Query 018112
Match_columns 360
No_of_seqs 308 out of 1598
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 100.0 7E-51 2.4E-55 388.2 18.3 242 104-351 36-307 (334)
2 3qye_A TBC1 domain family memb 100.0 4.8E-50 1.7E-54 382.3 22.9 243 104-351 47-306 (331)
3 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 6.1E-50 2.1E-54 378.2 17.8 242 104-352 21-274 (310)
4 2qfz_A TBC1 domain family memb 100.0 5.9E-49 2E-53 376.8 18.5 246 104-352 38-332 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 8.8E-48 3E-52 374.3 21.4 245 104-350 21-376 (396)
6 4hl4_A TBC1 domain family memb 100.0 3.1E-45 1E-49 343.1 16.3 238 104-353 32-286 (292)
7 3qwl_A TBC1 domain family memb 100.0 3.3E-35 1.1E-39 273.6 12.2 230 103-352 37-282 (294)
8 1dxs_A P53-like transcription 24.4 62 0.0021 23.0 3.1 24 110-133 42-65 (80)
9 1erd_A Pheromone ER-2; NMR {Eu 23.4 30 0.001 20.2 1.0 16 195-210 13-28 (40)
10 2js3_A Uncharacterized protein 14.5 45 0.0015 23.6 0.5 11 200-210 17-27 (96)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7e-51 Score=388.18 Aligned_cols=242 Identities=20% Similarity=0.301 Sum_probs=209.8
Q ss_pred CCHHHHHHHHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhc-------C---------------CCCcchhh
Q 018112 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVE-------G---------------KVTPATKQ 161 (360)
Q Consensus 104 ~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~-------~---------------~~~~~~~q 161 (360)
.+++++|+++++|||+++|+.||+.++|+... ...+.|+.+.+... . ...+..+|
T Consensus 36 ~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~---~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 112 (334)
T 2qq8_A 36 WCSRKVRDLWWQGIPPSVRGKVWSLAIGNELN---ITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLEL 112 (334)
T ss_dssp CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTTC---CCHHHHHHHHHHHHHHC----------------------CCHHHH
T ss_pred cChHHHHHHHHCCCCHHHHHHHHHHHhCCccc---cCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchhHHHH
Confidence 47799999999999999999999999998532 23456776654311 0 01356789
Q ss_pred HhhccCCCCCCCCCCCCh-hhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhcccccccc
Q 018112 162 IDHDLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240 (360)
Q Consensus 162 I~~Dv~Rt~~~~~~f~~~-~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~ 240 (360)
|++||+||+|++++|+.+ .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+++.+.++|.
T Consensus 113 I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~ 191 (334)
T 2qq8_A 113 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFR 191 (334)
T ss_dssp HHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHS
T ss_pred HHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccC
Confidence 999999999999999875 4799999999999999999999999999999999999 79999999999999887678999
Q ss_pred CCCccchHHHHHHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHH
Q 018112 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTK 313 (360)
Q Consensus 241 ~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~ 313 (360)
.+.++++..+.+++.+++.++|+||+||++.|+++.+|+++||+|+|++++|+++++||||.++ +++|+|+++
T Consensus 192 ~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~ 271 (334)
T 2qq8_A 192 VDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILK 271 (334)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999764 779999999
Q ss_pred HHHHhcCCCchhhHHHHHhhcccCcccccchHHhhhhc
Q 018112 314 YTELAGGCTVTEKSVLCLHQFSDNSASVGCPILRRSKG 351 (360)
Q Consensus 314 ~~e~~l~~~~~e~~~~~l~~l~~~~~~~~~~i~~~~~~ 351 (360)
..+..+...++++++..|++++..+. ...|+++|.+
T Consensus 272 ~~~~~Ll~~d~~~il~~L~~lp~~~d--~~~l~~~a~~ 307 (334)
T 2qq8_A 272 LFEDILTKMDFIHMAQFLTRLPEDLP--AEELFASIAT 307 (334)
T ss_dssp HTHHHHHTCCHHHHHHHHHSCCTTCC--HHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHhCCCcCC--HHHHHHHHHH
Confidence 88766655678999999999988743 3346777765
No 2
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=4.8e-50 Score=382.27 Aligned_cols=243 Identities=26% Similarity=0.394 Sum_probs=213.3
Q ss_pred CCHHHHHHHHHcCCCCchhHHHHHHhhcchhhccc------CchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCC
Q 018112 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST------VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD 177 (360)
Q Consensus 104 ~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~------~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~ 177 (360)
.+.+++++++++|||+++|+.||+.++|+.....+ ...+.|.++.++ ..+..++|++||+||+|++++|.
T Consensus 47 ~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~----~~~~~~~I~~Dv~Rt~~~~~~f~ 122 (331)
T 3qye_A 47 FDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQ----LTSQQHAILIDLGRTFPTHPYFS 122 (331)
T ss_dssp CCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTS----CCTTHHHHHHHHTTSSTTSTTTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHh----cCCchhHHHHhhcccCCCchhhc
Confidence 47899999999999999999999999998764322 123568888654 34667999999999999999999
Q ss_pred Ch--hhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHH
Q 018112 178 TP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKD 255 (360)
Q Consensus 178 ~~--~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ 255 (360)
.+ .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+++.++++|.+++++++..+.+++.
T Consensus 123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (331)
T 3qye_A 123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSR 201 (331)
T ss_dssp STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHH
Confidence 86 5799999999999999999999999999999999999 79999999999999887789999999999999999999
Q ss_pred HHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHHHHH-HhcCCCchhhH
Q 018112 256 LLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTKYTE-LAGGCTVTEKS 327 (360)
Q Consensus 256 lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~~~e-~~l~~~~~e~~ 327 (360)
+++.++|+||+||++.|+++.+|+++||+|+|++++|++.++||||.++ +++++|++...+ .++.+.+++++
T Consensus 202 ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~i 281 (331)
T 3qye_A 202 LLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETI 281 (331)
T ss_dssp HHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999999999999999999999999999999999999774 789999988884 45577799999
Q ss_pred HHHHhhcccCc-ccccchHHhhhhc
Q 018112 328 VLCLHQFSDNS-ASVGCPILRRSKG 351 (360)
Q Consensus 328 ~~~l~~l~~~~-~~~~~~i~~~~~~ 351 (360)
+..+++..... ..+-..++++|.+
T Consensus 282 l~~l~~~~p~~~~~di~~li~~A~~ 306 (331)
T 3qye_A 282 VDFIKSTLPNLGLVQMEKTINQVFE 306 (331)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHh
Confidence 99999844433 3344556777754
No 3
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.1e-50 Score=378.20 Aligned_cols=242 Identities=28% Similarity=0.491 Sum_probs=210.2
Q ss_pred CCHHHHHHHHHcCCCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCCh--hh
Q 018112 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DG 181 (360)
Q Consensus 104 ~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~--~~ 181 (360)
.++++||+++++|||+++|+.||+.++|+..... ..+.|.++.. ..++..++|++||+||+|++++|..+ .+
T Consensus 21 ~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~--~~~~Y~~l~~----~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~ 94 (310)
T 3hzj_A 21 ARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQA--MLDRYRILIT----KDSAQESVITRDIHRTFPAHDYFKDTGGDG 94 (310)
T ss_dssp SCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHH--HHHHHHHHTT----SCCTTHHHHHHHHTTSSTTSTTTSSTTSHH
T ss_pred cCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchh--HHHHHHHHHh----ccCCcHHHHHHHHHhhCCCchhhcCCCchh
Confidence 3678999999999999999999999999865321 1345766643 24677899999999999999999876 57
Q ss_pred HHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHHHHhhC
Q 018112 182 HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQC 261 (360)
Q Consensus 182 ~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~ 261 (360)
++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+++.++++|.+++++++..+.+++.+++.++
T Consensus 95 ~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 173 (310)
T 3hzj_A 95 QESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL 173 (310)
T ss_dssp HHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999 79999999999999987799999999999999999999999999
Q ss_pred HHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCchhhHHHHHh-h
Q 018112 262 PRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL-------VFISIACTKYTELAGGCTVTEKSVLCLH-Q 333 (360)
Q Consensus 262 P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L-------~~i~lail~~~e~~l~~~~~e~~~~~l~-~ 333 (360)
|+||+||++.|+++.+|+++||+|+|++++|++.++||||.++ +++++|++...+..+...++++++..++ +
T Consensus 174 p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~ 253 (310)
T 3hzj_A 174 PDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQ 253 (310)
T ss_dssp HHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTH
T ss_pred hHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999774 7799999888855554458899998885 6
Q ss_pred cccCc--ccccchHHhhhhcc
Q 018112 334 FSDNS--ASVGCPILRRSKGS 352 (360)
Q Consensus 334 l~~~~--~~~~~~i~~~~~~~ 352 (360)
+++.. ..+...+++.|...
T Consensus 254 lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 254 LPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp HHHTTCSHHHHHHHHHHHHHS
T ss_pred CcccccccccHHHHHHHHHhc
Confidence 77653 22345567777643
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=5.9e-49 Score=376.79 Aligned_cols=246 Identities=20% Similarity=0.318 Sum_probs=210.7
Q ss_pred CCHHHHHHHHHcCCCCchhHHHHHHhhcchhhccc-------CchHHHHHHHHHhcC-----CCCcchhhHhhccCCCCC
Q 018112 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG-----KVTPATKQIDHDLPRTFP 171 (360)
Q Consensus 104 ~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~-----~~~~~~~qI~~Dv~Rt~~ 171 (360)
.+.++||+++++|||+.+|+.||+.++|+.+.... .....|.++.++... ...+..+||++||+||+|
T Consensus 38 ~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p 117 (345)
T 2qfz_A 38 TDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSP 117 (345)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSC
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCC
Confidence 37899999999999999999999999998643221 113568888776422 123567899999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhc------------------------CHHHHHHHHH
Q 018112 172 GHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------------TEEDAFWMLA 227 (360)
Q Consensus 172 ~~~~f~~~~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~------------------------~Ee~aF~~l~ 227 (360)
+ ++|+++.+++.|+|||.+|+.+||++|||||||+|||+||+++. +|++|||||+
T Consensus 118 ~-~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~ 196 (345)
T 2qfz_A 118 E-ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMS 196 (345)
T ss_dssp H-HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred c-cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999998763 2999999999
Q ss_pred HHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHH----
Q 018112 228 VLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYH---- 303 (360)
Q Consensus 228 ~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~---- 303 (360)
++|+++ +++|..+++|++..+.+++.+++.++|+||+||++.|+++.+|+++||+|+|+++||+++++||||.+
T Consensus 197 ~lm~~~--~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 197 KLLDGI--QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHHTS--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHHcc--ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 999987 78999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred ------HHHHHHHHHHHHHH-hcCCCchhhHHHHHhhcccCc--ccccchHHhhhhcc
Q 018112 304 ------LVFISIACTKYTEL-AGGCTVTEKSVLCLHQFSDNS--ASVGCPILRRSKGS 352 (360)
Q Consensus 304 ------L~~i~lail~~~e~-~l~~~~~e~~~~~l~~l~~~~--~~~~~~i~~~~~~~ 352 (360)
++++|+|++...+. ++.+.++++++..|++++... ..+...|+++|.+.
T Consensus 275 ~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l 332 (345)
T 2qfz_A 275 DGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRL 332 (345)
T ss_dssp TTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHH
Confidence 46789999777744 456789999999999998764 22345678877653
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=8.8e-48 Score=374.26 Aligned_cols=245 Identities=23% Similarity=0.328 Sum_probs=211.5
Q ss_pred CCHHHHHHHHHcCCCCchhHHHHHHhhcchhhccc-------CchHHHHHHHHHhcC----CCCcchhhHhhccCCCCCC
Q 018112 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG----KVTPATKQIDHDLPRTFPG 172 (360)
Q Consensus 104 ~~~~klk~~~~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~----~~~~~~~qI~~Dv~Rt~~~ 172 (360)
.+.++||+++++|||+.+|+.+|+.++|+.+.... ...+.|.++.++... .+.+..+||++||+||+|+
T Consensus 21 ~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~ 100 (396)
T 1fkm_A 21 INQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPH 100 (396)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCC
Confidence 47899999999999999999999999998754321 123568888876422 2345678999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhc------------------C----------HHHHHH
Q 018112 173 HPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------T----------EEDAFW 224 (360)
Q Consensus 173 ~~~f~~~~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~------------------~----------Ee~aF~ 224 (360)
+++|+.+.+++.|+|||.+|+.+||++|||||||+|||+||+++. + |++|||
T Consensus 101 ~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~ 180 (396)
T 1fkm_A 101 IPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFW 180 (396)
T ss_dssp SGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999998751 1 999999
Q ss_pred HHHHHHHhccccccccCCCccchHHHHHHHHHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHHH
Q 018112 225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYHL 304 (360)
Q Consensus 225 ~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~L 304 (360)
||+++|+++ +++|.+++++++..+.+++.+|+.++|+||+||++.|+++.+|+++||+|+|+++||++.++||||.++
T Consensus 181 ~f~~lm~~~--~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l 258 (396)
T 1fkm_A 181 CLTKLLEQI--TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 258 (396)
T ss_dssp HHHHHHGGG--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 999999986 789999999999999999999999999999999999999999999999999999999999999999543
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Q 018112 305 ----------------------------------------------------------------------VFISIACTKY 314 (360)
Q Consensus 305 ----------------------------------------------------------------------~~i~lail~~ 314 (360)
+|+|+|++..
T Consensus 259 ~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~ 338 (396)
T 1fkm_A 259 SETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIK 338 (396)
T ss_dssp HHHC------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHH
Confidence 4688889887
Q ss_pred HHHhcCCCchhhHHHHHhhcccCc--ccccchHHhhhh
Q 018112 315 TELAGGCTVTEKSVLCLHQFSDNS--ASVGCPILRRSK 350 (360)
Q Consensus 315 ~e~~l~~~~~e~~~~~l~~l~~~~--~~~~~~i~~~~~ 350 (360)
.+..+...++++++..|++++..- ..+...|+++|.
T Consensus 339 ~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~ 376 (396)
T 1fkm_A 339 WSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAF 376 (396)
T ss_dssp THHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 766666678899999999988652 234456777775
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=3.1e-45 Score=343.12 Aligned_cols=238 Identities=15% Similarity=0.218 Sum_probs=200.8
Q ss_pred CCHHHHHHHHHcC---CCCchhHHHHHHhhcchhhcccCchHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCCCCCCh-
Q 018112 104 ANAITLKKLIRKG---IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP- 179 (360)
Q Consensus 104 ~~~~klk~~~~~G---IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~- 179 (360)
.+.++||++++.| +|+++|+.||+.++|+....... .|...... +++..+||++||+||+|+++.|..+
T Consensus 32 ~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~---~~~~~~~~----~~~~~~qI~~Dv~RT~~~~~~~~~~~ 104 (292)
T 4hl4_A 32 TDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP---ISGKNLRQ----MSKDYQQVLLDVRRSLRRFPPGMPEE 104 (292)
T ss_dssp CCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS---CCCTTHHH----HCTTHHHHHHHHHTTGGGSCTTSCHH
T ss_pred ccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC---chhhhhcc----cchhHHHHHHhhhhhhhhccCCCCHH
Confidence 5789999999854 89999999999999998764322 23222111 3678999999999999999998653
Q ss_pred ---hhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHHHH
Q 018112 180 ---DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDL 256 (360)
Q Consensus 180 ---~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~l 256 (360)
.+++.|+|||.+|+.+||++|||||||+|||+||+++ +|++|||||++++++.. ++||.+++++++..+.+++.+
T Consensus 105 ~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l-~~~~~~~~~~~~~~~~~l~~l 182 (292)
T 4hl4_A 105 QREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHL-RDFMDPTMDNTKHILNYLMPI 182 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTT-TGGGCSSSCTTTGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999 79999999999999765 799999999999999999999
Q ss_pred HHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCC-hHHHHHHHHHHH-------HHHHHHHHHHH-HHhcCC-Cchhh
Q 018112 257 LVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLP-SEVRQILITYHL-------VFISIACTKYT-ELAGGC-TVTEK 326 (360)
Q Consensus 257 L~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp-~~~~~rlwD~~L-------~~i~lail~~~-e~~l~~-~~~e~ 326 (360)
++.++|+||+||++.++ ..+|+++||+|+|++++| ++.++||||.++ +|+++|++... +.++.+ .+.+.
T Consensus 183 l~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d~~~ 261 (292)
T 4hl4_A 183 IDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMAS 261 (292)
T ss_dssp HHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTSCCSTTH
T ss_pred HHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999 479999999999999996 999999999764 78999998877 555565 35677
Q ss_pred HHHHHhhcccCcccccchHHhhhhccc
Q 018112 327 SVLCLHQFSDNSASVGCPILRRSKGSI 353 (360)
Q Consensus 327 ~~~~l~~l~~~~~~~~~~i~~~~~~~~ 353 (360)
....+++++.... ...|+++|....
T Consensus 262 l~~~l~~lp~~~d--~~~li~~A~~l~ 286 (292)
T 4hl4_A 262 VHHLLSQIPQDLP--YETLISRAGDLF 286 (292)
T ss_dssp HHHHHHSCCSSCC--HHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHH
Confidence 7778888886554 345788887543
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=273.63 Aligned_cols=230 Identities=17% Similarity=0.189 Sum_probs=172.4
Q ss_pred CCCHHHHHHHHHcC-CCCchhHHHHHHhhcchhhcccCc-------hHHHHHHHHHhcCCCCcchhhHhhccCCCCCCCC
Q 018112 103 LANAITLKKLIRKG-IPPVLRPKVWFSLSGAAKKKSTVP-------ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHP 174 (360)
Q Consensus 103 ~~~~~klk~~~~~G-IP~~~R~~vW~~llg~~~~~~~~~-------~~~y~~l~~~~~~~~~~~~~qI~~Dv~Rt~~~~~ 174 (360)
..|.++||+++|+| ||+.+|+.||+.|+|+.+...+.. .+.|+++.++. ...++|+.+. |.+.
T Consensus 37 ~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~-----~~~r~I~~~t----P~~~ 107 (294)
T 3qwl_A 37 RLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHAL-----KVVRFVSDAT----PQAE 107 (294)
T ss_dssp BCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHH-----HHTTSCCTTS----CHHH
T ss_pred CCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhh-----hhhhhhhccC----chHH
Confidence 46999999999999 999999999999999966544332 24577777662 2334444322 2111
Q ss_pred CCCChhhHHHHHHHHHHhhccCCCCCcccchHHHHHHHHHhhcCHHHHHHHHHHHHHhccccccccCCCccchHHHHHHH
Q 018112 175 WLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFK 254 (360)
Q Consensus 175 ~f~~~~~~~~L~rIL~ay~~~~p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~ 254 (360)
.|......+. .....++. .+++. ++|||..||++++.++.+|++|||||+++|++. +++|.++++|++.. ++
T Consensus 108 vfl~~~~~~~-~~l~~~~~-~~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l--~~~f~~~~~gl~~~---l~ 179 (294)
T 3qwl_A 108 VYLRMYQLES-GKLPRSPS-FPLEP-DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQL--NTKYRDSLPQLPKA---FE 179 (294)
T ss_dssp HHHHHHHHHH-TCCCSSTT-SCCCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH--HTTTTTTGGGHHHH---HH
T ss_pred HHHHHHHccc-cccccccc-CCccc-chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhhCCChhHHHHH---HH
Confidence 1111000000 00011111 13333 469999999999988889999999999999985 68999999998754 58
Q ss_pred HHHHhhCHHHHhhHHhcCCCcchhhhHHHHHhcCCCCChHHHHHHHHHH-------HHHHHHHHHHHH-HHhcCCCchhh
Q 018112 255 DLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSEVRQILITYH-------LVFISIACTKYT-ELAGGCTVTEK 326 (360)
Q Consensus 255 ~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~~rlwD~~-------L~~i~lail~~~-e~~l~~~~~e~ 326 (360)
++++.++|+|++||++.|+.+.+++.+||+|+|++++|++.++||||.+ ++++|+|+++.. +.++.+...++
T Consensus 180 ~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll~~~~~~~ 259 (294)
T 3qwl_A 180 QYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEK 259 (294)
T ss_dssp HHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999988888899999999999999999999976 478999998877 45556666699
Q ss_pred HHHHHhhcccCcccccchHHhhhhcc
Q 018112 327 SVLCLHQFSDNSASVGCPILRRSKGS 352 (360)
Q Consensus 327 ~~~~l~~l~~~~~~~~~~i~~~~~~~ 352 (360)
++..|++++..- ...|+++|.+.
T Consensus 260 il~~Lq~lp~~d---i~~ll~~A~~l 282 (294)
T 3qwl_A 260 ITKFLENIPQDS---SDAIVSKAIDL 282 (294)
T ss_dssp HHHHHTTCCSTT---HHHHHHHHHHH
T ss_pred HHHHHHcCCccc---HHHHHHHHHHH
Confidence 999999998652 45678888764
No 8
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=24.40 E-value=62 Score=23.03 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=18.7
Q ss_pred HHHHHcCCCCchhHHHHHHhhcch
Q 018112 110 KKLIRKGIPPVLRPKVWFSLSGAA 133 (360)
Q Consensus 110 k~~~~~GIP~~~R~~vW~~llg~~ 133 (360)
..+..-.||...|.++|+-+....
T Consensus 42 edL~~mkIpe~~R~kIWk~l~e~~ 65 (80)
T 1dxs_A 42 EDLGALKIPEQYRMTIWRGLQDLK 65 (80)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHC-
T ss_pred HHHHhCCCCHHHHHHHHhhHHHhc
Confidence 345567799999999999987654
No 9
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=23.40 E-value=30 Score=20.21 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=10.7
Q ss_pred cCCCCCcccchHHHHH
Q 018112 195 RDSDVGYCQGLNYVAA 210 (360)
Q Consensus 195 ~~p~igY~QGm~~Iaa 210 (360)
.+.-.|||||--+...
T Consensus 13 ehtmcgycqgplymtc 28 (40)
T 1erd_A 13 EHTMCGYCQGPLYMTC 28 (40)
T ss_dssp CGGGGGGSCHHHHHHH
T ss_pred cccccccccCCeeEEE
Confidence 3455799999655543
No 10
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=14.50 E-value=45 Score=23.60 Aligned_cols=11 Identities=45% Similarity=0.522 Sum_probs=9.0
Q ss_pred CcccchHHHHH
Q 018112 200 GYCQGLNYVAA 210 (360)
Q Consensus 200 gY~QGm~~Iaa 210 (360)
-|.|||.++++
T Consensus 17 lyfqgM~~~a~ 27 (96)
T 2js3_A 17 LYFQGMTDTAA 27 (96)
T ss_dssp BTTBSTTTHHH
T ss_pred eeeccccccCH
Confidence 49999998863
Done!