BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018114
         (360 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
           Scattering Curve-Fitting And Homology Modelling
          Length = 1213

 Score = 30.8 bits (68), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 25  NPLHLPRAPFS--RNHHHHHDVIRWPTRRGLFPASYSATVSCLSSG 68
           NP ++P   +S  R  H   D I +  R G +PA+   T  C S+G
Sbjct: 251 NP-YIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG 295


>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
           Nacl Buffer
 pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
           Nacl Buffer
 pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
           Nacl Buffer
          Length = 1213

 Score = 30.8 bits (68), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 25  NPLHLPRAPFS--RNHHHHHDVIRWPTRRGLFPASYSATVSCLSSG 68
           NP ++P   +S  R  H   D I +  R G +PA+   T  C S+G
Sbjct: 251 NP-YIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG 295


>pdb|2QFG|A Chain A, Solution Structure Of The N-Terminal Scr-15 FRAGMENT OF
           Complement Factor H
          Length = 312

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 25  NPLHLPRAPFS--RNHHHHHDVIRWPTRRGLFPASYSATVSCLSSG 68
           NP ++P   +S  R  H   D I +  R G +PA+   T  C S+G
Sbjct: 253 NP-YIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,925,931
Number of Sequences: 62578
Number of extensions: 409080
Number of successful extensions: 17524
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 17480
Number of HSP's gapped (non-prelim): 60
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)