BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018114
         (360 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A3DIZ4|RPOB_CLOTH DNA-directed RNA polymerase subunit beta OS=Clostridium thermocellum
            (strain ATCC 27405 / DSM 1237) GN=rpoB PE=3 SV=1
          Length = 1250

 Score = 33.5 bits (75), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 168  DGLKRLNFSVEGEVLDKHCEESENEGGEISVEDLEISPQVLGDLSHDALN 217
            D L+ LN ++EG   + +  E  + G EI+ EDLE+    L DL+ D +N
Sbjct: 1174 DDLEELNVNIEGREDEVNFNEFNDIGEEITDEDLEVEDFDLQDLNDDDIN 1223


>sp|Q9LFE4|Y5673_ARATH WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana
           GN=At5g16730 PE=1 SV=1
          Length = 853

 Score = 32.7 bits (73), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 199 EDLEISPQVLGDLSHDA---LNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCR 250
           EDLE+S Q LG +  +       ++KL+S+L  VKEE    K++ +  E D T R
Sbjct: 387 EDLEVSEQRLGSVEEEVSKNEKEVEKLKSELETVKEE----KNRALKKEQDATSR 437


>sp|B9LD91|ARLY_CHLSY Argininosuccinate lyase OS=Chloroflexus aurantiacus (strain ATCC
           29364 / DSM 637 / Y-400-fl) GN=argH PE=3 SV=1
          Length = 461

 Score = 32.7 bits (73), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 296 ASNNFKGHSIFTNAENLEEVNNE----NCHSID--TSRDYLAKLLFWCMLLGHHL 344
            +    G+S+    E L E+ +E    + +S+D  + RD++A++LF C L+G HL
Sbjct: 197 GAGALAGNSLGVERERLTELLDEFDELSANSLDAVSDRDFVAEVLFACALIGVHL 251


>sp|A9WJR8|ARLY_CHLAA Argininosuccinate lyase OS=Chloroflexus aurantiacus (strain ATCC
           29366 / DSM 635 / J-10-fl) GN=argH PE=3 SV=1
          Length = 461

 Score = 32.7 bits (73), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 296 ASNNFKGHSIFTNAENLEEVNNE----NCHSID--TSRDYLAKLLFWCMLLGHHL 344
            +    G+S+    E L E+ +E    + +S+D  + RD++A++LF C L+G HL
Sbjct: 197 GAGALAGNSLGVERERLTELLDEFDELSANSLDAVSDRDFVAEVLFACALIGVHL 251


>sp|B6QIB3|MDM34_PENMQ Mitochondrial distribution and morphology protein 34 OS=Penicillium
           marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333)
           GN=mdm34 PE=3 SV=1
          Length = 565

 Score = 32.7 bits (73), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 59/143 (41%), Gaps = 25/143 (17%)

Query: 122 ISSMLGLLPSDQFSITVRLSKQPLHSLLVSSIITGISLMRNF-DISVDGLKRLNFSVE-- 178
           +S  + L+ S Q  ITV     PL SL VSS    IS +R++   +++G  R  F  E  
Sbjct: 128 LSGFVVLVFSKQKGITVVFRNDPLESLKVSSTFDSISFVRDYLQKAIEGQLRALFMDELP 187

Query: 179 ------------GEVLDKHCE-------ESENEGGEISVEDLEISPQVLGDLSHDALNYI 219
                        E  D+  E        SE+  G+   + L   PQ   D S +ALN  
Sbjct: 188 AIIHRLSLRLWVPEYRDRESESVNTLDLSSESGPGQ---DPLASPPQDPVDASGNALNPS 244

Query: 220 QKLQSDLSNVKEELNSMKHKNML 242
           +     L +  E  N   HKN+L
Sbjct: 245 EVASLSLDSGVEIHNLFSHKNLL 267


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,502,475
Number of Sequences: 539616
Number of extensions: 5384207
Number of successful extensions: 20292
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 20220
Number of HSP's gapped (non-prelim): 152
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)