Query 018113
Match_columns 360
No_of_seqs 493 out of 1499
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 10:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 8.2E-28 2.8E-32 219.8 28.2 262 57-331 46-343 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.8E-25 6.2E-30 205.0 25.3 265 36-312 23-321 (451)
3 4gc0_A D-xylose-proton symport 99.9 8E-23 2.7E-27 189.5 25.6 270 37-312 8-343 (491)
4 2gfp_A EMRD, multidrug resista 99.9 1E-23 3.4E-28 188.8 14.3 241 54-310 17-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 1.9E-20 6.4E-25 173.6 26.6 146 60-214 37-192 (491)
6 2cfq_A Lactose permease; trans 99.8 2.5E-19 8.7E-24 162.5 10.6 258 54-325 24-301 (417)
7 2xut_A Proton/peptide symporte 99.7 1.3E-16 4.4E-21 149.0 17.3 168 40-215 15-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.1E-10 3.9E-15 106.3 18.8 148 57-215 272-430 (451)
9 3o7q_A L-fucose-proton symport 99.3 1.3E-09 4.6E-14 98.8 23.1 142 57-210 278-424 (438)
10 2cfq_A Lactose permease; trans 99.0 3.7E-09 1.3E-13 95.5 14.0 141 71-221 258-402 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 1.3E-08 4.6E-13 93.8 16.9 146 58-215 304-468 (491)
12 4gc0_A D-xylose-proton symport 98.9 1.9E-08 6.7E-13 92.6 15.7 165 58-227 298-471 (491)
13 2gfp_A EMRD, multidrug resista 98.5 3.1E-08 1.1E-12 87.9 3.6 124 58-192 220-352 (375)
14 2xut_A Proton/peptide symporte 98.2 8.5E-06 2.9E-10 75.6 11.7 93 74-167 337-450 (524)
15 2g9p_A Antimicrobial peptide l 68.8 1.9 6.4E-05 20.0 0.9 14 91-104 2-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.96 E-value=8.2e-28 Score=219.81 Aligned_cols=262 Identities=13% Similarity=0.146 Sum_probs=185.8
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HH---HhcchHHHHHHHHH
Q 018113 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMIGRI 132 (360)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~---~~~~~~~~l~~~r~ 132 (360)
.+..|.+.+++|.|+.+.|++.+...++..+++++.|+++||+|||++++.+.++.+++. ++ .++++++.++++|+
T Consensus 46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (438)
T 3o7q_A 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 577999999999999999999999999999999999999999999999999999999977 66 78899999999999
Q ss_pred HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-------------
Q 018113 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG------------- 196 (360)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~------------- 196 (360)
+.|++.+...+.... +++|. ++|++..+..... ..+|..+++.+++.+.+.....
T Consensus 126 l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~--------~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (438)
T 3o7q_A 126 IIAAGLGCLETAANP-FVTVLGPESSGHFRLNLAQTF--------NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHH-HHHHSSCSTTHHHHHHHHHHH--------HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred HHHhhHHHhhhhHHH-HHHHHcCchhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence 999999999888855 88887 4555533333332 2355555555555555112222
Q ss_pred -----------CchhhhhhHHHHHHHHHHHh-hhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHH
Q 018113 197 -----------PVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY 264 (360)
Q Consensus 197 -----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
|+..|...+.+..+...... .+.||+++++++++ ..++.++..++++|+|+++.......+......
T Consensus 197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (438)
T 3o7q_A 197 LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA-KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT 275 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-cccchhhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 67777665554444333332 33444433221111 122233456678999999887776666555444
Q ss_pred HHHHhhhccc-cCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhH
Q 018113 265 TFVFLWTPAL-SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPI 331 (360)
Q Consensus 265 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 331 (360)
. ...+.|.| .++..+.+. +.......++.++++++.+++.||++||+ .+.....+..+......
T Consensus 276 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~~~~~~~~~~~~~~ 343 (438)
T 3o7q_A 276 A-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAMALCLISA 343 (438)
T ss_dssp H-HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHH
Confidence 4 57888988 777666655 46667778889999999999999999884 44455544444444333
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1.8e-25 Score=204.96 Aligned_cols=265 Identities=12% Similarity=0.087 Sum_probs=184.9
Q ss_pred cchhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHH
Q 018113 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (360)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (360)
++.++..+....+..+..+++ .+.+|.+.+++ .++.+.|++.+...++..+++++.|+++||+|||+++..+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344455555555555555554 56789999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHh----cchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 018113 112 YILSC-ITKH----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG 183 (360)
Q Consensus 112 ~~~~~-l~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~ 183 (360)
.+++. ++++ +++++.++++|++.|++.+...+.... ++.|. ++|++..+.... ... +|..+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~----~~~----~g~~~g~ 172 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSVWNC----AHN----VGGGIPP 172 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHHHHH----HHH----HHHTSHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHHHCCchhhhHHHHHHHH----HHH----HHHHHHH
Confidence 99987 7788 899999999999999999999888866 88886 455554333332 223 4445555
Q ss_pred hhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhccccCCC-----Cc-chh-------HHH-H--HHH-HHHHHhcc
Q 018113 184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP-----SE-SKD-------LLT-Q--FRG-AAVAIASD 246 (360)
Q Consensus 184 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~-------~~~-~--~~~-~~~~~~~~ 246 (360)
.+++.+.+..+ +|+..|++.+.+.++..+......||++++. ++ .++ ..+ + .++ ..++.+++
T Consensus 173 ~~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (451)
T 1pw4_A 173 LLFLLGMAWFN-DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPN 251 (451)
T ss_dssp HHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSC
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcC
Confidence 55555444444 1556676666555544444333344432211 00 000 000 0 001 13567888
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhc--CCCh
Q 018113 247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRV 312 (360)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~ 312 (360)
|+++...+...+.....+. ...+.|.|.++..+.+. +.......++.+++.++.+++.||+ ++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 321 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 8888877766665555555 57889999988777665 4667777889999999999999999 7774
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.92 E-value=8e-23 Score=189.52 Aligned_cols=270 Identities=14% Similarity=0.068 Sum_probs=164.0
Q ss_pred chhHHHHHHHHHHHHHhhhh----hHHHHHHHHhhCCC--------hhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHH
Q 018113 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA 104 (360)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~ 104 (360)
++.+.+..++.+..+.+++| ++.+|.+.++++.+ .++.|++.+...++..++++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34444444555566677777 34478888777432 3456788888889889999999999999999999
Q ss_pred HHHHHHHHHHHH-HHH------------------hcchHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHH
Q 018113 105 CVTYCLTYILSC-ITK------------------HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQW 162 (360)
Q Consensus 105 l~~~~~~~~~~~-l~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~ 162 (360)
+.++.+++.++. +++ +++|++.++++|+++|++.|...+.. +.+++|. ++|++..+.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~-~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLS-PMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCHHhhhhhHHh
Confidence 999999999876 666 47899999999999999999998888 4499997 566665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh--cccCCCCchhhhhhHHHHHHHHHHHhhhhcccc------CCCCcchhHHH
Q 018113 163 LSITFSKAIFLGNGLVAILSGLFGNLLV--DSFSLGPVAPFDAAACFLAIGMVIILSSWTENY------GDPSESKDLLT 234 (360)
Q Consensus 163 ~~~~~~~~~~~g~~~g~~~~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 234 (360)
.+.... .|..++..++........ ....+.|+..+.......++..... ...||++ ++++++++..+
T Consensus 167 ~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~ 241 (491)
T 4gc0_A 167 NQFAII----FGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILR 241 (491)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhh----hhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHH
Confidence 444433 333233333322221110 0112446666666555555444444 4555542 22222221111
Q ss_pred HHHH----------------------HHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch--hHHHHHH
Q 018113 235 QFRG----------------------AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATF 290 (360)
Q Consensus 235 ~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 290 (360)
+... ......+.++.........+.+.........|.|.+.++....+. .......
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (491)
T 4gc0_A 242 KIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV 321 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHH
Confidence 1100 011122334444433334444444444455666665544322222 2344556
Q ss_pred HHHHHHHHHHHHHHHhhcCCCh
Q 018113 291 MLASMLGSSLASRLMARSPPRV 312 (360)
Q Consensus 291 ~~~~~~~~~~~g~l~dr~g~~~ 312 (360)
.+..+++.++.+++.||+|||+
T Consensus 322 ~~~~~~~~~~~~~l~dr~Grr~ 343 (491)
T 4gc0_A 322 GVINLTFTVLAIMTVDKFGRKP 343 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHHHHHHHHHHHHhhcCcc
Confidence 7788899999999999999995
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=1e-23 Score=188.82 Aligned_cols=241 Identities=12% Similarity=0.073 Sum_probs=175.1
Q ss_pred hhhhHHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHH
Q 018113 54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI 132 (360)
Q Consensus 54 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~ 132 (360)
....|..|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+....+++. +..++++++.+++.|+
T Consensus 17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASA 96 (375)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 333677899999999999999999999999999999999999999999999999999999987 7788899999999999
Q ss_pred HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (360)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 209 (360)
+.|++.+...+.... ++.|. ++|++..+...... .+|..+++.+++.+.+.. +|+..+.+.+.+.+
T Consensus 97 l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~ 165 (375)
T 2gfp_A 97 MQGMGTGVGGVMART-LPRDLYERTQLRHANSLLNMGI--------LVSPLLAPLIGGLLDTMW--NWRACYLFLLVLCA 165 (375)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHTSSCCSHHHHHHHHH--------HHHHHHHHHHHHHSSCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHH-HHHHHCCHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 999999988888755 77775 56777444433332 245555666666655543 46677777666655
Q ss_pred HHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCCCcch---hHH
Q 018113 210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFI 286 (360)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 286 (360)
+..+......||++++++++++. +++.++.+|+|+++.......+....... ...+.|.|.++..+.+. +..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~ 240 (375)
T 2gfp_A 166 GVTFSMARWMPETRPVDAPRTRL----LTSYKTLFGNSGFNCYLLMLIGGLAGIAA-FEACSGVLMGAVLGLSSMTVSIL 240 (375)
T ss_dssp HHHCCCCCSSCCCSTTTCCCCCT----TTCSTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccCCCCcccccH----HHHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHH
Confidence 55443434556554433322111 12334567788888776666655555544 57889998887656554 456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 018113 287 FATFMLASMLGSSLASRLMARSPP 310 (360)
Q Consensus 287 ~~~~~~~~~~~~~~~g~l~dr~g~ 310 (360)
.....++.+++.++.+++.||.++
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 241 FILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888888888765
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.88 E-value=1.9e-20 Score=173.61 Aligned_cols=146 Identities=22% Similarity=0.204 Sum_probs=108.6
Q ss_pred HHHHHHh-----hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhh-hcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHH
Q 018113 60 VYYLYST-----YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI 132 (360)
Q Consensus 60 ~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~ 132 (360)
.+++.++ +|.|..+.+++.+...++..+++++.|+++|| +|||+++..+.++.+++. ++++++|++.++++|+
T Consensus 37 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (491)
T 4aps_A 37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSII 116 (491)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHH
T ss_pred HHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455555 99999999999999999999999999999999 899999999999999987 7789999999999999
Q ss_pred HHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHH
Q 018113 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (360)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 209 (360)
+.|++.+...+.... +++|. ++|++ +....... .+..+|..+++.+++.+.+.. +|+..|++.+...+
T Consensus 117 l~g~~~~~~~~~~~~-~~~~~~~~~~~~r--~~~~~~~~----~~~~~g~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 117 LIIIGTGFLKPNVST-LVGTLYDEHDRRR--DAGFSIFV----FGINLGAFIAPLIVGAAQEAA--GYHVAFSLAAIGMF 187 (491)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHSSSCTTHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHH-HHHHHcCcccccc--eeeehHHH----HHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Confidence 999999999888755 88885 33222 11111222 233355566666666666554 46667766655444
Q ss_pred HHHHH
Q 018113 210 IGMVI 214 (360)
Q Consensus 210 ~~~~~ 214 (360)
+..+.
T Consensus 188 ~~~~~ 192 (491)
T 4aps_A 188 IGLLV 192 (491)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.79 E-value=2.5e-19 Score=162.53 Aligned_cols=258 Identities=15% Similarity=0.104 Sum_probs=138.7
Q ss_pred hhhhHHHHHH-HHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH----HHHhcchHH-HH
Q 018113 54 WLQGPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHSPQYK-IL 127 (360)
Q Consensus 54 ~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----l~~~~~~~~-~l 127 (360)
+...|++|.. .+++|.|+.+.|.+.+...++..+++++.|+++||+||||+++.+....++.. ...+++... .+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335776664 45699999999999999999999999999999999999999998887765421 112222111 12
Q ss_pred HHHHHHHHhHhhhhhhhhhh---HHhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhh
Q 018113 128 MIGRILGGIATSLLFSAFES---WLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA 203 (360)
Q Consensus 128 ~~~r~l~G~~~~~~~~~~~~---~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 203 (360)
...+.+.|++.+..++...+ .+..|. ++|+...+... .+..+|..++|.+++.+.+ ++|+..|++
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~g~~~~~~l~~~l~~---~~~~~~f~~ 172 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR--------MFGCVGWALGASIVGIMFT---INNQFVFWL 172 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHS--------SSTTTHHHHHHHHHHHHHH---HCSHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH--------HHHHHHHHHHHHHHHHHHH---hchhHHHHH
Confidence 34455555444433332222 133322 22333211111 1223455556666665554 235566766
Q ss_pred hHHHHHHHHHHHhhhhccccCCC--Ccc--hhHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhHHHHHHhhhccccCCCC
Q 018113 204 AACFLAIGMVIILSSWTENYGDP--SES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279 (360)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (360)
.+...++.........||++++. +++ ++..+...++.++++|+|+++............ +.....+.|.|..+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 251 (417)
T 2cfq_A 173 GSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-YDVFDQQFANFFTSFF 251 (417)
T ss_dssp TTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 54443333333222222221110 000 000000112344678888887765543333322 2223445666554333
Q ss_pred Cc---ch---hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 018113 280 EI---PH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV 325 (360)
Q Consensus 280 ~~---~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 325 (360)
+. +. +.......++.+++.++.++++||+|||+ .+..+.....+
T Consensus 252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~--~l~~~~~~~~~ 301 (417)
T 2cfq_A 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN--ALLLAGTIMSV 301 (417)
T ss_dssp SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH--HHHHHHHHHHH
Confidence 21 11 34556666778889999999999999884 34444433333
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.72 E-value=1.3e-16 Score=149.04 Aligned_cols=168 Identities=13% Similarity=0.171 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhhhhhHH-HHHHHHhhC------CChhhhHHHHHHHHHHHhhhhhhhhhhhhhh-cchHHHHHHHHH
Q 018113 40 NNYLLVYSLMMAGDWLQGPY-VYYLYSTYG------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLT 111 (360)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~ 111 (360)
+......++..+......+. .+++.+++| .|..+.|++.+...++..+++++.|+++||+ |||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33333333333333333344 445667899 9999999999999999999999999999999 999999999999
Q ss_pred HHHHH-HHHhcc-hHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018113 112 YILSC-ITKHSP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (360)
Q Consensus 112 ~~~~~-l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 186 (360)
.+++. +.++++ +++.+++.|++.|++.+...+.... ++.|. ++|++..+... .. ..+..+|..+++.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~-~~----~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNKSLAQKAFD-MF----YFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTTTHHHHHHH-HH----HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH-HHHHHcCccchHHHHHHHH-HH----HHHHHHHHHHHHHHH
Confidence 98877 778888 9999999999999999998888755 88876 44544332211 12 223446667777777
Q ss_pred hhhhcccCCCCchhhhhhHHHHHHHHHHH
Q 018113 187 NLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (360)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (360)
+.+.+.. +|+..|.+.+.+.++..+..
T Consensus 169 ~~l~~~~--g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 169 PLLLKNF--GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp THHHHTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccc--cHHHHHHHHHHHHHHHHHHH
Confidence 7766553 46677777666555444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.31 E-value=1.1e-10 Score=106.32 Aligned_cols=148 Identities=13% Similarity=0.069 Sum_probs=102.1
Q ss_pred hHHHHHHHHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhh--cchHHHHHHHHHHH-HHH-HHHhc--chHHHHHH
Q 018113 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYI-LSC-ITKHS--PQYKILMI 129 (360)
Q Consensus 57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~~~~~~~~-~~~-l~~~~--~~~~~l~~ 129 (360)
..+.|.+.++ +|.++.+.+...+...++..++.++.|++.||+ |||+.+..+..+.. ++. +..+. .+.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 4556777666 899999999999999998899999999999999 99999888877766 555 44444 36777778
Q ss_pred HHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhcccCCCCchhhhhhH
Q 018113 130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGL-VAILSGLFGNLLVDSFSLGPVAPFDAAA 205 (360)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~l~~~~~~~~~~~~~~~~ 205 (360)
..++.|++.+...+.... ++.|. ++|+...+..... .. + |..+++.+.+.+.+..+ +...+...+
T Consensus 352 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~-------~~-~~g~~~~~~~~g~l~~~~g--~~~~~~~~~ 420 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGL-HALELAPKKAAGTAAGFTGLF-------GY-LGGSVAASAIVGYTVDFFG--WDGGFMVMI 420 (451)
T ss_dssp HHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHSSC--SHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHH-HHHHHhchhhhhhHHHHHHHH-------HH-HHHHHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 888899888877776544 66665 3455533222222 22 4 55666666666666544 556666665
Q ss_pred HHHHHHHHHH
Q 018113 206 CFLAIGMVII 215 (360)
Q Consensus 206 ~~~~~~~~~~ 215 (360)
.+.++..+..
T Consensus 421 ~~~~~~~~~~ 430 (451)
T 1pw4_A 421 GGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.26 E-value=1.3e-09 Score=98.84 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=97.2
Q ss_pred hHHHHHH-HHh-hCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHH
Q 018113 57 GPYVYYL-YST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (360)
Q Consensus 57 ~~~~~~~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l 133 (360)
..+.|.+ .++ +|.+..+.+...+...++..++.++.|+++||+|||+.+..+.++..++. +..+.++.+.+.. -++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 356 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTL 356 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHH
Confidence 3455555 554 59999999999999888888999999999999999999999988888876 6667777665444 488
Q ss_pred HHhHhhhhhhhhhhHHhhhc-c-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHH
Q 018113 134 GGIATSLLFSAFESWLVAEH-N-KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (360)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~-~-~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 210 (360)
.|++.+...+...+ +..|. . +|+.. ... ...+ .+|..++|.+.+.+.+..+ +++..+.+.....++
T Consensus 357 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~----~~~~-~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 357 CSAFMSIQYPTIFS-LGIKNLGQDTKYG----SSF----IVMT-IIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHTTHHHHHHH-HHHSSCGGGHHHH----HHH----HHHT-THHHHHHHHHHHHHHHHHT-SSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhhccccccch----hhH----HHHH-HHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence 88888888887755 65554 2 22221 111 1122 2666777777777777655 134455554444333
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.02 E-value=3.7e-09 Score=95.53 Aligned_cols=141 Identities=9% Similarity=-0.000 Sum_probs=91.7
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhHhhhhhhhhhhHH
Q 018113 71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWL 149 (360)
Q Consensus 71 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (360)
..+.+...+...+...++.++.|+++||+|||+++..+..+.+++. +.++.++.+.+++..++.+++.+...+.... +
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445666666666677777889999999999999998888877766 5567778777877778888776665555534 6
Q ss_pred hhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHHHHHHHHHhhhhcc
Q 018113 150 VAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221 (360)
Q Consensus 150 i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (360)
++|. +.|+. .++.....+..+|..++|.+.+.+.+..+ +...|...+.+.++..+......+|
T Consensus 337 ~~~~~p~~~~g~-------~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 337 ITSQFEVRFSAT-------IYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCHHHHHH-------HHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCHHHHHH-------HHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 7765 22332 22222233444666777777777666433 4455666666655555554333443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.99 E-value=1.3e-08 Score=93.77 Aligned_cols=146 Identities=10% Similarity=-0.105 Sum_probs=88.8
Q ss_pred HHHHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHH-----HHHHHHHHHH-HHHhc---------
Q 018113 58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-----TYCLTYILSC-ITKHS--------- 121 (360)
Q Consensus 58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~-----~~~~~~~~~~-l~~~~--------- 121 (360)
...|...+ .++.+..+.+.......+...+++++.|++.||+|||+... .+..+.+++. +....
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 33444444 46776666777777777777788888999999999987654 5666666655 33332
Q ss_pred chHHHHHHHHHHHHhHhhhhhhhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCc
Q 018113 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (360)
Q Consensus 122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~ 198 (360)
.+.+.+.+.-++.|++.+...+.... ++.|. +.|+...+...... . +|..+++.+.+.+.+. +..
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~----~----~g~~i~~~~~~~~~~~---~~~ 451 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISPVGLS-VTTKLAPKAFNSQMMSMWFLSS----S----VGSALNAQLVTLYNAK---SEV 451 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTTHHHH-HHHHHTTTTCSSSSTHHHHHHH----H----HHHHHHHHHGGGGGGS---STT
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHhcc---cHH
Confidence 26677778889999998887777755 77665 55777555443332 3 4444444444444332 233
Q ss_pred hhhhhhHHHHHHHHHHH
Q 018113 199 APFDAAACFLAIGMVII 215 (360)
Q Consensus 199 ~~~~~~~~~~~~~~~~~ 215 (360)
..+...+.+.++..+..
T Consensus 452 ~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 452 AYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555544444444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.94 E-value=1.9e-08 Score=92.64 Aligned_cols=165 Identities=13% Similarity=0.024 Sum_probs=93.9
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHHHHHH-HHHh---c-chHHHHHHHHH
Q 018113 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---S-PQYKILMIGRI 132 (360)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-l~~~---~-~~~~~l~~~r~ 132 (360)
.+.|.+.++.+.+..+.........+...++.++.+.+.||+|||+.++.+.....++. ..+. . .+....++.-+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 377 (491)
T 4gc0_A 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 377 (491)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 44778888888888777766666667677888889999999999999998888777654 2221 1 11122222222
Q ss_pred HHHhHhhhhh-hhhhhHHhhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCchhhhhhHHHH
Q 018113 133 LGGIATSLLF-SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (360)
Q Consensus 133 l~G~~~~~~~-~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 208 (360)
+...+.+... +.. ..+.+|. +.|+...+....... +++.+++.+.|.+..........++...|++.+.+.
T Consensus 378 ~~~~~~~~~~~~~~-~~~~~E~fPt~~R~~~~g~~~~~~~----~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 378 FYVAAFAMSWGPVC-WVLLSEIFPNAIRGKALAIAVAAQW----LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHTTTTHHH-HHHHHHSSCTTTHHHHHHHHHHHHH----HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 2222222222 333 3477886 456554333322222 233333333333322111111123445677777777
Q ss_pred HHHHHHHhhhhccccCCCC
Q 018113 209 AIGMVIILSSWTENYGDPS 227 (360)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~ 227 (360)
++..++.....||+++++-
T Consensus 453 ~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHHHheecCCCCCCH
Confidence 7777777678899887653
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.55 E-value=3.1e-08 Score=87.95 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=80.2
Q ss_pred HHHHHHHH-hhCCChhhhHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHH-HHHHH---HHHh--cchHHHHHHH
Q 018113 58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT-YILSC---ITKH--SPQYKILMIG 130 (360)
Q Consensus 58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~---l~~~--~~~~~~l~~~ 130 (360)
.+.|.+.+ ++|.|+.+.+...+...++..++.++.|++.||+|+| +..+... ...+. .... .++.+.+.+.
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T 2gfp_A 220 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVP 297 (375)
T ss_dssp HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence 33444444 4888999999999988888888999999999999883 2333333 22222 1222 2366677788
Q ss_pred HHHHHhHhhhhhhhhhhHHhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 018113 131 RILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS 192 (360)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~ 192 (360)
.++.|++.+...+.... ++.|. ++|+...+... ....+|..+++.+.+.+.+.
T Consensus 298 ~~l~g~~~~~~~~~~~~-~~~~~~p~~~g~~~g~~~--------~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 298 AALFFFGAGMLFPLATS-GAMEPFPFLAGTAGALVG--------GLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHTSSTTHH-HHHTHHHHHHHHHHHHHH--------HHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHHHHHHHhhHHHHH-HHHHhCCcccchHHHHHH--------HHHHHHHHHHHHHHHHHhcC
Confidence 88999999888787755 66665 44444222222 23336667777777766554
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.22 E-value=8.5e-06 Score=75.60 Aligned_cols=93 Identities=10% Similarity=-0.048 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhh----hhhcc----hHHHHHHHHHHHHHH-HHHhc---------chHHHHHHHHHHHH
Q 018113 74 IGQLFIAGFGSSMLFGTIVGSLA----DKQGR----KRACVTYCLTYILSC-ITKHS---------PQYKILMIGRILGG 135 (360)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~G~l~----Dr~Gr----r~~l~~~~~~~~~~~-l~~~~---------~~~~~l~~~r~l~G 135 (360)
.+.......+...+.+++.+++. ||.|+ ++.+..+.++.+++. +.++. .+.+.+.+..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 44444444444445555666654 55543 345666767666665 44442 36677788889999
Q ss_pred hHhhhhhhhhhhHHhhhc---cccchhhHHHHHHH
Q 018113 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITF 167 (360)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~ 167 (360)
++.+...+.... ++.|. ++|+...+......
T Consensus 417 ~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~ 450 (524)
T 2xut_A 417 FGEVLVSATGLE-FAYSQAPKAMKGTIMSFWTLSV 450 (524)
T ss_dssp HHHHHHHHHHTT-THHHHCCTTCCTTTHHHHGGGH
T ss_pred HHHHHHHHHHHH-HHHHhCcHHHHhHHHHHHHHHH
Confidence 999888777755 66664 56777555444433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=68.84 E-value=1.9 Score=19.98 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=11.4
Q ss_pred hhhhhhhhhcchHH
Q 018113 91 IVGSLADKQGRKRA 104 (360)
Q Consensus 91 ~~G~l~Dr~Grr~~ 104 (360)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999864
Done!