BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018113
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A4N|A Chain A, Crystal Structure Of Aminoglycoside 6'-N-Acetyltransferase
Complexed With Coenzyme A
pdb|2A4N|B Chain B, Crystal Structure Of Aminoglycoside 6'-N-Acetyltransferase
Complexed With Coenzyme A
Length = 182
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 198 VAPFDAAACFLAIGMVIILS-SWTENYGDPS--ESKDLLTQFRGAAVAIASDEKIALLGA 254
++ FD L + +L +W E YGD S E ++++ R A A+ DE + +GA
Sbjct: 3 ISEFDRNNPVLKDQLSDLLRLTWPEEYGDSSAEEVEEMMNPERIAVAAVDQDELVGFIGA 62
Query: 255 I 255
I
Sbjct: 63 I 63
>pdb|1B87|A Chain A, Crystal Structure Of An Aminoglycoside
6'-N-Acetyltransferase
Length = 181
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 198 VAPFDAAACFLAIGMVIILS-SWTENYGDPS--ESKDLLTQFRGAAVAIASDEKIALLGA 254
++ FD L + +L +W E YGD S E ++++ R A A+ DE + +GA
Sbjct: 3 ISEFDRNNPVLKDQLSDLLRLTWPEEYGDSSAEEVEEMMNPERIAVAAVDQDELVGFIGA 62
Query: 255 I 255
I
Sbjct: 63 I 63
>pdb|1N71|A Chain A, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|B Chain B, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|C Chain C, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|D Chain D, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
Length = 180
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 198 VAPFDAAACFLAIGMVIILS-SWTENYGDPS--ESKDLLTQFRGAAVAIASDEKIALLGA 254
++ FD L + +L +W E YGD S E ++++ R A A+ DE + +GA
Sbjct: 3 ISEFDRNNPVLKDQLSDLLRLTWPEEYGDSSAEEVEEMMNPERIAVAAVDQDELVGFIGA 62
Query: 255 I 255
I
Sbjct: 63 I 63
>pdb|2V8N|A Chain A, Wild-Type Structure Of Lactose Permease
pdb|2V8N|B Chain B, Wild-Type Structure Of Lactose Permease
Length = 417
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 19/112 (16%)
Query: 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHS 121
+L+ K + G +F A S+LF + G L+DK G ++ Y L I + +
Sbjct: 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK----YLLWIITGMLVMFA 88
Query: 122 P----------QYKILMIGRILGGIATSLLFS----AFESWLVAEHNKRGFE 159
P QY IL +G I+GGI F+ A E+++ + FE
Sbjct: 89 PFFIFIFGPLLQYNIL-VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFE 139
>pdb|1PV6|A Chain A, Crystal Structure Of Lactose Permease
pdb|1PV6|B Chain B, Crystal Structure Of Lactose Permease
pdb|1PV7|A Chain A, Crystal Structure Of Lactose Permease With Tdg
pdb|1PV7|B Chain B, Crystal Structure Of Lactose Permease With Tdg
pdb|2CFP|A Chain A, Sugar Free Lactose Permease At Acidic Ph
pdb|2CFQ|A Chain A, Sugar Free Lactose Permease At Neutral Ph
Length = 417
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 19/112 (16%)
Query: 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHS 121
+L+ K + G +F A S+LF + G L+DK G ++ Y L I + +
Sbjct: 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK----YLLWIITGMLVMFA 88
Query: 122 P----------QYKILMIGRILGGIATSLLFS----AFESWLVAEHNKRGFE 159
P QY IL +G I+GGI F+ A E+++ + FE
Sbjct: 89 PFFIFIFGPLLQYNIL-VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFE 139
>pdb|2Y5Y|A Chain A, Crystal Structure Of Lacy In Complex With An Affinity
Inactivator
pdb|2Y5Y|B Chain B, Crystal Structure Of Lacy In Complex With An Affinity
Inactivator
Length = 423
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP-------- 122
K + G +F A S+LF + G L+DK G ++ Y L I + +P
Sbjct: 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK----YLLWIITGMLVMFAPFFIFIFGP 97
Query: 123 --QYKILMIGRILGGIATSLLFS----AFESWLVAEHNKRGFE 159
QY IL +G I+GGI F+ A E+++ + FE
Sbjct: 98 LLQYNIL-VGSIVGGIYLGFSFNAGCPAVEAFIEKVSRRSNFE 139
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 231 DLLTQFRGAAVAI--ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGF 285
+LLT R AVA+ A D K LG++ ++G++Y +F W N E+ +
Sbjct: 594 ELLTLIRPNAVALVDAFDFKDMTLGSVLGRYDGNVYENLFEWAKKSPLNKTEVHESY 650
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,606,229
Number of Sequences: 62578
Number of extensions: 359929
Number of successful extensions: 781
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 8
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)