Query 018112
Match_columns 360
No_of_seqs 308 out of 1598
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2058 Ypt/Rab GTPase activat 100.0 2.8E-53 6E-58 406.1 24.7 289 33-342 87-390 (436)
2 KOG2223 Uncharacterized conser 100.0 5.1E-44 1.1E-48 332.3 14.1 323 1-341 198-545 (586)
3 smart00164 TBC Domain in Tre-2 100.0 2.7E-43 5.9E-48 313.0 17.2 191 114-305 2-195 (199)
4 KOG2222 Uncharacterized conser 100.0 3.4E-40 7.3E-45 309.7 16.0 244 103-349 156-414 (848)
5 COG5210 GTPase-activating prot 100.0 5.4E-39 1.2E-43 322.0 21.5 235 103-338 199-446 (496)
6 KOG4347 GTPase-activating prot 100.0 5.7E-37 1.2E-41 298.8 18.8 279 37-345 149-435 (671)
7 PF00566 RabGAP-TBC: Rab-GTPas 100.0 4.1E-35 8.8E-40 262.8 16.4 198 119-317 1-211 (214)
8 KOG2221 PDZ-domain interacting 100.0 1.3E-36 2.7E-41 260.6 5.0 224 32-283 42-267 (267)
9 KOG1092 Ypt/Rab-specific GTPas 100.0 3.4E-35 7.5E-40 273.4 13.3 245 103-350 175-470 (484)
10 KOG4567 GTPase-activating prot 100.0 2.3E-34 4.9E-39 258.9 14.7 232 104-337 23-347 (370)
11 KOG2224 Uncharacterized conser 100.0 6.2E-30 1.3E-34 238.4 13.9 249 102-353 420-729 (781)
12 KOG4436 Predicted GTPase activ 100.0 2.1E-29 4.6E-34 249.6 17.8 244 103-351 564-824 (948)
13 KOG1093 Predicted protein kina 100.0 7E-29 1.5E-33 238.7 14.8 224 105-336 344-576 (725)
14 KOG1102 Rab6 GTPase activator 100.0 3.8E-28 8.3E-33 235.6 14.4 229 104-338 133-371 (397)
15 KOG2197 Ypt/Rab-specific GTPas 99.9 3.2E-22 6.9E-27 197.9 9.5 230 107-338 167-428 (488)
16 KOG1091 Ypt/Rab-specific GTPas 99.9 7.5E-22 1.6E-26 190.3 9.7 184 158-341 104-352 (625)
17 KOG2595 Predicted GTPase activ 99.8 5.3E-21 1.1E-25 174.6 10.1 218 105-335 47-280 (395)
18 KOG4436 Predicted GTPase activ 99.8 1E-18 2.2E-23 174.2 11.4 226 103-329 171-415 (948)
19 KOG3636 Uncharacterized conser 99.4 1.2E-12 2.6E-17 123.8 11.4 208 116-342 36-259 (669)
20 KOG2801 Probable Rab-GAPs [Int 99.0 4.3E-09 9.3E-14 95.4 11.8 209 105-315 31-251 (559)
21 KOG1648 Uncharacterized conser 98.4 1.8E-08 3.9E-13 96.9 -3.4 237 105-355 547-804 (813)
22 KOG2224 Uncharacterized conser 96.1 0.0016 3.5E-08 62.4 0.4 35 199-233 566-600 (781)
23 PF14961 BROMI: Broad-minded p 95.9 0.057 1.2E-06 58.5 10.7 136 185-321 1086-1245(1296)
24 PF10815 ComZ: ComZ; InterPro 74.1 4.1 8.8E-05 27.6 2.8 40 252-291 5-44 (56)
25 KOG2197 Ypt/Rab-specific GTPas 40.4 10 0.00022 38.4 0.3 32 107-138 68-99 (488)
26 KOG1102 Rab6 GTPase activator 37.9 4.2 9.2E-05 40.0 -2.8 112 161-304 2-113 (397)
27 TIGR02433 lysidine_TilS_C tRNA 33.4 6.9 0.00015 25.5 -1.5 24 105-128 19-43 (47)
28 PF12829 Mhr1: Transcriptional 27.4 16 0.00035 27.9 -0.5 47 104-150 25-74 (91)
29 PF08109 Antimicrobial14: Lact 24.0 61 0.0013 18.6 1.5 15 199-213 3-17 (31)
30 PF13041 PPR_2: PPR repeat fam 22.5 1.1E+02 0.0024 19.7 2.9 26 263-288 24-49 (50)
No 1
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-53 Score=406.07 Aligned_cols=289 Identities=37% Similarity=0.558 Sum_probs=239.1
Q ss_pred ccccccccCCcccCCcCc-h---hHHHHHHHHHHHhhHHHHHHHHhccCCccccccccchhhhhhhhhcccccCCCCHHH
Q 018112 33 TVKFQDLYGFTVEGNVDD-V---NVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAIT 108 (360)
Q Consensus 33 ~~~~~D~yGF~~~~~~~~-~---~~~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 108 (360)
....+|+|||........ . ..+....+....++.+|..++.++ .+|.. + ...+..+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~r~~~~~~l~~~~~-~~~~~-~----------------~~~~~~s~e 148 (436)
T KOG2058|consen 87 KNNGFDQYSLQKLIGLPPSDGYLKWLSSYLAYEERRQLRWELELQSN-IKLHS-P----------------NDFPPRSDE 148 (436)
T ss_pred ccCcccccchhhcccCCcchhhhHHHHHhhhhhhhHHHHHHHHhhhh-hcccc-c----------------ccccCCcHH
Confidence 345689999886443333 1 112222223334445787776655 55543 1 112357899
Q ss_pred HHHHHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCC-CCCCChh--hHHHH
Q 018112 109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGH-PWLDTPD--GHATL 185 (360)
Q Consensus 109 lk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~-~~f~~~~--~~~~L 185 (360)
+|+++|+|||+++|+.||..++|....... .++|++++.....+.++..+||+.|++||||++ +.|..++ +++.|
T Consensus 149 lk~liRkGiP~~~R~~VW~~~~g~~~~~~~--~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~L 226 (436)
T KOG2058|consen 149 LKRLIRKGIPPELRGEVWWVLSGARRQLNY--PGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTL 226 (436)
T ss_pred HHHHHHcCCChhhhhHHHHHHhcchhhccC--chhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHH
Confidence 999999999999999999999994433322 468999887766556689999999999999999 7888765 48999
Q ss_pred HHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHH
Q 018112 186 RRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIA 265 (360)
Q Consensus 186 ~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~ 265 (360)
+|||.||+.+||+||||||||++||++|++|++||+|||||+.++++++|. ||++++.|.++++.+|+.+++..+|+|+
T Consensus 227 rRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~ 305 (436)
T KOG2058|consen 227 RRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKLS 305 (436)
T ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHHH
Confidence 999999999999999999999999999999977999999999999999865 9999999999999999999999999999
Q ss_pred hhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHHHH-HHhcCCCchhhHHHHHhhcccC
Q 018112 266 SHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTKYT-ELAGGCTVTEKSVLCLHQFSDN 337 (360)
Q Consensus 266 ~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~~~-e~~l~~~~~e~~~~~l~~l~~~ 337 (360)
.||..++++.++++++||+|+|++.+|.++++||||+++ |.+++|+++.. +.++.+.+.......+..++..
T Consensus 306 ~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~ 385 (436)
T KOG2058|consen 306 LHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTKR 385 (436)
T ss_pred HhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874 44899998888 7777889999999999888877
Q ss_pred ccccc
Q 018112 338 SASVG 342 (360)
Q Consensus 338 ~~~~~ 342 (360)
+...+
T Consensus 386 ~~~~~ 390 (436)
T KOG2058|consen 386 SIDPD 390 (436)
T ss_pred hhhhh
Confidence 75554
No 2
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.1e-44 Score=332.30 Aligned_cols=323 Identities=23% Similarity=0.313 Sum_probs=251.8
Q ss_pred CCCCCCccchhhhhcccCCccCCc-hhhhccccccccccccCCcccCCc-CchhHHHHHHHHHHHhhHHHHHHHHhccCC
Q 018112 1 MYGTQSKRDLALELQAQIPFLRPS-IHARRANITVKFQDLYGFTVEGNV-DDVNVLNEVREKVREQGRVWWALEASKGAN 78 (360)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~yGF~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 78 (360)
|||.+||-+|.+++++.|.+.+|| .+++.+....++...|-=++++-. .+.....+.++..+++. +-.+..+....-
T Consensus 198 lfgkrnkQsgflattaliledRPS~LPaKsaeEa~kHrqeyeei~~qAkkre~k~~ker~k~~eer~-r~ee~~~~~v~v 276 (586)
T KOG2223|consen 198 LFGKRNKQSGFLATTALILEDRPSNLPAKSAEEAKKHRQEYEEIVKQAKKRERKEAKERKKMVEERN-RLEERIAYAVNV 276 (586)
T ss_pred hhcccccccchhhhhhhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Confidence 799999999999999999999999 578888888888777753332100 00000000000001110 000001111123
Q ss_pred ccccccccchhhhhhhhhcccccCCCCHHHHHHHHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHH---------
Q 018112 79 WYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTK--------- 149 (360)
Q Consensus 79 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~--------- 149 (360)
|.+. .+ .+|+.+.++.+++.++|.|||+.+||+||....|..-.. ..+.|...+.
T Consensus 277 W~~e----------IL---pnWe~m~~SrR~relWwQGiP~~VRGkvW~laIGNel~i---t~elfd~~la~Aker~ak~ 340 (586)
T KOG2223|consen 277 WENE----------IL---PNWEDMLKSRRVRELWWQGIPPSVRGKVWSLAIGNELNI---TYELFDIALARAKEREAKS 340 (586)
T ss_pred HHHH----------hc---cchHHHHhhHHHHHHHHccCChhhcchhhHhhhCccccc---CHHHHHHHHHHHHHHHHHH
Confidence 4221 11 145556789999999999999999999999999975432 1233433322
Q ss_pred ---Hhc---CCCCcchhhHhhccCCCCCCCCCCCChh-hHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHH
Q 018112 150 ---AVE---GKVTPATKQIDHDLPRTFPGHPWLDTPD-GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDA 222 (360)
Q Consensus 150 ---~~~---~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~-~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~a 222 (360)
+.. ........+|+.|+.||||+..+|+.+. ..+.|..+|.||+.|.|++||+|||++|||+||+.| ++.+|
T Consensus 341 ~aeq~~~sa~~re~sv~~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~A 419 (586)
T KOG2223|consen 341 LAEQMSNSAADREASVELIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADA 419 (586)
T ss_pred HHhhcccchhhhhcchhheeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHH
Confidence 211 1112456789999999999999998754 489999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHH
Q 018112 223 FWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITY 302 (360)
Q Consensus 223 F~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~ 302 (360)
|.||.+|+++.....+|..+.+.+...+..|+..+++.+|+|+.||+++++.|.+|...|+.++|+.++|++.+.||||+
T Consensus 420 FiafANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDv 499 (586)
T KOG2223|consen 420 FIAFANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDV 499 (586)
T ss_pred HHHHHHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhhe
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred H-------HHHHHHHHHHHHHHhcCCCchhhHHHHHhhcccCcccc
Q 018112 303 H-------LVFISIACTKYTELAGGCTVTEKSVLCLHQFSDNSASV 341 (360)
Q Consensus 303 ~-------L~~i~lail~~~e~~l~~~~~e~~~~~l~~l~~~~~~~ 341 (360)
+ ||..+++|+++.+..+..+++..+..+|..+++.+...
T Consensus 500 y~rdgeeFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~dL~~e 545 (586)
T KOG2223|consen 500 YCRDGEEFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPEDLTPE 545 (586)
T ss_pred eeecchHHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCcccCCHH
Confidence 4 67899999999999999999999999999999877433
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=2.7e-43 Score=313.04 Aligned_cols=191 Identities=39% Similarity=0.671 Sum_probs=173.7
Q ss_pred HcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCCh--hhHHHHHHHHHH
Q 018112 114 RKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGHATLRRVLVG 191 (360)
Q Consensus 114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~--~~~~~L~rIL~a 191 (360)
++|||+++|+.+|+.++|+.....+.....|+++.+.....+....++|++||+||+|++++|+.+ .+++.|+|||.+
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~ 81 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKA 81 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCChhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHH
Confidence 689999999999999999988754433567998887765444445789999999999999999864 479999999999
Q ss_pred hhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHHhhHHh-
Q 018112 192 YSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEA- 270 (360)
Q Consensus 192 y~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~- 270 (360)
|+.+||++||||||++|||++|.++++|++|||||+++++++. ..+|.++++++...+..++.++++++|+||+||++
T Consensus 82 ~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~ 160 (199)
T smart00164 82 YALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYG-PNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDK 160 (199)
T ss_pred HHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-cccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHh
Confidence 9999999999999999999999999889999999999999987 47788899999999999999999999999999996
Q ss_pred cCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHHH
Q 018112 271 LDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLV 305 (360)
Q Consensus 271 ~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L~ 305 (360)
.|+++.+|+.+||+|+|++++|++.+.||||.+++
T Consensus 161 ~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~ 195 (199)
T smart00164 161 LGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFA 195 (199)
T ss_pred cCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998875
No 4
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.4e-40 Score=309.74 Aligned_cols=244 Identities=29% Similarity=0.524 Sum_probs=211.0
Q ss_pred CCCHHHHHHHHHcC-CCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCCh--
Q 018112 103 LANAITLKKLIRKG-IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP-- 179 (360)
Q Consensus 103 ~~~~~klk~~~~~G-IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~-- 179 (360)
..+.++++.+++.| ||.++|+..|+.|+|+..++... +..|++.++++.+......+||++|+-|+.|++..|..+
T Consensus 156 ~~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~a-e~sy~~ilk~~andk~~~~~qiekdllr~lpnn~cf~k~n~ 234 (848)
T KOG2222|consen 156 ELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDA-ETSYEDILKACANDKLMIGKQIEKDLLRILPNNACFSKKNG 234 (848)
T ss_pred ccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhccc-cccHHHHHHHhcccccchhHHHHHHHHHhCCCcceeeCCCC
Confidence 45789999999865 99999999999999998876654 467999999998888889999999999999999999875
Q ss_pred hhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHh
Q 018112 180 DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVK 259 (360)
Q Consensus 180 ~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~ 259 (360)
.|.+.|+|||++.+...|++||||||.-|+|.||+++ .||.|||++.++++.++|.+||+..+-|++.+.++...+++.
T Consensus 235 ~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~-~ee~afwmmaaiiedilp~nfysqtllgiqaderv~~~li~~ 313 (848)
T KOG2222|consen 235 EGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFC-EEENAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLIAC 313 (848)
T ss_pred cchHHHHHHHhhheeecCCcccccCccHHHHHHHHHh-cchhHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHHHh
Confidence 5699999999999999999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred hCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHHHHHHhcC--C---CchhhH
Q 018112 260 QCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTKYTELAGG--C---TVTEKS 327 (360)
Q Consensus 260 ~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~~~e~~l~--~---~~~e~~ 327 (360)
+.|+|-+.|+.++|+.++.+..||+|+|+..+-....+||||+|+ |.+.++++++.|..+. . .+..++
T Consensus 314 ~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i~ilkmkeqdi~~iaettensa~i 393 (848)
T KOG2222|consen 314 HLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLIIGILKMKEQDIKEIAETTENSADI 393 (848)
T ss_pred ccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHHHHHHhhHHHHHHHHHhcccHHHH
Confidence 999999999999999999999999999999999999999999884 6688888998866552 2 333444
Q ss_pred HHHHhhcccCcccccchHHhhh
Q 018112 328 VLCLHQFSDNSASVGCPILRRS 349 (360)
Q Consensus 328 ~~~l~~l~~~~~~~~~~i~~~~ 349 (360)
...|.+++... .+.+.+.++|
T Consensus 394 f~als~ip~~v-tdve~l~~~~ 414 (848)
T KOG2222|consen 394 FNALSDIPAEV-TDVEKLFEQA 414 (848)
T ss_pred HHHHHhCCchh-hhHHHHHHHH
Confidence 44444444332 2334455554
No 5
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=5.4e-39 Score=321.96 Aligned_cols=235 Identities=34% Similarity=0.502 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhc-CCCCc--chhhHhhccCCCCCCCCCCCCh
Q 018112 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVE-GKVTP--ATKQIDHDLPRTFPGHPWLDTP 179 (360)
Q Consensus 103 ~~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~-~~~~~--~~~qI~~Dv~Rt~~~~~~f~~~ 179 (360)
.....+++.++++|||+++|+.+|..++|+.......+ ..|..+..... ..... ..++|++||.||+|.+..|+.+
T Consensus 199 ~~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~i~~Dl~rt~~~~~~f~~~ 277 (496)
T COG5210 199 PVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNP-GLYERLLNLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTE 277 (496)
T ss_pred hhhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCc-hHHHHHHHHHHhcCCCcHHHHHHHHccccccccccccccCc
Confidence 35789999999999999999999999999987766544 55666655332 22233 6899999999999999999988
Q ss_pred hhHHH--HHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHH
Q 018112 180 DGHAT--LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL 257 (360)
Q Consensus 180 ~~~~~--L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL 257 (360)
.++.. |+|||.||+.+||++|||||||+|||+||.+|++|++|||||++||+.+.++++|..+++|++.++.++..++
T Consensus 278 ~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v 357 (496)
T COG5210 278 ISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLV 357 (496)
T ss_pred ccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHH
Confidence 77666 9999999999999999999999999999999966999999999999977679999999999999999999999
Q ss_pred HhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHHHHHHh-cCCCchhhHHH
Q 018112 258 VKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTKYTELA-GGCTVTEKSVL 329 (360)
Q Consensus 258 ~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~~~e~~-l~~~~~e~~~~ 329 (360)
+..+|++|+||...|+...+|+++||+|+|++.+|++.++||||+++ +.+++|++...+.. +.+...+....
T Consensus 358 ~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~ 437 (496)
T COG5210 358 EELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDL 437 (496)
T ss_pred HHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhccCchhHHHH
Confidence 99999999999999999999999999999999999999999999775 44777776666444 45555666666
Q ss_pred HHhhcccCc
Q 018112 330 CLHQFSDNS 338 (360)
Q Consensus 330 ~l~~l~~~~ 338 (360)
++.++....
T Consensus 438 ~~~~~~~~~ 446 (496)
T COG5210 438 LLKQLFLHS 446 (496)
T ss_pred HHHhhhhhh
Confidence 665554443
No 6
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=100.00 E-value=5.7e-37 Score=298.80 Aligned_cols=279 Identities=32% Similarity=0.544 Sum_probs=240.0
Q ss_pred ccccCCcccCCcCchhHHHHHHHHHHHhhHHHHHHHHhccCCccccccccchhhhhhhhhcccccCCCCHHHHHHHHHcC
Q 018112 37 QDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKG 116 (360)
Q Consensus 37 ~D~yGF~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~klk~~~~~G 116 (360)
.+.+||......+..... .++ +.+++.|.+.....|++ .++ ....+++++++.|
T Consensus 149 ~~~~~~~~~~~~~~d~~~--lre--~~k~k~W~~~f~~~G~~-------------~~~---------~qt~~~~Klv~~g 202 (671)
T KOG4347|consen 149 ESALGFGEKGKYKIDPRA--LRE--WAKEKFWKKYFIKDGPN-------------MNQ---------IQTILLRKLLYNG 202 (671)
T ss_pred cchhcccccCCCCCChHH--HHH--HHHHHHHHHHHHHhccc-------------ccH---------HHHHHHHHHHHHh
Confidence 678888754443333222 222 33344677765444432 222 2678999999999
Q ss_pred CCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhccC
Q 018112 117 IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRD 196 (360)
Q Consensus 117 IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~rIL~ay~~~~ 196 (360)
||...|+++|..++|+......++ ++|.++++...++.+-..+.|++|++|..|.|+-|+++.|...|+|||.||++.|
T Consensus 203 ipe~~rgeiW~l~sGav~~~l~~~-Geygkll~~~~G~~~~a~eEIE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~N 281 (671)
T KOG4347|consen 203 FPEDPRGEIWYLASGAVASLLLNP-GEYGKLLHSVTGKRSVATEEIEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSN 281 (671)
T ss_pred cCCChHHHHHHhhhHHHHHhhcCc-HHhhhhhhcccCCcccccccccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccC
Confidence 999999999999999887777665 6899999988887888899999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHHhhHHhcCCCcc
Q 018112 197 SDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVS 276 (360)
Q Consensus 197 p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~ 276 (360)
|+|||||.||.+++.+|+++ .||+|||+++.+++.+. ++||+....|...++.+|+.+++.++|.|++|+..+| ...
T Consensus 282 p~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~i-p~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~ 358 (671)
T KOG4347|consen 282 PEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYI-PDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLS 358 (671)
T ss_pred CchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhc-ccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccc
Confidence 99999999999999999999 79999999999999987 8999999999999999999999999999999999999 689
Q ss_pred hhhhHHHHHhcCCCCChHHHHHHHHHH-------HHHHHHHHHHHH-HHhcCCCchhhHHHHHhhcccCcccccchH
Q 018112 277 LVATEWFLCLFSKSLPSEVRQILITYH-------LVFISIACTKYT-ELAGGCTVTEKSVLCLHQFSDNSASVGCPI 345 (360)
Q Consensus 277 ~~~~~WfltlF~~~lp~~~~~rlwD~~-------L~~i~lail~~~-e~~l~~~~~e~~~~~l~~l~~~~~~~~~~i 345 (360)
++..+||+++|...+|++...||.|+| +|.|++|+++.+ +.++.+.+..+.+.+++|..+.+...+...
T Consensus 359 ~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y~~~i~~~~~~~ 435 (671)
T KOG4347|consen 359 TVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRVLFQIALAILKQNAERILSATDDGEAMMVLGNYFDSIYNGDYPD 435 (671)
T ss_pred eEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHHHhccCCCCCc
Confidence 999999999999999999999999987 477999999988 666688999999999999998886655443
No 7
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=4.1e-35 Score=262.77 Aligned_cols=198 Identities=35% Similarity=0.555 Sum_probs=162.0
Q ss_pred CchhHHHHHHhhcchhh-ccc-----CchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCChhhHHHHHHHHHHh
Q 018112 119 PVLRPKVWFSLSGAAKK-KST-----VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGY 192 (360)
Q Consensus 119 ~~~R~~vW~~llg~~~~-~~~-----~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~rIL~ay 192 (360)
+++|+.+|+.++|..+. ... .....+..........+.+..++|++|+.||++++..+..+.+++.|.+||.+|
T Consensus 1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~ 80 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAY 80 (214)
T ss_dssp -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHh
Confidence 46899999999998630 000 001112222223334455679999999999999778888889999999999999
Q ss_pred hccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHHhhHHhcC
Q 018112 193 SFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALD 272 (360)
Q Consensus 193 ~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~ 272 (360)
+.++|++||||||+.||++++.++.+|++||||+++++ +..++.+|.++.++++..+..++.++++++|+|++||++.|
T Consensus 81 ~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~ 159 (214)
T PF00566_consen 81 AKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLL-NYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLG 159 (214)
T ss_dssp HHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHH-THHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred ccccccccccchhhhhhhhhhhhcccccchhccccchh-cccccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 99999999999999999999976668999999999999 34458999999899999999999999999999999999999
Q ss_pred CCcchhhhHHHHHhcCCCCChHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 018112 273 FDVSLVATEWFLCLFSKSLPSEVRQILITYH-------LVFISIACTKYTEL 317 (360)
Q Consensus 273 i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~-------L~~i~lail~~~e~ 317 (360)
+++..|+.+||+|+|++.+|.+.+.||||++ ++++++|+++..+.
T Consensus 160 ~~~~~~~~~w~~~lF~~~l~~~~~~~lwD~l~~g~~~~l~~~~lail~~~~~ 211 (214)
T PF00566_consen 160 VDPEIYAFPWFLTLFSRSLPFDDVLRLWDFLLEGYKFFLFFIALAILKYLRD 211 (214)
T ss_dssp -GGHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHTHH
T ss_pred hhhhhhhhhhhHhhcCCcCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999944 35688888776543
No 8
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-36 Score=260.63 Aligned_cols=224 Identities=30% Similarity=0.501 Sum_probs=194.0
Q ss_pred cccccccccCCcccCCcCchhHHHHHHHHHHHhhHHHHHHHHhccCCccccccccchhhhhhhhhcccccCCCCHHHHHH
Q 018112 32 ITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKK 111 (360)
Q Consensus 32 ~~~~~~D~yGF~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~klk~ 111 (360)
+.....|++||+...+..+.+........++.|+.+|..|. .+|...+ ..+-++++.
T Consensus 42 ~v~n~pdr~gfi~~~q~a~~~k~~~~~~~L~~ReskwL~ml----dnw~~~m-------------------~kk~~~ir~ 98 (267)
T KOG2221|consen 42 EVTNLPDRFGFIEGEQGAQGKKEPETRGELRYRESKWLHML----DNWHEEM-------------------RKKQKKIRP 98 (267)
T ss_pred hhhcCCcccceeecccccccCCCcccHHHHHhhHHHHHHHH----HHHHHHH-------------------Hhccccccc
Confidence 33445599999986665555555555667788888999997 7785421 135688999
Q ss_pred HHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCCh--hhHHHHHHHH
Q 018112 112 LIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGHATLRRVL 189 (360)
Q Consensus 112 ~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~--~~~~~L~rIL 189 (360)
+|++|||+++|+++|.++.|+......++ ..|.++..+.. +....+.|.+|++|.||.|.+|.+. .|++.|+|+|
T Consensus 99 rcrkgippslr~Raw~ylsGa~~~~~~np-~~~~~~~~~pG--~p~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~l 175 (267)
T KOG2221|consen 99 RCRKGIPPSLRGRAWRYLSGAPSPPPKNP-VVFDELGPAPG--DPKTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVL 175 (267)
T ss_pred hhhcCCCcccchhHHHhhcCCCCCCCCCc-chhhhccCCCC--CCcchhhhccccccCCCcccccccccccchHHHHHHH
Confidence 99999999999999999999988877666 45777765532 3567889999999999999999875 4799999999
Q ss_pred HHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHHhhHH
Q 018112 190 VGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLE 269 (360)
Q Consensus 190 ~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~ 269 (360)
+||..|+|+.||||+-..|||++|+.|+ +++|||||+.++++++ ++||..++..++.+..++..|+++.+|..|.|+.
T Consensus 176 ka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~~~vqicekyl-qgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~ 253 (267)
T KOG2221|consen 176 KAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWCFVQICEKYL-QGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLG 253 (267)
T ss_pred HHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHHHHHHHHHHHc-ccccccchhhhhcccHHHHHHHHhcCCCCCcccc
Confidence 9999999999999999999999999995 8999999999999997 8999999999999999999999999999999999
Q ss_pred hcCCCcchhhhHHH
Q 018112 270 ALDFDVSLVATEWF 283 (360)
Q Consensus 270 ~~~i~~~~~~~~Wf 283 (360)
..++++.+|.+.||
T Consensus 254 ~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 254 GDKVDPLLYMTEWF 267 (267)
T ss_pred cCCCCHHHhhhccC
Confidence 99999999999998
No 9
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-35 Score=273.44 Aligned_cols=245 Identities=24% Similarity=0.370 Sum_probs=209.1
Q ss_pred CCCHHHHHHHHHcCCCCchhHHHHHHhhcchhhcccCc-------hHHHHHHHHHhc------CCCCcchhhHhhccCCC
Q 018112 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVP-------ESYYNDLTKAVE------GKVTPATKQIDHDLPRT 169 (360)
Q Consensus 103 ~~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~-------~~~y~~l~~~~~------~~~~~~~~qI~~Dv~Rt 169 (360)
.++.++|++++|.|||..+|+.+|+.++|+.+...+-. ...|.++..+.. ....+..+||..|++|+
T Consensus 175 ~id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~prm 254 (484)
T KOG1092|consen 175 IIDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPRM 254 (484)
T ss_pred cccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCCC
Confidence 46889999999999999999999999999876654322 223555555443 22345678999999999
Q ss_pred CCCCCCCCChhhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhh-------------------------cCHHHHHH
Q 018112 170 FPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVM-------------------------KTEEDAFW 224 (360)
Q Consensus 170 ~~~~~~f~~~~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~-------------------------~~Ee~aF~ 224 (360)
.|..+.|+.+..++.+.|||..++.++|..||+||.|+++.+++.++ .-|++|||
T Consensus 255 ~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyW 334 (484)
T KOG1092|consen 255 NPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYW 334 (484)
T ss_pred CccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHH
Confidence 99999999999999999999999999999999999999999988765 15789999
Q ss_pred HHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHH-
Q 018112 225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYH- 303 (360)
Q Consensus 225 ~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~- 303 (360)
|+..|++.+ .+.|...+||++.....++.|++..++.+|+||+++|++..+|+++|+.|||.++||+..++||||.+
T Consensus 335 ClskLLD~I--QDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~ 412 (484)
T KOG1092|consen 335 CLSKLLDGI--QDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYL 412 (484)
T ss_pred HHHHHHHHh--hhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhh
Confidence 999999988 78999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred ---------HHHHHHHH-HHHHHHhcCCCchhhHHHHHhhcccCc--ccccchHHhhhh
Q 018112 304 ---------LVFISIAC-TKYTELAGGCTVTEKSVLCLHQFSDNS--ASVGCPILRRSK 350 (360)
Q Consensus 304 ---------L~~i~lai-l~~~e~~l~~~~~e~~~~~l~~l~~~~--~~~~~~i~~~~~ 350 (360)
++|||.|. ++....++ -+++.+.++.|+|++..- ...=++||..|.
T Consensus 413 aE~dgf~~FhvYvcAAFL~kW~~eL~-e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~ 470 (484)
T KOG1092|consen 413 AEPDGFNEFHVYVCAAFLLKWSSELM-ENDFQELILFLQNLPTHNWSDREIELLLSEAF 470 (484)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Confidence 47888887 56665555 889999999999999876 222345555554
No 10
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=258.90 Aligned_cols=232 Identities=24% Similarity=0.354 Sum_probs=188.5
Q ss_pred CCHHHHHHHHHcCCC--CchhHHHHHHhhcchhhcccCc-------hHHHHHHHHHhc----------------------
Q 018112 104 ANAITLKKLIRKGIP--PVLRPKVWFSLSGAAKKKSTVP-------ESYYNDLTKAVE---------------------- 152 (360)
Q Consensus 104 ~~~~klk~~~~~GIP--~~~R~~vW~~llg~~~~~~~~~-------~~~y~~l~~~~~---------------------- 152 (360)
.+.+++++++..|+| ..+|+.+|++++|+.+...... ...|.......-
T Consensus 23 id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhP 102 (370)
T KOG4567|consen 23 IDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHP 102 (370)
T ss_pred hhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCC
Confidence 578999999999999 6799999999999877654322 122333332210
Q ss_pred ------------CCCCcchhhHhhccCCCCCCCCCCCChh-------------------------h--HHHHHHHHHHhh
Q 018112 153 ------------GKVTPATKQIDHDLPRTFPGHPWLDTPD-------------------------G--HATLRRVLVGYS 193 (360)
Q Consensus 153 ------------~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~-------------------------~--~~~L~rIL~ay~ 193 (360)
.++++...||++||.||.|+..+|+... | .....|||..||
T Consensus 103 ls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyA 182 (370)
T KOG4567|consen 103 LSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYA 182 (370)
T ss_pred CCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHh
Confidence 0123446799999999999988875411 1 234579999999
Q ss_pred ccCCCCCcccchHHHHHHHHHhhc----------CHHHHHHHHHHHHHhcccccccc----CCCccchHHHHHHHHHHHh
Q 018112 194 FRDSDVGYCQGLNYVAALLLLVMK----------TEEDAFWMLAVLLENVLVNDCYT----NNLSGCHVEQRVFKDLLVK 259 (360)
Q Consensus 194 ~~~p~igY~QGm~~Iaa~LL~~~~----------~Ee~aF~~l~~l~~~~~~~~~f~----~~~~~l~~~~~~~~~lL~~ 259 (360)
..||.|||+||||.|+|++++++. .|+|||.||..||..+ ++.|. ....|++..+..+..++++
T Consensus 183 KLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMsei--rDnf~k~LDdS~~GI~~~Msr~~~~lk~ 260 (370)
T KOG4567|consen 183 KLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEI--RDNFIKTLDDSVGGIHFLMSRLSELLKK 260 (370)
T ss_pred hcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHH--HHHHHHhccccccchHHHHHHHHHHHHH
Confidence 999999999999999999999882 5889999999999887 67773 4445788889999999999
Q ss_pred hCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHH---------HHHHHHHHHHHHHHhcCCCchhhHHHH
Q 018112 260 QCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYH---------LVFISIACTKYTELAGGCTVTEKSVLC 330 (360)
Q Consensus 260 ~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~---------L~~i~lail~~~e~~l~~~~~e~~~~~ 330 (360)
++-+||.||++.++.|..|+++|+.++++.+||++++++|||.. |.++|.|++......+.-.++..-+..
T Consensus 261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 99999999999999999999999999999999999999999954 578888998888777777777777777
Q ss_pred HhhcccC
Q 018112 331 LHQFSDN 337 (360)
Q Consensus 331 l~~l~~~ 337 (360)
|++.+..
T Consensus 341 LQ~yp~t 347 (370)
T KOG4567|consen 341 LQNYPTT 347 (370)
T ss_pred HhcCCCC
Confidence 8777654
No 11
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=6.2e-30 Score=238.40 Aligned_cols=249 Identities=21% Similarity=0.375 Sum_probs=184.4
Q ss_pred CCCCHHHHHHHH-HcCCCCchhHHHHHHhhcchhhcccCch---------HHHHHHHHHhcCCCCc---------chhhH
Q 018112 102 SLANAITLKKLI-RKGIPPVLRPKVWFSLSGAAKKKSTVPE---------SYYNDLTKAVEGKVTP---------ATKQI 162 (360)
Q Consensus 102 ~~~~~~klk~~~-~~GIP~~~R~~vW~~llg~~~~~~~~~~---------~~y~~l~~~~~~~~~~---------~~~qI 162 (360)
...+.-+|++.+ ..||..++|+.||+.|+..++..++..+ ..|+++.++---.-++ ..-.+
T Consensus 420 qiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~fwknvq~tv 499 (781)
T KOG2224|consen 420 QIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIAFWKNVQFTV 499 (781)
T ss_pred cchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhheEEEE
Confidence 345666888888 5789999999999999998776554332 2355544321100111 11236
Q ss_pred hhccCCCCCCCCCCCChh--hHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhcc------
Q 018112 163 DHDLPRTFPGHPWLDTPD--GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVL------ 234 (360)
Q Consensus 163 ~~Dv~Rt~~~~~~f~~~~--~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~------ 234 (360)
++||-||..++++|.+++ +.+.++|||..|+.|||.+||.|||+++.|+.|.-..+|.++||||+.+|+...
T Consensus 500 dkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapi 579 (781)
T KOG2224|consen 500 DKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPI 579 (781)
T ss_pred ecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhH
Confidence 899999999999998876 489999999999999999999988888888877766677777777777776320
Q ss_pred ------------------ccccc--cCCCccchHHHHHHHHHHHhhCHHHHhhHHhcCCCc--chhhhHHHHHhcCCCCC
Q 018112 235 ------------------VNDCY--TNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDV--SLVATEWFLCLFSKSLP 292 (360)
Q Consensus 235 ------------------~~~~f--~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~--~~~~~~WfltlF~~~lp 292 (360)
...+| ++.-..+...+..+..|++..+|..|+||+++|-+- .+||.+|++.||.++||
T Consensus 580 laevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ 659 (781)
T KOG2224|consen 580 LAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFP 659 (781)
T ss_pred HHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhccc
Confidence 01233 233344556677889999999999999999998653 67999999999999999
Q ss_pred hHHHHHHH---------HHHHHHHHHHHHHHH-HHhc-CCCchhhHHHHHhhcccCc-ccccchHHhhhhccc
Q 018112 293 SEVRQILI---------TYHLVFISIACTKYT-ELAG-GCTVTEKSVLCLHQFSDNS-ASVGCPILRRSKGSI 353 (360)
Q Consensus 293 ~~~~~rlw---------D~~L~~i~lail~~~-e~~l-~~~~~e~~~~~l~~l~~~~-~~~~~~i~~~~~~~~ 353 (360)
-..++||| |+|-+|+|+||+... ...+ .-...+++ |.+|.+.+ ..+..+|||+|++.+
T Consensus 660 ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~dem---llhf~nlam~mdgelilrkar~ll 729 (781)
T KOG2224|consen 660 EAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEM---LLHFGNLAMHMDGELILRKARGLL 729 (781)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhH---HHhhhhhhhhcCchhhHHHHHHHH
Confidence 99999999 678889999996544 3333 33334444 44555555 888899999999863
No 12
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.96 E-value=2.1e-29 Score=249.55 Aligned_cols=244 Identities=27% Similarity=0.405 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHcCCCCchhHHHHHHhhcchhhc------ccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCC
Q 018112 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKK------STVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWL 176 (360)
Q Consensus 103 ~~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~------~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f 176 (360)
..+.+.+...++.|+|.+-|+.+|..+.-....+ ...+.--|++++++. ++..+.|..|+.||||+|++|
T Consensus 564 k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqL----te~qhAi~idlgrtfp~h~~~ 639 (948)
T KOG4436|consen 564 KKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQL----TEQQHAILIDLGRTFPTHPYF 639 (948)
T ss_pred cccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHH----HHHHHHHHHhhccccCCCHHH
Confidence 4578999999999999999999999986543221 222233377888775 567889999999999999999
Q ss_pred CCh--hhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHH
Q 018112 177 DTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFK 254 (360)
Q Consensus 177 ~~~--~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~ 254 (360)
+.. .|+..|+|+|+||+..+|++|||||+.++|++||++| +|+.||-++-.||-..+.+.-|.+++..++..++.+.
T Consensus 640 ~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afellk~LM~~r~~r~qy~pdm~~lq~qmyqLs 718 (948)
T KOG4436|consen 640 SDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLS 718 (948)
T ss_pred HhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHH
Confidence 875 4699999999999999999999999999999999999 8999999999999988888899999999999999999
Q ss_pred HHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHHHH-HHhcCCCchhh
Q 018112 255 DLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTKYT-ELAGGCTVTEK 326 (360)
Q Consensus 255 ~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~~~-e~~l~~~~~e~ 326 (360)
.+++.++|+||+|++++.|.|+.|+.+||+|.|+..||.--+.|++|... |.++++++... ..++.+.+++.
T Consensus 719 rl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK~a~~llsv~k~~l~e~dn~e~ 798 (948)
T KOG4436|consen 719 RLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFKVALSLLSVHKQLLLEKDNFEE 798 (948)
T ss_pred HHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhhhHHHHHHhhHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999653 55888888777 55568899999
Q ss_pred HHHHHhhcccCc-ccccchHHhhhhc
Q 018112 327 SVLCLHQFSDNS-ASVGCPILRRSKG 351 (360)
Q Consensus 327 ~~~~l~~l~~~~-~~~~~~i~~~~~~ 351 (360)
++.++++.-.+. ...-+.|+++-++
T Consensus 799 i~d~~k~~~p~~~~~emeki~~qvf~ 824 (948)
T KOG4436|consen 799 IVDFLKTTLPKMEHTEMEKIIKQVFE 824 (948)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 999998875444 4555555555443
No 13
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.96 E-value=7e-29 Score=238.66 Aligned_cols=224 Identities=25% Similarity=0.363 Sum_probs=193.7
Q ss_pred CHHHHHHHHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCChhhHHH
Q 018112 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHAT 184 (360)
Q Consensus 105 ~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~ 184 (360)
....+-+..+.|+|+-+|+.+|..|++..... ...|..+-+ ..+.+..+||+.|++|+.......+++.|++.
T Consensus 344 k~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~~----~a~y~~IDk---~Ts~~tdrqievdiprchQyd~~lsSp~~~r~ 416 (725)
T KOG1093|consen 344 KRLQILREAYVDVPPLYRGFIWAALLQLEENH----TAFYTLIDK---GTSHSTDRQIEVDIPRCHQYDELLSSPKGHRK 416 (725)
T ss_pred HHHHHHHHhccCCChhHhHHHHHHHhcCcccc----chhhhhhhc---CCCCcchhhhhcccchhhhcccccCCHHHHHH
Confidence 45556666678999999999999999876532 345554422 23458899999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCcccchHHHHHHHHH-hhcCHHHHHHHHHHHHHhccccccccC-CCccchHHHHHHHHHHHhhCH
Q 018112 185 LRRVLVGYSFRDSDVGYCQGLNYVAALLLL-VMKTEEDAFWMLAVLLENVLVNDCYTN-NLSGCHVEQRVFKDLLVKQCP 262 (360)
Q Consensus 185 L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~-~~~~Ee~aF~~l~~l~~~~~~~~~f~~-~~~~l~~~~~~~~~lL~~~~P 262 (360)
|+|+|+|++..+|..-|.||+..+|++||. ++.+|+-||.|+..++-+|. ..+|.. +..-++..+.+|.+++..++|
T Consensus 417 lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc-q~fflkdns~vikeyLs~f~~l~AfhDp 495 (725)
T KOG1093|consen 417 LRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC-QHFFLKDNSNVIKEYLSMFSQLLAFHDP 495 (725)
T ss_pred HHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH-HHHHhhcCchhHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999998865 56789999999999999997 566654 555678889999999999999
Q ss_pred HHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCCchhhHHHHHhhcc
Q 018112 263 RIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITY-------HLVFISIACTKYTELAGGCTVTEKSVLCLHQFS 335 (360)
Q Consensus 263 ~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~-------~L~~i~lail~~~e~~l~~~~~e~~~~~l~~l~ 335 (360)
+|++||..+|+.+.+|+.+||+|+|+++||.+..+.+||- |.+++++|++.-....+....+.+.++++.+++
T Consensus 496 eL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~vAil~~lR~~LLa~nfne~illf~d~p 575 (725)
T KOG1093|consen 496 ELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGVAILIQLRDPLLACNFNECILLFSDLP 575 (725)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhhhhhhCCchhheeeeccCC
Confidence 9999999999999999999999999999999999999994 458899999988877777777778888888888
Q ss_pred c
Q 018112 336 D 336 (360)
Q Consensus 336 ~ 336 (360)
+
T Consensus 576 d 576 (725)
T KOG1093|consen 576 D 576 (725)
T ss_pred c
Confidence 3
No 14
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.95 E-value=3.8e-28 Score=235.56 Aligned_cols=229 Identities=30% Similarity=0.401 Sum_probs=190.0
Q ss_pred CCHHHHHHHHHcCCCCchhHHHHHHhhcchhhccc-CchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCCh--h
Q 018112 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--D 180 (360)
Q Consensus 104 ~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~-~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~--~ 180 (360)
.+..++...+..|||.++|+.+|..+++....... .....|... ..........+| +|+.||||.|..|... .
T Consensus 133 ~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~-~d~~Rt~~~~~~f~~~~~~ 208 (397)
T KOG1102|consen 133 RRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRLQ---LDEPEPHESEII-RDLSRTFPAHLLFRKRYGV 208 (397)
T ss_pred ccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHHh---hccCCCchhHHH-hhccCcCcchhhhhhhcCc
Confidence 46789999999999999999999999997322221 111222221 122233445566 9999999999999774 4
Q ss_pred hHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhh
Q 018112 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQ 260 (360)
Q Consensus 181 ~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~ 260 (360)
++++|.+|+.||+.++|++||||||..+|+++++++ .||+|||+++.+|..+. .+.|..++++++.....++.+++..
T Consensus 209 ~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~ 286 (397)
T KOG1102|consen 209 GQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMKNYG-LDLLSPGFSGLQRSFRQLQRLLKEL 286 (397)
T ss_pred ccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhhccc-hhcccccCCchhhhHHHHHHHHHHh
Confidence 699999999999999999999999999999999999 59999999999999987 5666999999999999999999999
Q ss_pred CHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCchhhHHHHHhh
Q 018112 261 CPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTKYTELAGGCTVTEKSVLCLHQ 333 (360)
Q Consensus 261 ~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~~~e~~l~~~~~e~~~~~l~~ 333 (360)
.|.++.|+...+++..+|+.+||+|+|+..+|++.+.|+||.++ +.+++++.+.....+...+.|..+..+.+
T Consensus 287 ~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~~l~~~~~~~~~~~~~e~~~~~l~~ 366 (397)
T KOG1102|consen 287 IPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSLALLKHKADDLLDLDFESLLSYLRV 366 (397)
T ss_pred ChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHHHHhhhhhHHHhhccHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999775 44666777777666666668888877776
Q ss_pred cccCc
Q 018112 334 FSDNS 338 (360)
Q Consensus 334 l~~~~ 338 (360)
..-..
T Consensus 367 ~~~~~ 371 (397)
T KOG1102|consen 367 DLPKS 371 (397)
T ss_pred ccHhh
Confidence 65333
No 15
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.87 E-value=3.2e-22 Score=197.85 Aligned_cols=230 Identities=22% Similarity=0.325 Sum_probs=178.7
Q ss_pred HHHHHHH-HcCCCCchhHHHHHHhhcchhhcccCch--------HHHHHHHHHhcCCC----------CcchhhHhhccC
Q 018112 107 ITLKKLI-RKGIPPVLRPKVWFSLSGAAKKKSTVPE--------SYYNDLTKAVEGKV----------TPATKQIDHDLP 167 (360)
Q Consensus 107 ~klk~~~-~~GIP~~~R~~vW~~llg~~~~~~~~~~--------~~y~~l~~~~~~~~----------~~~~~qI~~Dv~ 167 (360)
...+..+ .-|+-+.+|+.+|+.+.+......+..+ .-|.....+..... ......|.+||.
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~ 246 (488)
T KOG2197|consen 167 VHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVG 246 (488)
T ss_pred hhhhheecccccccchhhhhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhcc
Confidence 3334444 4457669999999999998776554422 01222222211110 123367999999
Q ss_pred CCCCCCCCCCChhh--HHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCcc
Q 018112 168 RTFPGHPWLDTPDG--HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSG 245 (360)
Q Consensus 168 Rt~~~~~~f~~~~~--~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~ 245 (360)
||.+.+.++..+.. ...|..||.+|+.+++++||||||+++.++++.++++|.+|||||+.+|++. ..-|..+..+
T Consensus 247 rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~--~~nF~~d~~~ 324 (488)
T KOG2197|consen 247 RTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRL--RHNFRIDQSG 324 (488)
T ss_pred ccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHH--hhcCcccccc
Confidence 99999999988777 9999999999999999999999999999999999999999999999999985 4556667789
Q ss_pred chHHHHHHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHH---------HHHHHHHHHHHHH
Q 018112 246 CHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYH---------LVFISIACTKYTE 316 (360)
Q Consensus 246 l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~---------L~~i~lail~~~e 316 (360)
++.....+-.+++..+|.+|.||+..+.....|+++|++..|-++|.++++++||..+ -++++.+++....
T Consensus 325 ~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~~~ 404 (488)
T KOG2197|consen 325 MQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNKDP 404 (488)
T ss_pred HHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhcch
Confidence 9999999999999999999999999999999999999999999999999999999754 2567778877654
Q ss_pred HhcCC--CchhhHHHHHhhcccCc
Q 018112 317 LAGGC--TVTEKSVLCLHQFSDNS 338 (360)
Q Consensus 317 ~~l~~--~~~e~~~~~l~~l~~~~ 338 (360)
..+.+ ..+...+..+..+..++
T Consensus 405 ~~l~~~~~~~~e~l~~i~~~~~~~ 428 (488)
T KOG2197|consen 405 QTLMEQGKSFNEVLKHVNLLSEKA 428 (488)
T ss_pred HHHHhcCccchhHHhhcccccccc
Confidence 44433 33444444355554444
No 16
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=7.5e-22 Score=190.32 Aligned_cols=184 Identities=24% Similarity=0.359 Sum_probs=137.7
Q ss_pred chhhHhhccCCCCCCC-CCCCChhhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhc-------------------
Q 018112 158 ATKQIDHDLPRTFPGH-PWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------- 217 (360)
Q Consensus 158 ~~~qI~~Dv~Rt~~~~-~~f~~~~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~------------------- 217 (360)
..+.|+.|+.||||.+ .+|+++.-+..|++||..|+.-+|.+||-|||+.+.|+++++..
T Consensus 104 L~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f 183 (625)
T KOG1091|consen 104 LEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGF 183 (625)
T ss_pred HHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCc
Confidence 4567999999999999 88988888999999999999999999999999999999998761
Q ss_pred CHHH-----------HH--HHHHHHHHh--cc--------------ccc------cccCCCccchHHHHHHHHHHHhhCH
Q 018112 218 TEED-----------AF--WMLAVLLEN--VL--------------VND------CYTNNLSGCHVEQRVFKDLLVKQCP 262 (360)
Q Consensus 218 ~Ee~-----------aF--~~l~~l~~~--~~--------------~~~------~f~~~~~~l~~~~~~~~~lL~~~~P 262 (360)
.|.+ ++ -.+..+|.. +. .++ -+.++.+-+-.....+..++.+.++
T Consensus 184 ~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~ 263 (625)
T KOG1091|consen 184 EERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDK 263 (625)
T ss_pred chhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccH
Confidence 1222 22 123333311 10 000 0112233344455678999999999
Q ss_pred HHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHHH----------HHHHHHHHHHHHhcCCCchhhHHHHHh
Q 018112 263 RIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHLV----------FISIACTKYTELAGGCTVTEKSVLCLH 332 (360)
Q Consensus 263 ~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L~----------~i~lail~~~e~~l~~~~~e~~~~~l~ 332 (360)
.||.||.+.||.|.+|..+|.-.||-|+||+.+++.+||-+++ ++.++++-+....+...+....+..+.
T Consensus 264 ~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~tcL~~Lm 343 (625)
T KOG1091|consen 264 SLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQTCLQYLM 343 (625)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHh
Confidence 9999999999999999999999999999999999999994432 356666666655555555555777777
Q ss_pred hcccCcccc
Q 018112 333 QFSDNSASV 341 (360)
Q Consensus 333 ~l~~~~~~~ 341 (360)
|++......
T Consensus 344 ~yP~~~Dv~ 352 (625)
T KOG1091|consen 344 NYPEIIDVD 352 (625)
T ss_pred cCCCcCcHH
Confidence 777766443
No 17
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.84 E-value=5.3e-21 Score=174.57 Aligned_cols=218 Identities=18% Similarity=0.262 Sum_probs=166.7
Q ss_pred CHHHHHHHHH--cC-CCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCC---CCC
Q 018112 105 NAITLKKLIR--KG-IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPW---LDT 178 (360)
Q Consensus 105 ~~~klk~~~~--~G-IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~---f~~ 178 (360)
+.+.|+.+.- .| +-+++|+.+|..|+|..-.... ...+.+..+ ..+...|...|++|++..-+- +..
T Consensus 47 dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~--~~~~~~~~q-----~hkd~nQV~LDv~RSl~rfppg~p~~~ 119 (395)
T KOG2595|consen 47 DVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD--ATSTLTPVQ-----KHKDYNQVILDVERSLGRFPPGIPKEL 119 (395)
T ss_pred cHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc--ccccCChhh-----hCcccceEEEehhhhhccCCCCCCHHH
Confidence 5566665553 33 4678999999999997654432 122222222 257789999999999855442 111
Q ss_pred h-hhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHH
Q 018112 179 P-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL 257 (360)
Q Consensus 179 ~-~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL 257 (360)
+ .-|+.|..++..--..+|+..|.||.++||.++|+++ .|.+|+-....+-..++ ++|..+.+.+....+..+..++
T Consensus 120 R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~l-rdfM~~Tld~t~~qL~~i~~iI 197 (395)
T KOG2595|consen 120 RLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLHL-RDFMLPTLDFTVRQLRLISPII 197 (395)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2356666666656678899999999999999999999 69999999999987665 8999999999989999999999
Q ss_pred HhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCC-ChHHHHHHHHHHH-------HHHHHHHHHHHH-HhcCCCchhhHH
Q 018112 258 VKQCPRIASHLEALDFDVSLVATEWFLCLFSKSL-PSEVRQILITYHL-------VFISIACTKYTE-LAGGCTVTEKSV 328 (360)
Q Consensus 258 ~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~l-p~~~~~rlwD~~L-------~~i~lail~~~e-~~l~~~~~e~~~ 328 (360)
+..+|+||+.|++..+. .+|+.+|.+|+|++.+ ++..++|++|+|+ +|++.+++-+.+ .++.| ++++
T Consensus 198 k~~nP~Ly~~l~~aevg-tlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~piyv~A~vvL~r~~eIl~~---~~dm 273 (395)
T KOG2595|consen 198 KEVNPELYQFLQSAEVG-TLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPIYVYAAVVLYRRSEILKC---DCDM 273 (395)
T ss_pred hhcChHHHHHHHhhccc-ceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhHHHHHHHhhhhHHHHHHH---Hhhh
Confidence 99999999999999886 5799999999999999 8999999999997 688888876663 33333 3333
Q ss_pred HHHhhcc
Q 018112 329 LCLHQFS 335 (360)
Q Consensus 329 ~~l~~l~ 335 (360)
..+|.+-
T Consensus 274 s~~H~lL 280 (395)
T KOG2595|consen 274 SLLHGLL 280 (395)
T ss_pred HHHHHHH
Confidence 3455443
No 18
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.78 E-value=1e-18 Score=174.19 Aligned_cols=226 Identities=23% Similarity=0.279 Sum_probs=189.3
Q ss_pred CCCHHHHHHHHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCC-CCcchhhHhhccCCCCCCCCCCCChh-
Q 018112 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGK-VTPATKQIDHDLPRTFPGHPWLDTPD- 180 (360)
Q Consensus 103 ~~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~-~~~~~~qI~~Dv~Rt~~~~~~f~~~~- 180 (360)
.....+|+.++.+|||...|-.+|+.++.........-...|.++....... .....-.|..|++||.|.|.+|+...
T Consensus 171 ~~s~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s~~~Ek~~~~~~Irrdi~~~~~eh~~fke~~s 250 (948)
T KOG4436|consen 171 KKSLHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCSSQQEKELHIGIIRRDIERTYPEHYFFKEQSS 250 (948)
T ss_pred hhchhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhcchhhhhHHHHHHHHHhhccCcceeeeccCcc
Confidence 3467899999999999999999999998876543211123355555443221 12234489999999999999998632
Q ss_pred --------hHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHH
Q 018112 181 --------GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRV 252 (360)
Q Consensus 181 --------~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~ 252 (360)
+++.|+++.++|+...-++|||||=+++++.+++.+ ++|.+|-.++.+|..+..+..+.+.+..+-..+..
T Consensus 251 ~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q 329 (948)
T KOG4436|consen 251 TVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQ 329 (948)
T ss_pred CCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchhHHHHHh
Confidence 489999999999999999999999999999999999 69999999999999999999999999988888899
Q ss_pred HHHHHHhhCH-HHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHH-HHHHHhcCCCc
Q 018112 253 FKDLLVKQCP-RIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACT-KYTELAGGCTV 323 (360)
Q Consensus 253 ~~~lL~~~~P-~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail-~~~e~~l~~~~ 323 (360)
++...+...| .++.|+.+.+++.++|...||++.|...+|+...-++.|.|. |.+++|++ ...+..+...+
T Consensus 330 ~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~~ia~~~~~~d~~~~s~D 409 (948)
T KOG4436|consen 330 LECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRDSIAYLHQLRDIELESLD 409 (948)
T ss_pred hcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHHHHhhhHHHHHHHhhhhhhccC
Confidence 9999999999 999999999999999999999999999999999999998663 45777887 55566667777
Q ss_pred hhhHHH
Q 018112 324 TEKSVL 329 (360)
Q Consensus 324 ~e~~~~ 329 (360)
.|....
T Consensus 410 ~EG~~~ 415 (948)
T KOG4436|consen 410 MEGMLS 415 (948)
T ss_pred cccccc
Confidence 777653
No 19
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.42 E-value=1.2e-12 Score=123.84 Aligned_cols=208 Identities=18% Similarity=0.317 Sum_probs=151.7
Q ss_pred CCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCC--hhhHHHHHHHHHHhh
Q 018112 116 GIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDT--PDGHATLRRVLVGYS 193 (360)
Q Consensus 116 GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~--~~~~~~L~rIL~ay~ 193 (360)
|=|.+. |+.++|+..+. .+-..++.+. +-+...+|.+|..|-......-.. -.-...|..++.-|+
T Consensus 36 G~~~~~----W~~~L~V~~K~--d~l~~wd~iy------dLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYC 103 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKP--NPLDDWDQIY------DLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYC 103 (669)
T ss_pred CCCHHH----HHHHhcccCCC--CchhhHHHHh------CCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhh
Confidence 556555 99999987543 2334455543 346667788887665433221111 012458899999998
Q ss_pred ccCCCCCcccchHHHHH---HHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHHhhHHh
Q 018112 194 FRDSDVGYCQGLNYVAA---LLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEA 270 (360)
Q Consensus 194 ~~~p~igY~QGm~~Iaa---~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~ 270 (360)
.. .++.|......|.- ++++.+ +-.+.|-||.+++++|.|++.-..+.+ +..|..||+.++|+|..||..
T Consensus 104 K~-Rn~~Y~~d~gWi~lL~pl~~L~l-prsd~fN~F~ai~~kYIPkdcrpkg~~-----Fh~FRLLlqYHdPelc~~Ldt 176 (669)
T KOG3636|consen 104 KK-RNMDYIKDIGWITLLEPLLLLNL-PRSDEFNVFFAITTKYIPKDCRPKGQI-----FHLFRLLLQYHDPELCNHLDT 176 (669)
T ss_pred hc-cCCcccccccHHHHHHHHHHhcC-CcchhhhhhHhhhhcccCCCCCCCCcc-----chHHHHHHHhcCHHHhhhhhc
Confidence 53 34666665555443 234445 578999999999999998887665544 567999999999999999999
Q ss_pred cCCCcchhhhHHHHHhcCCCCChHHHHHHHHHH--------HHHHHHHHH-HHHHHhcCC--CchhhHHHHHhhcccCcc
Q 018112 271 LDFDVSLVATEWFLCLFSKSLPSEVRQILITYH--------LVFISIACT-KYTELAGGC--TVTEKSVLCLHQFSDNSA 339 (360)
Q Consensus 271 ~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~--------L~~i~lail-~~~e~~l~~--~~~e~~~~~l~~l~~~~~ 339 (360)
..+.|.+|+..||-+||+.+.+.+.+..+||.+ +||+++.|+ ...+.++.+ .+.|+.+.+|.|.+..+.
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~ 256 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLS 256 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcc
Confidence 999999999999999999999999999999954 467777664 444666644 668999999999998884
Q ss_pred ccc
Q 018112 340 SVG 342 (360)
Q Consensus 340 ~~~ 342 (360)
..|
T Consensus 257 ~eD 259 (669)
T KOG3636|consen 257 VED 259 (669)
T ss_pred ccc
Confidence 443
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=4.3e-09 Score=95.38 Aligned_cols=209 Identities=23% Similarity=0.300 Sum_probs=150.6
Q ss_pred CHHHHHHHHHcCC---CCchhHHHHHHhhcchhhcccCc-hHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCChh
Q 018112 105 NAITLKKLIRKGI---PPVLRPKVWFSLSGAAKKKSTVP-ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180 (360)
Q Consensus 105 ~~~klk~~~~~GI---P~~~R~~vW~~llg~~~~~~~~~-~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~ 180 (360)
...+||++.|.|- ...+|++|++.++.-.+.....| ...|.++.-+.-++.++.---+..=|..|-- ..+..+..
T Consensus 31 elqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclplpefvdntqv-psyclnar 109 (559)
T KOG2801|consen 31 ELQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQV-PSYCLNAR 109 (559)
T ss_pred hHHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCcccccchhhcccCcC-chhhhcCc
Confidence 4678999999996 56799999999987655543333 3457777655444333221111111111110 01122345
Q ss_pred hHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccc-cccccCCCccchHHHHHHHHHHHh
Q 018112 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV-NDCYTNNLSGCHVEQRVFKDLLVK 259 (360)
Q Consensus 181 ~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~-~~~f~~~~~~l~~~~~~~~~lL~~ 259 (360)
|....+.||.+.++..|+|++|..+..++|+||.+.-+|+++|--.+.++.-.-+ +......+..+...+..|.+++.+
T Consensus 110 gegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlvnk 189 (559)
T KOG2801|consen 110 GEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVNK 189 (559)
T ss_pred CchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHHH
Confidence 6778999999999999999999999999999999988999999887776632211 334445555666777889999999
Q ss_pred hCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHHHH
Q 018112 260 QCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTKYT 315 (360)
Q Consensus 260 ~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~~~ 315 (360)
++...++.+....-+.......|--.+|- ++|+-...|++|.|| +.+++||+++.
T Consensus 190 ycqaahklmvavsedvlqvyadwqrwlfg-elplcyfarvfdvflvegykvlyrvalailkff 251 (559)
T KOG2801|consen 190 YCQAAHKLMVAVSEDVLQVYADWQRWLFG-ELPLCYFARVFDVFLVEGYKVLYRVALAILKFF 251 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhc-cchHHHHHHHhhheeecchHHHHHHHHHHHHHH
Confidence 99999998877666677777888887775 899999999999875 56999999887
No 21
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=98.39 E-value=1.8e-08 Score=96.88 Aligned_cols=237 Identities=17% Similarity=0.251 Sum_probs=151.2
Q ss_pred CHHHHHHHHHcCCCCchhHHHHHHhhcchhhcc------cCc---hHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCC
Q 018112 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKS------TVP---ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPW 175 (360)
Q Consensus 105 ~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~------~~~---~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~ 175 (360)
...-+...++.|+....|+.+|....+-..... ++. ...|+..+-.. .....+.|++|+.|+..+..+
T Consensus 547 e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~---~~~~~~~~~kd~e~~~~~~~~ 623 (813)
T KOG1648|consen 547 EWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITL---FRANLHRIDKDVERCDRNLMF 623 (813)
T ss_pred HHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHH---HhhheeeecchhhhCcchhee
Confidence 334555666888999999999999877532211 110 12244332221 123467899999999999999
Q ss_pred CCChhhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHH
Q 018112 176 LDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKD 255 (360)
Q Consensus 176 f~~~~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ 255 (360)
|.+.++.++ +++...|...|-+-||.|||.++.++++..++||..+--|+.-+|-.- ++-|. ..++....+-.+.
T Consensus 624 fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q--~~~~~-q~~~~~~~l~~~r- 698 (813)
T KOG1648|consen 624 FSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQ--RGKFP-QRPGMSKCLLNLR- 698 (813)
T ss_pred ecCCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHh--cccCC-CCCCccccccccc-
Confidence 999888888 889999999999999999999999999988877765555655555332 23232 2333333222222
Q ss_pred HHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHH------------HHHHHHHHHHHHHHHHHhcCCCc
Q 018112 256 LLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILI------------TYHLVFISIACTKYTELAGGCTV 323 (360)
Q Consensus 256 lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlw------------D~~L~~i~lail~~~e~~l~~~~ 323 (360)
+++-.+|-... +. . -....++||+.-|.+.+..+.....| |-+-+|++++...++..+....-
T Consensus 699 ~~~v~~~l~s~-id---~-~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~~~ 773 (813)
T KOG1648|consen 699 LIQVVDPLISD-ID---Y-AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLATTNYHDVLITNNF 773 (813)
T ss_pred chhhhcchhcc-hh---h-hhhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHHHhhHHHHhhccc
Confidence 44555552221 11 1 12245999999999999777665555 45556788888888877776544
Q ss_pred hhhHHHHHhhcccCcccccchHHhhhhccccc
Q 018112 324 TEKSVLCLHQFSDNSASVGCPILRRSKGSISC 355 (360)
Q Consensus 324 ~e~~~~~l~~l~~~~~~~~~~i~~~~~~~~~~ 355 (360)
..-.+.-+.+-...-..++. ++-.|+.++.|
T Consensus 774 ~~t~~i~~~~~~~e~~~c~r-~~~~~~~~~~~ 804 (813)
T KOG1648|consen 774 DYTDMIKFFNEMAERHDCSR-LLSSARTHVKC 804 (813)
T ss_pred chHHHHHHHHHHHhhhhhHH-HHhcCcchHHH
Confidence 44444444444333344444 56667666665
No 22
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=96.12 E-value=0.0016 Score=62.40 Aligned_cols=35 Identities=34% Similarity=0.620 Sum_probs=31.7
Q ss_pred CCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Q 018112 199 VGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENV 233 (360)
Q Consensus 199 igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~ 233 (360)
+|-.|||++++|++|--.-+|.++||||+.+|++.
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqna 600 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNA 600 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcce
Confidence 68889999999999887779999999999999864
No 23
>PF14961 BROMI: Broad-minded protein
Probab=95.93 E-value=0.057 Score=58.48 Aligned_cols=136 Identities=19% Similarity=0.182 Sum_probs=89.0
Q ss_pred HHHHHHHhhccCCCCCcccchHHHHHHHHHhh-cCHHHHHHHHHHHHHh----ccc-cc-cccCCC------ccc----h
Q 018112 185 LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVM-KTEEDAFWMLAVLLEN----VLV-ND-CYTNNL------SGC----H 247 (360)
Q Consensus 185 L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~-~~Ee~aF~~l~~l~~~----~~~-~~-~f~~~~------~~l----~ 247 (360)
-.+++.-|..+++.=+| .|-...|+.+.+.| .|-+.+.-.+.++-.. +++ +. ...... .|+ -
T Consensus 1086 ~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~ 1164 (1296)
T PF14961_consen 1086 SLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYF 1164 (1296)
T ss_pred hhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhh
Confidence 33455555445554444 47787777666665 5566666555444332 111 11 111111 122 2
Q ss_pred HHHHHHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHH-HHH------HHHHHHHHHHHHHhcC
Q 018112 248 VEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILIT-YHL------VFISIACTKYTELAGG 320 (360)
Q Consensus 248 ~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD-~~L------~~i~lail~~~e~~l~ 320 (360)
..+..++.+|+...|.++.-|.-.|..++..+.+|+-.||=+.|++..+....- +.+ +|+++|+++..+..+.
T Consensus 1165 ~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~~il 1244 (1296)
T PF14961_consen 1165 CSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQPEIL 1244 (1296)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhHHHH
Confidence 235788999999999999999999999999999999999999999987654332 111 5799999998855554
Q ss_pred C
Q 018112 321 C 321 (360)
Q Consensus 321 ~ 321 (360)
.
T Consensus 1245 q 1245 (1296)
T PF14961_consen 1245 Q 1245 (1296)
T ss_pred H
Confidence 3
No 24
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=74.10 E-value=4.1 Score=27.64 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=35.4
Q ss_pred HHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCC
Q 018112 252 VFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSL 291 (360)
Q Consensus 252 ~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~l 291 (360)
.|.++--++.|+.-+.|++.||+.++-..+-|+++|+.+.
T Consensus 5 ~FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 5 EFMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHH
Confidence 4677788999999999999999999999999999998654
No 25
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=40.42 E-value=10 Score=38.38 Aligned_cols=32 Identities=41% Similarity=0.523 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCCCchhHHHHHHhhcchhhccc
Q 018112 107 ITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST 138 (360)
Q Consensus 107 ~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~ 138 (360)
+-++.....||++.+|+.+|..|+|.+....+
T Consensus 68 ~~l~~i~~~gi~psir~evw~fll~~y~~~~~ 99 (488)
T KOG2197|consen 68 KLLKLIILGGIDPSIRGEVWEFLLGCYDLDST 99 (488)
T ss_pred hhheeeecCCCCCcccchhHHHHhcccCCCCc
Confidence 34445557999999999999999999875443
No 26
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=37.89 E-value=4.2 Score=40.00 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=69.6
Q ss_pred hHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhcccccccc
Q 018112 161 QIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240 (360)
Q Consensus 161 qI~~Dv~Rt~~~~~~f~~~~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~ 240 (360)
.|+.|+..|+. +..+.++..=. |.+|..+|+++||| +..+.+ ...+++.
T Consensus 2 ~~~~~~~~~~~----~~~~~~~~~~~--l~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~~~ 50 (397)
T KOG1102|consen 2 EIDSPVRLTFR----LRPRYGQKQNN--LAAYEPYNPEVGYC--VLHITS-----------------------KSDGFQS 50 (397)
T ss_pred CCCcccccccc----CCCCccccccc--ccCCCccccccccc--hhhhhh-----------------------ccccccc
Confidence 35567777765 33333311111 88999999999999 555544 1144455
Q ss_pred CCCccchHHHHHHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH
Q 018112 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL 304 (360)
Q Consensus 241 ~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L 304 (360)
.+...+...............+.-..|+...+ ........|+.-.|..........++||..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (397)
T KOG1102|consen 51 SNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKL 113 (397)
T ss_pred CCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHh
Confidence 45444444433344444445556666776666 6667778888888888888888888888654
No 27
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=33.39 E-value=6.9 Score=25.54 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=19.6
Q ss_pred CHHHHHHHH-HcCCCCchhHHHHHH
Q 018112 105 NAITLKKLI-RKGIPPVLRPKVWFS 128 (360)
Q Consensus 105 ~~~klk~~~-~~GIP~~~R~~vW~~ 128 (360)
.+++||+++ ..|||+..|..+|.+
T Consensus 19 ~~k~lkk~~~e~kiP~~~R~~~pll 43 (47)
T TIGR02433 19 GSKKLKKLFIDAKVPPWLRDRIPLL 43 (47)
T ss_pred CCchHHHHHHHcCCCHHHHcCccEE
Confidence 468899999 689999999886644
No 28
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=27.40 E-value=16 Score=27.94 Aligned_cols=47 Identities=28% Similarity=0.336 Sum_probs=30.9
Q ss_pred CCHHHHHHHHH---cCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHH
Q 018112 104 ANAITLKKLIR---KGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKA 150 (360)
Q Consensus 104 ~~~~klk~~~~---~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~ 150 (360)
.+..-++++.+ +-.|+.+|...|.-++-+.-...+.....|+.|.+-
T Consensus 25 ~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lrel 74 (91)
T PF12829_consen 25 DNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLREL 74 (91)
T ss_pred ChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHHH
Confidence 34455556665 458999999999998776544333334567777543
No 29
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=23.96 E-value=61 Score=18.64 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=10.3
Q ss_pred CCcccchHHHHHHHH
Q 018112 199 VGYCQGLNYVAALLL 213 (360)
Q Consensus 199 igY~QGm~~Iaa~LL 213 (360)
-||.||+.+..--.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 489999877654433
No 30
>PF13041 PPR_2: PPR repeat family
Probab=22.53 E-value=1.1e+02 Score=19.72 Aligned_cols=26 Identities=0% Similarity=0.011 Sum_probs=20.2
Q ss_pred HHHhhHHhcCCCcchhhhHHHHHhcC
Q 018112 263 RIASHLEALDFDVSLVATEWFLCLFS 288 (360)
Q Consensus 263 ~L~~hL~~~~i~~~~~~~~WfltlF~ 288 (360)
++++.+.+.|+.|..+++.=++..|.
T Consensus 24 ~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 24 KLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 56777888899998888877776654
Done!