKTVRERNIGWRIDYFLVSDKLKSAMNDVSIYSDVL------GS 241
Query: 335 DHCPVSLELS 344
DHCP+ L ++
Sbjct: 242 DHCPIGLTMA 251
>gi|390176534|ref|XP_003736152.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858704|gb|EIM52225.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 675
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 32/227 (14%)
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD----GRVILAEFETFYLLNTYAPN 178
Y +W YAG A+ K P V + + + GR+I AE+E FYL+N Y PN
Sbjct: 475 YHPYWLCMPGGYAGVAIYSK--IMPINVEYGIGNEEFDDVGRMITAEYEKFYLINVYVPN 532
Query: 179 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 237
+G K + + R +W+K +V + K ++ CGD+NVSH EID+ +P
Sbjct: 533 SGRK--LVNLEARMRWEKLFHSYVQKLDALKAVVICGDMNVSHNEIDLENP--------- 581
Query: 238 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 297
K + GFT ER + +L G +D +R L+ +K + W+ + R
Sbjct: 582 ------KTNTKNAGFTKEERDKMTELLGLG-FVDTFRHLYPDKKGAYTY-WTYMSNARAR 633
Query: 298 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DY IVSE R++ H I + GSDHCP+++ L+
Sbjct: 634 NVGWRLDYCIVSERFVPRVV-----DHVIRKQ-LLGSDHCPITVFLN 674
>gi|295099755|emb|CBK88844.1| exodeoxyribonuclease III [Eubacterium cylindroides T2-87]
Length = 249
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 65/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F + + T D D+ +QE + A + E+ D
Sbjct: 1 MKLISWNVNGIRAVLNKG---FIDILNTLDADIFCIQETK--------AQPDQIEVDCD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE----KT 157
L L + ++S K Y +GT + K +P V + ++ T
Sbjct: 49 -------LYLYQYINSAQRKGY-----------SGTMIFSK--IEPLSVHYGIDIPEHDT 88
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLN 217
+GRVI EF+++Y++ Y PN+G + + R +WDK ++ Q KP++ GDLN
Sbjct: 89 EGRVITLEFDSYYVVTVYTPNSG--DGLKRLEYRMEWDKAFSNYI-QSLDKPVLLTGDLN 145
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V++EEID+ +P K + GFT ER F L L D+YR L+
Sbjct: 146 VANEEIDIKNP---------------KTNRRNAGFTDEERDSFKKNLLT-ILKDSYRTLY 189
Query: 278 KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+K +S WS + + RIDY++VSEEL ++ ++ L YGSDH
Sbjct: 190 PDK---VEYSWWSYRFKAREKNAGWRIDYWLVSEELMPKVKDSKI------LTDIYGSDH 240
Query: 337 CPVSLEL 343
CPV LE+
Sbjct: 241 CPVQLEI 247
>gi|306834074|ref|ZP_07467194.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
gi|304423647|gb|EFM26793.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
Length = 275
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 140/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAVMSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F Y++ W A YAGT L K P +S
Sbjct: 58 QILQDY------------------FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPS-IS 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ ++GR+I EF+ F++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPDTMDSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLTEL 156
Query: 206 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DQVKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+G D +R++H D+ +SW + K RIDY++ S + D+I EM
Sbjct: 202 AKG-FTDTFRYIH--GDIPDVYSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPIVLEI 273
>gi|312900096|ref|ZP_07759412.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
gi|311292731|gb|EFQ71287.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
Length = 251
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 136/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L K N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVFKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W+ A+ K Y+GTA+ K+ + +E D
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIEAHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 217
GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I CGDLN
Sbjct: 89 GRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H++ID+ + K + GFT ER++F +L G D +R+ +
Sbjct: 147 VAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
E + + WS + RIDYF+VSE L +R+++ ++ + GSDHC
Sbjct: 191 PEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHC 243
Query: 338 PVSLEL 343
PV + L
Sbjct: 244 PVEVVL 249
>gi|288905926|ref|YP_003431148.1| 3'-exo-deoxyribonuclease [Streptococcus gallolyticus UCN34]
gi|306831945|ref|ZP_07465100.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325978892|ref|YP_004288608.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336064803|ref|YP_004559662.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
gi|386338368|ref|YP_006034537.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732652|emb|CBI14224.1| putative 3'-exo-deoxyribonuclease [Streptococcus gallolyticus
UCN34]
gi|304425871|gb|EFM28988.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178820|emb|CBZ48864.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281004|dbj|BAK28578.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334283003|dbj|BAK30576.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
Length = 275
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 140/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAVMSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F Y++ W A YAGT L K P +S
Sbjct: 58 QILQDY------------------FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPS-IS 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ ++GR+I EF+ F++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPDTMDSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAEL 156
Query: 206 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DQVKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+G D +R++H D+ +SW + K RIDY++ S + D+I EM
Sbjct: 202 AKG-FTDTFRYIH--GDIPDVYSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPIVLEI 273
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 140/310 (45%), Gaps = 70/310 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + DV+ QE ++ A G +++
Sbjct: 237 VKLMSWNVNGLRALLKLEGFSAVELAQRENFDVLCFQETKLQAKGYENS----------- 285
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSL----E 155
+W+ + SK Y+GTA++ + +P VS+ L
Sbjct: 286 ------------------------FWTCSHSKLGYSGTAIVSR--VKPLSVSYGLGIADH 319
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 214
++GR++ AEF++FYLLN Y PN+G + S+ R +WD + ++ + KP+I G
Sbjct: 320 DSEGRLVTAEFDSFYLLNAYVPNSGDGLKRLSY-RVSQWDLSLSNYMKELEKSKPVILNG 378
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLN +H+EID+ +P A + N GFT ER+ F +D++R
Sbjct: 379 DLNCAHQEIDIYNP---AGNRRNA------------GFTDEERQSFETNFLSRGFVDSFR 423
Query: 275 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
H + G++ W G+ K R+DYF+VSE + D++ + + G
Sbjct: 424 KQHPDV---VGYTYWGYRHGGRKTNKGWRLDYFLVSESISDQVHDSYI------VPDVTG 474
Query: 334 SDHCPVSLEL 343
SDHCP+ L L
Sbjct: 475 SDHCPIGLVL 484
>gi|313887924|ref|ZP_07821603.1| exodeoxyribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846090|gb|EFR33472.1| exodeoxyribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 275
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 57/317 (17%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +S+ L +N + S I DPD+IA+QE ++P G K H+
Sbjct: 1 MKIISWNIDSINAALTSDSNRAQMSREVLATILREDPDIIAIQETKLPKGGPS---KKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ + A + + S P A YAG KK +P ++
Sbjct: 58 EILAEMFADYDYVFVS----SEEP----------ARKGYAGNMAFFKKGLEPTVTFPKID 103
Query: 156 KTD-----GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 209
D GR+I EF+ F+L Y PN G E R+ WD++ E++ KP
Sbjct: 104 APDTMDFEGRIITLEFDDFFLTQVYTPNAG--GELKRLPLRQIWDEKYGEYLSSLDEIKP 161
Query: 210 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 269
+I GD NV+H+EID+++P+ +++ GFT ER+ F +L G
Sbjct: 162 VIATGDFNVAHKEIDLANPD---GNRMSA------------GFTDEERQGFTNLLDRG-F 205
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
D +R +H D++ F+W + K RIDYFIVS+ +KD + +M G
Sbjct: 206 TDTFRHIH--GDVEGVFTWWAQRVKTSKINNSGWRIDYFIVSDRIKDLVKDSKMIDSGER 263
Query: 328 LEGFYGSDHCPVSLELS 344
DH P+ L+++
Sbjct: 264 ------QDHTPILLDIN 274
>gi|450062698|ref|ZP_21844475.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
gi|449205430|gb|EMC06177.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
Length = 275
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPTTMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|390176532|ref|XP_001356149.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388858703|gb|EAL33209.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 648
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 32/227 (14%)
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD----GRVILAEFETFYLLNTYAPN 178
Y +W YAG A+ K P V + + + GR+I AE+E FYL+N Y PN
Sbjct: 448 YHPYWLCMPGGYAGVAIYSK--IMPINVEYGIGNEEFDDVGRMITAEYEKFYLINVYVPN 505
Query: 179 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 237
+G K + + R +W+K +V + K ++ CGD+NVSH EID+ +P
Sbjct: 506 SGRK--LVNLEARMRWEKLFHSYVQKLDALKAVVICGDMNVSHNEIDLENP--------- 554
Query: 238 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 297
K + GFT ER + +L G +D +R L+ +K + W+ + R
Sbjct: 555 ------KTNTKNAGFTKEERDKMTELLGLG-FVDTFRHLYPDKKGAYTY-WTYMSNARAR 606
Query: 298 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DY IVSE R++ H I + GSDHCP+++ L+
Sbjct: 607 NVGWRLDYCIVSERFVPRVV-----DHVIRKQ-LLGSDHCPITVFLN 647
>gi|418035634|ref|ZP_12674088.1| Exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
gi|354690002|gb|EHE89964.1| Exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
Length = 265
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 126/289 (43%), Gaps = 65/289 (22%)
Query: 70 FDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL 129
DPDV+ALQE ++PA+G K HQ D F Y W
Sbjct: 25 LDPDVLALQETKLPASGPS---KKHQAALADL------------------FPEYDFVWRS 63
Query: 130 ----ADSKYAGTALLVKKCFQPKKVSFSL---EKTD--GRVILAEFETFYLLNTYAPNNG 180
A YAGT L KK +P + E D GR++ EF FY+ Y PN G
Sbjct: 64 SMEPARKGYAGTMFLYKKGLEPVVTRPEIGAPEPMDFEGRILTLEFPDFYVTQVYTPNAG 123
Query: 181 WKEEENSFQR---RRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKL 236
N R R++WDK + ++ + K P++ GD N +++EID+ HPE
Sbjct: 124 -----NGLVRLGDRQEWDKCYRAYLEELDKKKPVLASGDFNAAYQEIDLKHPE------- 171
Query: 237 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--G 294
+ GFT ER FG +L G D +R +H + ++ +SW +
Sbjct: 172 --------NNHHSAGFTDEERAGFGQLLAAG-FTDTFRQIHGQ--VEGVYSWWAQRVRTA 220
Query: 295 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
K RIDY++VS L D++ EM +E +DHCP+ LE+
Sbjct: 221 KANNSGWRIDYWLVSNRLADQVEKSEM------IETGERADHCPILLEV 263
>gi|403335404|gb|EJY66875.1| Exonuclease III [Oxytricha trifallax]
gi|403370677|gb|EJY85206.1| Exonuclease III [Oxytricha trifallax]
Length = 583
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 141/318 (44%), Gaps = 61/318 (19%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA---- 121
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
+ + K+Y+ +W+ + SK Y+GT L+ K +P KV+F
Sbjct: 122 -------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTF 160
Query: 153 SL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--- 205
+ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++ +
Sbjct: 161 DIGIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIE 219
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
+ KPLI GDLNV+ E+DV + K+ Y P ERK F + +
Sbjct: 220 TNKPLILTGDLNVARNELDVFDTK--GKDKVACYTP-------------EERKSFESFIN 264
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
G ID +R L+ +K FS N K K RIDYF+V ++ D + ++ H
Sbjct: 265 RG-YIDTFRHLYPDKREYTYFSARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH- 318
Query: 326 IELEGFYGSDHCPVSLEL 343
+ + GSDH PV L L
Sbjct: 319 ---KDYNGSDHVPVCLHL 333
>gi|418029721|ref|ZP_12668251.1| Exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
gi|354689333|gb|EHE89332.1| Exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
Length = 265
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 126/289 (43%), Gaps = 65/289 (22%)
Query: 70 FDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL 129
DPDV+ALQE ++PA+G K HQ D F Y W
Sbjct: 25 LDPDVLALQETKLPASGPN---KKHQAALADL------------------FPEYDFVWRS 63
Query: 130 ----ADSKYAGTALLVKKCFQPKKVSFSL---EKTD--GRVILAEFETFYLLNTYAPNNG 180
A YAGT L KK +P + E D GR++ EF FY+ Y PN G
Sbjct: 64 SMEPARKGYAGTMFLYKKGLEPVVTRPEIGAPEPMDFEGRILTLEFPDFYVTQVYTPNAG 123
Query: 181 WKEEENSFQR---RRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKL 236
N R R++WDK + ++ + K P++ GD N +++EID+ HPE
Sbjct: 124 -----NGLVRLGDRQEWDKCYRAYLEELDKKKPVLASGDFNAAYQEIDLKHPE------- 171
Query: 237 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--G 294
+ GFT ER FG +L G D +R +H + ++ +SW +
Sbjct: 172 --------NNHHSAGFTDEERAGFGQLLAAG-FTDTFRQIHGQ--VEGVYSWWAQRVRTA 220
Query: 295 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
K RIDY++VS L D++ EM +E +DHCP+ LE+
Sbjct: 221 KANNSGWRIDYWLVSNRLADQVEKSEM------IETGERADHCPILLEV 263
>gi|449881939|ref|ZP_21784704.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
gi|449250748|gb|EMC48797.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDGFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|24380027|ref|NP_721982.1| exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|290579994|ref|YP_003484386.1| exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449865178|ref|ZP_21778839.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
gi|449872318|ref|ZP_21781457.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449874956|ref|ZP_21781919.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449893395|ref|ZP_21788687.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449947417|ref|ZP_21807362.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449956392|ref|ZP_21809488.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449969030|ref|ZP_21812969.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449984183|ref|ZP_21818869.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449999354|ref|ZP_21824494.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|450005194|ref|ZP_21826552.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|450031272|ref|ZP_21833605.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|450035308|ref|ZP_21834949.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|450056224|ref|ZP_21841931.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|450081460|ref|ZP_21851743.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|450094138|ref|ZP_21856912.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|450098379|ref|ZP_21857975.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|450138344|ref|ZP_21872113.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|450143104|ref|ZP_21873237.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|450148336|ref|ZP_21875574.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|450166036|ref|ZP_21882130.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|450171670|ref|ZP_21884124.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|13182937|gb|AAK14994.1|AF233280_1 nuclease SmnA [Streptococcus mutans]
gi|24378017|gb|AAN59288.1|AE014995_5 putative exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|254996893|dbj|BAH87494.1| putative exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449152715|gb|EMB56415.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|449154571|gb|EMB58144.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449168602|gb|EMB71410.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449170674|gb|EMB73370.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449174469|gb|EMB76955.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449180434|gb|EMB82591.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449187090|gb|EMB88891.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|449188836|gb|EMB90526.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|449191780|gb|EMB93240.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|449195673|gb|EMB96986.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|449207002|gb|EMC07686.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|449215265|gb|EMC15472.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|449216620|gb|EMC16722.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|449221576|gb|EMC21344.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|449234127|gb|EMC33151.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|449236016|gb|EMC34952.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|449240040|gb|EMC38735.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|449243722|gb|EMC42131.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|449254334|gb|EMC52243.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449255826|gb|EMC53666.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449264441|gb|EMC61783.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|227432019|ref|ZP_03914038.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352217|gb|EEJ42424.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 285
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 153/332 (46%), Gaps = 77/332 (23%)
Query: 36 NSKKDP-LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG- 86
NS+ D LKF++WN +S+ +R + W N I T PDV A+QE ++ + G
Sbjct: 7 NSQGDENLKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGL 65
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKC 144
+K EL F Y ++ S A S Y+GT +L K
Sbjct: 66 TKKQATAIAEL----------------------FPEYHLYVNSSTARSGYSGTMVLSK-- 101
Query: 145 FQPKKVSFSL------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWD 195
+P +V + +GR+I EF TF+L Y PN+G +S R R +WD
Sbjct: 102 VEPIQVEYPTIGAPGPMDLEGRIITLEFPTFFLSTVYTPNSG-----SSLIRLPERGEWD 156
Query: 196 KRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 254
+ +E++ + + KP+I+ GD+NV+H+EID+ +P+ PN+ GFT
Sbjct: 157 DKYREYIKRLDATKPVIFSGDMNVAHQEIDLKNPK------------PNRH---SAGFTD 201
Query: 255 AERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG--NPIGKYRGKRMRIDYFIVSEEL 312
ER++F A+L G D +R L+ D ++W + K RIDY++VS+ +
Sbjct: 202 QEREKFSALLDAG-FTDTFRSLN--PDTPSVYTWWAQISKTSKINNSGWRIDYYLVSDRI 258
Query: 313 KDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+ + + G DH P+ LE++
Sbjct: 259 AENVTESCVIDTGAR------QDHAPILLEIN 284
>gi|167957331|ref|ZP_02544405.1| exonuclease III [candidate division TM7 single-cell isolate TM7c]
Length = 265
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 145/319 (45%), Gaps = 73/319 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ +WN N + +K F FI+ + PD++ LQE + A KN E+
Sbjct: 1 MRLYSWNVNGIRAVIKKG--TFLPFISEYQPDILCLQETK--------AKKNQVEI---- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVK---------------KCFQ 146
P + ++IW S + Y+GTA+ K K +
Sbjct: 47 --------------DLPDY--FEIWNSAERAGYSGTAIFSKAKPLNTWLDFPEDIVKKYN 90
Query: 147 PKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVLQC 205
+ + +GR+I AEF+ F + Y PN+ K + + Q R +KWDK E++ +
Sbjct: 91 LDQDDYGNPNNEGRIIAAEFDNFIVATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMKKL 148
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
S KP+++CGDLNV+H E D+++P+ PN G+ GFT ER F A +
Sbjct: 149 ESIKPVLFCGDLNVAHTEDDLANPK------------PNI---GKHGFTNEERAGFDAFI 193
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
+ G D +R K ++ N + R RIDY++ SE+L ++I E Q H
Sbjct: 194 QSG-FKDTFRIFTKGNGYYSWWTHWAN--ARARNIGWRIDYWLASEKLANKI--TEAQIH 248
Query: 325 GIELEGFYGSDHCPVSLEL 343
GSDHCPVS+ +
Sbjct: 249 ----PDIMGSDHCPVSVTI 263
>gi|403336088|gb|EJY67231.1| Exonuclease III [Oxytricha trifallax]
Length = 640
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 141/318 (44%), Gaps = 61/318 (19%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA---- 121
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
+ + K+Y+ +W+ + SK Y+GT L+ K +P KV+F
Sbjct: 122 -------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTF 160
Query: 153 SL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--- 205
+ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++ +
Sbjct: 161 DIGIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIE 219
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
+ KPLI GDLNV+ E+DV + K+ Y P ERK F + +
Sbjct: 220 TNKPLILTGDLNVARNELDVFDTK--GKDKVACYTP-------------EERKSFESFIN 264
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
G ID +R L+ +K FS N K K RIDYF+V ++ D + ++ H
Sbjct: 265 RG-YIDTFRHLYPDKREYTYFSARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH- 318
Query: 326 IELEGFYGSDHCPVSLEL 343
+ + GSDH PV L L
Sbjct: 319 ---KDYNGSDHVPVCLHL 333
>gi|417936679|ref|ZP_12579986.1| exodeoxyribonuclease III [Streptococcus infantis X]
gi|343400195|gb|EGV12715.1| exodeoxyribonuclease III [Streptococcus infantis X]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 142/317 (44%), Gaps = 59/317 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF--- 152
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EVLEELFPGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPT-ISFPEI 102
Query: 153 ---SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 208
S ++GR+I EF+TF++ Y PN G + + R+ WD + E++ Q K
Sbjct: 103 GAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQLDKQK 160
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P++ GD NV+H+EID+++P N+ PGFT ER+ F +L +G
Sbjct: 161 PVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLLAKG- 204
Query: 269 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 326
D +R +H D+ ++W + K RIDY++ S + D++ +M G
Sbjct: 205 FTDTFRHIH--GDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRVADKVTKSDMIDSGA 262
Query: 327 ELEGFYGSDHCPVSLEL 343
DH P+ LE+
Sbjct: 263 R------QDHTPIVLEI 273
>gi|450159907|ref|ZP_21879708.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
gi|449240671|gb|EMC39334.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERDGFTHLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|199597303|ref|ZP_03210734.1| Exonuclease III [Lactobacillus rhamnosus HN001]
gi|199591819|gb|EDY99894.1| Exonuclease III [Lactobacillus rhamnosus HN001]
Length = 253
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 130/307 (42%), Gaps = 68/307 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
LK ++WN N L +K +F D D LQE +M A + D P +Q
Sbjct: 2 LKMISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYYQ----- 53
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----E 155
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 54 -------------------------YFNYAERKGYSGTAIFTKH--KPLNVTYGMGIPEH 86
Query: 156 KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 214
T+GR+I E+ FYL+ Y PN+G E R++WD+ + + + K PL++CG
Sbjct: 87 DTEGRIITLEYTKFYLMTVYTPNSG--GELKRLDYRQQWDRDFLAYTNELAAKKPLVYCG 144
Query: 215 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 274
DLNV+HE ID+ + +K + GFT ER F L G ID +R
Sbjct: 145 DLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLNSG-FIDTFR 188
Query: 275 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D WS + + RIDYF+ S + I ++ L GS
Sbjct: 189 --HFYPDTVTYSWWSYHFHARANNAGWRIDYFVASSAFQPYIQDAKI------LTQIMGS 240
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 241 DHCPVEL 247
>gi|169837263|ref|ZP_02870451.1| exonuclease III [candidate division TM7 single-cell isolate TM7a]
Length = 267
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 145/319 (45%), Gaps = 73/319 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ +WN N + +K F FI+ + PD++ LQE + A KN E+
Sbjct: 3 MRLYSWNVNGIRAVIKKG--TFLPFISEYQPDILCLQETK--------AKKNQVEI---- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVK---------------KCFQ 146
P + ++IW S + Y+GTA+ K K +
Sbjct: 49 --------------DLPDY--FEIWNSAERAGYSGTAIFSKAKPLNTWLDFPEDIVKKYN 92
Query: 147 PKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVLQC 205
+ + +GR+I AEF+ F + Y PN+ K + + Q R +KWDK E++ +
Sbjct: 93 LDQDDYGNPNNEGRIIAAEFDNFIVATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMKKL 150
Query: 206 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
S KP+++CGDLNV+H E D+++P+ PN G+ GFT ER F A +
Sbjct: 151 ESIKPVLFCGDLNVAHTEDDLANPK------------PNI---GKHGFTNEERAGFDAFI 195
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 324
+ G D +R K ++ N + R RIDY++ SE+L ++I E Q H
Sbjct: 196 QSG-FKDTFRIFTKGNGYYSWWTHWAN--ARARNIGWRIDYWLASEKLANKI--TEAQIH 250
Query: 325 GIELEGFYGSDHCPVSLEL 343
GSDHCPVS+ +
Sbjct: 251 ----PDIMGSDHCPVSVTI 265
>gi|403365259|gb|EJY82409.1| Exonuclease III [Oxytricha trifallax]
Length = 645
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 141/318 (44%), Gaps = 61/318 (19%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA---- 121
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
+ + K+Y+ +W+ + SK Y+GT L+ K +P KV+F
Sbjct: 122 -------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTF 160
Query: 153 SL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--- 205
+ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++ +
Sbjct: 161 DIGIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIE 219
Query: 206 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
+ KPLI GDLNV+ E+DV + K+ Y P ERK F + +
Sbjct: 220 TNKPLILTGDLNVARNELDVFDTK--GKDKVACYTP-------------EERKSFESFIN 264
Query: 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325
G ID +R L+ +K FS N K K RIDYF+V ++ D + ++ H
Sbjct: 265 RG-YIDTFRHLYPDKREYTYFSARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH- 318
Query: 326 IELEGFYGSDHCPVSLEL 343
+ + GSDH PV L L
Sbjct: 319 ---KDYNGSDHVPVCLHL 333
>gi|291536334|emb|CBL09446.1| exodeoxyribonuclease III [Roseburia intestinalis M50/1]
Length = 246
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 33/231 (14%)
Query: 119 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLN 173
P Y +W+ A K Y+GTA+ KK +P V++ + +GRVI E+ FY++
Sbjct: 40 PLPGYFSYWNYAKKKGYSGTAIFTKK--EPLNVTYGIGIEEHDKEGRVITLEYPDFYMVT 97
Query: 174 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFA 232
Y PN+ + E R +W+ + ++ + G KP+I CGDLNV+HEEID+ +P
Sbjct: 98 CYTPNS--QNELARLPYRMQWEDDFRAYLKRLDGSKPVILCGDLNVAHEEIDLKNP---- 151
Query: 233 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 292
K + GF+ ER++ +L G D +R+ + + + + WS
Sbjct: 152 -----------KTNRKNAGFSDEEREKMTKLLDAG-FTDTFRYFYPDTEQIYSW-WSYRF 198
Query: 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
+ + RIDYFI S+ + D++ ++ +GSDHCPV L++
Sbjct: 199 RAREKNAGWRIDYFITSKRMNDKLTGAKIH------TDVFGSDHCPVELDI 243
>gi|450078845|ref|ZP_21851157.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
gi|449209706|gb|EMC10214.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
Length = 275
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 139/320 (43%), Gaps = 65/320 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPK--- 148
+ D F +Y + W A YAGT L K QP
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPTITY 99
Query: 149 -KVSFSLEKTD-GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 206
K+ D GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 100 PKIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLD 157
Query: 207 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 265
KP++ GD NV+H+EID++HP N+ PGFT ER F +L+
Sbjct: 158 KQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLE 202
Query: 266 EGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 323
+G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 203 QG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMID 259
Query: 324 HGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 260 SGTR------QDHTPILLKI 273
>gi|379726888|ref|YP_005319073.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
gi|376317791|dbj|BAL61578.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
Length = 254
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 136/306 (44%), Gaps = 61/306 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D +QE ++ Q+ + D
Sbjct: 1 MKCISWNVNGLRAIVKKN---FIDVFNELDADFFCVQETKL------------QDGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
L P + Y W A K Y+G A+ KK Q ++E+ D
Sbjct: 45 -------------LELPGYHQY---WDYAIKKGYSGVAVFAKKAAQKVYYGLNMEEHDQE 88
Query: 159 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLN 217
GR++ E+ FYL+N Y PN+ + E R W+ ++++++ S KP+I CGDLN
Sbjct: 89 GRLLTLEYPNFYLVNCYTPNS--QPELKRLAYRMTWENAFRDYLIKLKSKKPVILCGDLN 146
Query: 218 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277
V+H+ ID+ + + + GF+ ER++ +L G ID YR+ +
Sbjct: 147 VAHQPIDLKNW---------------RTNQHSAGFSPEEREKMTQLLDNG-FIDTYRYFY 190
Query: 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 337
+K+ + WS + RIDYFIVS+ LK + + GSDHC
Sbjct: 191 PDKEGVYSW-WSYRFNARKNNAGWRIDYFIVSDNLKPTLKEATIYTE------ITGSDHC 243
Query: 338 PVSLEL 343
PV +EL
Sbjct: 244 PVGVEL 249
>gi|291545257|emb|CBL18366.1| exodeoxyribonuclease III [Ruminococcus champanellensis 18P13]
Length = 256
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 131/306 (42%), Gaps = 65/306 (21%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K ++WN N L R K F F D D +QE ++ A +
Sbjct: 1 MKLISWNVNGLRACREKG----FEAFFAQEDADFFCIQETKLQAGQIQ------------ 44
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL--EKT 157
L P + Y W AD K Y+GTA+ K + F L
Sbjct: 45 --------------LELPGYNQY---WHYADKKGYSGTAVFTKHIPLSVQRDFGLPAHNG 87
Query: 158 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
+GRV+ E+ FYL+N Y PN+ K E R +W+ +++++L KP+I+CGDL
Sbjct: 88 EGRVLTLEYPDFYLVNAYVPNS--KRELLRLDYRMEWEDALRQYLLGLDARKPVIYCGDL 145
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NV+H EID+ +P K + GFT ER R +L G D +R L
Sbjct: 146 NVAHREIDLKNP---------------KSNRRNAGFTDEERGRLSTLLDSG-FTDTFRLL 189
Query: 277 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
+ D ++ WS + + RIDYFIVS IA +Q I + GSD
Sbjct: 190 Y--PDTAGAYTWWSYMFHAREKNAGWRIDYFIVSNR-----IAPLVQDSLI-YKDVLGSD 241
Query: 336 HCPVSL 341
HCPV L
Sbjct: 242 HCPVGL 247
>gi|395333468|gb|EJF65845.1| hypothetical protein DICSQDRAFT_77688 [Dichomitus squalens LYAD-421
SS1]
Length = 280
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 42/235 (17%)
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSL------EKTDGRVILAEFETFYLLNTYAPN 178
+W+++D K Y+GTA+L K +P V + L GR++ EFE+ Y++ TY N
Sbjct: 69 YWAISDKKTYSGTAILSK--IEPLSVKYDLPGHPDKSAVKGRIVTLEFESCYVIGTYVTN 126
Query: 179 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 237
G + +++W+K + ++ + K P+IW GDLNV+ +D+++P
Sbjct: 127 AG--TGLKTLDAKKEWNKHFEVYIRELDKKKPVIWTGDLNVAPTALDLANP--------- 175
Query: 238 GYVPPNKEDWGQ-PGFTIAERKRFGAILKEG-------RLIDAYRFLHKEKDMDCGFSWS 289
K +W + PG+T AE F +L E + +D +R H + FS+
Sbjct: 176 ------KTNWNKTPGYTEAETSAFARVLNEDGAEPDAPKFVDVWRKRHPDLRHYTYFSYR 229
Query: 290 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
N + +G R+D F+VSE L++++ CE++ E + SDHCPV LEL+
Sbjct: 230 FN--CREKGLGWRLDMFVVSERLEEKVQMCEIRS-----EIYGASDHCPVVLELA 277
>gi|116618622|ref|YP_818993.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|116097469|gb|ABJ62620.1| Exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 272
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 148/325 (45%), Gaps = 76/325 (23%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN 93
+KF++WN +S+ +R + W N I T PDV A+QE ++ + G +K
Sbjct: 1 MKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGLTKKQATA 59
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVS 151
EL F Y ++ S A S Y+GT +L K +P +V
Sbjct: 60 IAEL----------------------FPEYHLYVNSSTARSGYSGTMVLSK--VEPTQVE 95
Query: 152 FSL------EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 202
+ +GR+I EF TF+L Y PN+G +S R R +WD + +E++
Sbjct: 96 YPTIGAPGSMDLEGRIITLEFPTFFLSTVYTPNSG-----SSLIRLPERGEWDDKYREYI 150
Query: 203 LQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 261
+ KP+I+ GD+NV+H+EID+ +P+ PN+ GFT ER++F
Sbjct: 151 KTLDATKPVIFSGDMNVAHQEIDLKNPK------------PNRH---SAGFTDQEREKFS 195
Query: 262 AILKEGRLIDAYRFLHKEKDMDCGFSWSG--NPIGKYRGKRMRIDYFIVSEELKDRIIAC 319
A+L G D +R L+ D ++W + K RIDY++VS+ + + +
Sbjct: 196 ALLDAG-FTDTFRSLN--PDTPSVYTWWAQISKTSKINNSGWRIDYYLVSDRIAENVTES 252
Query: 320 EMQGHGIELEGFYGSDHCPVSLELS 344
+ G DH P+ LE++
Sbjct: 253 CVIDTGAR------QDHAPILLEIN 271
>gi|387785665|ref|YP_006250761.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
gi|379132066|dbj|BAL68818.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
Length = 297
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 23 MKLISWNIDSLNAALTSDSTRALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 79
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 80 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 120
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 121 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 178
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 179 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 223
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 224 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 280
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 281 DSGTR------QDHTPILLKI 295
>gi|450049676|ref|ZP_21839797.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
gi|449203427|gb|EMC04286.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
Length = 275
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DALKRLDDRQIWDEKYAIYLAQL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 137/312 (43%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGIRACVKKG---FMDYFNDMDADIFCIQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT---- 157
L +P + YQ W Y+GTA+ K +P +V + L++
Sbjct: 45 -------------LDTPGY--YQYWNYAIKKGYSGTAVFTK--MKPLQVRYGLDEKKAEE 87
Query: 158 ---DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 213
+GR++ E+E F+L+N Y PN+ + + R W+ R ++ + K +I C
Sbjct: 88 CEPEGRILTLEYEDFFLVNVYTPNS--QRDLARLPFRLDWEDRFLAYIKMLDQQKSVIVC 145
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GDLNV+H EID+ +P K + GFT ER + +L EG D +
Sbjct: 146 GDLNVAHAEIDLKNP---------------KSNRNNSGFTEEERGKMTRLLGEG-FSDTF 189
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R + E D WS + R RIDYFIVS+ LK + E+ G
Sbjct: 190 RHFYPEL-TDKYTWWSYMNKVRERNIGWRIDYFIVSDNLKGSLKDAEIHSD------IMG 242
Query: 334 SDHCPVSLELSE 345
SDHCPV L L++
Sbjct: 243 SDHCPVVLILNK 254
>gi|450046094|ref|ZP_21838754.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
gi|449199268|gb|EMC00342.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
Length = 275
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 67/321 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 F------SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 205
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYVIYLAQL 156
Query: 206 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 264
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 265 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 323 GHGIELEGFYGSDHCPVSLEL 343
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 64/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + + ++ + D++ LQE ++ P+
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETEADILCLQETKVQDGQVSLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
Y +W+ A K Y+GTA+ K+ +P V + L D
Sbjct: 51 ---------------------YHAYWNYAVKKGYSGTAVFSKE--KPLHVFYGLGIDDHD 87
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 215
GRVI EFE +++N Y PN K R +W+ ++++ + KP+I CGD
Sbjct: 88 QEGRVITLEFENVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER+ F A+L G D++R+
Sbjct: 146 LNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNAG-FTDSFRY 189
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 335
L+ +++ + WS + + R+DY IVS+ LK RI + GSD
Sbjct: 190 LYPDREGAYSW-WSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAI------CADIMGSD 242
Query: 336 HCPVSLEL 343
HCPV + +
Sbjct: 243 HCPVEMTV 250
>gi|313122838|ref|YP_004033097.1| exonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312279401|gb|ADQ60120.1| Exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 265
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 125/289 (43%), Gaps = 65/289 (22%)
Query: 70 FDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL 129
DPDV+ALQE ++PA+G K HQ D F Y W
Sbjct: 25 LDPDVLALQETKLPASGPS---KKHQAALADL------------------FPEYDFVWRS 63
Query: 130 ----ADSKYAGTALLVKKCFQPKKVSFSL---EKTD--GRVILAEFETFYLLNTYAPNNG 180
A YAGT L KK P + E D GR++ EF FY+ Y PN G
Sbjct: 64 SMEPARKGYAGTMFLYKKGLDPVVTRPEIGAPEPMDFEGRILTLEFPDFYVTQVYTPNAG 123
Query: 181 WKEEENSFQR---RRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKL 236
N R R++WDK + ++ + K P++ GD N +++EID+ HPE
Sbjct: 124 -----NGLVRLGDRQEWDKCYRAYLEELDKKKPVLASGDFNAAYQEIDLKHPE------- 171
Query: 237 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--G 294
+ GFT ER FG +L G D +R +H + ++ +SW +
Sbjct: 172 --------NNHHSAGFTDEERAGFGQLLAAG-FTDTFRQIHGQ--VEGVYSWWAQRVRTA 220
Query: 295 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
K RIDY++VS L D++ EM +E +DHCP+ LE+
Sbjct: 221 KANNSGWRIDYWLVSNRLADQVEKSEM------IETGERADHCPILLEI 263
>gi|296880312|ref|ZP_06904277.1| exodeoxyribonuclease III, partial [Clostridium difficile NAP07]
gi|296428755|gb|EFH14637.1| exodeoxyribonuclease III [Clostridium difficile NAP07]
Length = 181
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 30/203 (14%)
Query: 146 QPKKVSF--SLEKTD--GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 201
+P KV + ++E+ D GRVI EFE FY + Y PN+ + E + R +W+ ++
Sbjct: 3 EPLKVMYGINIEEHDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDY 60
Query: 202 VLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 260
+ + KP+I CGD+NV+H+EID+ +P K + GFT ER++F
Sbjct: 61 LTKLDNHKPVIVCGDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKF 105
Query: 261 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 320
+L G ID YR+ + +K+ + WS + RIDYF S++L+DR+I+ +
Sbjct: 106 SKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLISAD 163
Query: 321 MQGHGIELEGFYGSDHCPVSLEL 343
+ + GSDHCPV LE+
Sbjct: 164 IHTEVL------GSDHCPVELEI 180
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 145/313 (46%), Gaps = 69/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L ++ F +F+ D+ +QE +M
Sbjct: 52 MRLVSWNVNGLRACMQKG---FCDFLEQSQADIFCVQETKM------------------- 89
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
++E+ +S F+ Y+++W+ A K Y+G L K P +VS+ +
Sbjct: 90 ---QQEQ-------ASFCFEGYEVFWNSAQKKGYSGVLTLSK--IAPLQVSYGIGIAEHD 137
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 215
T+GRVI E+ FYL+N Y PN + R +W++ + F+ K ++ CGD
Sbjct: 138 TEGRVITCEYPNFYLVNVYTPNA--QRGLLRLPYRLEWERSFRGFLQNLMQKKAVVVCGD 195
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+++P+ N+ + GF+ ER F +L G LID +R
Sbjct: 196 LNVAHNEIDLTNPQ------------SNRYN---AGFSDPERDAFRQLLNLG-LIDTFRH 239
Query: 276 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
+ K ++W + I + R K + RIDYF+ S+ L + + + H + G
Sbjct: 240 FYPTKAE--SYTW-WSYINQARAKNIGWRIDYFLTSQTLNSCLQSAYIYNHIL------G 290
Query: 334 SDHCPVSLELSEA 346
SDHCPV L+L E
Sbjct: 291 SDHCPVGLDLHET 303
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 136/309 (44%), Gaps = 66/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + + + D++ LQE ++ P+ + +
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTCLQETKADILCLQETKVQDGQVSLQPEGYHD----- 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTD-- 158
+W+ A K Y+GTA+ K +P +VS+ L D
Sbjct: 54 ------------------------YWNYAVKKGYSGTAVFSK--VKPLQVSYGLGIDDHD 87
Query: 159 --GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
GRVI EFE +++N Y PN K R +W+ ++++ + K P+I CGD
Sbjct: 88 QEGRVITLEFENVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDQKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H EID+ +P K + GF+ ER+ F +L G D++R+
Sbjct: 146 LNVAHREIDLKNP---------------KANRKNAGFSDQEREAFSVLLNAG-FTDSFRY 189
Query: 276 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
L+ D + +S WS + + R+DY IVS+ LK RI + GS
Sbjct: 190 LY--PDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRITQAAI------CADIMGS 241
Query: 335 DHCPVSLEL 343
DHCPV + L
Sbjct: 242 DHCPVEMTL 250
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,006,670,050
Number of Sequences: 23463169
Number of extensions: 262729995
Number of successful extensions: 622186
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 3406
Number of HSP's that attempted gapping in prelim test: 612658
Number of HSP's gapped (non-prelim): 5235
length of query: 360
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 217
effective length of database: 9,003,962,200
effective search space: 1953859797400
effective search space used: 1953859797400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)