Query 018114
Match_columns 360
No_of_seqs 149 out of 182
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkp_B MAX protein, MYC proto- 93.2 0.076 2.6E-06 41.4 4.0 33 213-245 43-75 (83)
2 1hlo_A Protein (transcription 91.6 0.14 4.8E-06 39.8 3.6 28 213-240 53-80 (80)
3 1am9_A Srebp-1A, protein (ster 87.0 0.67 2.3E-05 36.3 4.3 29 213-241 46-74 (82)
4 1nkp_A C-MYC, MYC proto-oncoge 86.5 0.64 2.2E-05 37.0 4.0 31 213-243 48-78 (88)
5 1nlw_A MAD protein, MAX dimeri 84.7 1 3.5E-05 35.3 4.3 31 213-243 43-73 (80)
6 3he5_A Synzip1; heterodimeric 80.3 2.1 7.3E-05 30.7 4.1 35 217-258 3-37 (49)
7 4ath_A MITF, microphthalmia-as 78.1 1.7 5.6E-05 35.0 3.4 42 213-261 35-76 (83)
8 1dh3_A Transcription factor CR 72.4 4.3 0.00015 29.8 4.1 29 216-244 21-49 (55)
9 1zme_C Proline utilization tra 63.5 7.8 0.00027 28.0 4.0 25 215-239 42-66 (70)
10 4ati_A MITF, microphthalmia-as 61.9 3.4 0.00012 34.4 2.0 25 213-237 70-94 (118)
11 3he4_B Synzip5; heterodimeric 61.9 10 0.00034 26.9 4.0 31 213-243 6-36 (46)
12 3i00_A HIP-I, huntingtin-inter 61.5 8.1 0.00028 32.6 4.2 33 206-238 29-61 (120)
13 4dzn_A Coiled-coil peptide CC- 57.8 12 0.0004 24.9 3.6 24 219-242 4-27 (33)
14 3re3_A 2-C-methyl-D-erythritol 55.4 6.9 0.00024 34.9 2.9 42 102-146 101-144 (162)
15 2pmp_A 2-C-methyl-D-erythritol 54.9 7.5 0.00026 34.6 3.0 31 114-146 111-141 (160)
16 1t0a_A 2C-methyl-D-erythritol 54.4 7.7 0.00026 34.5 3.0 30 115-146 111-140 (159)
17 2yy0_A C-MYC-binding protein; 54.3 2.7 9.1E-05 30.9 0.0 18 220-237 29-46 (53)
18 1iv3_A 2-C-methyl-D-erythritol 53.1 6.7 0.00023 34.6 2.4 32 112-146 107-138 (152)
19 3f0d_A 2-C-methyl-D-erythritol 52.6 8.4 0.00029 35.0 3.0 42 102-146 118-161 (183)
20 1gx1_A 2-C-methyl-D-erythritol 52.1 8.8 0.0003 34.1 3.0 31 114-146 109-139 (160)
21 2er8_A Regulatory protein Leu3 47.3 10 0.00035 27.7 2.3 23 214-236 46-68 (72)
22 3b6n_A 2-C-methyl-D-erythritol 46.7 12 0.00041 34.1 3.0 33 112-146 134-166 (187)
23 3coq_A Regulatory protein GAL4 43.4 49 0.0017 24.6 5.7 22 215-236 43-64 (89)
24 2dgc_A Protein (GCN4); basic d 40.5 31 0.0011 25.8 4.0 28 216-243 29-56 (63)
25 2z5i_A TM, general control pro 39.2 39 0.0013 24.5 4.3 29 214-242 9-37 (52)
26 1gd2_E Transcription factor PA 38.3 33 0.0011 26.4 4.0 24 216-239 28-51 (70)
27 3v86_A De novo design helix; c 37.6 28 0.00095 22.3 2.8 22 218-239 1-22 (27)
28 1jnm_A Proto-oncogene C-JUN; B 36.8 35 0.0012 25.1 3.7 28 216-243 21-48 (62)
29 1t2k_D Cyclic-AMP-dependent tr 36.6 35 0.0012 24.9 3.7 28 216-243 21-48 (61)
30 2l5g_A GPS2 protein, G protein 35.4 46 0.0016 23.2 3.8 22 214-235 12-33 (38)
31 1lj2_A NSP3-C, nonstructural R 34.7 1.4E+02 0.0049 24.9 7.4 69 213-290 9-86 (110)
32 1ci6_A Transcription factor AT 34.5 47 0.0016 24.6 4.2 26 217-242 23-48 (63)
33 2wt7_A Proto-oncogene protein 34.4 39 0.0014 24.9 3.7 28 216-243 22-49 (63)
34 1hwt_C Protein (heme activator 33.2 16 0.00056 27.0 1.4 22 215-236 56-77 (81)
35 3u5v_A Protein MAX, transcript 33.1 15 0.0005 28.6 1.2 16 213-228 48-63 (76)
36 1pyi_A Protein (pyrimidine pat 30.6 39 0.0013 25.8 3.3 22 216-237 47-68 (96)
37 1a93_B MAX protein, coiled coi 30.4 38 0.0013 23.1 2.7 25 222-246 5-29 (34)
38 1xkm_B Distinctin chain B; por 30.3 39 0.0013 21.4 2.6 14 213-226 7-20 (26)
39 1got_G GT-gamma; complex (GTP- 28.5 15 0.00052 28.5 0.6 36 219-260 19-54 (73)
40 1c4q_A Protein (shiga-like tox 28.2 30 0.001 26.5 2.2 27 132-158 18-49 (69)
41 2oqq_A Transcription factor HY 28.2 54 0.0019 23.3 3.3 28 216-243 2-29 (42)
42 4dzn_A Coiled-coil peptide CC- 27.3 82 0.0028 20.9 3.8 23 216-238 8-30 (33)
43 1w55_A ISPD/ISPF bifunctional 26.7 36 0.0012 33.0 3.0 32 112-146 316-347 (371)
44 2uzh_A 2C-methyl-D-erythritol 25.6 49 0.0017 29.5 3.4 28 114-146 113-140 (165)
45 2qdq_A Talin-1; dimerisation d 24.3 1E+02 0.0034 22.7 4.2 28 212-239 10-37 (50)
46 1r4p_B Sltii B subunit, shiga- 22.3 45 0.0016 25.6 2.2 20 139-158 29-48 (70)
47 1dip_A Delta-sleep-inducing pe 21.1 18 0.00063 28.6 -0.2 13 260-272 45-57 (78)
48 1g6u_A Domain swapped dimer; d 21.0 1E+02 0.0034 22.0 3.5 22 220-241 23-44 (48)
No 1
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=93.25 E-value=0.076 Score=41.41 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLMES 245 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~lq~ 245 (360)
-.|.+||..|+.++..|+.|++++++++.+|+.
T Consensus 43 ~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 43 DKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999988776543
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=91.64 E-value=0.14 Score=39.80 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKN 240 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~ 240 (360)
-.|.+||..|+.++..|++|+..++++|
T Consensus 53 ~~Ai~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 53 DKATEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999988753
No 3
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=87.04 E-value=0.67 Score=36.28 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNM 241 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~ 241 (360)
-+|.+||..|+.++..|++|...++....
T Consensus 46 ~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 46 RKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999886543
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=86.52 E-value=0.64 Score=37.05 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
-.|.+||..|+.+...+..+.+.+++++.+|
T Consensus 48 ~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L 78 (88)
T 1nkp_A 48 KKATAYILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998877755
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=84.72 E-value=1 Score=35.33 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
-.|.+||..|+.+...++.|...+++++..|
T Consensus 43 ~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998776644
No 6
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=80.32 E-value=2.1 Score=30.66 Aligned_cols=35 Identities=26% Similarity=0.632 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHh
Q 018114 217 NYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLR 258 (360)
Q Consensus 217 ~YI~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLr 258 (360)
+.+.+|+.|+.+|+.|-..+|+|+. .+.+|..||.
T Consensus 3 nlvaqlenevaslenenetlkkknl-------hkkdliayle 37 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNL-------HKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcc-------cHHHHHHHHH
Confidence 4678999999999999999998877 4788999984
No 7
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=78.09 E-value=1.7 Score=35.01 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCC
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLD 261 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~ 261 (360)
--|.+||..||.+...++++..++|+-.+ .+-.|+.-||.|+
T Consensus 35 ~ksvdYI~~Lq~e~~r~~e~e~r~k~le~-------~n~~l~~riqELE 76 (83)
T 4ath_A 35 KASVDYIRKLQREQQRAKDLENRQKKLEH-------ANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHH
Confidence 46899999999999999999998875322 2445665565554
No 8
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=72.36 E-value=4.3 Score=29.76 Aligned_cols=29 Identities=7% Similarity=0.276 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHKNMLME 244 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k~~~lq 244 (360)
+.||..|+.++..|++|-..++.+...++
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999887766543
No 9
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=63.48 E-value=7.8 Score=28.02 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 018114 215 ALNYIQKLQSDLSNVKEELNSMKHK 239 (360)
Q Consensus 215 A~~YI~~Lqsel~slk~EL~~~K~k 239 (360)
...||+.|+.++..|+++|..++..
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999988653
No 10
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=61.93 E-value=3.4 Score=34.44 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMK 237 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K 237 (360)
-.|.+||..|+.++..|+++....+
T Consensus 70 ~~aieYIk~Lq~~~~~l~~~~~~~~ 94 (118)
T 4ati_A 70 KASVDYIRKLQREQQRAKDLENRQK 94 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999988877655443
No 11
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=61.87 E-value=10 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
-+-++||+.|+.+-.+|+.--.-+|..++.+
T Consensus 6 kelknyiqeleernaelknlkehlkfakael 36 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLKFAKAEL 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Confidence 4678999999987766554444444444433
No 12
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.49 E-value=8.1 Score=32.64 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=28.7
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018114 206 QVLGDLSHDALNYIQKLQSDLSNVKEELNSMKH 238 (360)
Q Consensus 206 ~~~G~l~veA~~YI~~Lqsel~slk~EL~~~K~ 238 (360)
..++.+..+|+.||.+|+.+|..|+-||..++.
T Consensus 29 ~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 29 AQLENMKTESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999873
No 13
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=57.78 E-value=12 Score=24.93 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 018114 219 IQKLQSDLSNVKEELNSMKHKNML 242 (360)
Q Consensus 219 I~~Lqsel~slk~EL~~~K~k~~~ 242 (360)
|.-|+.||..||+|+.++|.+-++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777655443
No 14
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=55.45 E-value=6.9 Score=34.86 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=32.2
Q ss_pred hhhhhccC--CCHHHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 102 DNSVISKG--ISESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 102 ~is~~sk~--asp~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
++..+++. ..|. +++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 101 D~tii~q~PKl~p~-~~~m~~~la~~L~-~~~~~V~vKAtT~-E~LG 144 (162)
T 3re3_A 101 DCTIIAQAPKMLPH-IEKMRACLANILE-IQISQINIKATTT-ERLG 144 (162)
T ss_dssp EEEEECSSSCCGGG-HHHHHHHHHHHHT-SCGGGEEEEEECC-SSCH
T ss_pred EEEEEcCCCcchhH-HHHHHHHHHHHHC-CCCceEEEEEecC-CCcC
Confidence 34444442 4455 7899999999998 7899999999987 7665
No 15
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=54.87 E-value=7.5 Score=34.57 Aligned_cols=31 Identities=13% Similarity=0.399 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 114 AKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 114 V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
-+++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 111 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~LG 141 (160)
T 2pmp_A 111 HKETIRSNLSKLLG-ADPSVVNLKAKTH-EKVD 141 (160)
T ss_dssp GHHHHHHHHHHHHT-CCGGGEEEEEECC-TTCH
T ss_pred HHHHHHHHHHHHHC-CCcceEEEEEecC-CCCC
Confidence 46899999999997 7999999999988 7775
No 16
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=54.40 E-value=7.7 Score=34.46 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 115 KDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 115 ~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
+++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 111 ~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~LG 140 (159)
T 1t0a_A 111 IEDMRQVLAADLN-ADVADINVKATTT-EKLG 140 (159)
T ss_dssp HHHHHHHHHHHTT-CCGGGEEEEEECC-TTCH
T ss_pred HHHHHHHHHHHhC-CCCceEEEEEecC-CCCC
Confidence 6899999999997 7999999999988 7765
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.28 E-value=2.7 Score=30.87 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018114 220 QKLQSDLSNVKEELNSMK 237 (360)
Q Consensus 220 ~~Lqsel~slk~EL~~~K 237 (360)
+.|+.++..|++++.+++
T Consensus 29 ~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 18
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=53.08 E-value=6.7 Score=34.64 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 112 ESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 112 p~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
|. +++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 107 p~-~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~LG 138 (152)
T 1iv3_A 107 PH-RKALVDSLSRLMR-LPQDRIGLTFKTS-EGLA 138 (152)
T ss_dssp GG-HHHHHHHHHHHHT-CCGGGEEEEEECC-TTSS
T ss_pred HH-HHHHHHHHHHHhC-CCCceEEEEEecC-CCCC
Confidence 44 6999999999997 7999999999987 7765
No 19
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=52.61 E-value=8.4 Score=34.96 Aligned_cols=42 Identities=24% Similarity=0.515 Sum_probs=32.3
Q ss_pred hhhhhccC--CCHHHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 102 DNSVISKG--ISESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 102 ~is~~sk~--asp~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
++..+++. ..|. +++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 118 D~tIiaq~PKl~p~-~~~mr~~la~~L~-i~~~~VnVKATT~-E~LG 161 (183)
T 3f0d_A 118 DSTIIAQAPKLAPH-IDAMRANIAADLD-LPLDRVNVKAKTN-EKLG 161 (183)
T ss_dssp EEEEECSSSCCGGG-HHHHHHHHHHHHT-CCGGGEEEEEECC-TTCH
T ss_pred EEEEEcCCCcchhH-HHHHHHHHHHHHC-CCcceEEEEEecC-CCCc
Confidence 34444442 4455 8899999999998 7899999999987 7765
No 20
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=52.07 E-value=8.8 Score=34.12 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 114 AKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 114 V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
-+++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 109 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~LG 139 (160)
T 1gx1_A 109 HIPQMRVFIAEDLG-CHMDDVNVKATTT-EKLG 139 (160)
T ss_dssp GHHHHHHHHHHHTT-CCGGGEEEEEECC-TTCH
T ss_pred HHHHHHHHHHHHhC-CCCceEEEEEccC-CCCC
Confidence 45899999999997 7999999999988 7765
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=47.31 E-value=10 Score=27.68 Aligned_cols=23 Identities=4% Similarity=0.128 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018114 214 DALNYIQKLQSDLSNVKEELNSM 236 (360)
Q Consensus 214 eA~~YI~~Lqsel~slk~EL~~~ 236 (360)
....||..|+.+|..|+..|..+
T Consensus 46 ~~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 46 YKRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999988865
No 22
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=46.68 E-value=12 Score=34.11 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 112 ESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 112 p~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
.--+++|+++|..+|| ++.++.+|+-||+ |.|+
T Consensus 134 ~p~~~~m~~nia~~L~-i~~~~VnVKAtT~-E~LG 166 (187)
T 3b6n_A 134 SPIREEIVRNISSALG-ISESQVSLKGKTH-EQLG 166 (187)
T ss_dssp HHHHHHHHHHHHHHHT-CCGGGEEEEEECC-TTCH
T ss_pred hHHHHHHHHHHHHHhC-CCcceEEEEEecC-CCCC
Confidence 3457899999999997 6889999999887 7775
No 23
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=43.35 E-value=49 Score=24.64 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018114 215 ALNYIQKLQSDLSNVKEELNSM 236 (360)
Q Consensus 215 A~~YI~~Lqsel~slk~EL~~~ 236 (360)
...||..|+.+|..|+..|..+
T Consensus 43 ~~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 43 TRAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999988875
No 24
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=40.54 E-value=31 Score=25.78 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
++||..|+.++..|+.|-..++.+..+|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988888888777655543
No 25
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=39.24 E-value=39 Score=24.50 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018114 214 DALNYIQKLQSDLSNVKEELNSMKHKNML 242 (360)
Q Consensus 214 eA~~YI~~Lqsel~slk~EL~~~K~k~~~ 242 (360)
.|-.-+..||++|+.|+.+|-..|.+...
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek~~~ 37 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKYKA 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46677889999999999999999877664
No 26
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.30 E-value=33 Score=26.37 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHK 239 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k 239 (360)
.+||..|+.++..|+++...+..+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~e 51 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLE 51 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999998888776665433
No 27
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=37.62 E-value=28 Score=22.26 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 018114 218 YIQKLQSDLSNVKEELNSMKHK 239 (360)
Q Consensus 218 YI~~Lqsel~slk~EL~~~K~k 239 (360)
|+-+|+.|+-+||-|.+++|.+
T Consensus 1 yvyqlkdevgelkgevralkde 22 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDE 22 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHH
Confidence 5667888888888777777643
No 28
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.82 E-value=35 Score=25.05 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
++||..|+.++..|+.+-..++.+...|
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988888877776655544
No 29
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.59 E-value=35 Score=24.87 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
+.||..|+.++..|+.+-.+++.+...|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888777777655543
No 30
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.36 E-value=46 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 018114 214 DALNYIQKLQSDLSNVKEELNS 235 (360)
Q Consensus 214 eA~~YI~~Lqsel~slk~EL~~ 235 (360)
|.++-|..|+.++++|++|-+.
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766553
No 31
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=34.72 E-value=1.4e+02 Score=24.95 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhCCh-h--------HHhhhcCCCCHHHHHHHHHH
Q 018114 213 HDALNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDP-Y--------MVKELSQPSSIEVEEIIHQL 283 (360)
Q Consensus 213 veA~~YI~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL~P-e--------~v~eLS~~aSpeV~eaM~~~ 283 (360)
..-+++|..||.....++.+|..- - . +--..+=+||||++= + ++..+.-=-..+..|-++.+
T Consensus 9 aqQQ~~In~lq~~~~klE~dlq~k--i-~------slisSiEw~l~Smel~de~K~DieQqLnsid~Inp~~aiddiE~~ 79 (110)
T 1lj2_A 9 PQQQAHIAELQVYNNKLERDLQNK--I-G------SLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESV 79 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--H-H------HHHHHHHHHHHTSCCCHHHHHHHHHHHTTSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H-H------HHHHHHHHHHhhccCChHHHHHHHHHhccccccCcchhHhHHHHH
Confidence 345778888888887777666541 1 1 224455667777652 1 12222222233555566667
Q ss_pred HHHHHhh
Q 018114 284 VQNILQR 290 (360)
Q Consensus 284 V~gLLg~ 290 (360)
|++|+--
T Consensus 80 IrnlI~D 86 (110)
T 1lj2_A 80 IRNLISD 86 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766643
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.51 E-value=47 Score=24.62 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018114 217 NYIQKLQSDLSNVKEELNSMKHKNML 242 (360)
Q Consensus 217 ~YI~~Lqsel~slk~EL~~~K~k~~~ 242 (360)
+++..|+.++..|+++-.+++.+...
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~ 48 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADS 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 33
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.43 E-value=39 Score=24.91 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
++||..|+.++..|+++-.+++.+...|
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988888877776554433
No 34
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=33.17 E-value=16 Score=27.05 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018114 215 ALNYIQKLQSDLSNVKEELNSM 236 (360)
Q Consensus 215 A~~YI~~Lqsel~slk~EL~~~ 236 (360)
...||..|+.+|..|+..|..+
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999998877765
No 35
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=33.07 E-value=15 Score=28.56 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 018114 213 HDALNYIQKLQSDLSN 228 (360)
Q Consensus 213 veA~~YI~~Lqsel~s 228 (360)
-.|.+||..|+.++.+
T Consensus 48 ~~AieYI~~Lq~~l~e 63 (76)
T 3u5v_A 48 QQAVQVILGLEQQVRE 63 (76)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4699999999998843
No 36
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=30.59 E-value=39 Score=25.75 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018114 216 LNYIQKLQSDLSNVKEELNSMK 237 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K 237 (360)
..||..|+.+|..|+..|.++.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 6799999999999999998753
No 37
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.43 E-value=38 Score=23.11 Aligned_cols=25 Identities=16% Similarity=0.464 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcc
Q 018114 222 LQSDLSNVKEELNSMKHKNMLMESD 246 (360)
Q Consensus 222 Lqsel~slk~EL~~~K~k~~~lq~q 246 (360)
++.+..+.+++.+++|++|+.|++|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHH
Confidence 4566677777778888777766554
No 38
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=30.29 E-value=39 Score=21.39 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHH
Q 018114 213 HDALNYIQKLQSDL 226 (360)
Q Consensus 213 veA~~YI~~Lqsel 226 (360)
+||.+|+++|-.++
T Consensus 7 iearkyleqlhrkl 20 (26)
T 1xkm_B 7 IEARKYLEQLHRKL 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78999999987666
No 39
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=28.54 E-value=15 Score=28.53 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHhhC
Q 018114 219 IQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFL 260 (360)
Q Consensus 219 I~~Lqsel~slk~EL~~~K~k~~~lq~q~~~~N~LL~YLrSL 260 (360)
+++|+.++..||.||...+-|.+ ..-.+|..|...-
T Consensus 19 ~~~lr~~veqLr~el~~~RikVS------~aa~~L~~Yce~~ 54 (73)
T 1got_G 19 KDKLKMEVDQLKKEVTLERMLVS------KCCEEFRDYVEER 54 (73)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCchhhHH------HHHHHHHHHHHhc
Confidence 56888888888888876554444 4567888888643
No 40
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=28.25 E-value=30 Score=26.51 Aligned_cols=27 Identities=41% Similarity=0.693 Sum_probs=22.2
Q ss_pred CCeeEEE-----EeccchHHHHHHHHHhhhhh
Q 018114 132 DQFSITV-----RLSKQPLHSLLVSSIITGIS 158 (360)
Q Consensus 132 ~~F~VtI-----tts~E~La~LL~S~mMTGY~ 158 (360)
+.|.|.| -|+|-||-.||.||++||.-
T Consensus 18 ~tftvkv~gkeywt~rwnlqpllqsaqltgmt 49 (69)
T 1c4q_A 18 DTFTVKVGDKELATNRANLQSLLLSAQITGMT 49 (69)
T ss_dssp SCEEEEETTEEEEECCTTHHHHHHHHHHHTCE
T ss_pred ceEEEEecCeeeeecccchhhHHhhceecceE
Confidence 4566554 58999999999999999964
No 41
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.23 E-value=54 Score=23.28 Aligned_cols=28 Identities=7% Similarity=0.328 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKHKNMLM 243 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~k~~~l 243 (360)
+.|+..|+.+..+|+.-..++..+.+-|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999988887777776555443
No 42
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.31 E-value=82 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018114 216 LNYIQKLQSDLSNVKEELNSMKH 238 (360)
Q Consensus 216 ~~YI~~Lqsel~slk~EL~~~K~ 238 (360)
++-|.-|++||..||=|+.++|+
T Consensus 8 kqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777777777777777765
No 43
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=26.71 E-value=36 Score=32.97 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 112 ESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 112 p~V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
|. +++|+++|...|| +|.++.+|+-||+ |.|+
T Consensus 316 ~~-~~~~~~~~~~~~~-~~~~~v~~ka~t~-e~lg 347 (371)
T 1w55_A 316 DF-KQAMQSNIAHTLD-LDEFRINVKATTT-EKLG 347 (371)
T ss_dssp GG-HHHHHHHHHHHHT-CCGGGEEEEEECC-TTCH
T ss_pred hH-HHHHHHHHHHHhC-CCcceEEEEEecC-CCCC
Confidence 44 5899999999997 7999999999988 8887
No 44
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase, mycobacteria, complex with CDP; HET: CDP IPE; 2.2A {Mycobacterium smegmatis}
Probab=25.59 E-value=49 Score=29.51 Aligned_cols=28 Identities=21% Similarity=0.479 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCeeEEEEeccchHH
Q 018114 114 AKDSMKQTISSMLGLLPSDQFSITVRLSKQPLH 146 (360)
Q Consensus 114 V~~amk~tI~gmLG~LPs~~F~VtItts~E~La 146 (360)
-+++|+++|..+||. | .+|+.||+ |.|+
T Consensus 113 ~~~~m~~~ia~~L~~-~---V~vKAtT~-E~LG 140 (165)
T 2uzh_A 113 RREEAQQVLSELVGA-P---VSVSATTT-DGLG 140 (165)
T ss_dssp GHHHHHHHHHHHHTS-C---EEEEEECC-TTCH
T ss_pred HHHHHHHHHHHHhCC-C---EEEEEecC-CCCC
Confidence 468999999999997 3 67776666 7775
No 45
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=24.29 E-value=1e+02 Score=22.65 Aligned_cols=28 Identities=11% Similarity=0.270 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018114 212 SHDALNYIQKLQSDLSNVKEELNSMKHK 239 (360)
Q Consensus 212 ~veA~~YI~~Lqsel~slk~EL~~~K~k 239 (360)
.++|+.=|..++.||...++.|...++.
T Consensus 10 Ei~Aqe~iLr~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 10 IIAAQEEMLRKERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999988754
No 46
>1r4p_B Sltii B subunit, shiga-like toxin type II B subunit; AB5 toxin; HET: 1PS; 1.77A {Escherichia coli} SCOP: b.40.2.1 PDB: 2ga4_B* 3mxg_A* 2bos_A* 1qoh_A*
Probab=22.31 E-value=45 Score=25.60 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=18.2
Q ss_pred EeccchHHHHHHHHHhhhhh
Q 018114 139 RLSKQPLHSLLVSSIITGIS 158 (360)
Q Consensus 139 tts~E~La~LL~S~mMTGY~ 158 (360)
-|+|=||-.||.||++||.-
T Consensus 29 wt~rwnlqpllqsaqltgmt 48 (70)
T 1r4p_B 29 WTSRWNLQPLLQSAQLTGMT 48 (70)
T ss_dssp EECCTTHHHHHHHHHHHTCE
T ss_pred eecccchhhHhhhceecceE
Confidence 58899999999999999964
No 47
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=21.06 E-value=18 Score=28.62 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=9.4
Q ss_pred CChhHHhhhcCCC
Q 018114 260 LDPYMVKELSQPS 272 (360)
Q Consensus 260 L~Pe~v~eLS~~a 272 (360)
.+||+++++....
T Consensus 45 aspEql~q~q~~l 57 (78)
T 1dip_A 45 ASPEQLEKFQSRL 57 (78)
T ss_dssp TSSSCSCCCSSSS
T ss_pred CCHHHHHHHHhcc
Confidence 4678888887766
No 48
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.01 E-value=1e+02 Score=21.96 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 018114 220 QKLQSDLSNVKEELNSMKHKNM 241 (360)
Q Consensus 220 ~~Lqsel~slk~EL~~~K~k~~ 241 (360)
.-|++|+..+++.|.++|.|-.
T Consensus 23 aaleselqalekklaalksklq 44 (48)
T 1g6u_A 23 AALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888886543
Done!