Query 018114
Match_columns 360
No_of_seqs 149 out of 182
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 100.0 1E-29 2.3E-34 205.7 9.7 86 251-358 1-86 (86)
2 PF05542 DUF760: Protein of un 99.9 3.2E-28 6.9E-33 197.0 6.6 84 89-173 1-85 (86)
3 PF04508 Pox_A_type_inc: Viral 77.9 3 6.5E-05 27.2 2.9 20 219-238 3-22 (23)
4 PRK00084 ispF 2-C-methyl-D-ery 58.6 9.5 0.00021 35.1 3.0 32 113-146 109-140 (159)
5 TIGR00151 ispF 2C-methyl-D-ery 54.1 13 0.00028 34.1 3.1 33 112-146 105-137 (155)
6 KOG4119 G protein gamma subuni 53.3 16 0.00036 29.6 3.2 44 215-264 5-48 (71)
7 PF04977 DivIC: Septum formati 53.1 25 0.00054 26.8 4.1 22 220-241 20-41 (80)
8 KOG1319 bHLHZip transcription 52.2 16 0.00036 34.9 3.5 33 213-245 108-140 (229)
9 smart00338 BRLZ basic region l 50.2 25 0.00053 26.7 3.7 28 216-243 25-52 (65)
10 PF00170 bZIP_1: bZIP transcri 48.4 32 0.0007 26.1 4.1 26 216-241 25-50 (64)
11 PF00669 Flagellin_N: Bacteria 46.5 91 0.002 26.3 6.9 79 213-291 41-119 (139)
12 COG0245 IspF 2C-methyl-D-eryth 46.0 20 0.00044 33.1 3.1 31 114-146 108-138 (159)
13 PF06005 DUF904: Protein of un 45.2 95 0.0021 24.9 6.4 55 214-291 15-69 (72)
14 cd00554 MECDP_synthase MECDP_s 45.1 22 0.00048 32.5 3.1 43 102-146 94-137 (153)
15 KOG4797 Transcriptional regula 44.6 29 0.00064 30.6 3.7 49 219-273 62-110 (123)
16 PF07716 bZIP_2: Basic region 43.4 39 0.00084 25.0 3.7 28 216-243 24-51 (54)
17 PF06698 DUF1192: Protein of u 42.0 56 0.0012 25.6 4.5 30 208-237 18-48 (59)
18 COG1080 PtsA Phosphoenolpyruva 40.2 68 0.0015 35.1 6.3 73 215-287 396-493 (574)
19 PF14077 WD40_alt: Alternative 39.7 24 0.00051 26.7 2.0 20 221-240 15-34 (48)
20 PF07531 TAFH: NHR1 homology t 38.5 25 0.00055 30.0 2.3 28 264-291 12-40 (96)
21 PF13591 MerR_2: MerR HTH fami 38.1 54 0.0012 26.4 4.1 28 211-238 57-84 (84)
22 TIGR02209 ftsL_broad cell divi 38.1 53 0.0012 25.7 4.0 27 217-243 24-50 (85)
23 PF08336 P4Ha_N: Prolyl 4-Hydr 37.8 51 0.0011 28.4 4.2 32 211-242 16-47 (134)
24 PLN02862 2-C-methyl-D-erythrit 35.3 36 0.00078 32.9 3.0 32 113-146 166-197 (216)
25 PF08826 DMPK_coil: DMPK coile 34.1 71 0.0015 25.1 4.0 25 213-237 35-59 (61)
26 cd04779 HTH_MerR-like_sg4 Heli 34.1 1.1E+02 0.0023 27.0 5.6 31 253-283 100-130 (134)
27 KOG4343 bZIP transcription fac 34.0 53 0.0011 35.9 4.3 30 214-243 299-328 (655)
28 PF10224 DUF2205: Predicted co 33.9 55 0.0012 27.0 3.5 40 219-261 25-64 (80)
29 PF02542 YgbB: YgbB family; I 33.7 39 0.00085 31.1 2.9 31 114-146 108-138 (157)
30 PF00631 G-gamma: GGL domain; 32.3 35 0.00076 26.4 2.0 34 219-258 4-37 (68)
31 PRK09382 ispDF bifunctional 2- 31.8 43 0.00093 34.2 3.2 32 113-146 324-355 (378)
32 PF05377 FlaC_arch: Flagella a 31.0 1.8E+02 0.004 22.6 5.7 20 220-239 3-22 (55)
33 PF14193 DUF4315: Domain of un 30.7 99 0.0021 25.6 4.5 21 248-268 34-56 (83)
34 PF01166 TSC22: TSC-22/dip/bun 29.0 33 0.00072 27.0 1.4 13 259-271 43-55 (59)
35 cd04766 HTH_HspR Helix-Turn-He 28.0 1.1E+02 0.0024 24.5 4.4 29 211-239 59-87 (91)
36 PF10267 Tmemb_cc2: Predicted 27.9 93 0.002 32.5 4.8 49 211-262 263-312 (395)
37 PF10737 GerPC: Spore germinat 27.6 48 0.001 31.0 2.4 23 219-241 1-23 (176)
38 PF08654 DASH_Dad2: DASH compl 27.5 1.6E+02 0.0034 25.3 5.3 51 222-281 2-52 (103)
39 PRK00888 ftsB cell division pr 27.4 64 0.0014 27.4 3.0 25 219-243 29-53 (105)
40 PF02258 SLT_beta: Shiga-like 27.0 49 0.0011 26.8 2.1 20 139-158 31-50 (70)
41 PF08941 USP8_interact: USP8 i 26.4 28 0.00061 32.7 0.7 73 219-293 13-102 (179)
42 PF11853 DUF3373: Protein of u 26.3 55 0.0012 35.1 2.9 24 214-237 28-51 (489)
43 PF11853 DUF3373: Protein of u 25.4 62 0.0013 34.7 3.1 24 217-241 25-48 (489)
44 PRK10884 SH3 domain-containing 25.1 92 0.002 29.5 3.9 25 213-237 89-113 (206)
45 smart00502 BBC B-Box C-termina 24.6 3.3E+02 0.0072 21.7 6.6 76 211-289 44-123 (127)
46 smart00224 GGL G protein gamma 24.6 40 0.00087 26.1 1.2 34 220-259 2-35 (63)
47 PRK10265 chaperone-modulator p 24.1 1.4E+02 0.0031 24.8 4.5 30 210-239 64-93 (101)
48 smart00549 TAFH TAF homology. 24.0 82 0.0018 26.9 3.0 27 264-290 11-38 (92)
49 cd00068 GGL G protein gamma su 23.9 49 0.0011 25.1 1.5 35 220-260 2-36 (57)
50 PF08941 USP8_interact: USP8 i 23.6 27 0.00058 32.9 0.0 66 217-291 4-70 (179)
51 PF08537 NBP1: Fungal Nap bind 23.2 83 0.0018 32.2 3.3 37 86-131 79-115 (323)
52 KOG4098 Molecular chaperone Pr 23.1 1.1E+02 0.0024 27.9 3.7 43 221-263 19-61 (140)
53 KOG0286 G-protein beta subunit 22.6 1.3E+02 0.0028 30.9 4.5 38 217-262 2-39 (343)
54 KOG2483 Upstream transcription 22.6 1.1E+02 0.0024 29.8 3.9 32 213-244 101-132 (232)
55 COG1080 PtsA Phosphoenolpyruva 22.4 1E+02 0.0022 33.8 4.0 45 73-124 446-492 (574)
56 PHA02557 22 prohead core prote 21.1 2.5E+02 0.0055 28.2 6.1 33 211-243 135-167 (271)
57 PF14197 Cep57_CLD_2: Centroso 20.5 1.5E+02 0.0032 23.6 3.7 24 214-237 44-67 (69)
58 TIGR03545 conserved hypothetic 20.3 2.8E+02 0.0061 30.1 6.8 21 327-347 291-311 (555)
59 KOG0709 CREB/ATF family transc 20.1 1E+02 0.0022 33.1 3.3 69 213-284 268-338 (472)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.96 E-value=1e-29 Score=205.66 Aligned_cols=86 Identities=38% Similarity=0.582 Sum_probs=82.0
Q ss_pred chHHHHHhhCChhHHhhhcCCCCHHHHHHHHHHHHHHHhhcccCCcccCCCCCcccccccccccccCCCcceeeeCHHHH
Q 018114 251 NSLLEYLRFLDPYMVKELSQPSSIEVEEIIHQLVQNILQRFFKDDASNNFKGHSIFTNAENLEEVNNENCHSIDTSRDYL 330 (360)
Q Consensus 251 N~LL~YLrSL~Pe~v~eLS~~aSpeV~eaM~~~V~gLLg~L~s~~~~sk~pPqs~~~~~~~~~~~~d~f~~~I~tsrd~L 330 (360)
|+||+|||+++|+.+++|++++||||+|+|+++|++|||+++ | +++|+++|+|+|++|
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~---------p-------------~~~~~~~i~~s~~~L 58 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLS---------P-------------SDQFNVTIQTSRENL 58 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCC---------C-------------cccCcceeEECHHHH
Confidence 799999999999999999999999999999999999999991 2 489999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHhhhc
Q 018114 331 AKLLFWCMLLGHHLRGLENRLHLTCAVG 358 (360)
Q Consensus 331 ArLLfW~Mm~GY~LR~~E~RleLe~~L~ 358 (360)
|+|||||||+|||||++|+|++|+++|.
T Consensus 59 a~L~~~~mm~GYfLr~~E~R~~Le~sL~ 86 (86)
T PF05542_consen 59 AQLLAWSMMTGYFLRNAEQRLELERSLK 86 (86)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999974
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.95 E-value=3.2e-28 Score=197.02 Aligned_cols=84 Identities=31% Similarity=0.475 Sum_probs=81.0
Q ss_pred hHHHHHHhhcCCchhhhhccCCCHHHHHHHHHHHHHhhcCC-CCCCeeEEEEeccchHHHHHHHHHhhhhhhhhcccccc
Q 018114 89 RVIANMLKRIEPLDNSVISKGISESAKDSMKQTISSMLGLL-PSDQFSITVRLSKQPLHSLLVSSIITGISLMRNFDISV 167 (360)
Q Consensus 89 n~L~~yvqs~~Pe~is~~sk~asp~V~~amk~tI~gmLG~L-Ps~~F~VtItts~E~La~LL~S~mMTGY~L~Rnae~R~ 167 (360)
|.||+||++++||.+++|++++||+|+|+|+++|.+|||.+ |+++|+++|+|++++||+|++++|||||| +||||+|+
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYf-Lr~~E~R~ 79 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYF-LRNAEQRL 79 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHH-HHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999999999999999999999 59999999
Q ss_pred hhhhhc
Q 018114 168 DGLKRL 173 (360)
Q Consensus 168 ~l~e~~ 173 (360)
++.+++
T Consensus 80 ~Le~sL 85 (86)
T PF05542_consen 80 ELERSL 85 (86)
T ss_pred HHHHhc
Confidence 986654
No 3
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=77.95 E-value=3 Score=27.16 Aligned_cols=20 Identities=15% Similarity=0.531 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018114 219 IQKLQSDLSNVKEELNSMKH 238 (360)
Q Consensus 219 I~~Lqsel~slk~EL~~~K~ 238 (360)
|..|+.+|+.|++||.+.++
T Consensus 3 ~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999998764
No 4
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=58.58 E-value=9.5 Score=35.06 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 113 SAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 113 ~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
.-+++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 109 p~~~~m~~~la~~L~-i~~~~V~iKatT~-E~lg 140 (159)
T PRK00084 109 PHIEEMRANIAEDLG-IPLDDVNVKATTT-EKLG 140 (159)
T ss_pred HHHHHHHHHHHHHhC-CCcceEEEEEecC-CCCC
Confidence 478999999999999 5999999999887 6553
No 5
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=54.07 E-value=13 Score=34.10 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 112 ESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 112 p~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
...+++|+++|..+|| +|.+..+|+.||+ |.|+
T Consensus 105 ~p~~~~m~~~la~~L~-~~~~~V~iKatT~-E~lg 137 (155)
T TIGR00151 105 LPHIPAMRENIAELLG-IPLDSVNVKATTT-EKLG 137 (155)
T ss_pred hHHHHHHHHHHHHHhC-CCcceEEEEEecC-CCCC
Confidence 3478999999999999 5999999999987 6553
No 6
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=53.31 E-value=16 Score=29.59 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCChhH
Q 018114 215 ALNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYM 264 (360)
Q Consensus 215 A~~YI~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~Pe~ 264 (360)
+-+-|.++++.+.+|+.|+...+-+.+ ....+|++|+-...+++
T Consensus 5 ~~~~~~q~k~~VeqLk~e~~~~R~~vS------~a~~el~~y~E~~~~~D 48 (71)
T KOG4119|consen 5 SNSKKPQMKKEVEQLKLEANIERIKVS------KAAAELLEYCETHATED 48 (71)
T ss_pred cccchHHHHHHHHHHHHHHHhhHhhHH------HHHHHHHHHHHhcCccC
Confidence 334467889999999999998865555 34678899988777664
No 7
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.13 E-value=25 Score=26.84 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 018114 220 QKLQSDLSNVKEELNSMKHKNM 241 (360)
Q Consensus 220 ~~Lqsel~slk~EL~~~K~k~~ 241 (360)
..++.++.+++++++.++.++.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~ 41 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENE 41 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777778877777776544
No 8
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=52.22 E-value=16 Score=34.94 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLMES 245 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~lq~ 245 (360)
--|-+||.+|..++..-++|+..+.+..++|++
T Consensus 108 qksidyi~~L~~~k~kqe~e~s~L~k~vtAL~i 140 (229)
T KOG1319|consen 108 QKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKI 140 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357799999999999999999999888787654
No 9
>smart00338 BRLZ basic region leucin zipper.
Probab=50.18 E-value=25 Score=26.74 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
+.||..|+.++..|+.|-.+++.+...+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999988888888887665544
No 10
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.40 E-value=32 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHKNM 241 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k~~ 241 (360)
+.||..|+.++..|+.+...++....
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888777775544
No 11
>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.
Probab=46.47 E-value=91 Score=26.26 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCChhHHhhhcCCCCHHHHHHHHHHHHHHHhhc
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYMVKELSQPSSIEVEEIIHQLVQNILQRF 291 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~Pe~v~eLS~~aSpeV~eaM~~~V~gLLg~L 291 (360)
+-+..++..|+.+++.++.-.+.......+++.....=+.+-+-++.+....++......+++-.+++..-|++++..+
T Consensus 41 p~~~~~~~~l~~~~~~~~~~~~n~~~~~~~l~~~~~al~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~l 119 (139)
T PF00669_consen 41 PAAASRALSLRSQISRLEQYQRNIDDAKSRLSTAETALSSISDILQRARELAVQAANGTNSDEDRQAIAAELQQLLDQL 119 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHhHHHHHHHHHHHH
Confidence 4455677889999988888888877776777776666677778888888888899999999898999988888888877
No 12
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=45.97 E-value=20 Score=33.08 Aligned_cols=31 Identities=23% Similarity=0.590 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 114 AKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 114 V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
-+++|+++|..+|| +|.++.+|+.||+ |+|+
T Consensus 108 ~~~amr~~ia~~L~-i~~~~invKatT~-E~LG 138 (159)
T COG0245 108 YREAMRANIAELLG-IPVDRINVKATTT-EKLG 138 (159)
T ss_pred hHHHHHHHHHHHhC-CCchheEEEEecc-Cccc
Confidence 47899999999998 6889999999987 6664
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.24 E-value=95 Score=24.95 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCChhHHhhhcCCCCHHHHHHHHHHHHHHHhhc
Q 018114 214 DALNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYMVKELSQPSSIEVEEIIHQLVQNILQRF 291 (360)
Q Consensus 214 eA~~YI~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~Pe~v~eLS~~aSpeV~eaM~~~V~gLLg~L 291 (360)
.|.+=|..||-|+..|+++-.+++..+.. |-+-...|. +=..+.+.-|.+|||.+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~----------L~~en~~L~-------------~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEE----------LKEENEQLK-------------QERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHHHHHH-------------HHHHHHHHHHHHHHHhh
Confidence 46667777777777777765555433332 222222221 44556677778888776
No 14
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=45.12 E-value=22 Score=32.51 Aligned_cols=43 Identities=19% Similarity=0.448 Sum_probs=31.8
Q ss_pred hhhhhcc-CCCHHHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 102 DNSVISK-GISESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 102 ~is~~sk-~asp~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
++..+++ +-=...+++|+++|+.+|| +|.++.+|+.+|+ |.|+
T Consensus 94 D~tii~e~PKi~p~~~~m~~~ls~~L~-~~~~~V~iKatT~-E~lg 137 (153)
T cd00554 94 DITIIAERPKISPYREAMRANLAELLG-IPPSRVNIKATTT-EGLG 137 (153)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHhC-CCCceEEEEEecC-CCCC
Confidence 4444444 2223478999999999999 8999999999887 6553
No 15
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=44.63 E-value=29 Score=30.58 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCChhHHhhhcCCCC
Q 018114 219 IQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYMVKELSQPSS 273 (360)
Q Consensus 219 I~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~Pe~v~eLS~~aS 273 (360)
+.-.+.|++-||+++.++..++.+| +..|.||.-+ .+||++++|...-+
T Consensus 62 mfAVREEVe~Lk~qI~eL~er~~~L----e~EN~lLk~~--~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 62 MFAVREEVEVLKEQIRELEERNSAL----ERENSLLKTL--ASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhh--CCHHHHHHHHHhcc
Confidence 3456788888888888888888877 5667776543 35677776655443
No 16
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=43.43 E-value=39 Score=25.00 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
+.|++.|+.++..|+.+-..++.+...|
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888887777777665544
No 17
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.98 E-value=56 Score=25.59 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=24.0
Q ss_pred cCCCC-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018114 208 LGDLS-HDALNYIQKLQSDLSNVKEELNSMK 237 (360)
Q Consensus 208 ~G~l~-veA~~YI~~Lqsel~slk~EL~~~K 237 (360)
+..+| -|=.+||..|+.||..++.++..-+
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577 4567899999999999998887643
No 18
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=40.24 E-value=68 Score=35.10 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-h------h--------------hcc--ccccchHHHHHhhCCh--hHHhhhc
Q 018114 215 ALNYIQKLQSDLSNVKEELNSMKHKNM-L------M--------------ESD--KTCRNSLLEYLRFLDP--YMVKELS 269 (360)
Q Consensus 215 A~~YI~~Lqsel~slk~EL~~~K~k~~-~------l--------------q~q--~~~~N~LL~YLrSL~P--e~v~eLS 269 (360)
-.+=|..++..+.+.|.||++...... . + +.+ .-+.|||-+|.=..+- +.|+.|.
T Consensus 396 ~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSIGTNDLtQYtLA~DR~n~~vs~ly 475 (574)
T COG1080 396 SLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSIGTNDLTQYTLAVDRGNAKVSHLY 475 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEeeecccHHHHHHHHHhcCChhhhhhc
Confidence 334455677777777777777553332 1 1 111 4578999999977664 5799999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 018114 270 QPSSIEVEEIIHQLVQNI 287 (360)
Q Consensus 270 ~~aSpeV~eaM~~~V~gL 287 (360)
+|-.|-|+..|+++|++-
T Consensus 476 ~pl~PAVLrlI~~vi~~a 493 (574)
T COG1080 476 DPLHPAVLRLIKQVIDAA 493 (574)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999999864
No 19
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=39.70 E-value=24 Score=26.75 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 018114 221 KLQSDLSNVKEELNSMKHKN 240 (360)
Q Consensus 221 ~Lqsel~slk~EL~~~K~k~ 240 (360)
+|+.++++|++|++.+|+-|
T Consensus 15 ~l~vrv~eLEeEV~~LrKIN 34 (48)
T PF14077_consen 15 QLRVRVSELEEEVRTLRKIN 34 (48)
T ss_pred hheeeHHHHHHHHHHHHHHh
Confidence 89999999999999998753
No 20
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=38.53 E-value=25 Score=29.96 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=23.6
Q ss_pred HHhhhcCC-CCHHHHHHHHHHHHHHHhhc
Q 018114 264 MVKELSQP-SSIEVEEIIHQLVQNILQRF 291 (360)
Q Consensus 264 ~v~eLS~~-aSpeV~eaM~~~V~gLLg~L 291 (360)
++.+|+.+ .||||.+.++.+|++|+.+-
T Consensus 12 tLi~las~~~spev~~~Vr~LV~~L~~~~ 40 (96)
T PF07531_consen 12 TLIQLASDKQSPEVGENVRELVQNLVDGK 40 (96)
T ss_dssp HHHHHHCCSC-CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHcCC
Confidence 46788888 99999999999999999764
No 21
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=38.10 E-value=54 Score=26.40 Aligned_cols=28 Identities=14% Similarity=0.427 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018114 211 LSHDALNYIQKLQSDLSNVKEELNSMKH 238 (360)
Q Consensus 211 l~veA~~YI~~Lqsel~slk~EL~~~K~ 238 (360)
+..+|..-|..|-.++..|++||..+|+
T Consensus 57 in~~gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 57 INLEGIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6788999999999999999999998864
No 22
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.07 E-value=53 Score=25.70 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 217 NYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 217 ~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
..+..++.++.++++|+..++.++.+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L 50 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDL 50 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777777777777665554
No 23
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=37.85 E-value=51 Score=28.38 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=26.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018114 211 LSHDALNYIQKLQSDLSNVKEELNSMKHKNML 242 (360)
Q Consensus 211 l~veA~~YI~~Lqsel~slk~EL~~~K~k~~~ 242 (360)
+...=.+||..+|.+++.++.-++..++....
T Consensus 16 l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~ 47 (134)
T PF08336_consen 16 LISNLRNYIEELQEKLDTLKRFLDEMKREHEK 47 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455789999999999999999999876553
No 24
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=35.26 E-value=36 Score=32.89 Aligned_cols=32 Identities=13% Similarity=0.387 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 113 SAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 113 ~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
.-+++|+++|..+|| +|.+..+|..+|+ |.|+
T Consensus 166 p~~~~m~~~La~lL~-i~~~~VnIKAtT~-E~LG 197 (216)
T PLN02862 166 PHKEAIRSNLSKLLG-ADPSVVNLKAKTH-EKVD 197 (216)
T ss_pred HHHHHHHHHHHHHhC-CCcceEEEEEecC-CCCC
Confidence 478999999999999 8899999999887 6654
No 25
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.05 E-value=71 Score=25.11 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMK 237 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K 237 (360)
-||...+..|+.+|..|++|+.+.+
T Consensus 35 qeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 35 QEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888889999999998888764
No 26
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.05 E-value=1.1e+02 Score=27.04 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=22.1
Q ss_pred HHHHHhhCChhHHhhhcCCCCHHHHHHHHHH
Q 018114 253 LLEYLRFLDPYMVKELSQPSSIEVEEIIHQL 283 (360)
Q Consensus 253 LL~YLrSL~Pe~v~eLS~~aSpeV~eaM~~~ 283 (360)
|-+++.-++.+.-..+++..||++.-+|+++
T Consensus 100 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (134)
T cd04779 100 LKPIASQTDRAQRMKMTKELSQQVLTLIQSL 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHhHHHHHHH
Confidence 3344444555666688999999999988875
No 27
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=34.01 E-value=53 Score=35.93 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 214 DALNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 214 eA~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
--|+|++.||.+|.++.+|=+.+|++++.|
T Consensus 299 KKKEy~~~Le~rLq~ll~Ene~Lk~ENatL 328 (655)
T KOG4343|consen 299 KKKEYMLGLEARLQALLSENEQLKKENATL 328 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 457999999999999999999999998865
No 28
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=33.87 E-value=55 Score=27.02 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCC
Q 018114 219 IQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLD 261 (360)
Q Consensus 219 I~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~ 261 (360)
|..||.-|..|-...+++|..+..| ..++.-|-+||.+|-
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL---~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKL---ESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4456666666666666666555544 245566778999883
No 29
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=33.74 E-value=39 Score=31.05 Aligned_cols=31 Identities=23% Similarity=0.564 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 114 AKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 114 V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
-+++|+++|..+||. |.++.+|+.||+ |.|+
T Consensus 108 ~~~~m~~~la~~L~~-~~~~V~iKatT~-E~lg 138 (157)
T PF02542_consen 108 YRPAMRENLAKLLGI-PPDRVNIKATTT-EGLG 138 (157)
T ss_dssp GHHHHHHHHHHHHTS--GGGEEEEEE-T-TTSH
T ss_pred HHHHHHHHHHHHhCC-CcceEEEEEecC-CCCC
Confidence 389999999999964 888999999887 6664
No 30
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=32.29 E-value=35 Score=26.42 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHh
Q 018114 219 IQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLR 258 (360)
Q Consensus 219 I~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLr 258 (360)
..+|+.||+.||+||+..+-+.+ ..-.+|.+|+.
T Consensus 4 ~~~l~~ei~~L~~el~~~r~~vS------~a~~~li~y~~ 37 (68)
T PF00631_consen 4 KDQLKREIEQLRQELERERIKVS------KACKELIEYCE 37 (68)
T ss_dssp HHHHHHHHHHHHHHHTS----HH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccceeHH------HHHHHHHHHhc
Confidence 46788888889988887443333 34567777777
No 31
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=31.83 E-value=43 Score=34.20 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 113 SAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 113 ~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
.-+++|+++|..+|| +|.+..+|..||+ |.|+
T Consensus 324 ~~~~~~~~~~~~~l~-~~~~~v~~ka~t~-e~lg 355 (378)
T PRK09382 324 PHKQAMRENLAEILG-IPKDRVSVKATTT-EKLG 355 (378)
T ss_pred HHHHHHHHHHHHHhC-CCcceEEEEEecC-CCCc
Confidence 378999999999999 8889999999887 6654
No 32
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.04 E-value=1.8e+02 Score=22.58 Aligned_cols=20 Identities=20% Similarity=0.592 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 018114 220 QKLQSDLSNVKEELNSMKHK 239 (360)
Q Consensus 220 ~~Lqsel~slk~EL~~~K~k 239 (360)
..||+++.+++-.+..+|++
T Consensus 3 ~elEn~~~~~~~~i~tvk~e 22 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKE 22 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 33
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.72 E-value=99 Score=25.64 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=14.9
Q ss_pred cccchHHHHHhhC--ChhHHhhh
Q 018114 248 TCRNSLLEYLRFL--DPYMVKEL 268 (360)
Q Consensus 248 ~~~N~LL~YLrSL--~Pe~v~eL 268 (360)
.++-++.+.+|++ +|+.+..|
T Consensus 34 ~EN~EIv~~VR~~~mtp~eL~~~ 56 (83)
T PF14193_consen 34 AENLEIVQMVRSMKMTPEELAAF 56 (83)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 5688899999975 56655544
No 34
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=29.04 E-value=33 Score=27.04 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=8.4
Q ss_pred hCChhHHhhhcCC
Q 018114 259 FLDPYMVKELSQP 271 (360)
Q Consensus 259 SL~Pe~v~eLS~~ 271 (360)
..+|+++++++..
T Consensus 43 ~~~pe~l~q~~~~ 55 (59)
T PF01166_consen 43 NASPEQLAQLQSQ 55 (59)
T ss_dssp HCSSSSSTTSSSS
T ss_pred cCCHHHHHHHHhh
Confidence 3567777777654
No 35
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.97 E-value=1.1e+02 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.483 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018114 211 LSHDALNYIQKLQSDLSNVKEELNSMKHK 239 (360)
Q Consensus 211 l~veA~~YI~~Lqsel~slk~EL~~~K~k 239 (360)
++.++.+-|..|..++..|++|+++++++
T Consensus 59 ~~l~~i~~~l~l~~~~~~l~~~l~~l~~~ 87 (91)
T cd04766 59 VNLAGVKRILELEEELAELRAELDELRAR 87 (91)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666677778999999999999998765
No 36
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.91 E-value=93 Score=32.49 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=37.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-ccccchHHHHHhhCCh
Q 018114 211 LSHDALNYIQKLQSDLSNVKEELNSMKHKNMLMESD-KTCRNSLLEYLRFLDP 262 (360)
Q Consensus 211 l~veA~~YI~~Lqsel~slk~EL~~~K~k~~~lq~q-~~~~N~LL~YLrSL~P 262 (360)
++-..=++++.-|.||..||+||....+| ++|| .+...|+|+-|-+.+-
T Consensus 263 LEeqlNd~~elHq~Ei~~LKqeLa~~EEK---~~Yqs~eRaRdi~E~~Es~qt 312 (395)
T PF10267_consen 263 LEEQLNDLTELHQNEIYNLKQELASMEEK---MAYQSYERARDIWEVMESCQT 312 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHhHHHHHHHHHHH
Confidence 44556678899999999999999988765 4566 4556788888877665
No 37
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=27.62 E-value=48 Score=31.03 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 018114 219 IQKLQSDLSNVKEELNSMKHKNM 241 (360)
Q Consensus 219 I~~Lqsel~slk~EL~~~K~k~~ 241 (360)
|..||.++.+|++|++++|++..
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~p~ 23 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQPP 23 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999997654
No 38
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=27.46 E-value=1.6e+02 Score=25.29 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCChhHHhhhcCCCCHHHHHHHH
Q 018114 222 LQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYMVKELSQPSSIEVEEIIH 281 (360)
Q Consensus 222 Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~Pe~v~eLS~~aSpeV~eaM~ 281 (360)
|+.+|.+=|+||..+++-.. -...|..||..|..+ +..|.+++ .-|..+|.
T Consensus 2 l~~ri~eKk~ELe~L~~l~~-------lS~~L~~qle~L~~k-l~~m~dg~-e~Va~Vl~ 52 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRD-------LSADLASQLEALSEK-LETMADGA-EAVASVLA 52 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-HHHHHhcc-HHHHHHHH
Confidence 56788888889998875433 478999999999876 88888876 45555554
No 39
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.36 E-value=64 Score=27.35 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 219 IQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 219 I~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
+.+++.++.++++|+.++++++.+|
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L 53 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQL 53 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888898888888776644
No 40
>PF02258 SLT_beta: Shiga-like toxin beta subunit; InterPro: IPR003189 This family represents the B subunit of shiga-like toxin (SLT or verotoxin) produced by some strains of Escherichia coli associated with hemorrhagic colitis and hemolytic uremic syndrome. SLT s are composed of one enzymatic A subunit and five cell binding B subunits.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2GA4_B 1R4P_D 1BOS_I 4ULL_A 2C5C_I 1QNU_C 1CZW_F 1D1I_C 1CZG_D 2XSC_D ....
Probab=26.96 E-value=49 Score=26.83 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=16.9
Q ss_pred EeccchHHHHHHHHHhhhhh
Q 018114 139 RLSKQPLHSLLVSSIITGIS 158 (360)
Q Consensus 139 tts~E~La~LL~S~mMTGY~ 158 (360)
-|++=||+.+|.|+.+||--
T Consensus 31 ~Ts~wnL~~~L~sa~~~G~~ 50 (70)
T PF02258_consen 31 WTSRWNLQSPLLSAQITGMT 50 (70)
T ss_dssp EE-STTHHHHHHHHHHHTSE
T ss_pred eccCcccccceeeeEEcceE
Confidence 57888999999999999953
No 41
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=26.39 E-value=28 Score=32.74 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcc----------------ccccchHHHHHhhCChhHHhhhcC-CCCHHHHHHHH
Q 018114 219 IQKLQSDLSNVKEELNSMKHKNMLMESD----------------KTCRNSLLEYLRFLDPYMVKELSQ-PSSIEVEEIIH 281 (360)
Q Consensus 219 I~~Lqsel~slk~EL~~~K~k~~~lq~q----------------~~~~N~LL~YLrSL~Pe~v~eLS~-~aSpeV~eaM~ 281 (360)
|..||+++++.+.+|.++|++...++.- .-+++++..+..+|+|.-|..--. -++||. +|+
T Consensus 13 i~ELk~~~aeq~~ql~eqkREl~lLk~yirAlR~sNP~~rni~dq~e~~evm~W~~sL~~ArVtrWGgmISTPD~--~Lq 90 (179)
T PF08941_consen 13 IAELKKEQAEQQQQLSEQKRELELLKEYIRALRSSNPVMRNIGDQLERDEVMQWVNSLPPARVTRWGGMISTPDS--VLQ 90 (179)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHSEBEEES-GGGEESS--H--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCChHHHHhHHHHHHHHHhCChhhcccccCcccCccH--HHH
Confidence 4556666666666666666554433321 115678999999999986655333 223442 456
Q ss_pred HHHHHHHhhccc
Q 018114 282 QLVQNILQRFFK 293 (360)
Q Consensus 282 ~~V~gLLg~L~s 293 (360)
..|..-|...++
T Consensus 91 ~~ir~~L~~sgC 102 (179)
T PF08941_consen 91 AMIRRSLSESGC 102 (179)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHhcCC
Confidence 666666666544
No 42
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.28 E-value=55 Score=35.10 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 018114 214 DALNYIQKLQSDLSNVKEELNSMK 237 (360)
Q Consensus 214 eA~~YI~~Lqsel~slk~EL~~~K 237 (360)
+.++=|+.|++||++||+|+.+++
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~ 51 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLN 51 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 344456666666666666655444
No 43
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.38 E-value=62 Score=34.74 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 018114 217 NYIQKLQSDLSNVKEELNSMKHKNM 241 (360)
Q Consensus 217 ~YI~~Lqsel~slk~EL~~~K~k~~ 241 (360)
+=+..+| ||++|++||+++|++..
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 3455566 99999999999997644
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.05 E-value=92 Score=29.52 Aligned_cols=25 Identities=12% Similarity=0.341 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMK 237 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K 237 (360)
+.+..=+..||.|+.+++.+|++..
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666554
No 45
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.60 E-value=3.3e+02 Score=21.73 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccccccchHHHHHhhCCh---hHHhhhcCCCCHHHHHHHHHHHHH
Q 018114 211 LSHDALNYIQKLQSDLSNVKEELNSMKHKNM-LMESDKTCRNSLLEYLRFLDP---YMVKELSQPSSIEVEEIIHQLVQN 286 (360)
Q Consensus 211 l~veA~~YI~~Lqsel~slk~EL~~~K~k~~-~lq~q~~~~N~LL~YLrSL~P---e~v~eLS~~aSpeV~eaM~~~V~g 286 (360)
+......||..|+.+=..|-.+|+...+... .++.+ ...|-..+..+.- ..=..|..+...+++...+.+...
T Consensus 44 I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q---~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~r 120 (127)
T smart00502 44 IKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQ---LESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIER 120 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 5556667777777777777777777653322 22222 2222222322222 222334456666888877777666
Q ss_pred HHh
Q 018114 287 ILQ 289 (360)
Q Consensus 287 LLg 289 (360)
+-.
T Consensus 121 l~~ 123 (127)
T smart00502 121 LQN 123 (127)
T ss_pred HHH
Confidence 543
No 46
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=24.60 E-value=40 Score=26.12 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhh
Q 018114 220 QKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRF 259 (360)
Q Consensus 220 ~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrS 259 (360)
++++.+++.||+||...+-+.+ ..-.+|..|...
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS------~a~~~li~y~e~ 35 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVS------KAAEELLAYCEQ 35 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHH------HHHHHHHHHHHc
Confidence 5788889999999887655444 345667777654
No 47
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=24.09 E-value=1.4e+02 Score=24.84 Aligned_cols=30 Identities=13% Similarity=0.312 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018114 210 DLSHDALNYIQKLQSDLSNVKEELNSMKHK 239 (360)
Q Consensus 210 ~l~veA~~YI~~Lqsel~slk~EL~~~K~k 239 (360)
++..+|..-|..|=.|+..|++|+.++|++
T Consensus 64 ~in~~gialvl~LLd~i~~Lr~el~~L~~~ 93 (101)
T PRK10265 64 ALDWPGIAVALTLLDEIAHLKQENRLLRQR 93 (101)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999998764
No 48
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=24.04 E-value=82 Score=26.86 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.9
Q ss_pred HHhhhcCCCC-HHHHHHHHHHHHHHHhh
Q 018114 264 MVKELSQPSS-IEVEEIIHQLVQNILQR 290 (360)
Q Consensus 264 ~v~eLS~~aS-peV~eaM~~~V~gLLg~ 290 (360)
++.+|++..+ |||-+-++.+|++|+.+
T Consensus 11 tLi~ls~~~~qpe~~~~Vr~LV~~L~~~ 38 (92)
T smart00549 11 TLIQLSNDISQPEVAERVRTLVLGLVNG 38 (92)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHhC
Confidence 4678999999 99999999999999875
No 49
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=23.92 E-value=49 Score=25.13 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhC
Q 018114 220 QKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFL 260 (360)
Q Consensus 220 ~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL 260 (360)
.+++.+++.|+.||...+-+.+ ..-.+|..|...-
T Consensus 2 ~~~~~~veqLr~el~~~RikvS------~a~~~l~~y~e~~ 36 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVS------KAAAELLKYCEQN 36 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHH------HHHHHHHHHHHhc
Confidence 4678888889988887665544 3456667776544
No 50
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=23.59 E-value=27 Score=32.92 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCChhHHhhhcCCCCHHHHHHHHHH-HHHHHhhc
Q 018114 217 NYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYMVKELSQPSSIEVEEIIHQL-VQNILQRF 291 (360)
Q Consensus 217 ~YI~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~Pe~v~eLS~~aSpeV~eaM~~~-V~gLLg~L 291 (360)
+-|++-+.+|++||+++.++++. +..|.-+=.-|.+|++.+ .-+.|+-.-+.|.|++. |..-...|
T Consensus 4 ~lVq~Qq~~i~ELk~~~aeq~~q---l~eqkREl~lLk~yirAl------R~sNP~~rni~dq~e~~evm~W~~sL 70 (179)
T PF08941_consen 4 ELVQQQQTKIAELKKEQAEQQQQ---LSEQKRELELLKEYIRAL------RSSNPVMRNIGDQLERDEVMQWVNSL 70 (179)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh------cCCCCCcCChHHHHhHHHHHHHHHhC
Confidence 34778899999999999998854 334556667889999987 33445555556777765 44555566
No 51
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=23.20 E-value=83 Score=32.19 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=24.9
Q ss_pred CchhHHHHHHhhcCCchhhhhccCCCHHHHHHHHHHHHHhhcCCCC
Q 018114 86 RGFRVIANMLKRIEPLDNSVISKGISESAKDSMKQTISSMLGLLPS 131 (360)
Q Consensus 86 ~~~n~L~~yvqs~~Pe~is~~sk~asp~V~~amk~tI~gmLG~LPs 131 (360)
.....+|++|+++ |+. -.+-..-|+++-.++=-.||.
T Consensus 79 ~~~~ti~~~iKsv-------FSn--e~qdl~~Mk~a~~ni~~~lp~ 115 (323)
T PF08537_consen 79 RRLRTIWSSIKSV-------FSN--EEQDLTRMKNACTNINSRLPN 115 (323)
T ss_pred cchhHHHHHHHHH-------hCc--cHHHHHHHHHHhhhhhhhcCC
Confidence 3457899999975 333 234456688887777667776
No 52
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.12 E-value=1.1e+02 Score=27.86 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCChh
Q 018114 221 KLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPY 263 (360)
Q Consensus 221 ~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~Pe 263 (360)
.++.+-.+++.||.....+-..|+|+-.+....++-|+.++|.
T Consensus 19 ~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~ 61 (140)
T KOG4098|consen 19 AVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPT 61 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChh
Confidence 4566677888888888888888999988899999999999997
No 53
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=22.58 E-value=1.3e+02 Score=30.94 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCCh
Q 018114 217 NYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDP 262 (360)
Q Consensus 217 ~YI~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~P 262 (360)
+++++|+.|+++|+++|++-+++.. .-.|.+|-..+++
T Consensus 2 ~~~~~l~~Eae~L~~qi~~~r~~~~--------D~~l~q~a~~~~~ 39 (343)
T KOG0286|consen 2 EELEQLRQEAEQLKNQIRDARKKLN--------DVTLAQIAERLES 39 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc--------cccHHHHhhcccc
Confidence 6889999999999999998766533 4455555554444
No 54
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=22.56 E-value=1.1e+02 Score=29.77 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLME 244 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~lq 244 (360)
--|..||+.|+.+...-.+.++.+++++..++
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~ 132 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLK 132 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999998877553
No 55
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=22.41 E-value=1e+02 Score=33.83 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=39.6
Q ss_pred CCccccccCCCCCCchhHHHHHHhhcCC--chhhhhccCCCHHHHHHHHHHHHH
Q 018114 73 NDDFVSTRKSNFDRGFRVIANMLKRIEP--LDNSVISKGISESAKDSMKQTISS 124 (360)
Q Consensus 73 ~~df~s~~~~~~~~~~n~L~~yvqs~~P--e~is~~sk~asp~V~~amk~tI~g 124 (360)
.-||||=-. |-|.||.=.++- +.++.+-.+-+|.|...++++|.+
T Consensus 446 evDFfSIGT-------NDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ 492 (574)
T COG1080 446 EVDFFSIGT-------NDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDA 492 (574)
T ss_pred hCCEeeecc-------cHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHH
Confidence 368998644 999999999986 579999999999999999999975
No 56
>PHA02557 22 prohead core protein; Provisional
Probab=21.11 E-value=2.5e+02 Score=28.17 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=27.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 211 LSHDALNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 211 l~veA~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
++-+..+-|..|+.+|..++++++++..++.++
T Consensus 135 vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l 167 (271)
T PHA02557 135 VPEEKVDVVAEMEEELDEMEEELNELFEENVAL 167 (271)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777889999999999999999998776654
No 57
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.54 E-value=1.5e+02 Score=23.62 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 018114 214 DALNYIQKLQSDLSNVKEELNSMK 237 (360)
Q Consensus 214 eA~~YI~~Lqsel~slk~EL~~~K 237 (360)
+|-.=|..|+.|+..+++||+...
T Consensus 44 ~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 44 DAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366667889999999999888754
No 58
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.34 E-value=2.8e+02 Score=30.13 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 018114 327 RDYLAKLLFWCMLLGHHLRGL 347 (360)
Q Consensus 327 rd~LArLLfW~Mm~GY~LR~~ 347 (360)
++++.+++.|-=+...+|.+.
T Consensus 291 ~~~~~~~~~~y~~~~p~i~~~ 311 (555)
T TIGR03545 291 RKYLQKFLKYYDQAEPLLNKS 311 (555)
T ss_pred HHHHHHHHHHHHHHhHhhccc
Confidence 378888888888888888776
No 59
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=20.09 E-value=1e+02 Score=33.08 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCChhHHhhhcCC--CCHHHHHHHHHHH
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYMVKELSQP--SSIEVEEIIHQLV 284 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~Pe~v~eLS~~--aSpeV~eaM~~~V 284 (360)
.--++||..||+++..--.|=.++++|...+ +..+-.|++=||.|+-..++--.+. +|-=+..++-.+.
T Consensus 268 rkKkeYid~LE~rv~~~taeNqeL~kkV~~L---e~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~~ 338 (472)
T KOG0709|consen 268 RKKKEYIDGLESRVSAFTAENQELQKKVEEL---ELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSFC 338 (472)
T ss_pred HhHhhHHHHHhhhhhhcccCcHHHHHHHHHH---hhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHH
Confidence 4457899999999988877777777776655 2345678888888887644333322 3334555555543
Done!