Query 018115
Match_columns 360
No_of_seqs 262 out of 1421
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 10:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018115.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018115hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1egwa_ d.88.1.1 (A:) Myocyte 100.0 5E-35 3.6E-39 222.0 -0.6 71 2-74 1-71 (71)
2 d1srsa_ d.88.1.1 (A:) Serum re 100.0 3.6E-33 2.6E-37 217.3 -2.3 71 1-73 2-72 (84)
3 d1mnma_ d.88.1.1 (A:) MCM1 tra 100.0 4.9E-33 3.6E-37 217.7 -2.4 74 2-77 3-76 (85)
4 d1kafa_ d.199.1.1 (A:) DNA-bin 70.3 0.5 3.6E-05 35.7 0.4 53 5-74 22-75 (108)
5 d1lrza1 a.2.7.4 (A:245-309) Me 62.2 9.6 0.0007 26.1 6.0 52 116-169 7-58 (65)
6 d2oa5a1 d.362.1.1 (A:7-102) Un 57.7 19 0.0014 26.4 7.4 56 113-168 3-61 (96)
7 d1bjta_ e.11.1.1 (A:) DNA topo 32.1 40 0.0029 33.3 7.3 27 44-74 556-582 (760)
8 d1t27a_ d.129.3.4 (A:) Phoshat 22.1 35 0.0025 29.5 4.0 43 124-166 217-259 (269)
9 d1zpsa1 b.168.1.1 (A:8-131) Ph 17.9 10 0.00074 29.3 -0.5 38 16-53 47-93 (124)
10 d1gqea_ e.38.1.1 (A:) Polypept 13.8 3.5E+02 0.026 23.5 9.2 17 113-129 49-65 (362)
No 1
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.98 E-value=5e-35 Score=222.05 Aligned_cols=71 Identities=37% Similarity=0.762 Sum_probs=68.7
Q ss_pred CCcccceEEecCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHhhc
Q 018115 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (360)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (360)
||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+||+++|++ +++++||+||..+
T Consensus 1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s--~~~~~vl~ry~~~ 71 (71)
T d1egwa_ 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEY 71 (71)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC
T ss_pred CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC--CCHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999987 7899999999753
No 2
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=3.6e-33 Score=217.29 Aligned_cols=71 Identities=37% Similarity=0.543 Sum_probs=68.9
Q ss_pred CCCcccceEEecCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHhh
Q 018115 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQ 73 (360)
Q Consensus 1 MGR~Ki~IkrIen~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~~ 73 (360)
+||+||+|++|||+..|+|||+|||.||||||+||||||||+||||||||+||+|.|++ ++++.||+||..
T Consensus 2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s--~~~~~vi~~~~~ 72 (84)
T d1srsa_ 2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSETG 72 (84)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEEC--GGGHHHHSSHHH
T ss_pred CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeC--CCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999986 899999999974
No 3
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.97 E-value=4.9e-33 Score=217.69 Aligned_cols=74 Identities=36% Similarity=0.531 Sum_probs=70.3
Q ss_pred CCcccceEEecCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHhhcCHH
Q 018115 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQ 77 (360)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~ 77 (360)
||+||+|++|||..+|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+||...+..
T Consensus 3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~s--p~v~~vl~r~~~~~~~ 76 (85)
T d1mnma_ 3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEGRNLI 76 (85)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHHHHHH
T ss_pred CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccC--CCHHHHHHHHhcccHH
Confidence 8999999999999999999999999999999999999999999999999999999986 8999999999865443
No 4
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=70.32 E-value=0.5 Score=35.68 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=38.3
Q ss_pred ccceEEe-cCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHhhc
Q 018115 5 KLKIKRL-ESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (360)
Q Consensus 5 Ki~IkrI-en~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (360)
+|+||.| +|.++-.|+|+||-+|+-| .||- .+|.+-.|+. .-+++.+..|..+
T Consensus 22 ~i~lk~v~inRsNyev~f~krT~GiR~----------fEi~-----n~G~~RIfgY--km~e~~~q~Ft~l 75 (108)
T d1kafa_ 22 GFVLKKVEIYRSNYLAILEKRTNGIRN----------FEIN-----NNGNMRIFGY--KMMEHHIQKFTDI 75 (108)
T ss_dssp TCCEEEEEEETTEEEEEEEEEETTEEE----------EEEC-----TTSEEEEEEE--SCCHHHHHHHHTT
T ss_pred ceeEeeeeeccccceeehhhhcCceeE----------EEEe-----cCCcEEEEee--eccHHHHHHHhhc
Confidence 6899999 6888999999999999854 2222 4677666665 4556666666654
No 5
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=62.20 E-value=9.6 Score=26.14 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018115 116 ELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKE 169 (360)
Q Consensus 116 ~L~~ei~~Lq~qle~lq~rlr~~~g~d~~LSleEL~~LE~qLe~sL~~IR~RK~ 169 (360)
.|+.+...|..+|..+...+. ..|+.--.-..+.+|++||+.--.+|.+.+.
T Consensus 7 ~L~~~~~~L~~~i~k~~~~le--knP~skK~~nk~~el~~Q~~s~~~ki~Ea~~ 58 (65)
T d1lrza1 7 ELNEERDILNKDLNKALKDIE--KRPENKKAHNKRDNLQQQLDANEQKIEEGKR 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555444443 1233222356889999999999999888764
No 6
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=57.65 E-value=19 Score=26.43 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018115 113 TVEELTHQVRILQAQLTEVHQRLSYWS---NPGNIESIEHLRQMENSLRESINQICLHK 168 (360)
Q Consensus 113 ~vE~L~~ei~~Lq~qle~lq~rlr~~~---g~d~~LSleEL~~LE~qLe~sL~~IR~RK 168 (360)
++|+|..++.+|+-++..|.++++... ..+..|+-.+=+-+--+.-.+|...-++|
T Consensus 3 t~EeLaaeL~rL~~ENk~LKkkl~~~~~~~~~d~~LT~~qke~~I~s~~~~lts~A~kK 61 (96)
T d2oa5a1 3 TYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 61 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999888642 33478998877777666666665555555
No 7
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.10 E-value=40 Score=33.29 Aligned_cols=27 Identities=19% Similarity=0.603 Sum_probs=22.5
Q ss_pred eccccCCCCCCccccCCCcchHHHHHHHhhc
Q 018115 44 VLLMFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (360)
Q Consensus 44 aLIIFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (360)
-+++|.+.|++..| .++++||..|...
T Consensus 556 Nm~l~d~~g~i~k~----~sl~eIL~~f~~~ 582 (760)
T d1bjta_ 556 NMVAFDPHGKIKKY----NSVNEILSEFYYV 582 (760)
T ss_dssp TEEEECTTSCEEEE----SSHHHHHHHHHHH
T ss_pred ceeEEcCCCcccch----hhHHHHHHHHHHH
Confidence 47889999998888 3699999999764
No 8
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.12 E-value=35 Score=29.55 Aligned_cols=43 Identities=16% Similarity=0.351 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018115 124 LQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICL 166 (360)
Q Consensus 124 Lq~qle~lq~rlr~~~g~d~~LSleEL~~LE~qLe~sL~~IR~ 166 (360)
++.-+-..+++...|.++=-.||+++++.+|.+....|+++|.
T Consensus 217 ~r~~~l~~HRq~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 217 EKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp HHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4444556677777777665679999999999999999988775
No 9
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=17.87 E-value=10 Score=29.33 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=32.0
Q ss_pred Ccceeecccccchhhhhh---------hhhcccCcceeccccCCCCC
Q 018115 16 NRQVTYSKRRNGILKKAR---------ELSILCDIDIVLLMFSPTGR 53 (360)
Q Consensus 16 ~RqvTFsKRr~GL~KKA~---------ELSvLCDaeVaLIIFSp~GK 53 (360)
.+-+-||+-|+.|.+|.. |+.+=||.|.-|++.-+.|-
T Consensus 47 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~q~G~ 93 (124)
T d1zpsa1 47 GTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 93 (124)
T ss_dssp SBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CcEEEEEhhhhhhhhhhhhcCCeeEEEEEEcCCCCCEEEEEEecccc
Confidence 445567999998998865 89999999999999999884
No 10
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=13.83 E-value=3.5e+02 Score=23.47 Aligned_cols=17 Identities=18% Similarity=0.222 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018115 113 TVEELTHQVRILQAQLT 129 (360)
Q Consensus 113 ~vE~L~~ei~~Lq~qle 129 (360)
...++..++..|+..+.
T Consensus 49 kAqkl~KE~s~L~~iVe 65 (362)
T d1gqea_ 49 RAQALGKERSSLEAVVD 65 (362)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554444
Done!