BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018111
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 163/345 (47%), Gaps = 64/345 (18%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNG 180
W + +D + Y+G LL ++C P KVS+ + +GRVI+AEFE+F L+ Y PN G
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAG 175
Query: 181 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 239
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 --RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG--------- 224
Query: 240 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 299
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 ---NKKN---AGFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNV 277
Query: 300 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 278 GWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 163/345 (47%), Gaps = 64/345 (18%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNG 180
W + +D + Y+G LL ++C P KVS+ + +GRVI+AEFE+F L+ Y PN G
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAG 175
Query: 181 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 239
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 --RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG--------- 224
Query: 240 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 299
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 ---NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNV 277
Query: 300 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 278 GWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes
GN=APEX1 PE=3 SV=1
Length = 318
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus
GN=APEX1 PE=3 SV=1
Length = 318
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLTALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------------ 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla
gorilla GN=APEX1 PE=3 SV=1
Length = 318
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 162/343 (47%), Gaps = 66/343 (19%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +YQ +WS
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSYQ-YWS 120
Query: 129 LADSK--YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWK 182
K Y+G LL ++C P KVS+ + +GRVI+AEF++F L+ Y PN G
Sbjct: 121 APXXKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAG-- 176
Query: 183 EEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 241
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG----------- 225
Query: 242 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 301
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 -NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGW 280
Query: 302 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 281 RLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 146/314 (46%), Gaps = 60/314 (19%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E +++ +K ++WN + F+ ++ +PDV+ LQE ++ N
Sbjct: 97 EPKVEENQMKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKI----------N 143
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+K D K Y+ + AD K + GT +L KK +P ++F
Sbjct: 144 PSNIKKDQMP-----------------KGYEYHFIEADQKGHHGTGVLTKK--KPNAITF 184
Query: 153 SL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG- 207
+ +GRVI E++ FY++NTY PN G + + R ++WD Q ++ + +
Sbjct: 185 GIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNAT 244
Query: 208 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 267
KP+IWCGDLNV+H EID+ +P K + GFTI ER F L++G
Sbjct: 245 KPIIWCGDLNVAHTEIDLKNP---------------KTNKKSAGFTIEERTSFSNFLEKG 289
Query: 268 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
+D+YR + K+ F WS G+ + R+DYF+VS+ L D I +
Sbjct: 290 -YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV- 346
Query: 328 LEGFYGSDHCPVSL 341
GSDHCP+ +
Sbjct: 347 ----MGSDHCPIGV 356
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1
PE=1 SV=2
Length = 318
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 64/342 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSG---LSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKE 183
+D + Y+G LL ++C P KVS+ + +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG--R 177
Query: 184 EENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 242
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------G 225
Query: 243 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 302
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + + R
Sbjct: 226 NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWR 281
Query: 303 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
+DYF++S+ + + +++ + GSDHCP++L L+
Sbjct: 282 LDYFLLSQSVLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 66/307 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P++
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPED-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL----EK 156
Y ++W+ A K Y+GTA+ K+ +P +V + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGIGVEEHD 87
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 215
+GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I CGD
Sbjct: 88 QEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGD 145
Query: 216 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275
LNV+H+EID+ +P K + GF+ ER+ F L+ G +D++R
Sbjct: 146 LNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR- 188
Query: 276 LHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
H D++ +SW G + R RIDYF+VSE LK++I + + GS
Sbjct: 189 -HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GS 241
Query: 335 DHCPVSL 341
DHCPV L
Sbjct: 242 DHCPVEL 248
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 71/316 (22%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 326
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF- 152
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 327 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 363
Query: 153 ---SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 208
S T+GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + + K
Sbjct: 364 TGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSK 422
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P++ GDLN +HEEID+ +P NK GFTI ER+ FGA L +
Sbjct: 423 PVVLTGDLNCAHEEIDIFNP------------AGNKRS---AGFTIEERQSFGANLLDKG 467
Query: 269 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 327
+D +R K+ G++ W G+ K R+DYF+VS+ IA + I
Sbjct: 468 FVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI- 518
Query: 328 LEGFYGSDHCPVSLEL 343
L GSDHCP+ L L
Sbjct: 519 LPDINGSDHCPIGLIL 534
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 133/305 (43%), Gaps = 61/305 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 474
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTD--- 158
+ Y +W YAG A+ K P V + + +
Sbjct: 475 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNEEFDD 515
Query: 159 -GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 216
GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CGD+
Sbjct: 516 VGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDM 573
Query: 217 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 276
NVSH ID+ +P K + GFT ER + +L G +D +R L
Sbjct: 574 NVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHL 617
Query: 277 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 336
+ ++ F W+ + R R+DY +VSE +++ E++ + GSDH
Sbjct: 618 YPDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDH 670
Query: 337 CPVSL 341
CP+++
Sbjct: 671 CPITI 675
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 146/322 (45%), Gaps = 62/322 (19%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKD 89
E + ++ + +K +WN + L VK N +++ DPD++ LQE
Sbjct: 43 EKLTSKDGRAANMKITSWNVDGLRAWVKKN---GLDWVRKEDPDILCLQE---------- 89
Query: 90 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQP 147
TK + + + + P K +W+ ++ K Y+G A+L K +P
Sbjct: 90 -----------TKCAEKALPADITGMPEYPHK----YWAGSEDKEGYSGVAMLCKT--EP 132
Query: 148 KKVSFSLEK----TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 203
V++ + K +GRVI AEF F+L+ Y PN R+ WD + ++
Sbjct: 133 LNVTYGIGKEEHDKEGRVITAEFPDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAYLC 190
Query: 204 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 262
KPL+ CGDLNV+H+EID+ +P K + GFT ER+ F
Sbjct: 191 GLDARKPLVLCGDLNVAHQEIDLKNP---------------KGNRKNAGFTPEEREGFTQ 235
Query: 263 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 322
+L+ G D++R L+ ++ F W+ + + R+DYF++S L + +++
Sbjct: 236 LLEAG-FTDSFRELYPDQAYAYTF-WTYMMNARSKNVGWRLDYFVLSSALLPGLCDSKIR 293
Query: 323 GHGIELEGFYGSDHCPVSLELS 344
+ GSDHCP++L L+
Sbjct: 294 NTAM------GSDHCPITLFLA 309
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 59/317 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHV 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF--- 152
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EILEELFPGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPT-ISFPEI 102
Query: 153 ---SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 208
S +GR+I EF+ F++ Y PN G + + R+ WD + E++ + K
Sbjct: 103 GAPSTMDLEGRIITLEFDAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAELDKEK 160
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P++ GD NV+H EID+++P N+ PGFT ER F +L G
Sbjct: 161 PVLATGDYNVAHNEIDLANP------------ASNRR---SPGFTDEERAGFTNLLATG- 204
Query: 269 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 326
D +R +H D+ ++W + K RIDY++ S + D++ +M G
Sbjct: 205 FTDTFRHVH--GDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGA 262
Query: 327 ELEGFYGSDHCPVSLEL 343
DH P+ LE+
Sbjct: 263 R------QDHTPIVLEI 273
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 59/317 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHV 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF--- 152
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EILEELFPGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPT-ISFPEI 102
Query: 153 ---SLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 208
S +GR+I EF+ F++ Y PN G + + R+ WD + E++ + K
Sbjct: 103 GAPSTMDLEGRIITLEFDAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAELDKEK 160
Query: 209 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 268
P++ GD NV+H EID+++P N+ PGFT ER F +L G
Sbjct: 161 PVLATGDYNVAHNEIDLANP------------ASNRR---SPGFTDEERAGFTNLLATG- 204
Query: 269 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 326
D +R +H D+ ++W + K RIDY++ S + D++ +M G
Sbjct: 205 FTDTFRHVH--GDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGA 262
Query: 327 ELEGFYGSDHCPVSLEL 343
DH P+ LE+
Sbjct: 263 R------QDHTPIVLEI 273
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 62/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF+++N N L R + I + PDVI LQE+++
Sbjct: 1 MKFISFNINGLRARPH----QLEAIIEKYQPDVIGLQEIKV------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDG-- 159
A + L F + Q + G ALL K+ + + F + D
Sbjct: 38 -ADEAFPYEITENLGYHVFHHGQ-------KGHYGVALLTKQEPKVIRRGFPTDNEDAQK 89
Query: 160 RVILAEFETFY----LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK--PLIWC 213
R+I+A+ ET + ++N Y P + E F + K+ +Q+++ + K P++
Sbjct: 90 RIIMADLETEFGLLTVINGYFPQGESRAHETKFPAKEKFYADLQQYLEKEHDKSNPILIM 149
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLI 270
GD+N+S ++D+ G N++ W G+ F ER + + G L
Sbjct: 150 GDMNISPSDLDI------------GIGDENRKRWLRTGKCSFLPEERAWYQRLYDYG-LE 196
Query: 271 DAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 329
D++R L+ D F + RG +RID+ +VS++L +R C G +++
Sbjct: 197 DSFRKLNPTANDKFSWFDYRSKGFDDNRG--LRIDHILVSQKLAER---CVDVGIALDIR 251
Query: 330 GFYG-SDHCPV 339
SDH P+
Sbjct: 252 AMEKPSDHAPI 262
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 125/312 (40%), Gaps = 64/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV++N N L R + + PDVI LQE ++ H E
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKV-----------HDE----- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF--SLEKTDG 159
M L Y +++ Y G ALL K + F E+
Sbjct: 41 ----------MFPLEEVAKLGYNVFYHGQKGHY-GVALLTKATPISVRRGFPDDGEEAQR 89
Query: 160 RVILAEFET----FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCSGKPLIW 212
R+I+AE + ++N Y P ++ F + ++ + +Q ++ L+C P++
Sbjct: 90 RIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCD-NPVLI 148
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRL 269
GD+N+S ++D+ G N++ W G+ F ER+ +LK G L
Sbjct: 149 MGDMNISPTDLDI------------GIGEENRKRWLRTGKCSFLPEEREWMSRLLKWG-L 195
Query: 270 IDAYRFLHKEKDMDCGFSW-SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 328
+D +R + + MD FSW G + +RID + S L +R C G ++
Sbjct: 196 VDTFRQANPQT-MD-KFSWFDYRSKGFVDNRGLRIDLLLASAPLAER---CAETGIDYDI 250
Query: 329 EGF-YGSDHCPV 339
SDH PV
Sbjct: 251 RSMEKPSDHAPV 262
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 125/312 (40%), Gaps = 64/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV++N N L R + + PDVI LQE ++ H E
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKV-----------HDE----- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF--SLEKTDG 159
M L Y +++ Y G ALL K + F E+
Sbjct: 41 ----------MFPLEEVAKLGYNVFYHGQKGHY-GVALLTKATPISVRRGFPDDGEEAQR 89
Query: 160 RVILAEFET----FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCSGKPLIW 212
R+I+AE + ++N Y P ++ F + ++ + +Q ++ L+C P++
Sbjct: 90 RIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCD-NPVLI 148
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRL 269
GD+N+S ++D+ G N++ W G+ F ER+ +LK G L
Sbjct: 149 MGDMNISPTDLDI------------GIGEENRKRWLRTGKCSFLPEEREWMSRLLKWG-L 195
Query: 270 IDAYRFLHKEKDMDCGFSW-SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 328
+D +R + + MD FSW G + +RID + S L +R C G ++
Sbjct: 196 VDTFRQANPQT-MD-KFSWFDYRSKGFVDNRGLRIDLLLASAPLAER---CAETGIDYDI 250
Query: 329 EGF-YGSDHCPV 339
SDH PV
Sbjct: 251 RSMEKPSDHAPV 262
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus
GN=Apex2 PE=1 SV=1
Length = 516
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 46/209 (22%)
Query: 157 TDGRVILAEFE---------TFYLLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCS 206
++GR +L + + T L+N Y P+ + K E +F+ R +++ L +
Sbjct: 128 SEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLAA 187
Query: 207 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 266
G +I GDLN +H ID A+ L + +ED G RK +L
Sbjct: 188 GSHVIILGDLNTAHRPID-----HCDASSLECF----EEDPG--------RKWMDGLLSN 230
Query: 267 ---------GRLIDAYRFLH--KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 315
G +D+YR+LH +++ C WS ++ R+DY L DR
Sbjct: 231 PGDEAGPHIGLFMDSYRYLHPKQQRAFTC---WSVVSGARHLNYGSRLDYV-----LGDR 282
Query: 316 IIACEMQGHGIELEGFYGSDHCPVSLELS 344
+ + L GSDHCPV L+
Sbjct: 283 ALVIDTFQASFLLPEVMGSDHCPVGAVLN 311
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens
GN=APEX2 PE=1 SV=1
Length = 518
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 128/368 (34%), Gaps = 106/368 (28%)
Query: 42 LKFVTWNANSL---LLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
L+ V+WN N + L V N P + D D++ LQE ++
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKV---------- 51
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS- 151
T+ + E L ++ N +S S Y+G A K P
Sbjct: 52 --------TRDALTEPLAIVEGY------NSYFSFSRNRSGYSGVATFCKDNATPVAAEE 97
Query: 152 -----FSLEKTD---------------------GRVILAEFE---------TFYLLNTYA 176
F+ + D GR +L + + T L+N Y
Sbjct: 98 GLSGLFATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYC 157
Query: 177 PN-NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 235
P+ + + E F+ R +I+ L +G +I GDLN +H ID + A
Sbjct: 158 PHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPID-----HWDAVN 212
Query: 236 LNGYVPPNKEDWGQPGFTIAERKRFGAILKE---------GRLIDAYRFLH--KEKDMDC 284
L + +ED G RK ++L G ID+YR +E C
Sbjct: 213 LECF----EEDPG--------RKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTC 260
Query: 285 GFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
WS ++ R+DY L DR + + L GSDHCPV LS
Sbjct: 261 ---WSAVTGARHLNYGSRLDYV-----LGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLS 312
Query: 345 EASSDSEK 352
+S +++
Sbjct: 313 VSSVPAKQ 320
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 129/363 (35%), Gaps = 106/363 (29%)
Query: 42 LKFVTWNANSL---LLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
L+ V+WN N + L V+ P + D D++ LQE
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQE------------- 48
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV-- 150
TK +R+ +L L+ N +S S Y+G A K P
Sbjct: 49 --------TKVTRD---VLTEPLAIIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEE 97
Query: 151 --------------------SFSLEK-----TDGRVILAEFE---------TFYLLNTYA 176
F+ E+ ++GR +L + + T L+N Y
Sbjct: 98 GLSGLLSTQNGDVGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYC 157
Query: 177 PN-NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 235
P+ + K E +F+ R +I+ L +G +I GDLN +H ID + A
Sbjct: 158 PHADPGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPID-----HWDAVN 212
Query: 236 LNGYVPPNKEDWGQPGFTIAERKRFGAILKE---------GRLIDAYR-FLHKEKD-MDC 284
+ + +ED G RK +L G ID+YR F K+K C
Sbjct: 213 MECF----EEDPG--------RKWMDGLLSNLGCESGSHMGPFIDSYRCFQPKQKGAFTC 260
Query: 285 GFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344
WS ++ R+DY L DR + + L GSDHCPV LS
Sbjct: 261 ---WSTVSGARHLNYGSRLDYV-----LGDRTLVIDTFQSSFLLPEVMGSDHCPVGAVLS 312
Query: 345 EAS 347
+S
Sbjct: 313 VSS 315
>sp|P09030|EX3_ECOLI Exodeoxyribonuclease III OS=Escherichia coli (strain K12) GN=xthA
PE=1 SV=4
Length = 268
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 121/312 (38%), Gaps = 64/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV++N N L R + + PDVI LQE + + DD
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETK---------------VHDD- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF--SLEKTDG 159
M L Y +++ Y G ALL K+ + F E+
Sbjct: 41 ----------MFPLEEVAKLGYNVFYHGQKGHY-GVALLTKETPIAVRRGFPGDDEEAQR 89
Query: 160 RVILAEFETFY----LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK---PLIW 212
R+I+AE + ++N Y P ++ F + ++ + +Q + L+ K P++
Sbjct: 90 RIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNY-LETELKRDNPVLI 148
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRL 269
GD+N+S ++D+ G N++ W G+ F ER+ ++ G L
Sbjct: 149 MGDMNISPTDLDI------------GIGEENRKRWLRTGKCSFLPEEREWMDRLMSWG-L 195
Query: 270 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIEL 328
+D +R H FSW + R +RID + S+ L + C G E+
Sbjct: 196 VDTFR--HANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAE---CCVETGIDYEI 250
Query: 329 EGFYG-SDHCPV 339
SDH PV
Sbjct: 251 RSMEKPSDHAPV 262
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 43/215 (20%)
Query: 157 TDGRVILAEFET-FYLLNTYAPNNGWKEEENSFQRRRKWD---KRIQEFVLQCSGKPLIW 212
++GR ++ E +++ Y P N EE R R +R++ L GK ++
Sbjct: 162 SEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRN--LDKIGKKIVL 219
Query: 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP-----------GFTI----AER 257
GD+NV + ID +A L + P + G F I R
Sbjct: 220 MGDVNVCRDLID-------SADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTPHR 272
Query: 258 KRFGAIL---------KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIV 308
+ F IL K G LID R + + W+ + RID+ +V
Sbjct: 273 RIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFILV 332
Query: 309 SEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 343
S +L+ I A ++ L GSDHCPV +L
Sbjct: 333 SLKLERCIKAADI------LPDILGSDHCPVYSDL 361
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 157 TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCSGKPLIWC 213
++GR IL +F+ F L+ Y P N EN + RR + K ++E + ++ + +I
Sbjct: 133 SEGRCILLDFQMFILIGVYCPVNS---GENRLEYRRAFYKALRERIERLIKEGNRKIILV 189
Query: 214 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273
GD+N+ ID + + L + +++ W + + I GR+
Sbjct: 190 GDVNILCNPIDTADQKDIIRESLIPSIMESRQ-WIRDLLLPSRLGLLLDI---GRIQHPT 245
Query: 274 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 333
R + C W+ + RIDY + + +L + ++ + G
Sbjct: 246 R----KGMFTC---WNTRLNTRPTNYGTRIDYTLATPDLLPWVQDADIMAEVM------G 292
Query: 334 SDHCPVSLELSE 345
SDHCPV L+L E
Sbjct: 293 SDHCPVYLDLKE 304
>sp|A6NJ88|SGE1L_HUMAN Putative SAGE1-like protein OS=Homo sapiens PE=5 SV=4
Length = 616
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
+ T N N +R++NN P+F+N ++T P I + +PA +KDA N
Sbjct: 209 YATINHNVYEVRMENNQPQFNNVLSTVKPGHINMAAAGIPAMSAKDAVVN 258
>sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2
Length = 911
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 281 DMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 334
D++C +SW +P+ +R + +D + V +L RI A + +EL F+G+
Sbjct: 798 DLECRYSWDHSPLSMFRHYTIYLDLYAVINDLSSRIEATRLGITALELR-FHGA 850
>sp|Q5SSE9|ABCAD_MOUSE ATP-binding cassette sub-family A member 13 OS=Mus musculus GN=Abca13
PE=2 SV=1
Length = 5034
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 239 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 294
++P N DW Q G T+ GA+L E R++++ R + GFS IG
Sbjct: 4393 HLPANAVDWRQYGITLYSHPYGGALLNEDRILESIRQCGVALCIVLGFSILSASIG 4448
>sp|A7YWI9|TYDP2_BOVIN Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=TDP2 PE=2 SV=1
Length = 364
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 28 TTETSSEENSKKDPLKFVTWN-----ANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
T+E S + F+TWN N+LL R + +++T + PDVI LQEV
Sbjct: 102 TSEDKSVQQEDGSVFSFITWNIDGLDMNNLLERARG----VCSYLTLYSPDVIFLQEVIP 157
Query: 83 P 83
P
Sbjct: 158 P 158
>sp|Q5ZHV8|RMI1_CHICK RecQ-mediated genome instability protein 1 OS=Gallus gallus GN=RMI1
PE=2 SV=1
Length = 627
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 35/153 (22%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
KP+E K A + S DG +T S + NS V+ +S ++ +KN E N
Sbjct: 385 KPVEVTSKQKNLARTVSTGDGTSTGGSLQCNS-------VSQACSSAIVLLKNPHEERRN 437
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASR-----EEKLILMRA------ 114
PD + Q S+ AP + Q KD +S+ +++ IL R
Sbjct: 438 ---DLGPDESSCQ--------SRHAPDSRQLNKDPVSSSKTDPEADQQAILCRPGNACDL 486
Query: 115 -LSSPPFKNYQIWWSLADSKYAGTALLVK-KCF 145
L SPPF + SL +K T LVK KCF
Sbjct: 487 DLDSPPFT----YISLLLAKKPETITLVKVKCF 515
>sp|O95551|TYDP2_HUMAN Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1
Length = 362
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 25 DGETTETSSEENSKKD---PLKFVTWNANSLLLRVKNNWPE----FSNFITTFDPDVIAL 77
D T++ S E+++++ +TWN + L L NN E +++ + PDVI L
Sbjct: 94 DSTTSKISPSEDTQQENGSMFSLITWNIDGLDL---NNLSERARGVCSYLALYSPDVIFL 150
Query: 78 QEVRMP 83
QEV P
Sbjct: 151 QEVIPP 156
>sp|Q28FQ5|TYDP2_XENTR Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropicalis GN=tdp2 PE=2
SV=2
Length = 373
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 19 LSPSKKDGETTETSSEENSKKDPLKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIAL 77
L +K + T+ +S+ + + F+TWN + L V +++ + PDV+ L
Sbjct: 102 LVVTKSEATTSNSSTVKQEDESHFSFLTWNIDGLDESNVAERARGVCSYLALYSPDVVFL 161
Query: 78 QEVRMP 83
QEV P
Sbjct: 162 QEVIPP 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,894,363
Number of Sequences: 539616
Number of extensions: 6301409
Number of successful extensions: 15228
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 15153
Number of HSP's gapped (non-prelim): 42
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)