Query 018111
Match_columns 360
No_of_seqs 114 out of 1343
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:07:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 1.9E-36 6.4E-41 279.9 25.6 252 41-350 3-262 (265)
2 2j63_A AP-endonuclease; base e 100.0 7.4E-36 2.5E-40 297.4 27.7 258 39-345 147-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 4.5E-34 1.5E-38 261.6 26.3 250 41-345 1-257 (257)
4 2jc5_A Exodeoxyribonuclease; h 100.0 7.7E-34 2.6E-38 259.8 24.3 250 41-347 1-258 (259)
5 2jc4_A Exodeoxyribonuclease II 100.0 1.9E-33 6.6E-38 256.7 25.9 251 42-345 1-256 (256)
6 1hd7_A DNA-(apurinic or apyrim 100.0 1.4E-33 4.8E-38 268.2 23.6 252 37-345 57-318 (318)
7 2o3h_A DNA-(apurinic or apyrim 100.0 5.1E-33 1.7E-37 259.1 26.8 254 35-345 22-285 (285)
8 1ako_A Exonuclease III; AP-end 100.0 4.2E-32 1.4E-36 249.5 24.2 252 42-344 1-267 (268)
9 1vyb_A ORF2 contains A reverse 100.0 2.5E-32 8.7E-37 246.3 21.4 230 38-344 4-238 (238)
10 4gew_A 5'-tyrosyl-DNA phosphod 100.0 1.1E-29 3.9E-34 245.9 19.9 235 33-344 111-361 (362)
11 4fva_A 5'-tyrosyl-DNA phosphod 100.0 8E-29 2.7E-33 225.0 20.1 232 36-344 8-255 (256)
12 2ei9_A Non-LTR retrotransposon 100.0 4.1E-29 1.4E-33 228.7 16.6 215 40-348 6-222 (240)
13 1wdu_A TRAS1 ORF2P; four-layer 100.0 1.4E-27 4.9E-32 217.8 23.3 224 38-346 16-244 (245)
14 4f1h_A Tyrosyl-DNA phosphodies 99.9 3.1E-27 1.1E-31 211.7 17.3 233 40-344 2-249 (250)
15 4gz1_A Tyrosyl-DNA phosphodies 99.9 2E-27 6.8E-32 215.5 15.1 236 38-346 6-255 (256)
16 3teb_A Endonuclease/exonucleas 99.9 9.9E-27 3.4E-31 213.3 19.7 247 40-345 2-266 (266)
17 3g6s_A Putative endonuclease/e 99.9 8.7E-26 3E-30 208.1 18.6 233 40-350 2-265 (267)
18 3l1w_A Uncharacterized protein 99.9 1.2E-25 4.1E-30 205.8 18.8 224 42-347 1-253 (257)
19 3mpr_A Putative endonuclease/e 99.9 2.7E-24 9.2E-29 202.1 17.8 234 39-348 4-292 (298)
20 1zwx_A SMCL, sphingomyelinase- 99.9 4.5E-24 1.5E-28 199.8 17.3 162 36-222 5-202 (301)
21 2ddr_A Sphingomyelin phosphodi 99.9 1.4E-22 4.9E-27 189.8 18.4 163 38-222 6-202 (306)
22 3i41_A Beta-hemolysin; beta to 99.9 4.3E-22 1.5E-26 189.0 16.3 161 37-222 25-221 (317)
23 2f1n_A CDT B, cytolethal diste 99.8 1.3E-19 4.5E-24 164.0 12.7 163 38-223 12-193 (262)
24 3ngq_A CCR4-NOT transcription 99.8 1.3E-18 4.4E-23 169.7 18.9 155 39-223 29-261 (398)
25 1sr4_B CDT B, cytolethal diste 99.8 1.1E-18 3.6E-23 159.6 16.3 166 40-220 3-182 (261)
26 2a40_B Deoxyribonuclease-1; WA 99.8 9.3E-18 3.2E-22 154.3 19.3 151 42-221 1-174 (260)
27 4b8c_D Glucose-repressible alc 99.8 1.1E-19 3.6E-24 190.9 2.2 260 39-352 392-724 (727)
28 2imq_X Salivary nitrophorin; f 99.5 1.3E-14 4.4E-19 135.5 9.4 156 38-221 5-177 (282)
29 1i9z_A Synaptojanin, phosphati 99.5 1.1E-12 3.8E-17 125.5 17.1 160 40-220 25-212 (347)
30 2xsw_A 72 kDa inositol polypho 99.2 4.5E-11 1.5E-15 114.7 12.6 150 39-222 25-211 (357)
31 3mtc_A Type II inositol-1,4,5- 99.1 1.7E-09 5.9E-14 101.4 15.6 158 41-221 9-196 (313)
32 4a9c_A Phosphatidylinositol-3, 98.8 8.2E-08 2.8E-12 90.1 15.2 151 40-221 8-197 (316)
33 3p8k_A Hydrolase, carbon-nitro 29.1 29 0.001 30.9 2.7 25 61-85 40-67 (281)
34 3hkx_A Amidase; alpha-beta-BET 23.3 39 0.0013 30.1 2.4 24 61-84 40-66 (283)
35 3r8s_2 50S ribosomal protein L 21.5 27 0.00092 22.4 0.6 9 1-9 1-9 (46)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=1.9e-36 Score=279.86 Aligned_cols=252 Identities=28% Similarity=0.539 Sum_probs=195.1
Q ss_pred CeEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCC
Q 018111 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (360)
Q Consensus 41 ~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 120 (360)
.|||+||||+|++...++ .+.++|+..+|||||||||+.....+. . .+. ..
T Consensus 3 ~l~i~s~Nv~g~~~~~~~---~l~~~i~~~~~DIv~LQEt~~~~~~~~----------~--------------~~~--~~ 53 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHRK---GFLKWFMEEKPDILCLQEIKAAPEQLP----------R--------------KLR--HV 53 (265)
T ss_dssp EEEEEEEECSCHHHHHHH---THHHHHHHHCCSEEEEECCCSCGGGSC----------H--------------HHH--CC
T ss_pred ccEEEEEEcCCchhhhhh---hHHHHHHhcCCCEEEEEeccccccccC----------h--------------hhh--cc
Confidence 599999999999876642 599999999999999999987653221 0 011 11
Q ss_pred CCceEEEecC-CCCceeEEEEEeecCCCceeeccCC----CCcccEEEEEcCcEEEEEEEcCCCCCccchhhHHHHHHHH
Q 018111 121 KNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLE----KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 195 (360)
Q Consensus 121 ~gy~~~~~~~-~~~~~Gvailsr~pi~~~~v~~~~~----~~~~r~l~v~~~~l~v~nvh~~~~~~~~~~~~~~~r~~~l 195 (360)
.||..++... ..++.|+||++|.++ ..+...+. +..+|++.+++..+.|+|+|+|++..... ++..|.+|+
T Consensus 54 ~gy~~~~~~~~~~~~~Gvail~k~~~--~~~~~~~~~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~~~--~~~~r~~~~ 129 (265)
T 3g91_A 54 EGYRSFFTPAERKGYSGVAMYTKVPP--SSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGAMSEE--RLKYKLEFY 129 (265)
T ss_dssp TTCEEEEECBSSTTSCCEEEEESSCC--SEEECCCSCHHHHSBSCEEEEECSSCEEEEEECCCCTTCHH--HHHHHHHHH
T ss_pred cCCcEEEccCCCCCcCEEEEEEecCh--HHhccCCCCcccCCcCCEEEEEeCCEEEEEEEecCCCCCch--hHHHHHHHH
Confidence 6898766543 345779999999975 33433332 15789999999999999999999886533 556688889
Q ss_pred HHHHHHHHhc--CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeee
Q 018111 196 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273 (360)
Q Consensus 196 ~~l~~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~ 273 (360)
+.|..++... .+.++|||||||+.+.+.|..++.. +....++.+.++.++..++..+ |+|+|
T Consensus 130 ~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~g-l~D~~ 193 (265)
T 3g91_A 130 DAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKE---------------NSNVSGFLPVERAWIDKFIENG-YVDTF 193 (265)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGG---------------GTTSTTSCHHHHHHHHHHHHTT-EEETH
T ss_pred HHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhh---------------cCCCCccCHHHHHHHHHHHhcC-cEEee
Confidence 9998888654 3689999999999998877776542 2356788899999999999555 99999
Q ss_pred eccccCCCCCcceeccCCCCCcc-cCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeeecCCCch
Q 018111 274 RFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 350 (360)
Q Consensus 274 r~~~~~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~~~~~~~ 350 (360)
+..+|.. ..|||++.....+ .+.+.||||||+|+.+..++..+.+... ..+|||+||+++|.....++
T Consensus 194 r~~~p~~---~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~~~~~~~i~~~------~~~SDH~Pv~~~~~~~~~~~ 262 (265)
T 3g91_A 194 RMFNSDP---GQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSD------VMGSDHCPIGLEIELLEHHH 262 (265)
T ss_dssp HHHCCCS---CCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEEEEEECTT------CCSSSBCCEEEEEECCCCC-
T ss_pred HhhCCCC---CCCCCcCCCCCccccCceEEEEEEEECHHHHhhhcEEEEeCC------CCCCCcceEEEEhhhhhhcc
Confidence 9999876 5799987665443 3457899999999999988999999853 36899999999999766554
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=7.4e-36 Score=297.39 Aligned_cols=258 Identities=26% Similarity=0.420 Sum_probs=187.0
Q ss_pred CCCeEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 018111 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (360)
Q Consensus 39 ~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (360)
...|||+||||+|++...+++...+.++|+.++||||||||++..... +.. ...|.
T Consensus 147 ~~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~----------~~~------------~~~la-- 202 (467)
T 2j63_A 147 SRMYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDE----------ADA------------NATLG-- 202 (467)
T ss_dssp TTEEEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTC----------HHH------------HHTSS--
T ss_pred CCCeEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhc----------cch------------HHHHh--
Confidence 456999999999998765443357999999999999999999876431 100 01122
Q ss_pred CCCCceEEEec--CCCCceeEEEEEeecCCCc----eeeccC---------------------CCCcccEEEEEc-----
Q 018111 119 PFKNYQIWWSL--ADSKYAGTALLVKKCFQPK----KVSFSL---------------------EKTDGRVILAEF----- 166 (360)
Q Consensus 119 ~~~gy~~~~~~--~~~~~~Gvailsr~pi~~~----~v~~~~---------------------~~~~~r~l~v~~----- 166 (360)
...||++++.. ...++.|+|||+|+|+.+. .+...+ .+.++|++.+++
T Consensus 203 ~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~ 282 (467)
T 2j63_A 203 VVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPD 282 (467)
T ss_dssp CCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCC
T ss_pred hcCCceEEEecccCCCCcceEEEEEeCCccccccceeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCc
Confidence 12689776653 2445789999999987311 121111 125788888887
Q ss_pred -----CcEEEEEEEcCCCCCccchhhHHHHH-HHHHHHHHHHHhc--------------------CCCCEEEEccccccC
Q 018111 167 -----ETFYLLNTYAPNNGWKEEENSFQRRR-KWDKRIQEFVLQC--------------------SGKPLIWCGDLNVSH 220 (360)
Q Consensus 167 -----~~l~v~nvh~~~~~~~~~~~~~~~r~-~~l~~l~~~l~~~--------------------~~~p~Il~GDFN~~~ 220 (360)
..+.|+|+|+|+.....+ ++.+|. .|++.|.+++... ...|+|||||||..+
T Consensus 283 ~~~~~~~~~vinvYlP~~~~~~~--r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p 360 (467)
T 2j63_A 283 SASSSSRIALVNTYVANSGMGLT--RLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAE 360 (467)
T ss_dssp C----CCEEEEEEECCCCCTTST--THHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCC
T ss_pred ccccCceEEEEEEECCCCCcchH--HHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCC
Confidence 579999999999875444 333344 3445565555432 257999999999999
Q ss_pred ccccCcC---hhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccccCCCCCcceeccCCCCCcc-
Q 018111 221 EEIDVSH---PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY- 296 (360)
Q Consensus 221 ~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~r~~~~~~~~~~~~T~~~~~~~~~- 296 (360)
.+.|.++ +.. +.+..++.+.++.+|..++...+|+|+||.++|... +.||||++....+
T Consensus 361 ~~~D~~~~~~~~~---------------~~~~~gf~~~er~~~~~lL~~~gL~DafR~~~p~~~--~~yTw~s~r~~~~~ 423 (467)
T 2j63_A 361 RDYDRYYAGTFKS---------------MQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAG--PVYSFWSQRINGRP 423 (467)
T ss_dssp STTSBCCCSCHHH---------------HTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBC--SCCSBCCTTTTTTT
T ss_pred chhhhccccchhh---------------cccccccCHHHHHHHHHHHhhCCCEEehHhhCCCCC--CCccccCCCCCccc
Confidence 8887765 332 225568889999999999876669999999888642 4699998665444
Q ss_pred cCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeeec
Q 018111 297 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 345 (360)
Q Consensus 297 ~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~~ 345 (360)
.+.+.||||||+|+.+..++..+.|... ..+|||+||+++|.+
T Consensus 424 ~n~g~RIDyIlvS~~l~~~v~~~~I~~~------~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 424 RNLGWRLDYFVVSSRLASYVVDCFPMPT------VMGSDHCPFQMWMRH 466 (467)
T ss_dssp TTCCBCCEEEEEEGGGGGGEEEEEECTT------CCSSSBCCEEEEEEC
T ss_pred CCCCceeEEEEEcHHHHcceeEEEECCC------CCCCCcccEEEEEEc
Confidence 3457899999999999888999999753 468999999999975
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.5e-34 Score=261.59 Aligned_cols=250 Identities=24% Similarity=0.389 Sum_probs=179.6
Q ss_pred CeEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCC
Q 018111 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (360)
Q Consensus 41 ~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 120 (360)
+|||+||||+|++... ..+.++|++.+||||||||++.....+. . ..+. .
T Consensus 1 mlrv~t~Nv~g~~~~~----~~i~~~i~~~~~Dii~lQE~~~~~~~~~----------~-------------~~~~---~ 50 (257)
T 2voa_A 1 MLKIATFNVNSIRSRL----HIVIPWLKENKPDILCMQETKVENRKFP----------E-------------ADFH---R 50 (257)
T ss_dssp CEEEEEEECSCGGGTH----HHHHHHHHHHCCSEEEEECCCCCGGGCC----------H-------------HHHH---T
T ss_pred CeEEEEEecCChHHHH----HHHHHHHhhcCCCEEEEEEeecchhhcC----------H-------------HHhh---h
Confidence 4899999999886544 5799999999999999999986532111 0 0111 1
Q ss_pred CCceEEEecCCCCceeEEEEEeecCCCceeeccCCC---CcccEEEEEcCcEEEEEEEcCCCCCccchhhHHHHHHHHHH
Q 018111 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK---TDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 197 (360)
Q Consensus 121 ~gy~~~~~~~~~~~~Gvailsr~pi~~~~v~~~~~~---~~~r~l~v~~~~l~v~nvh~~~~~~~~~~~~~~~r~~~l~~ 197 (360)
.||+.++.. ..++.|+||+||.|+.. +...++. ..+|++.+++..+.|+|+|+|+...... .++..|.++++.
T Consensus 51 ~gy~~~~~~-~~~~~G~ailsr~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~~~-~~~~~r~~~~~~ 126 (257)
T 2voa_A 51 IGYHVVFSG-SKGRNGVAIASLEEPED--VSFGLDSEPKDEDRLIRAKIAGIDVINTYVPQGFKIDS-EKYQYKLQWLER 126 (257)
T ss_dssp TTCEEEEEE-ETTEEEEEEEESSCCEE--EEESCSSSSCCGGGEEEEEETTEEEEEEECCCCSCTTS-HHHHHHHHHHHH
T ss_pred CCCcEEEcC-CCCccEEEEEEccChHH--heecCCCCccccCcEEEEEECCEEEEEEEeCCCCCCCc-HHHHHHHHHHHH
Confidence 588766542 34567999999998642 2222321 1678888999999999999998764211 134456677888
Q ss_pred HHHHHHhc--CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeec
Q 018111 198 IQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 275 (360)
Q Consensus 198 l~~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~r~ 275 (360)
|.+++.+. .+.|+|||||||+.+.+.|.+++..| .+..++.+.++.++..++..+ |.|+|+.
T Consensus 127 l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~-l~D~~~~ 190 (257)
T 2voa_A 127 LYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKL---------------KNHVCFHEDARRAYKKILELG-FVDVLRK 190 (257)
T ss_dssp HHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGC---------------TTSTTTCHHHHHHHHHHHTTT-CEEHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHh---------------CCCCCCCHHHHHHHHHHHHcC-cEeeehh
Confidence 88888653 57899999999999888776654322 234567777788888888644 9999998
Q ss_pred cccCCCCCcceeccCC-CCCcc-cCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeeec
Q 018111 276 LHKEKDMDCGFSWSGN-PIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 345 (360)
Q Consensus 276 ~~~~~~~~~~~T~~~~-~~~~~-~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~~ 345 (360)
.+|.. ..+||++. ....+ ...+.||||||+|+++...+..+.+..... ....+|||+||+++|.+
T Consensus 191 ~~p~~---~~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~~--~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 191 IHPNE---RIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYADIKPR--LAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp HSTTC---CCCSBCCTTSTTTTTTTCCBCCEEEEECHHHHTTEEEEEECCHHH--HSSSCCSBCCEEEEECC
T ss_pred hCCCC---CCcceeccccCCceecCceEEEEEEEECHHHHhhhheeEeehhhc--cCCCCCCccCEEEEEeC
Confidence 88764 46999865 43333 234689999999999987788888875210 11368999999999874
No 4
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=7.7e-34 Score=259.82 Aligned_cols=250 Identities=23% Similarity=0.407 Sum_probs=180.7
Q ss_pred CeEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCC
Q 018111 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (360)
Q Consensus 41 ~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 120 (360)
.|||+||||+|++...++ .+.++|+..+||||||||++.....+ .. .+.. .
T Consensus 1 ml~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~----------~~----------~l~~------~ 51 (259)
T 2jc5_A 1 MLKIISANVNGIRSAYKK---GFYEYIAASGADIVCVQELKAQEADL----------SA----------DMKN------P 51 (259)
T ss_dssp CEEEEEEECSSHHHHHHT---THHHHHHHTTCSEEEEECCCCCGGGC----------CH----------HHHS------G
T ss_pred CcEEEEEeeccHHHHHHh---HHHHHHHhcCCCEEEEEEecchhhcc----------Ch----------hhcc------c
Confidence 389999999998765532 49999999999999999998664211 10 0111 1
Q ss_pred CCceEEEec-CCCCceeEEEEEeecCCCceeeccCC----CCcccEEEEEcCcEEEEEEEcCCCCCccchhhHHHHHHHH
Q 018111 121 KNYQIWWSL-ADSKYAGTALLVKKCFQPKKVSFSLE----KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 195 (360)
Q Consensus 121 ~gy~~~~~~-~~~~~~Gvailsr~pi~~~~v~~~~~----~~~~r~l~v~~~~l~v~nvh~~~~~~~~~~~~~~~r~~~l 195 (360)
.||.+++.. ...+..|++|+||.|+.. +...++ +..+|++.+++..+.|+|+|+++.....+ +..+|.+++
T Consensus 52 ~gy~~~~~~~~~~~~~G~ailsr~~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~~~--r~~~~~~~~ 127 (259)
T 2jc5_A 52 HGMHGHWHCAEKRGYSGVAVYSKRKPDN--VQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEE--RQQVKYRFL 127 (259)
T ss_dssp GGCEEEEECCSSTTCCCEEEEESSCCSE--EEESCSCHHHHTTCCEEEEEETTEEEEEEECCCCTTCHH--HHHHHHHHH
T ss_pred cCCeEEEeccCCCCcceEEEEEecCcee--EEeCCCCCccCCCCeEEEEEcCCEEEEEEeccCCCCCcH--HHHHHHHHH
Confidence 588766653 234467999999998642 222222 14678888999999999999999876433 334456778
Q ss_pred HHHHHHHHhc--CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeee
Q 018111 196 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 273 (360)
Q Consensus 196 ~~l~~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~ 273 (360)
+.|.+.+.+. .+.|+|||||||+.+.+.|.+.+. .+....++.+.++..+..++...+|.|+|
T Consensus 128 ~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~l~d~~ 192 (259)
T 2jc5_A 128 DAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWK---------------GNQKNSGFLPEEREWIGKVIHKLGWTDMW 192 (259)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCST---------------TCTTSTTSCHHHHHHHHHHHHTTCCEEHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHhccCCcEEee
Confidence 8888877653 478999999999998876654321 12234567777788888888556699999
Q ss_pred eccccCCCCCcceeccCCCCCcc-cCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeeecCC
Q 018111 274 RFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 347 (360)
Q Consensus 274 r~~~~~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~~~~ 347 (360)
+..++.. .++||++.....+ .+.+.||||||+++.+..++..+.+... ..+|||+||+++|.+..
T Consensus 193 ~~~~~~~---~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~------~~~SDH~pv~~~l~~~~ 258 (259)
T 2jc5_A 193 RTLYPDV---PGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKD------EKFSDHAPLVVEYDYAA 258 (259)
T ss_dssp HHHCTTC---CCCCEESCSSHHHHTTCEECCEEEEECHHHHTTEEEEEECCS------SCCSSBCCEEEEESCCC
T ss_pred HhhCCCC---CCccEECCcCCCccCCCeeEEEEEEECHHHHhHHhheeecCC------CCCCCcccEEEEEeccc
Confidence 9888754 4599986543222 1235799999999999877888888742 47899999999998754
No 5
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=1.9e-33 Score=256.71 Aligned_cols=251 Identities=26% Similarity=0.429 Sum_probs=180.3
Q ss_pred eEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 018111 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (360)
Q Consensus 42 lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (360)
|||+||||+|++... ..+.++|++.+||||||||+........ ...+. ..
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~DIv~LQE~~~~~~~~~-----------------------~~~~~---~~ 50 (256)
T 2jc4_A 1 MKITTWNVNSLNVRL----PQVQNLLADNPPDILVLQELKLDQDKFP-----------------------AAALQ---MM 50 (256)
T ss_dssp CEEEEEECSCHHHHH----HHHHHHHHSSCCSEEEEECCCSCGGGSC-----------------------HHHHH---TT
T ss_pred CEEEEEEcCCcHHHH----HHHHHHHHhcCCCEEEEEeeccchhcCC-----------------------HhHHh---hc
Confidence 799999999987654 5799999999999999999987642110 01111 15
Q ss_pred CceEEEecCCCCceeEEEEEeecCCCceeeccC--CCCcccEEEEEcCcEEEEEEEcCCCCCccchhhHHHHHHHHHHHH
Q 018111 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL--EKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 199 (360)
Q Consensus 122 gy~~~~~~~~~~~~Gvailsr~pi~~~~v~~~~--~~~~~r~l~v~~~~l~v~nvh~~~~~~~~~~~~~~~r~~~l~~l~ 199 (360)
||+.++. +..+..|++|++|.|+......++. .+..++++.+++..+.|+|+|+++...... ..+..|.++++.|.
T Consensus 51 gy~~~~~-~~~~~~G~ailsr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~-~~~~~r~~~~~~l~ 128 (256)
T 2jc4_A 51 GWHCVWS-GQKTYNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGVRVINVYCVNGEALDS-PKFKYKEQWFAALT 128 (256)
T ss_dssp TCEEEEE-CCSSSCCEEEEESSCCEEEEESCTTSTTCCSCCEEEEEETTEEEEEEECCCCCSTTS-HHHHHHHHHHHHHH
T ss_pred CCeEEEC-CCCcceEEEEEECCChHHheecCCCCccCCcCcEEEEEeCCEEEEEEEecCCCCCCc-HhHHHHHHHHHHHH
Confidence 8877664 3445679999999987422221211 124678888888999999999998875321 13445667788888
Q ss_pred HHHHhc--CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccc
Q 018111 200 EFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 277 (360)
Q Consensus 200 ~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~r~~~ 277 (360)
+.+.+. ...|+|||||||+.+.+.|..++..+ .+..++.+.++..+..++..+ |.|+|+..+
T Consensus 129 ~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~-l~D~~~~~~ 192 (256)
T 2jc4_A 129 EFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKW---------------HEKIHCSSVERQWFQNLLDLG-LTDSLRQVH 192 (256)
T ss_dssp HHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGG---------------TTCTTSCHHHHHHHHHHHTTT-CEEHHHHHC
T ss_pred HHHHHHhcCCCCEEEEeECCCCCchhhccChhHh---------------CCCCCcCHHHHHHHHHHHhcC-cEEhhhhhC
Confidence 887653 67899999999998887666544322 244567777888888888655 999999888
Q ss_pred cCCCCCcceeccCCCCCcc-cCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeeec
Q 018111 278 KEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 345 (360)
Q Consensus 278 ~~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~~ 345 (360)
+.. +.+||++.....+ ...+.||||||+++.+...+.++.+.... .....+|||+||+++|.+
T Consensus 193 ~~~---~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~--~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 193 PEG---AFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLET--RALERPSDHAPVTAEFDW 256 (256)
T ss_dssp CSS---CCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEEECHHH--HTSSSCCSBCCEEEEECC
T ss_pred CCC---CceeeEcCCCCccccCcEEEEEEEEECHHHHhheeEEEEEhhc--ccCCCCCCcccEEEEecC
Confidence 764 4699986544333 23457999999999998778888887521 112468999999999975
No 6
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=1.4e-33 Score=268.19 Aligned_cols=252 Identities=32% Similarity=0.607 Sum_probs=178.4
Q ss_pred CCCCCeEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhC
Q 018111 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (360)
Q Consensus 37 ~~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 116 (360)
.....|||+||||+|++...++ .++++|+..+||||||||+......+. ..|.
T Consensus 57 ~~~~~lrv~t~Nv~g~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------------------------~~l~ 109 (318)
T 1hd7_A 57 GKPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP------------------------AELQ 109 (318)
T ss_dssp SCBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCC--------------------------------
T ss_pred CCCCceEEEEEecCcchhhhhh---hHHHHHHhhCCCEEEEEEccCchhhcc------------------------HHHH
Confidence 3456799999999998765543 499999999999999999987643111 0111
Q ss_pred CCCCCCc-eEEEec-C-CCCceeEEEEEeecCCCceeeccCC----CCcccEEEEEcCcEEEEEEEcCCCCCccchhhHH
Q 018111 117 SPPFKNY-QIWWSL-A-DSKYAGTALLVKKCFQPKKVSFSLE----KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ 189 (360)
Q Consensus 117 ~~~~~gy-~~~~~~-~-~~~~~Gvailsr~pi~~~~v~~~~~----~~~~r~l~v~~~~l~v~nvh~~~~~~~~~~~~~~ 189 (360)
. ..|| +.++.. . ..++.|++|+||.|+ ..+...++ +..+|++.+++..+.|+|+|+++...... ++.
T Consensus 110 ~--~~gy~~~~~~~~~~~~g~~Gvailsr~~~--~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~~~--~~~ 183 (318)
T 1hd7_A 110 E--LPGLSHQYWSAPSDKEGYSGVGLLSRQCP--LKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV--RLE 183 (318)
T ss_dssp -----CCCEEEEECC-----CCCEEEEESSCC--SEEEESCSCGGGSSSSCEEEEECSSCEEEEEECCCCCGGGT--THH
T ss_pred h--cCCCceEEEecCCCCCccceEEEEEcCCc--eeEEecCCCcccCCCCcEEEEEcCCEEEEEEEcCCCCCccc--cHH
Confidence 1 1588 555543 1 234569999999985 23332221 25678999999999999999988775433 344
Q ss_pred HHHHHHHHHHHHHHhc-CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HhhhhcC
Q 018111 190 RRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKEG 267 (360)
Q Consensus 190 ~r~~~l~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 267 (360)
.|.+|++.|..++... ...|+|||||||+.+.+.|.+++... ....++.+.++.++ ..++..
T Consensus 184 ~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~~~~~~~---------------~~~~g~~~~~~~~~~~~ll~~- 247 (318)
T 1hd7_A 184 YRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGN---------------KKNAGFTPQERQGFGELLQAV- 247 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHH---------------TTSTTSCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhccChhhc---------------CCCCCcCHHHHHHHHHHHhhC-
Confidence 5777888888877543 24899999999998887776654321 24567778888888 888887
Q ss_pred CeeeeeeccccCCCCCcceeccCCCCCcc-cCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeeec
Q 018111 268 RLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 345 (360)
Q Consensus 268 ~l~D~~r~~~~~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~~ 345 (360)
+|+|+|+.+++... ..|||++.....+ .+.+.||||||+++.+...+..+.+... ..+|||+||+++|.+
T Consensus 248 ~l~D~~r~~~p~~~--~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~~v~~~~v~~~------~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 248 PLADSFRHLYPNTP--YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK------ALGSDHCPITLYLAL 318 (318)
T ss_dssp TCEEHHHHHCTTCT--TCCSBCCSGGGHHHHTCCBCCEEEEECGGGGGGEEEEEECTT------CCSSSBCCEEEEECC
T ss_pred CCEEeehhhCCCCC--CCcceECCcCCCcccCCceEEEEEEECHHHHhhhhheEeecc------CCCCCccCEEEEecC
Confidence 59999998887642 3599986543222 2335799999999999877888888753 357999999999974
No 7
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=5.1e-33 Score=259.09 Aligned_cols=254 Identities=32% Similarity=0.622 Sum_probs=181.9
Q ss_pred CCCCCCCeEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 018111 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (360)
Q Consensus 35 ~~~~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (360)
+......|||+||||+|++...++ .++++|+..+||||||||++.....+. ..
T Consensus 22 ~~~~~~~l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------~~------------------ 74 (285)
T 2o3h_A 22 PSGKPATLKIASWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP------AE------------------ 74 (285)
T ss_dssp TTSCBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCTTSCC------GG------------------
T ss_pred CCCCccceEEEEEecccChhhhhh---hHHHHHHhcCCCEEEEEEeecchhhcc------HH------------------
Confidence 344566899999999998765543 399999999999999999987643221 00
Q ss_pred hCCCCCCCc-eEEEec-C-CCCceeEEEEEeecCCCceeeccC----CCCcccEEEEEcCcEEEEEEEcCCCCCccchhh
Q 018111 115 LSSPPFKNY-QIWWSL-A-DSKYAGTALLVKKCFQPKKVSFSL----EKTDGRVILAEFETFYLLNTYAPNNGWKEEENS 187 (360)
Q Consensus 115 l~~~~~~gy-~~~~~~-~-~~~~~Gvailsr~pi~~~~v~~~~----~~~~~r~l~v~~~~l~v~nvh~~~~~~~~~~~~ 187 (360)
|.. ..|| +.++.. . ..+..|++|++|.|+ ..+...+ .+..+|++.+++..+.|+|+|+++...... +
T Consensus 75 l~~--~~gy~~~~~~~~~~~~g~~Gvailsr~~~--~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~~~--~ 148 (285)
T 2o3h_A 75 LQE--LPGLSHQYWSAPSDKEGYSGVGLLSRQCP--LKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV--R 148 (285)
T ss_dssp GGG--CGGGCEEEEECBC--CCSCCEEEEESSCC--SEEEESCSCGGGSSBCCEEEEECSSCEEEEEECCCCCGGGT--T
T ss_pred HHh--ccCCcEEEEecccCCcccceEEEEEccCh--HHeeeccCCcccCCCCcEEEEEeCCEEEEEEEcCCCCCcch--h
Confidence 110 1588 555543 2 234569999999984 2333221 125678888999999999999988765433 3
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-Hhhhh
Q 018111 188 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILK 265 (360)
Q Consensus 188 ~~~r~~~l~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 265 (360)
...|.++++.|.+.+... ...|+|||||||+.+...|.+++. .+....++.+.++.++ ..++.
T Consensus 149 ~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~~~~---------------~~~~~~g~~~~~~~~~~~~~l~ 213 (285)
T 2o3h_A 149 LEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK---------------GNKKNAGFTPQERQGFGELLQA 213 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTT---------------TCTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHHhc
Confidence 445777888888887653 458999999999988776654432 1223456777788888 88888
Q ss_pred cCCeeeeeeccccCCCCCcceeccCCCCCcc-cCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeee
Q 018111 266 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344 (360)
Q Consensus 266 ~~~l~D~~r~~~~~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~ 344 (360)
. +|+|+|+..++... ..+||++.....+ ...+.||||||+++.+...+..+.+... ..+|||+||+++|.
T Consensus 214 ~-~l~D~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~v~~~~v~~~------~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 214 V-PLADSFRHLYPNTP--YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK------ALGSDHCPITLYLA 284 (285)
T ss_dssp T-TCEEHHHHHCTTCC--SCCSBCCSSTTHHHHTCCBCCEEEEECGGGGGGEEEEEECTT------CCSSSBCCEEEEEC
T ss_pred C-CCEEEEEecCCCCC--CcEeEecCcCCccccCceeEEEEEEECHHHHhhhhheEeecc------CCCCCeecEEEEec
Confidence 7 59999998887642 3599986544322 1335799999999999877888988752 35799999999997
Q ss_pred c
Q 018111 345 E 345 (360)
Q Consensus 345 ~ 345 (360)
+
T Consensus 285 l 285 (285)
T 2o3h_A 285 L 285 (285)
T ss_dssp C
T ss_pred C
Confidence 5
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=4.2e-32 Score=249.50 Aligned_cols=252 Identities=23% Similarity=0.376 Sum_probs=175.9
Q ss_pred eEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 018111 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (360)
Q Consensus 42 lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (360)
|||+||||+|++... ..+.++|+..+||||||||+........ . .+++. .
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~Dii~LQE~~~~~~~~~----------~----------~~l~~------~ 50 (268)
T 1ako_A 1 MKFVSFNINGLRARP----HQLEAIVEKHQPDVIGLQETKVHDDMFP----------L----------EEVAK------L 50 (268)
T ss_dssp CEEEEEECSCGGGCH----HHHHHHHHHHCCSEEEEECCCCCGGGCC----------H----------HHHHH------T
T ss_pred CEEEEEehhHHHHHH----HHHHHHHHHcCCCEEEEEeccCChhhCC----------H----------hHhcc------C
Confidence 799999999886533 6899999999999999999986542110 0 01122 5
Q ss_pred CceEEEecCCCCceeEEEEEeecCCCceeeccCC----CCcccEEEEEcC----cEEEEEEEcCCCCCccchhhHHHHHH
Q 018111 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE----KTDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRRRK 193 (360)
Q Consensus 122 gy~~~~~~~~~~~~Gvailsr~pi~~~~v~~~~~----~~~~r~l~v~~~----~l~v~nvh~~~~~~~~~~~~~~~r~~ 193 (360)
||.+++.. ..+..|++|++|.|+. .+...++ ...++++.+.+. .+.|+|+|+++.....+...+..|..
T Consensus 51 gy~~~~~~-~~~~~G~ailsr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~ 127 (268)
T 1ako_A 51 GYNVFYHG-QKGHYGVALLTKETPI--AVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQ 127 (268)
T ss_dssp TCEEEEEE-ETTEEEEEEEESSCCS--EEEESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHH
T ss_pred CCcEEEeC-CCCcceEEEEEecCcc--eeeeCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHH
Confidence 88766542 3457899999999864 2322332 134567766653 79999999998875432223445778
Q ss_pred HHHHHHHHHHhc--CCCCEEEEccccccCccccCcChh----hhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcC
Q 018111 194 WDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPE----FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 267 (360)
Q Consensus 194 ~l~~l~~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (360)
+++.|.+.+.+. .+.|+|||||||+.+.+.+...+. .|.. .+..++.+.++.++..+.+.+
T Consensus 128 ~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~-------------~~~~~~~~~~~~~~~~l~~~g 194 (268)
T 1ako_A 128 FYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLR-------------TGKCSFLPEEREWMDRLMSWG 194 (268)
T ss_dssp HHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHH-------------HTBTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhcc-------------CCCcCcCHHHHHHHHHHhcCC
Confidence 888888888753 578999999999998886654321 1110 033566777778888777655
Q ss_pred CeeeeeeccccCCCCCcceeccCCCCCcc-cCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeee
Q 018111 268 RLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344 (360)
Q Consensus 268 ~l~D~~r~~~~~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~ 344 (360)
|.|+|+..+|... ..|||++.....+ .+.+.||||||+|+.+...+..+.+.... .....+|||+||+++|+
T Consensus 195 -l~D~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~i~~~~--~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 195 -LVDTFRHANPQTA--DRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEI--RSMEKPSDHAPVWATFR 267 (268)
T ss_dssp -EEEHHHHHSTTCC--SCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTTEEEEEECHHH--HTSSSCCSBCCEEEEEC
T ss_pred -CEEeEhhhCCCCC--CCeeEeCCcCCccccCceEEEEEEEeCHHHHHHHHhceechhh--cCCCCCCCcccEEEEcc
Confidence 9999998888642 5699987544333 12457999999999998777788876421 01236899999999985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=2.5e-32 Score=246.34 Aligned_cols=230 Identities=25% Similarity=0.350 Sum_probs=161.4
Q ss_pred CCCCeEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 018111 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (360)
Q Consensus 38 ~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 117 (360)
..++|||+||||+|++...++ ..+.++|++.+||||||||++.....+ ..+
T Consensus 4 ~~~~lri~t~Nv~g~~~~~~~--~~~~~~i~~~~~DIv~LQE~~~~~~~~-------------------------~~l-- 54 (238)
T 1vyb_A 4 SNSHITILTLNINGLNSAIKR--HRLASWIKSQDPSVCCIQETHLTCRDT-------------------------HRL-- 54 (238)
T ss_dssp CCCCEEEEEEECSCCCSHHHH--HHHHHHHHHHCCSEEEEECCCCCTTSG-------------------------GGC--
T ss_pred CCCcceEEEEecccCCchhhH--HHHHHHHHHcCCCEEEEecccCCCCCc-------------------------hhH--
Confidence 356799999999998765433 579999999999999999997653211 111
Q ss_pred CCCCCceEE-EecCCCCceeEEEEEeecCCCceeeccCCCCcccEEEEEc----CcEEEEEEEcCCCCCccchhhHHHHH
Q 018111 118 PPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRRR 192 (360)
Q Consensus 118 ~~~~gy~~~-~~~~~~~~~Gvailsr~pi~~~~v~~~~~~~~~r~l~v~~----~~l~v~nvh~~~~~~~~~~~~~~~r~ 192 (360)
...||..+ ...+..+.+|++|++|.++. ..+.....+..+|++.+++ ..+.|+|+|+|+....
T Consensus 55 -~~~~y~~~~~~~~~~~~~Gvail~r~~~~-~~~~~~~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~~---------- 122 (238)
T 1vyb_A 55 -KIKGWRKIYQANGKQKKAGVAILVSDKTD-FKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP---------- 122 (238)
T ss_dssp -CCTTCCEEEEECCSSSSCCEEEEECTTCC-CEEEEEEECTTSSEEEEEEEETTEEEEEEEEECCSSSHH----------
T ss_pred -hhCCCCeEEEccCCCCCceEEEEEeCCCC-ccccceeEcCCCcEEEEEEEeCCCcEEEEEEecCCCCcH----------
Confidence 12578653 34333456799999999752 2222111124677777765 3799999999886621
Q ss_pred HHHHHHHHHHHhcCCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeee
Q 018111 193 KWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272 (360)
Q Consensus 193 ~~l~~l~~~l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~ 272 (360)
++++.+.+.+.+..+.|+|||||||+.+.+.|... .++.+.+...+..++...+|.|+
T Consensus 123 ~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~d~ 180 (238)
T 1vyb_A 123 RFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRST----------------------RQKVNKDTQELNSALHQADLIDI 180 (238)
T ss_dssp HHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTT----------------------CCCCCHHHHHHHHHHHHTTEEEH
T ss_pred HHHHHHHHHHHhccCCCEEEEccCCCCCCccccCC----------------------CCCCcHHHHHHHHHHhhCCCEEh
Confidence 23455666664445689999999999876543321 22334456778888866669999
Q ss_pred eeccccCCCCCcceeccCCCCCcccCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeee
Q 018111 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 344 (360)
Q Consensus 273 ~r~~~~~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~ 344 (360)
|+..+|.. ..+||++.... ...||||||+|+.+...+..+.+.. ..+|||+||+++|+
T Consensus 181 ~~~~~~~~---~~~T~~~~~~~----~~~rID~i~~s~~~~~~~~~~~v~~-------~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 181 YRTLHPKS---TEYTFFSAPHH----TYSKIDHIVGSKALLSKCKRTEIIT-------NYLSDHSAIKLELR 238 (238)
T ss_dssp HHHHCTTC---CCCSEEETTTT----EEECCEEEEEEGGGGGGEEEEEEEC-------CSSSSSCEEEEEEC
T ss_pred hHhhCCCC---CceeEEcCCCC----cccceEEEEeCHHHHhhhhhceeec-------CCCCCcccEEEEeC
Confidence 99887754 46999754322 2469999999999987788888874 36899999999984
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.97 E-value=1.1e-29 Score=245.90 Aligned_cols=235 Identities=22% Similarity=0.292 Sum_probs=148.7
Q ss_pred cCCCCCCCCeEEEEEeCccchhhh-cCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHH
Q 018111 33 SEENSKKDPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (360)
Q Consensus 33 ~~~~~~~~~lrI~s~Ni~g~~~~~-~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (360)
..+..++..|||+||||+|+.... +.|...|+++|+..+||||||||+..... ..+
T Consensus 111 ~~~~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~-----------------------~~l 167 (362)
T 4gew_A 111 TAEDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDL-----------------------API 167 (362)
T ss_dssp --CTTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTC-----------------------HHH
T ss_pred CCCCCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHh-----------------------HHH
Confidence 345566778999999999875322 22336799999999999999999964321 111
Q ss_pred HHhhCCCCCCCceEEEecCCCCceeEEEEEeecCCCceee-ccCCC--CcccEEEE--EcC--cEEEEEEEcCCCCCccc
Q 018111 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEK--TDGRVILA--EFE--TFYLLNTYAPNNGWKEE 184 (360)
Q Consensus 112 ~~~l~~~~~~gy~~~~~~~~~~~~Gvailsr~pi~~~~v~-~~~~~--~~~r~l~v--~~~--~l~v~nvh~~~~~~~~~ 184 (360)
+.+ +.+|..+.. +..+++|++||+|+|+...... ...+. ..+.++.+ .+. .+.|+|+|+++....
T Consensus 168 -~~~----~~~y~~~~~-~~~~~~G~aIlsk~~i~~~~~~~~~~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~-- 239 (362)
T 4gew_A 168 -DKL----QSLYKIYYS-NKGCQYYTAILVSKMFDVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH-- 239 (362)
T ss_dssp -HGG----GGTEEEEES-STTSSSEEEEEEETTEEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG--
T ss_pred -HHh----cCCceEEeC-CCCCCceEEEEEeccCccccccccCCCCCcccceEEEEEEEECCEEEEEEEecCCccccc--
Confidence 222 156666553 4455779999999976322221 11221 12223333 333 699999999887643
Q ss_pred hhhHHHHHHHHHHHHHHHH----hcCCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH
Q 018111 185 ENSFQRRRKWDKRIQEFVL----QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 260 (360)
Q Consensus 185 ~~~~~~r~~~l~~l~~~l~----~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (360)
...|..++..+...+. ...+.|+|||||||..+.+....
T Consensus 240 ---~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~~---------------------------------- 282 (362)
T 4gew_A 240 ---RPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV---------------------------------- 282 (362)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCCC----------------------------------
T ss_pred ---hhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccchh----------------------------------
Confidence 2234445555554443 24678999999999877553211
Q ss_pred HhhhhcCCeeeeeeccccCCCCCcceeccCCCCCccc---CccceeEEEEeChhhhhhheeeEecc-CccccCCCCCCCc
Q 018111 261 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR---GKRMRIDYFIVSEELKDRIIACEMQG-HGIELEGFYGSDH 336 (360)
Q Consensus 261 ~~~l~~~~l~D~~r~~~~~~~~~~~~T~~~~~~~~~~---~~~~rID~I~~s~~l~~~v~~~~i~~-~~~~~~~~~~SDH 336 (360)
..+|.|+|+.+++... .+|||+......+. ..+.||||||+++.+. +....+.. ...+..+.++|||
T Consensus 283 -----~~gl~Da~~~~~~~~~--~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l~--~~~~~vi~~~ri~~~~~~pSDH 353 (362)
T 4gew_A 283 -----PDGVKDAWEAAGSDNK--TKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFPSDH 353 (362)
T ss_dssp -----CTTCEEHHHHTTCCGG--GCCSEETTTCTTSCCSSCCEECCEEEEEESSCC--EEEEEEECCSCCTTTSSCSCSS
T ss_pred -----cchHHHHHHHhCCCCC--CCcCcccccCcccccCCCCCcceEEEEEcCCcc--eeEEEEEeeeecCCCCCCCCcc
Confidence 1349999998876553 67999765443322 2357999999999875 34444432 1122223568999
Q ss_pred cceEEeee
Q 018111 337 CPVSLELS 344 (360)
Q Consensus 337 ~PV~v~l~ 344 (360)
+||+++|.
T Consensus 354 ~pV~A~FS 361 (362)
T 4gew_A 354 WAINATFF 361 (362)
T ss_dssp CEEEEEEE
T ss_pred cCEEEEEc
Confidence 99999986
No 11
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.96 E-value=8e-29 Score=225.00 Aligned_cols=232 Identities=20% Similarity=0.260 Sum_probs=142.6
Q ss_pred CCCCCCeEEEEEeCccchhh-hcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 018111 36 NSKKDPLKFVTWNANSLLLR-VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (360)
Q Consensus 36 ~~~~~~lrI~s~Ni~g~~~~-~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (360)
..+.++|||+||||+|+... ...+...|+++|+..+||||||||+..... +.+.+.
T Consensus 8 ~~~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~-----------------------~~l~~~ 64 (256)
T 4fva_A 8 DLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDL-----------------------APIDKL 64 (256)
T ss_dssp CCTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTC-----------------------HHHHGG
T ss_pred cCCCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHh-----------------------HHHHHh
Confidence 34678899999999987432 122336799999999999999999964421 111122
Q ss_pred hCCCCCCCceEEEecCCCCceeEEEEEeecCCCceee-ccCCC--CcccEEEE--EcC--cEEEEEEEcCCCCCccchhh
Q 018111 115 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEK--TDGRVILA--EFE--TFYLLNTYAPNNGWKEEENS 187 (360)
Q Consensus 115 l~~~~~~gy~~~~~~~~~~~~Gvailsr~pi~~~~v~-~~~~~--~~~r~l~v--~~~--~l~v~nvh~~~~~~~~~~~~ 187 (360)
.++..+......+..|++|+++.++...... ..+.. .....+.+ ... .+.|+|+|+++......
T Consensus 65 ------~~~~~~~~~~~~~~~g~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~--- 135 (256)
T 4fva_A 65 ------QSLYKIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRP--- 135 (256)
T ss_dssp ------GGTEEEEESSTTSSSEEEEEEETTCEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHH---
T ss_pred ------cCCceEeecCCCCCcceEEEEeecccceecccccCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcchH---
Confidence 2333344444555779999999986422221 12221 12223333 332 69999999988764321
Q ss_pred HHHHHHHHHHHHHH----HHhcCCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhh
Q 018111 188 FQRRRKWDKRIQEF----VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 263 (360)
Q Consensus 188 ~~~r~~~l~~l~~~----l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
.+..++..+.+. .....+.|+|||||||+.+.+....
T Consensus 136 --~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~------------------------------------- 176 (256)
T 4fva_A 136 --QRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV------------------------------------- 176 (256)
T ss_dssp --HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC-------------------------------------
T ss_pred --HHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh-------------------------------------
Confidence 223333333333 3334678999999999876543211
Q ss_pred hhcCCeeeeeeccccCCCCCcceeccCCCCCcc---cCccceeEEEEeChhhhhhheeeEecc-CccccCCCCCCCccce
Q 018111 264 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY---RGKRMRIDYFIVSEELKDRIIACEMQG-HGIELEGFYGSDHCPV 339 (360)
Q Consensus 264 l~~~~l~D~~r~~~~~~~~~~~~T~~~~~~~~~---~~~~~rID~I~~s~~l~~~v~~~~i~~-~~~~~~~~~~SDH~PV 339 (360)
..++.|+|+...+... .++||+......+ .....||||||+++.+. +....+.. ...+..+..+|||+||
T Consensus 177 --~~~~~d~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~~--~~~~~~~~~~~~~~~~~~~SDH~pv 250 (256)
T 4fva_A 177 --PDGVKDAWEAAGSDNK--TKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFPSDHWAI 250 (256)
T ss_dssp --CTTCEEHHHHTTCCGG--GCCSEETTTCCSSCSCCSCEECCEEEEEESSCC--EEEEEEECCSCCTTTCSCSCSSCEE
T ss_pred --hcchhhHHHHhCCCCC--CCcccccccCcccccCCCCCcCeEEEEEcCCce--eeEEEEEeeEecCCCCCCcCcccCE
Confidence 1238899988766543 6789865433222 12357899999999874 34455442 1111223468999999
Q ss_pred EEeee
Q 018111 340 SLELS 344 (360)
Q Consensus 340 ~v~l~ 344 (360)
+++|.
T Consensus 251 ~a~Fs 255 (256)
T 4fva_A 251 NATFF 255 (256)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99986
No 12
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.96 E-value=4.1e-29 Score=228.72 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=144.0
Q ss_pred CCeEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 018111 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (360)
Q Consensus 40 ~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 119 (360)
+.|||+||||+|.+... ..+.++|++.+||||||||++..
T Consensus 6 ~~mki~s~Nvn~~r~~~----~~l~~~l~~~~~DIl~LQEt~~~------------------------------------ 45 (240)
T 2ei9_A 6 PRLRIGQINLGGAEDAT----RELPSIARDLGLDIVLVQEQYSM------------------------------------ 45 (240)
T ss_dssp CEEEEEEEECTTCHHHH----HTHHHHHHHHTCSEEEEESCCTT------------------------------------
T ss_pred ccceEEEEecCccHHHH----HHHHHHHHHcCCCEEEeecceEc------------------------------------
Confidence 35999999999998876 45999999999999999999621
Q ss_pred CCCceEEEecCCCCceeEEEEEeecCCCceeeccCCCCcccEEEEEcCcEEEEEEEcCCCCCccchhhHHHHHHHHHHHH
Q 018111 120 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 199 (360)
Q Consensus 120 ~~gy~~~~~~~~~~~~Gvailsr~pi~~~~v~~~~~~~~~r~l~v~~~~l~v~nvh~~~~~~~~~~~~~~~r~~~l~~l~ 199 (360)
.||. +. . .+.+|+||+++.+..+..+.....+..++++.+++..+.|+|+|+|++... ..+.++++.|.
T Consensus 46 -~gy~-~~--~-~~~~gvail~~~~~~~~~~~~~~~~~~~~~i~i~~~~i~i~svY~P~~~~~------~~~~~~l~~l~ 114 (240)
T 2ei9_A 46 -VGFL-AQ--C-GAHPKAGVYIRNRVLPCAVLHHLSSTHITVVHIGGWDLYMVSAYFQYSDPI------DPYLHRLGNIL 114 (240)
T ss_dssp -SSSE-EC--C-SSSCSEEEEESSTTSCEEECGGGCCSSEEEEEETTTTEEEEEEECCTTSCS------HHHHHHHHHHH
T ss_pred -CCce-Ee--c-cCCCCEEEEEecCCcceeeecccCCCCEEEEEEeeccEEEEEEEcCCCCch------hHHHHHHHHHH
Confidence 4676 32 1 246799999998654554433333345567778778999999999998753 23556666665
Q ss_pred HHHHhcCCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeec--cc
Q 018111 200 EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF--LH 277 (360)
Q Consensus 200 ~~l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~r~--~~ 277 (360)
..+ ...++|||||||+.+.. +.+.... .++.+.++......+. ++.|.++. ++
T Consensus 115 ~~~---~~~~~Ii~GDfN~~~~~---w~~~~~~-----------------~~~~~~~r~~~~~~l~--~~~d~~~l~~~~ 169 (240)
T 2ei9_A 115 DRL---RGARVVICADTNAHSPL---WHSLPRH-----------------YVGRGQEVADRRAKME--DFIGARRLVVHN 169 (240)
T ss_dssp HHT---TTSCEEEEEECCCCCGG---GTCCHHH-----------------HSSSCHHHHHHHHHHH--HHHHHTTCEECC
T ss_pred Hhc---CCCcEEEEEeccccccc---ccCCCCC-----------------CCCcchhhHHHHHHHH--HHHHhcCCEecC
Confidence 433 35799999999997642 2221100 0222223322223332 26666663 34
Q ss_pred cCCCCCcceeccCCCCCcccCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeeecCCC
Q 018111 278 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 348 (360)
Q Consensus 278 ~~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~~~~~ 348 (360)
+.. ..||||++. .++||||||+|+.+.. ..+.+.. ..+|||+||+++|+...+
T Consensus 170 ~~~---~~~T~~s~~------~~~rID~~l~s~~l~~--~~~~i~~-------~~~SDH~Pv~~~l~~~~~ 222 (240)
T 2ei9_A 170 ADG---HLPTFSTAN------GESYVDVTLSTRGVRV--SEWRVTN-------ESSSDHRLIVFGVGGGTT 222 (240)
T ss_dssp CTT---CCCSEEETT------EEECCEEEEECTTCCE--EEEEECS-------CCSSSBCCEEEEEEC---
T ss_pred CCC---CCceEeCCC------CceEEEEEEecCcccc--CCeEECC-------CCCCCcccEEEEECCCCC
Confidence 432 469998642 1479999999999875 5666652 468999999999987653
No 13
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.96 E-value=1.4e-27 Score=217.85 Aligned_cols=224 Identities=17% Similarity=0.143 Sum_probs=140.1
Q ss_pred CCCCeEEEEEeCccchhhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 018111 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (360)
Q Consensus 38 ~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 117 (360)
..+.|||+||||++.+... ..+.++|++.+||||||||++...... +.
T Consensus 16 ~~~~lri~s~Nv~~~~~~~----~~l~~~i~~~~~DIv~lQE~~~~~~~~---------------------------~~- 63 (245)
T 1wdu_A 16 NGPPYRVLQANLQRKKLAT----AELAIEAATRKAAIALIQEPYVGGAKS---------------------------MK- 63 (245)
T ss_dssp --CCEEEEEEECTTCHHHH----HHHHHHHHHHTCSEEEEESCCC---------------------------------C-
T ss_pred cCcceeeeeeeccccHHHH----HHHHHHHhhcCCCEEEEEcccccCCcc---------------------------cc-
Confidence 4567999999999887654 579999999999999999998764211 00
Q ss_pred CCCCCceEEEecC-CCCceeEEEEEee-cCCCceeecc-CCCCcccEEEEEc--CcEEEEEEEcCCCCCccchhhHHHHH
Q 018111 118 PPFKNYQIWWSLA-DSKYAGTALLVKK-CFQPKKVSFS-LEKTDGRVILAEF--ETFYLLNTYAPNNGWKEEENSFQRRR 192 (360)
Q Consensus 118 ~~~~gy~~~~~~~-~~~~~Gvailsr~-pi~~~~v~~~-~~~~~~r~l~v~~--~~l~v~nvh~~~~~~~~~~~~~~~r~ 192 (360)
...||..+.... ..+.+|+||+++. ++.. . ... .......++.+.. ..+.|+|+|+++.... .
T Consensus 64 -~~~gy~~~~~~~~~~~~~GvaIl~~~~~~~~-~-~~~~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~~---------~ 131 (245)
T 1wdu_A 64 -GFRGVRVFQSTAQGDGTVKAAIAVFDHDLDV-I-QYPQLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI---------E 131 (245)
T ss_dssp -CCSSCEEEECCCCTTCCCCEEEEECCSSCEE-E-ECTTTCCSSEEEEEEECSSCEEEEEEEECCTTSCS---------H
T ss_pred -CCCcceEeccccccCCCCCeEEEEECCCcce-E-EecccccCCEEEEEEEcCCCcEEEEEEEeCCCCCH---------H
Confidence 115887665432 2346799999965 4421 1 111 1211112233333 3799999999987632 1
Q ss_pred HHHHHHHHHHHhcCCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeee
Q 018111 193 KWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 272 (360)
Q Consensus 193 ~~l~~l~~~l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~ 272 (360)
.+++.|..++......|+|||||||+.+...+. .. ...+...+..++...++..
T Consensus 132 ~~~~~l~~~~~~~~~~~~Ii~GDfN~~~~~~~~------------------------~~-~~~~~~~l~~~~~~~~l~~- 185 (245)
T 1wdu_A 132 SYLEQIKRVERKMGPKRLIFGGDANAKSTWWGS------------------------KE-DDARGDQLMGTLGELGLHI- 185 (245)
T ss_dssp HHHHHHHHHHHTTCSSSEEEEEECCCCCGGGTC------------------------SS-CCHHHHHHHHHHHHHTCEE-
T ss_pred HHHHHHHHHHHHhCCCcEEEEeccccCcccCCC------------------------CC-cCcchHHHHHHHHHCCcEE-
Confidence 234455555544456899999999997643111 00 1123445556555433432
Q ss_pred eeccccCCCCCcceeccCCCCCcccCccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEEeeecC
Q 018111 273 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 346 (360)
Q Consensus 273 ~r~~~~~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v~l~~~ 346 (360)
.++. ..+||++.... ...+.||||||+|+.+...+..+.+... ..+|||+||+++|.+.
T Consensus 186 ---~~~~----~~~T~~~~~~~--~~~~~rID~i~~s~~~~~~v~~~~v~~~------~~~SDH~Pv~~~l~l~ 244 (245)
T 1wdu_A 186 ---LNEG----DVPTFDTIRGG--KRYQSRVDVTFCTEDMLDLIDGWRVDED------LVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp ---CCCS----CCCSEEC-------CCEECCEEEEECGGGBTTEEEEEECTT------SSSSSBCCEEEEECCC
T ss_pred ---ecCC----CCCcEECCCCC--CCCCCEEEEEEeChHHHhhccceEEcCC------CCCCCcccEEEEEEeC
Confidence 3332 35899764321 1235899999999999877888988742 5789999999999864
No 14
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.95 E-value=3.1e-27 Score=211.67 Aligned_cols=233 Identities=18% Similarity=0.266 Sum_probs=138.0
Q ss_pred CCeEEEEEeCccchhhh-cCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 018111 40 DPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (360)
Q Consensus 40 ~~lrI~s~Ni~g~~~~~-~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (360)
++|||+||||+|+.... +.|...|+++|++.+||||||||+.... + ..+...
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~------------~-----------~~l~~~---- 54 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAY------------V-----------QYLKKR---- 54 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-----------HHHHHH----
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH------------H-----------HHHHHh----
Confidence 57999999999874321 2223679999999999999999995321 1 122233
Q ss_pred CCCCceEEEecCCCCceeEEEEEeecCCCceee-ccCCC-Cccc-EEEEEc----CcEEEEEEEcCCCCCccchhhHHHH
Q 018111 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEK-TDGR-VILAEF----ETFYLLNTYAPNNGWKEEENSFQRR 191 (360)
Q Consensus 119 ~~~gy~~~~~~~~~~~~Gvailsr~pi~~~~v~-~~~~~-~~~r-~l~v~~----~~l~v~nvh~~~~~~~~~~~~~~~r 191 (360)
.++..++.....+..|.+++++.++...... ..... ..++ ++.+.. ..+.|+++|+++.... ...|
T Consensus 55 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~-----~~~r 127 (250)
T 4f1h_A 55 --AVSYLFFEGSDDGYFTGIMLRKSRVKFLESEIICFPTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQ-----SQER 127 (250)
T ss_dssp --CTTEEEEESCSSSSEEEEEEETTTCEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG-----HHHH
T ss_pred --ccCceeecccccccCceeEEeeccccceecccccccCccccceEEEEEEecCCcEEEEecccccccccc-----HHHH
Confidence 2344444444445667777776654322211 11111 2222 333322 2799999999876543 2346
Q ss_pred HHHHHHHHHHHHhc-CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCee
Q 018111 192 RKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 270 (360)
Q Consensus 192 ~~~l~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 270 (360)
..+++.+.+.+.+. ...|+|||||||+.+.+.+... .. ...+.
T Consensus 128 ~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~~~-----------------------------------~~-~~~~~ 171 (250)
T 4f1h_A 128 TKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVG-----------------------------------GL-PAGVC 171 (250)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEEECCCCHHHHHTTT-----------------------------------SS-CTTEE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEecCCCCcchhhhh-----------------------------------hc-cccch
Confidence 66777888887654 5679999999998665432211 11 23377
Q ss_pred eeeeccccCCCCCcceeccCCCC--Ccc-cCccceeEEEEeChhhhhhh---eeeEeccCccccCCCCCCCccceEEeee
Q 018111 271 DAYRFLHKEKDMDCGFSWSGNPI--GKY-RGKRMRIDYFIVSEELKDRI---IACEMQGHGIELEGFYGSDHCPVSLELS 344 (360)
Q Consensus 271 D~~r~~~~~~~~~~~~T~~~~~~--~~~-~~~~~rID~I~~s~~l~~~v---~~~~i~~~~~~~~~~~~SDH~PV~v~l~ 344 (360)
|+|+.+++... ..++|..... ..+ ...+.||||||+++...... ....+...........+|||+||+++|+
T Consensus 172 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 172 DVWEQLGKQEH--CRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHMALIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp EHHHHTTCCGG--GCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSCCCEEEEEEEECCSCCTTSSCSCSBCEEEEEEE
T ss_pred HHHHHhcCCcc--CCcccccccCCCCCcCCCCCccEEEEEEeCcccccceeeeEEEEecccccCCCCCCCcccCEEEEEe
Confidence 88877766543 4455533221 111 23467999999998765332 2222222111112356899999999996
No 15
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.95 E-value=2e-27 Score=215.50 Aligned_cols=236 Identities=21% Similarity=0.293 Sum_probs=135.1
Q ss_pred CCCCeEEEEEeCccchhh-hcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhC
Q 018111 38 KKDPLKFVTWNANSLLLR-VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (360)
Q Consensus 38 ~~~~lrI~s~Ni~g~~~~-~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 116 (360)
...+|||+||||+|+... .+.|...|+++|++.+||||||||+.... + +.+.+.+
T Consensus 6 ~~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~------------~-----------~~l~~~~- 61 (256)
T 4gz1_A 6 DSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPY------------C-----------AYLKKRA- 61 (256)
T ss_dssp GGGEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-----------HHHHHHC-
T ss_pred CCCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHH------------H-----------HHHHhhc-
Confidence 456899999999987532 12233679999999999999999995321 1 2222331
Q ss_pred CCCCCCceEEEecCCCCceeEEEEEeecC-CCceee-ccCCC-Cc-ccEEEEE--c--CcEEEEEEEcCCCCCccchhhH
Q 018111 117 SPPFKNYQIWWSLADSKYAGTALLVKKCF-QPKKVS-FSLEK-TD-GRVILAE--F--ETFYLLNTYAPNNGWKEEENSF 188 (360)
Q Consensus 117 ~~~~~gy~~~~~~~~~~~~Gvailsr~pi-~~~~v~-~~~~~-~~-~r~l~v~--~--~~l~v~nvh~~~~~~~~~~~~~ 188 (360)
..|.++ .....+. |.+++++.+. ...... ..... .. ...+.+. . ..+.|+|+|+++.... .
T Consensus 62 ----~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~-----~ 130 (256)
T 4gz1_A 62 ----ASYTII-TGNEEGY-FTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH-----S 130 (256)
T ss_dssp ----TTEEEE-ESCSSSS-EEEEEEETTTEEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG-----H
T ss_pred ----ccccee-eccccCC-ceEEEEEeccccceecccccCCcccccceEEEEEEEeCCEEEEEEeecccccccc-----h
Confidence 344433 3233334 4455555542 111111 11111 11 2233332 2 2799999999876543 2
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcC
Q 018111 189 QRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 267 (360)
Q Consensus 189 ~~r~~~l~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (360)
..|.+++..+.+.+.+. .+.|+|||||||+.+.+.+. ..... .
T Consensus 131 ~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~-----------------------------------~~~~~-~ 174 (256)
T 4gz1_A 131 AERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIK-----------------------------------CGGLP-D 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHHHHH-----------------------------------HTCSC-T
T ss_pred hhhhHHHHHHhhhhhhccCcceEEEeCccCCCcchhhh-----------------------------------hhhcc-c
Confidence 23556677777777654 56799999999986543211 11222 3
Q ss_pred CeeeeeeccccCCCCCcceeccCCCC--Ccc-cCccceeEEEEeChhhhh-hheeeEeccCccccCCCCCCCccceEEee
Q 018111 268 RLIDAYRFLHKEKDMDCGFSWSGNPI--GKY-RGKRMRIDYFIVSEELKD-RIIACEMQGHGIELEGFYGSDHCPVSLEL 343 (360)
Q Consensus 268 ~l~D~~r~~~~~~~~~~~~T~~~~~~--~~~-~~~~~rID~I~~s~~l~~-~v~~~~i~~~~~~~~~~~~SDH~PV~v~l 343 (360)
++.|+|+.++.... ..++|..... ..+ ...+.||||||+++.... ......+...........+|||+||+++|
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~ 252 (256)
T 4gz1_A 175 NVFDAWEFLGKPKH--CQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTL 252 (256)
T ss_dssp TEEEHHHHTTCCGG--GSCSEETTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEE
T ss_pred hhhhHHHHhcCCCC--CCcccccCCCCccccCCCCCccEEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEE
Confidence 47888887765443 4455543221 112 234689999999876431 12333333211111235689999999999
Q ss_pred ecC
Q 018111 344 SEA 346 (360)
Q Consensus 344 ~~~ 346 (360)
++-
T Consensus 253 ~iv 255 (256)
T 4gz1_A 253 NVV 255 (256)
T ss_dssp EEC
T ss_pred EEE
Confidence 863
No 16
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.95 E-value=9.9e-27 Score=213.31 Aligned_cols=247 Identities=19% Similarity=0.262 Sum_probs=147.0
Q ss_pred CCeEEEEEeCccchhh-hcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 018111 40 DPLKFVTWNANSLLLR-VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (360)
Q Consensus 40 ~~lrI~s~Ni~g~~~~-~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (360)
.+|||+||||++.... .+.+...++++|+..+||||||||+........ ....+..+- ....+.+.|...
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~----~~~~~~~d~-----~~~~~~~~l~~~ 72 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKI----IFDDIREEN-----YAWVLLETLQKY 72 (266)
T ss_dssp -CEEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCE----EETTEETTC-----HHHHHHHHHTTT
T ss_pred CceEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccc----ccccccccc-----HHHHHHHHHHHh
Confidence 4699999999765321 112236799999999999999999975432000 000000000 001123445533
Q ss_pred CCCCceEEEe---cC-CCCceeEEEEEeecCCCceeeccCC------C-CcccEEEEEc----CcEEEEEEEcCCCCCcc
Q 018111 119 PFKNYQIWWS---LA-DSKYAGTALLVKKCFQPKKVSFSLE------K-TDGRVILAEF----ETFYLLNTYAPNNGWKE 183 (360)
Q Consensus 119 ~~~gy~~~~~---~~-~~~~~Gvailsr~pi~~~~v~~~~~------~-~~~r~l~v~~----~~l~v~nvh~~~~~~~~ 183 (360)
...+|.+++. .+ ..+..|++|++|.|+..... +.+. . ..++++.+.+ ..+.|+|+|+++.....
T Consensus 73 ~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~ 151 (266)
T 3teb_A 73 TDTDYYLHWSNSHIGFGKYNEGVAVITRHKIKAEDE-FYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCET 151 (266)
T ss_dssp CCSCCEEEEEEEEECSTTEEEEEEEEESSCCSEEEE-EECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTT
T ss_pred CCCCeEEEEeccccCccccCCeEEEEECceecCcee-EEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCCh
Confidence 2235765532 22 23356999999998732221 1111 1 1234455544 37999999998875322
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhh
Q 018111 184 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 263 (360)
Q Consensus 184 ~~~~~~~r~~~l~~l~~~l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
. .|..+++.|.+.+.+ ..|+|||||||+.+... ...+..+
T Consensus 152 ~-----~r~~q~~~l~~~~~~--~~~~il~GDfN~~~~~~---------------------------------~~~~~~l 191 (266)
T 3teb_A 152 E-----DMGKNIQTILNRTQN--SNLKILMGDFNTDAIGN---------------------------------VAAYENI 191 (266)
T ss_dssp C-----CHHHHHHHHHTSSCS--CCEEEEEEECCCCTTTC---------------------------------HHHHHHH
T ss_pred H-----HHHHHHHHHHHHHhc--CCcEEEEeECCCCCCCC---------------------------------CcHHHhh
Confidence 1 144556666665532 78999999999977311 1223445
Q ss_pred hhcCCeeeeeeccccCCCCCcceeccCCCCCccc--CccceeEEEEeChhhhhhheeeEeccCccccCCCCCCCccceEE
Q 018111 264 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR--GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 341 (360)
Q Consensus 264 l~~~~l~D~~r~~~~~~~~~~~~T~~~~~~~~~~--~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~v 341 (360)
+..+ |.|+|+..++.. .++||.. ....|. ..+.||||||+++.+. +..+.+...... ...+|||+||++
T Consensus 192 ~~~~-l~d~~~~~~~~~---~~~t~~~-~~~~~~~~~~~~riD~i~~s~~~~--~~~~~v~~~~~~--~~~~SDH~Pv~~ 262 (266)
T 3teb_A 192 LSQG-LFDTYVMAEKKD---DGITVDK-SIHGWDNDKAKKRLDYIFSNKELK--VKESKVIFNNKN--KEIVSDHFGIEV 262 (266)
T ss_dssp HTTT-CEEHHHHCSEEC---CCCCEEC-C------CTTEECCEEEEESSCCC--EEEEEEESSSSS--SCCCSSSCEEEE
T ss_pred cccc-ccchHHhhcccc---CCccccC-ccCCcCcCCcCCeeEEEEeCCCeE--EEEEEEEeCCCC--CCCcCCccCEEE
Confidence 5545 999999887754 4577732 112231 2468999999999875 677777754221 246899999999
Q ss_pred eeec
Q 018111 342 ELSE 345 (360)
Q Consensus 342 ~l~~ 345 (360)
+|++
T Consensus 263 ~l~l 266 (266)
T 3teb_A 263 KIEF 266 (266)
T ss_dssp EECC
T ss_pred EEEC
Confidence 9975
No 17
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.94 E-value=8.7e-26 Score=208.09 Aligned_cols=233 Identities=19% Similarity=0.207 Sum_probs=144.0
Q ss_pred CCeEEEEEeCccchhh-----hcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 018111 40 DPLKFVTWNANSLLLR-----VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (360)
Q Consensus 40 ~~lrI~s~Ni~g~~~~-----~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (360)
.+|||+||||++.... +..+...++++|+..+||||||||+.... + +.+.+.
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~------------~-----------~~l~~~ 58 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQ------------F-----------QDLRAG 58 (267)
T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHH------------H-----------HHHHHH
T ss_pred CcEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHH------------H-----------HHHHHh
Confidence 4699999999876431 12344789999999999999999997431 1 223344
Q ss_pred hCCCCCCCceEEEecCCC---CceeEEEE---EeecCCCceee-cc----CC------CCccc-EEEEEc------CcEE
Q 018111 115 LSSPPFKNYQIWWSLADS---KYAGTALL---VKKCFQPKKVS-FS----LE------KTDGR-VILAEF------ETFY 170 (360)
Q Consensus 115 l~~~~~~gy~~~~~~~~~---~~~Gvail---sr~pi~~~~v~-~~----~~------~~~~r-~l~v~~------~~l~ 170 (360)
| .+|.++...... ...+++|+ +|.|+...... +. .+ ....| ++.+.+ ..+.
T Consensus 59 l-----~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~ 133 (267)
T 3g6s_A 59 L-----PEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFM 133 (267)
T ss_dssp C-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEE
T ss_pred c-----cCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEEE
Confidence 3 578766533222 23458999 56654211110 10 01 01223 233322 2799
Q ss_pred EEEEEcCCCCCccchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCC
Q 018111 171 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 249 (360)
Q Consensus 171 v~nvh~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (360)
|+|+|+.+... ..|.++++.|.+.+.+. .+.|+|||||||+.+.+.
T Consensus 134 v~~~Hl~~~~~-------~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~~~~-------------------------- 180 (267)
T 3g6s_A 134 AVNTHFDHVGE-------EARRQSALLIIRKIKEIVGERPAVVTGDFNVTDASD-------------------------- 180 (267)
T ss_dssp EEEEECCSSCH-------HHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCTTSH--------------------------
T ss_pred EEEeCCCCCCH-------HHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCCCH--------------------------
Confidence 99999976541 23666677787877654 478999999999977542
Q ss_pred CCCCHHHHHHHHhhhhcC-CeeeeeeccccCCCCCcceeccCCCCCcccCccceeEEEEeChhhhhhheeeEeccCcccc
Q 018111 250 PGFTIAERKRFGAILKEG-RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 328 (360)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~-~l~D~~r~~~~~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~ 328 (360)
.+..+...+ +|.|+|+....... ..+||....... ...+.||||||+++++ .+..+.+......
T Consensus 181 ---------~~~~l~~~~~~l~d~~~~~~~~~~--~~~T~~~~~~~~-~~~~~riD~I~~s~~~--~~~~~~v~~~~~~- 245 (267)
T 3g6s_A 181 ---------AYETITTNEFVMKDAYKTAARVTG--VDYTFHDFARIP-AEDCEKIDFIFVTPQV--LVKSCEIPAEVPE- 245 (267)
T ss_dssp ---------HHHHHHSSSSCCEEHHHHCSEEEE--CSCSBCTTTTSC-GGGCCCCEEEEECTTS--EEEEEEECCCCSS-
T ss_pred ---------HHHHhhcCCcchhhhHhhhccccC--CCCCEeCCCCCC-CCCCCcEeEEEeCCCc--eEEEEEEecCCCC-
Confidence 122233332 39999987653221 357776432210 1234799999999987 4677777753211
Q ss_pred CCCCCCCccceEEeeecCCCch
Q 018111 329 EGFYGSDHCPVSLELSEASSDS 350 (360)
Q Consensus 329 ~~~~~SDH~PV~v~l~~~~~~~ 350 (360)
. .+|||+||++++...+.++
T Consensus 246 -~-~~SDH~PV~a~~~~~~~~~ 265 (267)
T 3g6s_A 246 -A-LLSDHNPQLADLELEHHHH 265 (267)
T ss_dssp -S-CCCSBCCEEEEEEEC----
T ss_pred -C-CCCCcccEEEEEEeccccc
Confidence 2 5799999999999876543
No 18
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.94 E-value=1.2e-25 Score=205.83 Aligned_cols=224 Identities=18% Similarity=0.159 Sum_probs=139.6
Q ss_pred eEEEEEeCccchhhhc-----CCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhC
Q 018111 42 LKFVTWNANSLLLRVK-----NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (360)
Q Consensus 42 lrI~s~Ni~g~~~~~~-----~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 116 (360)
|||+||||++...... .+...++++|+..+||||||||+.... + +.+.+.
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~------------~-----------~~l~~~-- 55 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQ------------V-----------RDLKAY-- 55 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-----------HHHHHH--
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHH------------H-----------HHHHhc--
Confidence 6999999987654321 223679999999999999999997431 1 112232
Q ss_pred CCCCCCceEEEecCC--CCceeEEEEEe---ecCCCceeeccC------CC-----Cccc-EEEEEc------CcEEEEE
Q 018111 117 SPPFKNYQIWWSLAD--SKYAGTALLVK---KCFQPKKVSFSL------EK-----TDGR-VILAEF------ETFYLLN 173 (360)
Q Consensus 117 ~~~~~gy~~~~~~~~--~~~~Gvailsr---~pi~~~~v~~~~------~~-----~~~r-~l~v~~------~~l~v~n 173 (360)
.||.++..... .+..|++|++| .++.... .+.+ +. ...| ++.+.+ ..+.|+|
T Consensus 56 ----l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~ 130 (257)
T 3l1w_A 56 ----TTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTG-YFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVIN 130 (257)
T ss_dssp ----SSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEE-EEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEE
T ss_pred ----CCCcEEEecccCCCCCceEEEEEEcceEEEEecC-eEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEE
Confidence 37876654332 34679999998 4432111 1111 10 1233 232332 3799999
Q ss_pred EEcCCCCCccchhhHHHHHHHHHHHHHHHHh-cCCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCC
Q 018111 174 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 252 (360)
Q Consensus 174 vh~~~~~~~~~~~~~~~r~~~l~~l~~~l~~-~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (360)
+|+.+... ..|..+++.|.+.+.+ ....|+|||||||+.+.+.
T Consensus 131 ~Hl~~~~~-------~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~~~~----------------------------- 174 (257)
T 3l1w_A 131 VHLDHISA-------HARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEE----------------------------- 174 (257)
T ss_dssp EECCSSCH-------HHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCTTSH-----------------------------
T ss_pred eCCCCCCH-------HHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCCCcH-----------------------------
Confidence 99987642 2366667777777762 2223999999999976542
Q ss_pred CHHHHHHHHhhhhcCCeeeeeeccccCCCCCcceeccCCCCCcccCccceeEEEEeChhhhhhheeeEeccCccccCCCC
Q 018111 253 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 332 (360)
Q Consensus 253 ~~~~~~~~~~~l~~~~l~D~~r~~~~~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~l~~~v~~~~i~~~~~~~~~~~ 332 (360)
.+. .+..+ |.|+++..++.. ..+||...........+.||||||+ +.+ .+..+.+..... ....
T Consensus 175 ------~~~-~l~~~-l~d~~~~~~~~~---~~~t~~~~~~~~~~~~~~riD~i~~-~~~--~~~~~~v~~~~~--~~~~ 238 (257)
T 3l1w_A 175 ------VHQ-LVQKK-FQDSKNLATHYG---PRGTFQNFTYTKPWAELEEIDYIYV-KGW--QVQQTASLTDSI--DGRF 238 (257)
T ss_dssp ------HHH-HHTTT-CEEGGGTSEEES---CSCCBCTTCTTCCGGGCBCCEEEEE-ESE--EEEEEEECCCCB--TTBC
T ss_pred ------HHH-Hhhhh-ccchhhhhcccC---CCCcccCCcccCCCCCCCceeEEEE-CCc--EEEEEEEeccCc--CCcc
Confidence 112 34434 999998776542 4577754322111123479999999 666 366777765321 1246
Q ss_pred CCCccceEEeeecCC
Q 018111 333 GSDHCPVSLELSEAS 347 (360)
Q Consensus 333 ~SDH~PV~v~l~~~~ 347 (360)
+|||+||+++|.+..
T Consensus 239 ~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 239 PSDHFPLEAEVAGEN 253 (257)
T ss_dssp SSSBCCEEEEEEEC-
T ss_pred cCCcceEEEEEEEEe
Confidence 899999999999865
No 19
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.7e-24 Score=202.06 Aligned_cols=234 Identities=21% Similarity=0.195 Sum_probs=143.3
Q ss_pred CCCeEEEEEeCccchhhh-------cCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHH
Q 018111 39 KDPLKFVTWNANSLLLRV-------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (360)
Q Consensus 39 ~~~lrI~s~Ni~g~~~~~-------~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (360)
..+|||+||||+...... ..+...++++|+..+||||||||+... ++ +.+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~------------~~-----------~~l 60 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLH------------QL-----------KDM 60 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHH------------HH-----------HHH
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHH------------HH-----------HHH
Confidence 457999999996553321 122368999999999999999999743 11 223
Q ss_pred HHhhCCCCCCCceEEEecCCC---CceeEEEE---EeecCCCceee-cc----CC-----CCccc-EEEEEc------Cc
Q 018111 112 MRALSSPPFKNYQIWWSLADS---KYAGTALL---VKKCFQPKKVS-FS----LE-----KTDGR-VILAEF------ET 168 (360)
Q Consensus 112 ~~~l~~~~~~gy~~~~~~~~~---~~~Gvail---sr~pi~~~~v~-~~----~~-----~~~~r-~l~v~~------~~ 168 (360)
.+.| .+|.++...... ...+++|+ +|.|+...... .. .+ ....| ++.+.+ ..
T Consensus 61 ~~~l-----~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~ 135 (298)
T 3mpr_A 61 KEAL-----PGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFE 135 (298)
T ss_dssp HHHS-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCE
T ss_pred HHhC-----CCCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEcCCCCE
Confidence 3443 577765433221 23358999 77775322111 10 01 01223 223332 27
Q ss_pred EEEEEEEcCCCCCccchhhHHHHHHHHHHHHHHHHhc---CCCCEEEEccccccCccccCcChhhhhhhhcCCCCCCCCC
Q 018111 169 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 245 (360)
Q Consensus 169 l~v~nvh~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~---~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 245 (360)
+.|+|+|+.+.. ...|.++++.|.+.+.+. .+.|+|||||||+.+.+.
T Consensus 136 ~~v~~~Hl~~~~-------~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~---------------------- 186 (298)
T 3mpr_A 136 FLFFNLHMDHIG-------KKARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQ---------------------- 186 (298)
T ss_dssp EEEEEEECCSSC-------HHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSH----------------------
T ss_pred EEEEEecCCCCC-------HHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCH----------------------
Confidence 999999998543 224667778888888654 468999999999977542
Q ss_pred CCCCCCCCHHHHHHHHhhhhcCCeeeeeeccccCCCCCcceeccCCCCCcccCccceeEEEEeChhhhhhheeeEeccCc
Q 018111 246 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 325 (360)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~l~D~~r~~~~~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~l~~~v~~~~i~~~~ 325 (360)
.+..+...++|.|+|........ ..+||...... .....||||||+++++. +..+.+....
T Consensus 187 -------------~~~~l~~~g~l~D~~~~~~~~~~--~~~T~~~~~~~--~~~~~rID~Il~s~~~~--v~~~~v~~~~ 247 (298)
T 3mpr_A 187 -------------SYDAFVSKGVLCDSYEKCDYRYA--LNGTFNNFDPN--SFTESRIDHIFVSPSFH--VKRYGVLTDT 247 (298)
T ss_dssp -------------HHHHHHTTSSSEEHHHHCSEEEC--SSCSBCTTCTT--CCCSCCCEEEEECTTSE--EEEEEECCCC
T ss_pred -------------HHHHHhcCCcchhhHhhhcccCC--CCCCccCCCCC--CCCCceEEEEEeCCCee--EEEEEEecCc
Confidence 22344554559999887654221 24677543211 11357999999999874 5666665321
Q ss_pred cc----------------------cCCCCCCCccceEEeeecCCC
Q 018111 326 IE----------------------LEGFYGSDHCPVSLELSEASS 348 (360)
Q Consensus 326 ~~----------------------~~~~~~SDH~PV~v~l~~~~~ 348 (360)
.. .....+|||+||+|++.....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~~~ 292 (298)
T 3mpr_A 248 YRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFDLE 292 (298)
T ss_dssp EEEECC----------------CCEEEECSSSBCCEEEEEEECSS
T ss_pred cccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEecchh
Confidence 00 000146999999999886543
No 20
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.91 E-value=4.5e-24 Score=199.83 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=95.2
Q ss_pred CCCCCCeEEEEEeCccchhhh------cCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHH
Q 018111 36 NSKKDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKL 109 (360)
Q Consensus 36 ~~~~~~lrI~s~Ni~g~~~~~------~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 109 (360)
...+..|||+||||++..... ..+...+...+...+||||||||+..... .+
T Consensus 5 ~~~~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~----------------------~~ 62 (301)
T 1zwx_A 5 DEYPGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSA----------------------SH 62 (301)
T ss_dssp --CCCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHH----------------------HH
T ss_pred ccCCCceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHH----------------------HH
Confidence 345568999999998763210 11124566677889999999999975420 01
Q ss_pred HHHHhhCCCCCCCceEEEec---------------CCCCceeEEEEEeecCCCceeeccCC------CC-cccEEEEEc-
Q 018111 110 ILMRALSSPPFKNYQIWWSL---------------ADSKYAGTALLVKKCFQPKKVSFSLE------KT-DGRVILAEF- 166 (360)
Q Consensus 110 ~~~~~l~~~~~~gy~~~~~~---------------~~~~~~Gvailsr~pi~~~~v~~~~~------~~-~~r~l~v~~- 166 (360)
.+.+.|... .+|.+.+.. ...+..|++|+||+|+..... ..++ .. .+.++.+.+
T Consensus 63 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~pi~~~~~-~~~~~~~~~~~~~~r~~~~~~~~ 139 (301)
T 1zwx_A 63 RLLNNLREM--YPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQ-HIFQRGGGADRLSNKGFAYVKIM 139 (301)
T ss_dssp HHHHHTTTT--CCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESSCEEEEEE-EECSCCCGGGGGBCCEEEEEEEE
T ss_pred HHHHHHhhc--CCccccccCCccccccccccccccccccCCCEEEEecCCcccceE-EEecCCCCcccccCCCeEEEEEE
Confidence 112233211 122211100 012346999999998742221 1122 01 122454544
Q ss_pred ---CcEEEEEEEcCCCCCccc-hhhHHHHHHHHHHHHHHHHhc---CCCCEEEEccccccCcc
Q 018111 167 ---ETFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 222 (360)
Q Consensus 167 ---~~l~v~nvh~~~~~~~~~-~~~~~~r~~~l~~l~~~l~~~---~~~p~Il~GDFN~~~~~ 222 (360)
..+.|+|+|+++...... ......|..+++.|.+++.+. .+.|+|||||||+.+.+
T Consensus 140 ~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~ 202 (301)
T 1zwx_A 140 KNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT 202 (301)
T ss_dssp ETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS
T ss_pred ECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc
Confidence 279999999988753210 113445778888888888753 45799999999998765
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.89 E-value=1.4e-22 Score=189.84 Aligned_cols=163 Identities=18% Similarity=0.141 Sum_probs=92.5
Q ss_pred CCCCeEEEEEeCccchhhh------cCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHH
Q 018111 38 KKDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (360)
Q Consensus 38 ~~~~lrI~s~Ni~g~~~~~------~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (360)
....|||+||||++..... ..+...+...+...+||||||||+..... .+.+
T Consensus 6 ~~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~----------------------~~~l 63 (306)
T 2ddr_A 6 QNDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSA----------------------SDRL 63 (306)
T ss_dssp -CCEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHH----------------------HHHH
T ss_pred CCCEEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHH----------------------HHHH
Confidence 4567999999998764210 11124466667789999999999964320 0111
Q ss_pred HHhhCCC-----------CCCCceEEEec---CCCCceeEEEEEeecCCCcee-eccCC----CCcc-cEEEEEc----C
Q 018111 112 MRALSSP-----------PFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKV-SFSLE----KTDG-RVILAEF----E 167 (360)
Q Consensus 112 ~~~l~~~-----------~~~gy~~~~~~---~~~~~~Gvailsr~pi~~~~v-~~~~~----~~~~-r~l~v~~----~ 167 (360)
...|... ...||...+.. ...+..|++|+||.|+..... .++.. .... .++.+.+ .
T Consensus 64 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~g~ 143 (306)
T 2ddr_A 64 LGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDR 143 (306)
T ss_dssp HHHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCCC----CCCCEEEEEEEEETTE
T ss_pred HHHHhhhCCceeeccCcccccccccccccccccCccCCeEEEEECCCcccccEEEcCCCCCcchhcCCCeEEEEEEeCCE
Confidence 2222210 00123222211 112357999999998742221 11111 0122 3444444 2
Q ss_pred cEEEEEEEcCCCCCccc-hhhHHHHHHHHHHHHHHHHhc---CCCCEEEEccccccCcc
Q 018111 168 TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 222 (360)
Q Consensus 168 ~l~v~nvh~~~~~~~~~-~~~~~~r~~~l~~l~~~l~~~---~~~p~Il~GDFN~~~~~ 222 (360)
.+.|+|+|+++...... ......|..+++.|.+++... .+.|+|||||||+.+..
T Consensus 144 ~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~ 202 (306)
T 2ddr_A 144 FVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKIN 202 (306)
T ss_dssp EEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTT
T ss_pred EEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCccc
Confidence 69999999988753210 013345778888888888653 45799999999998754
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.88 E-value=4.3e-22 Score=189.03 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=94.9
Q ss_pred CCCCCeEEEEEeCccchhh------hcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHH
Q 018111 37 SKKDPLKFVTWNANSLLLR------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLI 110 (360)
Q Consensus 37 ~~~~~lrI~s~Ni~g~~~~------~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 110 (360)
.....|||+||||+++... +..+...+...+...+||||||||+..... . +.
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~-----------~-----------~~ 82 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGA-----------S-----------DK 82 (317)
T ss_dssp ---CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHH-----------H-----------HH
T ss_pred CCCCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHH-----------H-----------HH
Confidence 4557899999999876321 111224567777789999999999975421 0 11
Q ss_pred HHHhhCCCCCCCceEEEecCC-CC--------------ceeEEEEEeecCCCceeeccCCC------Ccc-cEEEEEc--
Q 018111 111 LMRALSSPPFKNYQIWWSLAD-SK--------------YAGTALLVKKCFQPKKVSFSLEK------TDG-RVILAEF-- 166 (360)
Q Consensus 111 ~~~~l~~~~~~gy~~~~~~~~-~~--------------~~Gvailsr~pi~~~~v~~~~~~------~~~-r~l~v~~-- 166 (360)
+.+.|... .+|.+...... .+ ..|++|+||.|+..... ..++. ... .++.+.+
T Consensus 83 l~~~L~~~--~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~~-~~~~~~~~~d~~~~r~~~~~~i~~ 159 (317)
T 3i41_A 83 LLSNVKKE--YPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQ-HVFKSGCGFDNDSNKGFVYTKIEK 159 (317)
T ss_dssp HHHHTTTT--CCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEESSCEEEEEE-EECSCCCSSGGGBCCEEEEEEEEE
T ss_pred HHHHHHHh--CCcccccCCccccCccCcccccccccccCCccEEEeCCCCcccee-EECCCCCCcccccCcceEEEEEEE
Confidence 23444321 12221111100 00 15999999999743222 12211 112 2333333
Q ss_pred --CcEEEEEEEcCCCCCccc-hhhHHHHHHHHHHHHHHHHhc---CCCCEEEEccccccCcc
Q 018111 167 --ETFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 222 (360)
Q Consensus 167 --~~l~v~nvh~~~~~~~~~-~~~~~~r~~~l~~l~~~l~~~---~~~p~Il~GDFN~~~~~ 222 (360)
..+.|+|+|+.+...... ......|..+++.|.+++.+. .+.|+|||||||+.+.+
T Consensus 160 ~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s 221 (317)
T 3i41_A 160 NGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT 221 (317)
T ss_dssp TTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS
T ss_pred CCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC
Confidence 279999999988653210 113456788888899988763 57899999999998864
No 23
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.81 E-value=1.3e-19 Score=164.02 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=99.9
Q ss_pred CCCCeEEEEEeCccchhhhcCCc-hhHHHHHhhcC-CCEEEEeeeecCCCCC---------CCCCccccccchhhhhhHH
Q 018111 38 KKDPLKFVTWNANSLLLRVKNNW-PEFSNFITTFD-PDVIALQEVRMPAAGS---------KDAPKNHQELKDDTKASRE 106 (360)
Q Consensus 38 ~~~~lrI~s~Ni~g~~~~~~~~~-~~l~~~i~~~~-pDIi~LQEv~~~~~~~---------~~~~~~~~~l~~~~~~~~~ 106 (360)
+...+||+|||++|........| ..+...|+..+ +|||+|||+..-.... .+.+ ..++.-
T Consensus 12 ~~~~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~--v~E~~w------- 82 (262)
T 2f1n_A 12 DLTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIP--VRELIW------- 82 (262)
T ss_dssp CGGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCC--CEEEEE-------
T ss_pred ccceeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcC--HHHHHH-------
Confidence 34579999999988643111001 36888999877 9999999997442111 0111 122211
Q ss_pred HHHHHHHhhCCCCCCCceE-EEecC--CCCceeEEEEEeecCCCceeeccCCCCcccEEEEEcCcEEEEEEEcCCCCCcc
Q 018111 107 EKLILMRALSSPPFKNYQI-WWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTDGRVILAEFETFYLLNTYAPNNGWKE 183 (360)
Q Consensus 107 ~~~~~~~~l~~~~~~gy~~-~~~~~--~~~~~Gvailsr~pi~~~~v~~~~~~~~~r~l~v~~~~l~v~nvh~~~~~~~~ 183 (360)
.|.....+++.+ |+... ..+..|+||+||.|+....+..+.....+.++.+.++.+.++|+|+......
T Consensus 83 -------~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr~~adev~vLp~~~~~~Rp~lgiri~~~~ff~tHa~a~~g~- 154 (262)
T 2f1n_A 83 -------NLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVRQGGRPLLGIRIGNDAFFTAHAIAMRNN- 154 (262)
T ss_dssp -------ECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEEECCSSTTCCCEEEEEETTEEEEEEECCSSSSC-
T ss_pred -------HhCCCCCCceEEEEEeeccCCCCceeeEEEEcccccceEECCCCCCCCCceEEEEECCEEEEEEEecCCCCc-
Confidence 111001133543 33322 2347799999999975211111111135568889999999999999988432
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCC-----CCEEEEccccccCccc
Q 018111 184 EENSFQRRRKWDKRIQEFVLQCSG-----KPLIWCGDLNVSHEEI 223 (360)
Q Consensus 184 ~~~~~~~r~~~l~~l~~~l~~~~~-----~p~Il~GDFN~~~~~~ 223 (360)
+ +.++...+.+++..... .|+||+||||..|.+.
T Consensus 155 d------a~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~P~sl 193 (262)
T 2f1n_A 155 D------APALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADL 193 (262)
T ss_dssp S------HHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHH
T ss_pred c------HHHHHHHHHHHHhcCcccccCCCcEEEEecCCCCCcch
Confidence 2 33446777777765444 6999999999988763
No 24
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.80 E-value=1.3e-18 Score=169.69 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=90.5
Q ss_pred CCCeEEEEEeCccch--------------hhhcCCchhHHHHHhhcCCCEEEEeeeecCCCCCCCCCccccccchhhhhh
Q 018111 39 KDPLKFVTWNANSLL--------------LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKAS 104 (360)
Q Consensus 39 ~~~lrI~s~Ni~g~~--------------~~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~ 104 (360)
...+||+||||..-. ..+..|...|+++|...+||||||||+.... +.+.
T Consensus 29 ~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q------------~~~~---- 92 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQ------------YFTL---- 92 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHH------------HHHT----
T ss_pred CCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHH------------HHHH----
Confidence 347999999996321 1122234779999999999999999997542 1010
Q ss_pred HHHHHHHHHhhCCCCCCCceEEEecC-C---------CCceeEEEEEeecC-CCcee-eccC---------C--------
Q 018111 105 REEKLILMRALSSPPFKNYQIWWSLA-D---------SKYAGTALLVKKCF-QPKKV-SFSL---------E-------- 155 (360)
Q Consensus 105 ~~~~~~~~~~l~~~~~~gy~~~~~~~-~---------~~~~Gvailsr~pi-~~~~v-~~~~---------~-------- 155 (360)
+...|.. .||..++... . .+..|+|||.|..- ..+.. .+.+ .
T Consensus 93 ------l~~~L~~---~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri 163 (398)
T 3ngq_A 93 ------FLPALKE---RGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRV 163 (398)
T ss_dssp ------HHHHHHH---TTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTT
T ss_pred ------HHHHHHh---CCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhcce
Confidence 1122211 5897665422 1 23679999988642 11110 0000 0
Q ss_pred ---CCcccEEEEEc-----------------CcEEEEEEEcCCCCCccchhhHHHHHHHHHHHHHHHHhc----------
Q 018111 156 ---KTDGRVILAEF-----------------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---------- 205 (360)
Q Consensus 156 ---~~~~r~l~v~~-----------------~~l~v~nvh~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~---------- 205 (360)
+..+.++.++. ..+.|+|+|+.+..... ..|..++..|.+.+.+.
T Consensus 164 ~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~-----~vRl~Q~~~Ll~~l~~~~~~~~~~~~~ 238 (398)
T 3ngq_A 164 MTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYS-----DVKLIQTMMFVSEVKNILEKASSRPGS 238 (398)
T ss_dssp TTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCH-----HHHHHHHHHHHHHHHHHHCC-------
T ss_pred eeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 01111222222 14999999998865432 13555555555555431
Q ss_pred -----CCCCEEEEccccccCccc
Q 018111 206 -----SGKPLIWCGDLNVSHEEI 223 (360)
Q Consensus 206 -----~~~p~Il~GDFN~~~~~~ 223 (360)
...|+|||||||+.|.+.
T Consensus 239 ~~~~~~~~PvIl~GDFNs~P~s~ 261 (398)
T 3ngq_A 239 PTADPNSIPLVLCADLNSLPDSG 261 (398)
T ss_dssp ------CCCEEEEEECSCCTTSH
T ss_pred ccccCCCCceEEEeeCCCCCCCH
Confidence 346999999999999874
No 25
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.80 E-value=1.1e-18 Score=159.64 Aligned_cols=166 Identities=12% Similarity=0.095 Sum_probs=91.9
Q ss_pred CCeEEEEEeCccchhhh-cCCchhHHHHHhh-cCCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 018111 40 DPLKFVTWNANSLLLRV-KNNWPEFSNFITT-FDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (360)
Q Consensus 40 ~~lrI~s~Ni~g~~~~~-~~~~~~l~~~i~~-~~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 117 (360)
..+||+||||+|..... .+....+..+|+. .+||||+|||+.......... +++.++.+.--.| + .-.|..
T Consensus 3 ~~~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~----~r~~~~~g~~v~e--~-~w~lg~ 75 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRT----SRVIQHGGTPIEE--Y-TWNLGT 75 (261)
T ss_dssp GGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEEC----SCCCCCSSSCCEE--E-EEESSC
T ss_pred cccEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccc----hhhhcccCCchhh--h-hhhccc
Confidence 46899999998753322 1111369999999 889999999997642211000 0110000000000 0 000000
Q ss_pred CCCCCceE-EEec--CCCCceeEEEEEeecCCCceeeccCC---CCcccEEEEEcCcEEEEEEEcCCCCCccchhhHHHH
Q 018111 118 PPFKNYQI-WWSL--ADSKYAGTALLVKKCFQPKKVSFSLE---KTDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 191 (360)
Q Consensus 118 ~~~~gy~~-~~~~--~~~~~~Gvailsr~pi~~~~v~~~~~---~~~~r~l~v~~~~l~v~nvh~~~~~~~~~~~~~~~r 191 (360)
.-.+++.+ |+.. ...+..|+||+||.++.... ..+.. ...+.++.+.++.+.|+++|+...... + +
T Consensus 76 ~~r~~~~yiy~~~~d~~~g~~g~AIlSR~~~~~v~-~l~~~~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~~-e------a 147 (261)
T 1sr4_B 76 RSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAF-IVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGGS-D------A 147 (261)
T ss_dssp SSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEE-EECCCCCSSCCCCEEEEEETTEEEEEEECCTTTTT-T------H
T ss_pred ccCCCceEEEEEeecCCCCccceEEEEccchhceE-EcCCCCCCCcCcceEEEEECCeEEEEeCCCCCCCc-h------H
Confidence 00123333 3322 12346699999999763221 11221 123447778888899999999888622 1 2
Q ss_pred HHHHHHHHHHHHhc---CC---CCEEEEccccccC
Q 018111 192 RKWDKRIQEFVLQC---SG---KPLIWCGDLNVSH 220 (360)
Q Consensus 192 ~~~l~~l~~~l~~~---~~---~p~Il~GDFN~~~ 220 (360)
..+...|.+++... +. .++||+||||..+
T Consensus 148 ~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p 182 (261)
T 1sr4_B 148 VSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAP 182 (261)
T ss_dssp HHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCH
T ss_pred HHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCCh
Confidence 33456677776443 34 7999999999864
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.78 E-value=9.3e-18 Score=154.29 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=82.2
Q ss_pred eEEEEEeCccchhhhcCCchhHHHHHhhc--CCCEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 018111 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF--DPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (360)
Q Consensus 42 lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~--~pDIi~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 119 (360)
|||+||||+++..... +...+++.|.+. +||||||||+..... ..+ +.+.++|....
T Consensus 1 lrv~s~NI~~~g~~~~-~~~~~~~~i~~~~~~~DIv~LQEv~~~~~---------~~~-----------~~l~~~L~~~~ 59 (260)
T 2a40_B 1 LKIAAFNIRTFGETKM-SNATLASYIVRIVRRYDIVLIQEVRDSHL---------VAV-----------GKLLDYLNQDD 59 (260)
T ss_dssp CEEEEEEEEEESHHHH-HSHHHHHHHHHHHTTCSEEEEEEECCTTS---------HHH-----------HHHHHHHTSSS
T ss_pred CEEEEEehhhhCCCcc-chHHHHHHHHHHhccCCEEEEEEEEcCch---------hHH-----------HHHHHHHHhcc
Confidence 6999999986532211 114455555553 899999999975421 011 23456665433
Q ss_pred CCCceEEEecCCC---CceeEEEEEeecCC-CceeeccCCC---------Ccc--cEEEEE-----cCcEEEEEEEcCCC
Q 018111 120 FKNYQIWWSLADS---KYAGTALLVKKCFQ-PKKVSFSLEK---------TDG--RVILAE-----FETFYLLNTYAPNN 179 (360)
Q Consensus 120 ~~gy~~~~~~~~~---~~~Gvailsr~pi~-~~~v~~~~~~---------~~~--r~l~v~-----~~~l~v~nvh~~~~ 179 (360)
..+|.++...... +..+++++.|.+.. ... ...+.. ..+ ++.... ...+.|+++|+.+.
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~-~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~ 138 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLD-TYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS 138 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEE-EEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCceeEecC-ceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCC
Confidence 3457766543221 23468999987631 111 111110 011 222332 23799999999855
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHh-cCCCCEEEEccccccCc
Q 018111 180 GWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHE 221 (360)
Q Consensus 180 ~~~~~~~~~~~r~~~l~~l~~~l~~-~~~~p~Il~GDFN~~~~ 221 (360)
... . ..+.+..+.+.+.+ ....|+|||||||+.+.
T Consensus 139 ~~~------~-q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 139 DAV------A-EINSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp GHH------H-HHHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred CcH------H-HHHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 421 1 12222222222222 35689999999999765
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.1e-19 Score=190.87 Aligned_cols=260 Identities=16% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCCeEEEEEeCccchh--------------hhcCCchhHHHHHhhcCCCEEEEeeeecCCC-CCCCCCccccccchhhhh
Q 018111 39 KDPLKFVTWNANSLLL--------------RVKNNWPEFSNFITTFDPDVIALQEVRMPAA-GSKDAPKNHQELKDDTKA 103 (360)
Q Consensus 39 ~~~lrI~s~Ni~g~~~--------------~~~~~~~~l~~~i~~~~pDIi~LQEv~~~~~-~~~~~~~~~~~l~~~~~~ 103 (360)
...+++++||+..... .+..|...|++.|+..+|||||||||..... .+ +.
T Consensus 392 ~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~---------l~----- 457 (727)
T 4b8c_D 392 KRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEY---------WV----- 457 (727)
T ss_dssp ----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTT---------TC-----
T ss_pred ccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHH---------HH-----
Confidence 3468999999964110 1222336799999999999999999975311 00 00
Q ss_pred hHHHHHHHHHhhCCCCCCCceEEEecC----------CCCceeEEEE---EeecCCCce-eecc-----------CCCCc
Q 018111 104 SREEKLILMRALSSPPFKNYQIWWSLA----------DSKYAGTALL---VKKCFQPKK-VSFS-----------LEKTD 158 (360)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~gy~~~~~~~----------~~~~~Gvail---sr~pi~~~~-v~~~-----------~~~~~ 158 (360)
..|. ..||..++... ..+..|+||| +|+++.... +.+. .++..
T Consensus 458 ---------~~l~---~~gY~~~~~~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (727)
T 4b8c_D 458 ---------PLLD---KHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTEDYL 525 (727)
T ss_dssp ---------C----------CEEC----------------CCCCEEEC--------------------------------
T ss_pred ---------HHHH---hCCccEEEeccCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhhcccHHHH
Confidence 0111 14776554211 2236799999 777763111 1110 00000
Q ss_pred c------c-EEEEE------cCcEEEEEEEcCCCCCccchhhHHHHHHHHHHHHHHHHhc-------------CCCCEEE
Q 018111 159 G------R-VILAE------FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-------------SGKPLIW 212 (360)
Q Consensus 159 ~------r-~l~v~------~~~l~v~nvh~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~-------------~~~p~Il 212 (360)
. + .+.+. ...+.|+|+|+.+.....+ .|..++..+.+.+.+. .+.|+||
T Consensus 526 ~r~~~~~~i~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~-----~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl 600 (727)
T 4b8c_D 526 NRAMNKDNVALFLKLQHIPSGDTIWAVTTHLHWDPKFND-----VKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLI 600 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccCCcEEEEEEEeecCCCceEEEEEeccccCCCCCc-----hHHHHHHHHHHHHHHHHHHhcccccccccCCCceEE
Confidence 0 1 11222 2368999999987543211 1333333333333321 3569999
Q ss_pred EccccccCccccCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccccCCCCCcceeccCCC
Q 018111 213 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 292 (360)
Q Consensus 213 ~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~r~~~~~~~~~~~~T~~~~~ 292 (360)
|||||+.|.+..+.... .+.+. ....+....+....... +.....+.++|.... . ..||.+.
T Consensus 601 ~GDFNs~P~s~~~~~l~-------~~~v~-~~~d~~~~~~~~~~~~~---~~~~~~l~say~~~~-~----~~~T~~~-- 662 (727)
T 4b8c_D 601 CGDFNSYINSAVYELIN-------TGRVQ-IHQEGNGRDFGYMSEKN---FSHNLALKSSYNCIG-E----LPFTNFT-- 662 (727)
T ss_dssp -----------------------------------------------------------------------CCCSBCC--
T ss_pred ecccCCCCCCcceEeee-------cCCcC-cchhhcccccccccccc---ccccccccchhhcCC-C----Ccccccc--
Confidence 99999999874322110 00000 00000000000000000 001112455554321 1 2355442
Q ss_pred CCcccCccceeEEEEeChhhhhhheeeEecc-------CccccCCCCCCCccceEEeeecCCCchhH
Q 018111 293 IGKYRGKRMRIDYFIVSEELKDRIIACEMQG-------HGIELEGFYGSDHCPVSLELSEASSDSEK 352 (360)
Q Consensus 293 ~~~~~~~~~rID~I~~s~~l~~~v~~~~i~~-------~~~~~~~~~~SDH~PV~v~l~~~~~~~~~ 352 (360)
.+...+|||||+|+..........+.. .+. ....++|||+||+++|.+.+..+..
T Consensus 663 ----~~~~~~LDyI~~S~~~l~~~~~~~~~~~~~~~~~~~~-P~~~~pSDH~pV~a~f~l~~~~~~~ 724 (727)
T 4b8c_D 663 ----PSFTDVIDYIWFSTHALRVRGLLGEVDPEYVSKFIGF-PNDKFPSDHIPLLARFEFMKTNTGS 724 (727)
T ss_dssp ----SSCCBCC-----------------CCCHHHHTTCSSS-SBTTBCSSBCC--------------
T ss_pred ----CccCCeeeeEEEcCCceeEeeccCCCCHHHhcccCCC-CCCCCCCCceeEEEEEEEecCCCCc
Confidence 122368999999987543222221211 011 1235789999999999998765544
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.54 E-value=1.3e-14 Score=135.46 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=78.0
Q ss_pred CCCCeEEEEEeCccchhhhcCCchhHHHHHh---hcCCCE--EEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 018111 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (360)
Q Consensus 38 ~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~---~~~pDI--i~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (360)
+.-.++|+||||++.... ..+.+|+. ..+||| |||||+....... .....+ .+.+.
T Consensus 5 ~~~~i~V~T~Nv~~~~~~-----~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~----~~~~~w----------~~~l~ 65 (282)
T 2imq_X 5 AQLSVHTVSWNSGHERAP-----TNLEELLGLNSGETPDVIAVAVQGFGFQTDKP----QQGPAC----------VKNFQ 65 (282)
T ss_dssp SEEEEEEEEEEEETCCCC-----SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTT----CCHHHH----------HHHHH
T ss_pred CCcEEEEEEEeCCCCcCc-----hhHHHHhcccccCCCCEEEEEeeeeccccccc----hhhHHH----------HHHHH
Confidence 445699999999765422 13445554 688996 5999997543210 000111 12233
Q ss_pred HhhCCCCCCCceEEEecCCCCcee--EEEEEeecCCCc-e-ee-ccCCC---Ccc-cEEEEEcC--cEEEEEEEcCCCCC
Q 018111 113 RALSSPPFKNYQIWWSLADSKYAG--TALLVKKCFQPK-K-VS-FSLEK---TDG-RVILAEFE--TFYLLNTYAPNNGW 181 (360)
Q Consensus 113 ~~l~~~~~~gy~~~~~~~~~~~~G--vailsr~pi~~~-~-v~-~~~~~---~~~-r~l~v~~~--~l~v~nvh~~~~~~ 181 (360)
+.|.. .+|..+... ..+..| ++|++|.++.+. + +. ..+.+ .-| ..+.+.+. .+.++|+|+.++..
T Consensus 66 ~~L~~---~~Y~~v~~~-~~~~~G~~l~vf~k~~~~~~i~~~~~~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~ 141 (282)
T 2imq_X 66 SLLTS---KGYTKLKNT-ITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDV 141 (282)
T ss_dssp HHHHH---TTEEEEEEE-ECSSEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCC
T ss_pred HhcCC---CceEEEEec-cCceeEEEEEEEEccccCccceeeeeccccccccCCceEEEEEEECCEEEEEEEECCCCCCc
Confidence 44421 245444331 123334 556667765211 1 11 11111 112 12233333 69999999999843
Q ss_pred ccchhhHHHHHHHHHHHHHHHHh-cCCCCEEEEccccccCc
Q 018111 182 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHE 221 (360)
Q Consensus 182 ~~~~~~~~~r~~~l~~l~~~l~~-~~~~p~Il~GDFN~~~~ 221 (360)
...+ |.+.++.|.+.+.. ....++|+|||||...+
T Consensus 142 ~~~~-----R~~~~~~I~~~~~~~~~~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 142 TSTN-----TKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp CTTS-----SSSSCCGGGCTTSSSSCCSEEEEEEECSCCBC
T ss_pred hHHH-----HHHHHHHHHHhhhccCccceEEEecccccccC
Confidence 2110 11112233333322 24568999999997654
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.47 E-value=1.1e-12 Score=125.53 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=86.2
Q ss_pred CCeEEEEEeCccchhhhcCCchhHHHHHhh---cCCCE--EEEeeeec-CCCCCCC-CCccccccchhhhhhHHHHHHHH
Q 018111 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITT---FDPDV--IALQEVRM-PAAGSKD-APKNHQELKDDTKASREEKLILM 112 (360)
Q Consensus 40 ~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~---~~pDI--i~LQEv~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 112 (360)
-.+.|+||||+|... . ..+.++|.. ..||| |||||+.. ....+.. .+.....| .+.+.
T Consensus 25 ~~i~v~TwNv~g~~~--~---~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w----------~~~i~ 89 (347)
T 1i9z_A 25 VKIFVASYNLNGCSA--T---TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW----------ESCVK 89 (347)
T ss_dssp EEEEEEEEECTTCCC--C---SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHH----------HHHHH
T ss_pred cEEEEEeEecCCCCC--c---hhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHH----------HHHHH
Confidence 468999999988754 1 358888884 68999 89999843 2211110 00000011 12334
Q ss_pred HhhCCC--CCCCceEEEecCCCCceeEEEEEeecCCCc--eee-----ccCCC--CcccEEEE--EcC--cEEEEEEEcC
Q 018111 113 RALSSP--PFKNYQIWWSLADSKYAGTALLVKKCFQPK--KVS-----FSLEK--TDGRVILA--EFE--TFYLLNTYAP 177 (360)
Q Consensus 113 ~~l~~~--~~~gy~~~~~~~~~~~~Gvailsr~pi~~~--~v~-----~~~~~--~~~r~l~v--~~~--~l~v~nvh~~ 177 (360)
++|... ...+|..+... ..++.+++||+|.++.+. .+. .++.+ .....+.+ .+. .+.++|+|+.
T Consensus 90 ~~L~~~~~~~~~Y~~v~s~-~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLa 168 (347)
T 1i9z_A 90 RLLNGKCTSGPGYVQLRSG-QLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLA 168 (347)
T ss_dssp HHHHHTCCSSCCEEEEEEE-EETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECC
T ss_pred HHHhhcccCCCceeEEEEe-eccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCC
Confidence 455321 11345443322 222457899999987421 111 22221 11122333 333 6999999999
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHh------cCCCCEEEEccccccC
Q 018111 178 NNGWKEEENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNVSH 220 (360)
Q Consensus 178 ~~~~~~~~~~~~~r~~~l~~l~~~l~~------~~~~p~Il~GDFN~~~ 220 (360)
++... ..+|.+....|.+.+.- ....++|+|||||...
T Consensus 169 a~~~~-----~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi 212 (347)
T 1i9z_A 169 AGYTN-----YDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRI 212 (347)
T ss_dssp CCSSC-----HHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCB
T ss_pred CCCcc-----HHHHHHHHHHHHHhhccCcccccccCccEEEeccccccc
Confidence 88754 22354445555544320 1346899999999543
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.24 E-value=4.5e-11 Score=114.70 Aligned_cols=150 Identities=18% Similarity=0.207 Sum_probs=84.5
Q ss_pred CCCeEEEEEeCccchhhhcCCchhHHHHHh----hcCCCE--EEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 018111 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFIT----TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (360)
Q Consensus 39 ~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~----~~~pDI--i~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (360)
.-.+.|+||||+|..... ..+.+++. ...||| |+|||+.... ..|. +.+.
T Consensus 25 ~l~i~v~TwNv~g~~~~~----~~L~~~l~~~~~~~~pDI~viGlQEi~~~~----------~~W~----------~~l~ 80 (357)
T 2xsw_A 25 NVALFVATWNMQGQKELP----PSLDEFLLPAEADYAQDLYVIGVQEGCSDR----------REWE----------TRLQ 80 (357)
T ss_dssp EEEEEEEEEECTTCSSCC----SCCHHHHSCTTCCSCCSEEEEEEESCCSCH----------HHHH----------HHHH
T ss_pred CceEEEEEEecCCCCCCc----ccHHHHhccccccCCCCEEEEEeeeccchH----------HHHH----------HHHH
Confidence 345899999999754222 24555654 357996 8899996431 1222 2234
Q ss_pred HhhCCCCCCCceEEEecCCCCceeEEEEEeecCCC----ceee---ccCCCCcc--cEEEE--EcC--cEEEEEEEcCCC
Q 018111 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQP----KKVS---FSLEKTDG--RVILA--EFE--TFYLLNTYAPNN 179 (360)
Q Consensus 113 ~~l~~~~~~gy~~~~~~~~~~~~Gvailsr~pi~~----~~v~---~~~~~~~~--r~l~v--~~~--~l~v~nvh~~~~ 179 (360)
+.|. .+|..+.. ..-+..+++||+|.++.+ +++. ..+.+..| ..+.+ .+. .+.++|+|+.++
T Consensus 81 ~~L~----~~Y~~v~s-~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~ 155 (357)
T 2xsw_A 81 ETLG----PHYVLLSS-AAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSG 155 (357)
T ss_dssp HHHC----TTEEEEEE-EEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHhC----Ccccchhh-hhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCC
Confidence 4553 45644433 222345789999998631 1111 11111111 12333 333 699999999998
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHh------------------cCCCCEEEEccccccCcc
Q 018111 180 GWKEEENSFQRRRKWDKRIQEFVLQ------------------CSGKPLIWCGDLNVSHEE 222 (360)
Q Consensus 180 ~~~~~~~~~~~r~~~l~~l~~~l~~------------------~~~~p~Il~GDFN~~~~~ 222 (360)
... ..+|.+....|.+.+.- .....+|++||||...+.
T Consensus 156 ~~~-----~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 156 DGK-----VAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp TTC-----HHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred Cch-----HHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCccccc
Confidence 753 23454445555554421 023689999999986553
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.10 E-value=1.7e-09 Score=101.38 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=83.1
Q ss_pred CeEEEEEeCccchhhhcCCchhHHHHHhh--cCCC--EEEEeeeecCCCCC-CCCCccccccchhhhhhHHHHHHHHHhh
Q 018111 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT--FDPD--VIALQEVRMPAAGS-KDAPKNHQELKDDTKASREEKLILMRAL 115 (360)
Q Consensus 41 ~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~--~~pD--Ii~LQEv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l 115 (360)
.+.|+||||+|.... ..+.+||.. ..|| ||+|||+....... ...+.....| .+.+.++|
T Consensus 9 ~i~v~TwNvng~~~~-----~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W----------~~~i~~~L 73 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPK-----ECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEW----------FKAVSEGL 73 (313)
T ss_dssp EEEEEEEECTTCCCC-----SCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHH----------HHHHHHHS
T ss_pred EEEEEEEEcCCccCc-----hhHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHH----------HHHHHHhc
Confidence 467899999988542 358888885 6799 79999995432110 0000000122 23344566
Q ss_pred CCCCCCCceEEEecCCCCceeEEEEEeecCCCc----e---eeccCCC---Cccc-EEEEEcC--cEEEEEEEcCCCCCc
Q 018111 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK----K---VSFSLEK---TDGR-VILAEFE--TFYLLNTYAPNNGWK 182 (360)
Q Consensus 116 ~~~~~~gy~~~~~~~~~~~~Gvailsr~pi~~~----~---v~~~~~~---~~~r-~l~v~~~--~l~v~nvh~~~~~~~ 182 (360)
.. ...|..+.+....| --+.|++|..+.+- + +..++.+ .-|. .+...+. .+.++|+|+.++...
T Consensus 74 ~~--~~~Y~~v~s~~lvG-l~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~ 150 (313)
T 3mtc_A 74 HP--DAKYAKVKLIRLVG-IMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE 150 (313)
T ss_dssp CT--TSCEEEEEEEEETT-EEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred CC--CCCEEEEEEechhh-hhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchH
Confidence 42 13465443321112 23568888765211 1 1112211 1121 2333333 699999999988743
Q ss_pred cchhhHHHHHHHHHHHHHHHHhc------------CCCCEEEEccccccCc
Q 018111 183 EEENSFQRRRKWDKRIQEFVLQC------------SGKPLIWCGDLNVSHE 221 (360)
Q Consensus 183 ~~~~~~~~r~~~l~~l~~~l~~~------------~~~p~Il~GDFN~~~~ 221 (360)
..+|.+-...|...+.-. ....++++||||-...
T Consensus 151 -----~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 151 -----YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp -----HHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred -----HHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 334444444444433210 1234899999997554
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.81 E-value=8.2e-08 Score=90.14 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=79.8
Q ss_pred CCeEEEEEeCccchhhhcCCchhHHHHHhh-------------cCCCEE--EEeeeecCCCCCCCCCccccccchhhhhh
Q 018111 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITT-------------FDPDVI--ALQEVRMPAAGSKDAPKNHQELKDDTKAS 104 (360)
Q Consensus 40 ~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~-------------~~pDIi--~LQEv~~~~~~~~~~~~~~~~l~~~~~~~ 104 (360)
-.+-|+|||++|.... ..|.+||.- ..|||+ +|||..... ..|.+
T Consensus 8 i~i~vgTwNv~g~~p~-----~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~----------~~W~~----- 67 (316)
T 4a9c_A 8 ISVFIGTWNMGSVPPP-----KNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGD----------REWLD----- 67 (316)
T ss_dssp EEEEEEEEECTTSCCC-----SCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCH----------HHHHH-----
T ss_pred EEEEEEEeEcCCcCCC-----cchhHhhcccccccCcccccccCCCcEEEEeccccccch----------hHHHH-----
Confidence 3578999999876422 357777752 347987 999984321 13322
Q ss_pred HHHHHHHHHhhCCCCCCCceEEEecCCCCceeEEEEEeecCCCc--ee-----eccCCC---Cccc-EEEEEcC--cEEE
Q 018111 105 REEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK--KV-----SFSLEK---TDGR-VILAEFE--TFYL 171 (360)
Q Consensus 105 ~~~~~~~~~~l~~~~~~gy~~~~~~~~~~~~Gvailsr~pi~~~--~v-----~~~~~~---~~~r-~l~v~~~--~l~v 171 (360)
.+.+.|.......|..+... .-+.-.++||+|..+.+- .+ ...+.+ .-|. .+...+. .+.+
T Consensus 68 -----~i~~~L~~~~~~~Y~~v~s~-~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~F 141 (316)
T 4a9c_A 68 -----LLRGGLKELTDLDYRPIAMQ-SLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGF 141 (316)
T ss_dssp -----HHHHHHHHHHSCCCEEEEEE-EETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEE
T ss_pred -----HHHHHhccccCCCEEEEEee-eehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEE
Confidence 22334432111356555432 122346789999875321 11 112211 1122 2233333 7999
Q ss_pred EEEEcCCCCCccchhhHHHHHHHHHHHHHHHH-------hc----CCCCEEEEccccccCc
Q 018111 172 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL-------QC----SGKPLIWCGDLNVSHE 221 (360)
Q Consensus 172 ~nvh~~~~~~~~~~~~~~~r~~~l~~l~~~l~-------~~----~~~p~Il~GDFN~~~~ 221 (360)
+|.|+.++... ..+|.+-...|...+. .. .-..++++||||-..+
T Consensus 142 Vn~HLaAg~~~-----~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi~ 197 (316)
T 4a9c_A 142 VNCHLTSGNEK-----TARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLD 197 (316)
T ss_dssp EEEECCCSTTC-----HHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCBS
T ss_pred EEeccccCchH-----HHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCcC
Confidence 99999988754 3334333444443321 00 1135899999998553
No 33
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=29.08 E-value=29 Score=30.91 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=17.9
Q ss_pred hhHHHHHh---hcCCCEEEEeeeecCCC
Q 018111 61 PEFSNFIT---TFDPDVIALQEVRMPAA 85 (360)
Q Consensus 61 ~~l~~~i~---~~~pDIi~LQEv~~~~~ 85 (360)
..+.++++ ..++|+|+|.|+.....
T Consensus 40 ~~~~~~i~~A~~~gadlvvfPE~~l~gy 67 (281)
T 3p8k_A 40 TQITQWFEKNMNAEVDVVVLPEMWNNGY 67 (281)
T ss_dssp HHHHHHHHHHCCTTCCEEECCSSTTTTT
T ss_pred HHHHHHHHHHHhCCCcEEEcCCCccCCC
Confidence 34555555 46899999999976643
No 34
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=23.26 E-value=39 Score=30.13 Aligned_cols=24 Identities=4% Similarity=-0.086 Sum_probs=17.2
Q ss_pred hhHHHHHh---hcCCCEEEEeeeecCC
Q 018111 61 PEFSNFIT---TFDPDVIALQEVRMPA 84 (360)
Q Consensus 61 ~~l~~~i~---~~~pDIi~LQEv~~~~ 84 (360)
..+.++++ ..++|+|+|+|+....
T Consensus 40 ~~~~~~i~~A~~~gadlvvfPE~~l~g 66 (283)
T 3hkx_A 40 DLIDDAAARASEQGAQLLLTPELFGFG 66 (283)
T ss_dssp HHHHHHHHHHHHTTCSEEECCTTGGGC
T ss_pred HHHHHHHHHHHHCCCCEEEcCCCcccC
Confidence 34555554 4689999999997654
No 35
>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ...
Probab=21.51 E-value=27 Score=22.43 Aligned_cols=9 Identities=56% Similarity=0.829 Sum_probs=5.8
Q ss_pred Ccccccccc
Q 018111 1 MKRFFKPIE 9 (360)
Q Consensus 1 ~~~~~~~~~ 9 (360)
||++|||..
T Consensus 1 mKrTyQPs~ 9 (46)
T 3r8s_2 1 MKRTFQPSV 9 (46)
T ss_dssp CCCSCCCCH
T ss_pred CCCCCCCCc
Confidence 666776654
Done!