Query 018116
Match_columns 360
No_of_seqs 185 out of 2176
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 1.1E-41 2.3E-46 303.8 24.1 332 17-360 5-342 (342)
2 PF00891 Methyltransf_2: O-met 100.0 8.4E-39 1.8E-43 284.5 19.5 235 97-337 3-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 8E-38 1.7E-42 287.7 24.6 289 31-347 3-305 (306)
4 TIGR00740 methyltransferase, p 99.8 1.8E-18 4E-23 153.6 10.1 158 194-359 52-238 (239)
5 COG2226 UbiE Methylase involve 99.8 4E-17 8.7E-22 141.8 16.7 159 194-358 50-235 (238)
6 PTZ00098 phosphoethanolamine N 99.7 4.5E-17 9.7E-22 146.3 16.7 156 183-351 42-205 (263)
7 PRK15451 tRNA cmo(5)U34 methyl 99.7 8.8E-18 1.9E-22 149.7 11.2 151 194-348 55-230 (247)
8 PLN02233 ubiquinone biosynthes 99.7 1.9E-16 4E-21 142.1 19.5 160 193-359 71-260 (261)
9 PF01209 Ubie_methyltran: ubiE 99.7 1.1E-17 2.3E-22 146.9 9.1 160 193-359 45-232 (233)
10 TIGR02752 MenG_heptapren 2-hep 99.7 1.8E-16 4E-21 140.1 16.6 166 185-360 37-231 (231)
11 PLN02244 tocopherol O-methyltr 99.7 7.7E-16 1.7E-20 143.3 17.5 151 194-350 117-280 (340)
12 PRK14103 trans-aconitate 2-met 99.7 7E-16 1.5E-20 138.3 16.6 155 183-346 19-182 (255)
13 PF12847 Methyltransf_18: Meth 99.6 9.3E-16 2E-20 119.6 10.1 98 195-295 1-111 (112)
14 PRK00216 ubiE ubiquinone/menaq 99.6 1.7E-14 3.8E-19 127.9 19.3 166 185-360 43-238 (239)
15 PLN02490 MPBQ/MSBQ methyltrans 99.6 3.6E-15 7.7E-20 137.1 14.7 141 194-351 112-259 (340)
16 PLN02336 phosphoethanolamine N 99.6 4.5E-15 9.7E-20 145.0 16.4 150 184-349 257-415 (475)
17 PRK15068 tRNA mo(5)U34 methylt 99.6 4.8E-15 1E-19 136.6 15.0 152 185-349 114-275 (322)
18 PF02353 CMAS: Mycolic acid cy 99.6 2E-15 4.3E-20 135.5 11.9 158 183-349 52-218 (273)
19 smart00828 PKS_MT Methyltransf 99.6 4.9E-15 1.1E-19 130.3 13.8 135 197-349 1-145 (224)
20 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 1.6E-14 3.6E-19 126.7 16.7 160 193-360 37-223 (223)
21 PRK11207 tellurite resistance 99.6 9.1E-15 2E-19 125.8 14.6 140 183-346 20-168 (197)
22 TIGR00452 methyltransferase, p 99.6 8.7E-15 1.9E-19 133.5 15.0 152 185-349 113-274 (314)
23 PLN02396 hexaprenyldihydroxybe 99.6 3.1E-15 6.8E-20 137.0 12.0 144 195-349 131-290 (322)
24 COG2230 Cfa Cyclopropane fatty 99.6 6.9E-15 1.5E-19 130.1 13.0 155 183-349 62-224 (283)
25 PRK11873 arsM arsenite S-adeno 99.6 1.6E-14 3.6E-19 130.8 15.8 145 193-348 75-230 (272)
26 PF13489 Methyltransf_23: Meth 99.6 4.7E-15 1E-19 123.2 10.9 135 193-345 20-160 (161)
27 PF13847 Methyltransf_31: Meth 99.6 6.8E-15 1.5E-19 121.4 9.8 137 194-340 2-152 (152)
28 TIGR02021 BchM-ChlM magnesium 99.6 3.5E-14 7.6E-19 124.4 14.9 183 156-351 16-209 (219)
29 PRK11036 putative S-adenosyl-L 99.6 1.1E-14 2.4E-19 130.5 11.7 153 194-353 43-212 (255)
30 PRK01683 trans-aconitate 2-met 99.6 7E-14 1.5E-18 125.7 16.5 148 183-343 21-182 (258)
31 PRK08317 hypothetical protein; 99.6 8.5E-14 1.8E-18 123.4 15.9 156 185-349 11-177 (241)
32 PRK06922 hypothetical protein; 99.6 3.3E-14 7.1E-19 138.4 14.0 143 154-301 377-543 (677)
33 KOG1540 Ubiquinone biosynthesi 99.6 1.5E-13 3.3E-18 117.4 16.1 146 194-345 99-278 (296)
34 TIGR00477 tehB tellurite resis 99.5 1.2E-13 2.6E-18 118.6 14.3 140 184-347 21-168 (195)
35 PF06080 DUF938: Protein of un 99.5 1.4E-13 3E-18 116.1 13.1 157 198-360 28-204 (204)
36 PRK06202 hypothetical protein; 99.5 2.2E-13 4.9E-18 120.4 15.0 147 194-350 59-224 (232)
37 COG4106 Tam Trans-aconitate me 99.5 9.7E-14 2.1E-18 115.7 11.3 168 183-360 20-203 (257)
38 PF08241 Methyltransf_11: Meth 99.5 3.6E-14 7.9E-19 106.8 8.0 88 200-293 1-95 (95)
39 smart00138 MeTrc Methyltransfe 99.5 5E-13 1.1E-17 120.0 15.7 99 194-295 98-242 (264)
40 PF08242 Methyltransf_12: Meth 99.5 8.3E-15 1.8E-19 111.7 3.2 87 200-291 1-99 (99)
41 PRK10258 biotin biosynthesis p 99.5 1E-12 2.2E-17 117.6 16.5 146 183-343 32-182 (251)
42 COG2227 UbiG 2-polyprenyl-3-me 99.5 5.3E-14 1.2E-18 120.2 7.6 145 194-349 58-216 (243)
43 PRK07580 Mg-protoporphyrin IX 99.5 7.2E-13 1.6E-17 117.0 14.9 146 194-351 62-217 (230)
44 PRK05785 hypothetical protein; 99.5 1.3E-12 2.8E-17 114.7 16.0 153 195-360 51-224 (226)
45 TIGR03587 Pse_Me-ase pseudamin 99.5 3.9E-13 8.6E-18 115.9 12.1 103 193-300 41-147 (204)
46 TIGR02072 BioC biotin biosynth 99.5 8.1E-13 1.7E-17 117.2 14.4 136 195-347 34-175 (240)
47 PRK11705 cyclopropane fatty ac 99.5 8.2E-13 1.8E-17 124.5 15.0 152 184-349 158-313 (383)
48 PLN02336 phosphoethanolamine N 99.5 6.9E-13 1.5E-17 129.6 14.2 143 183-345 27-179 (475)
49 KOG4300 Predicted methyltransf 99.5 5.5E-13 1.2E-17 110.4 11.3 176 168-354 51-238 (252)
50 PRK12335 tellurite resistance 99.5 1E-12 2.3E-17 119.7 14.3 132 194-347 119-258 (287)
51 KOG1270 Methyltransferases [Co 99.5 9.5E-14 2.1E-18 119.4 6.6 143 196-349 90-250 (282)
52 TIGR00537 hemK_rel_arch HemK-r 99.5 3E-12 6.5E-17 108.5 15.4 134 194-360 18-177 (179)
53 PF13649 Methyltransf_25: Meth 99.5 1.9E-13 4.2E-18 104.5 7.2 88 199-289 1-101 (101)
54 PRK04266 fibrillarin; Provisio 99.4 6E-12 1.3E-16 110.0 16.8 140 193-359 70-224 (226)
55 PRK08287 cobalt-precorrin-6Y C 99.4 3.2E-12 7E-17 109.1 14.3 121 193-349 29-157 (187)
56 PLN02585 magnesium protoporphy 99.4 1.8E-12 4E-17 118.5 13.4 154 195-360 144-314 (315)
57 TIGR03840 TMPT_Se_Te thiopurin 99.4 6.3E-12 1.4E-16 109.0 15.3 131 194-347 33-186 (213)
58 TIGR03438 probable methyltrans 99.4 6.4E-12 1.4E-16 115.2 13.9 97 194-293 62-175 (301)
59 PLN03075 nicotianamine synthas 99.4 3.2E-12 7E-17 114.6 10.8 96 194-293 122-231 (296)
60 TIGR00138 gidB 16S rRNA methyl 99.4 7.8E-12 1.7E-16 105.8 12.3 121 195-353 42-174 (181)
61 PF03848 TehB: Tellurite resis 99.4 4.9E-12 1.1E-16 106.6 10.7 140 183-346 20-167 (192)
62 PF08003 Methyltransf_9: Prote 99.4 8.8E-12 1.9E-16 110.5 12.7 154 183-349 105-268 (315)
63 PRK00107 gidB 16S rRNA methylt 99.4 2.7E-11 5.8E-16 102.8 14.8 118 194-349 44-170 (187)
64 PF05401 NodS: Nodulation prot 99.4 2.1E-12 4.5E-17 107.6 7.8 132 193-349 41-180 (201)
65 PRK15001 SAM-dependent 23S rib 99.3 2E-11 4.3E-16 114.1 14.6 108 183-295 218-340 (378)
66 PRK13255 thiopurine S-methyltr 99.3 3.4E-11 7.3E-16 104.8 14.9 132 194-348 36-190 (218)
67 PF05891 Methyltransf_PK: AdoM 99.3 3.9E-12 8.5E-17 107.8 8.6 139 194-349 54-202 (218)
68 PRK05134 bifunctional 3-demeth 99.3 2.2E-11 4.7E-16 107.8 13.8 149 194-349 47-206 (233)
69 KOG2361 Predicted methyltransf 99.3 8.9E-12 1.9E-16 106.0 8.8 144 198-346 74-235 (264)
70 TIGR02081 metW methionine bios 99.3 3.3E-11 7.1E-16 103.5 12.4 142 194-350 12-169 (194)
71 TIGR02469 CbiT precorrin-6Y C5 99.3 3.1E-11 6.7E-16 95.6 10.6 94 193-294 17-121 (124)
72 PF07021 MetW: Methionine bios 99.3 8.7E-11 1.9E-15 97.8 12.0 140 193-351 11-170 (193)
73 TIGR01983 UbiG ubiquinone bios 99.3 7.2E-11 1.6E-15 103.8 12.1 142 195-349 45-204 (224)
74 PF05175 MTS: Methyltransferas 99.2 5.4E-11 1.2E-15 99.9 10.1 98 195-295 31-140 (170)
75 PTZ00146 fibrillarin; Provisio 99.2 5.5E-10 1.2E-14 99.9 16.7 133 193-351 130-274 (293)
76 PRK09489 rsmC 16S ribosomal RN 99.2 8.3E-11 1.8E-15 109.2 12.0 107 185-296 188-304 (342)
77 TIGR03534 RF_mod_PrmC protein- 99.2 1.8E-10 3.9E-15 103.0 13.6 123 195-349 87-242 (251)
78 PRK09328 N5-glutamine S-adenos 99.2 3.2E-10 6.9E-15 102.9 14.9 135 193-359 106-274 (275)
79 PRK00121 trmB tRNA (guanine-N( 99.2 7.6E-11 1.6E-15 101.8 8.7 98 195-295 40-156 (202)
80 PF12147 Methyltransf_20: Puta 99.2 1.2E-09 2.6E-14 96.1 15.7 158 194-360 134-311 (311)
81 PF05724 TPMT: Thiopurine S-me 99.2 4E-10 8.8E-15 97.9 12.4 131 193-348 35-190 (218)
82 PRK00517 prmA ribosomal protei 99.2 1E-09 2.2E-14 98.0 15.3 123 194-358 118-248 (250)
83 COG4123 Predicted O-methyltran 99.1 6.8E-10 1.5E-14 96.8 12.8 132 185-349 35-195 (248)
84 PRK13256 thiopurine S-methyltr 99.1 9.1E-10 2E-14 95.6 13.5 100 194-298 42-166 (226)
85 PRK14968 putative methyltransf 99.1 2.5E-09 5.3E-14 91.2 15.8 123 194-349 22-174 (188)
86 PRK13944 protein-L-isoaspartat 99.1 3.6E-10 7.8E-15 97.8 10.7 91 193-294 70-172 (205)
87 COG2813 RsmC 16S RNA G1207 met 99.1 2.4E-09 5.2E-14 95.4 15.5 109 183-296 148-267 (300)
88 TIGR00536 hemK_fam HemK family 99.1 1.9E-09 4.1E-14 98.2 15.2 94 197-293 116-242 (284)
89 TIGR03533 L3_gln_methyl protei 99.1 1E-09 2.2E-14 99.7 13.4 96 195-293 121-249 (284)
90 PHA03411 putative methyltransf 99.1 1.7E-09 3.7E-14 95.7 13.5 123 195-342 64-208 (279)
91 PRK00377 cbiT cobalt-precorrin 99.1 1.7E-09 3.6E-14 93.2 13.1 93 193-293 38-143 (198)
92 PRK14966 unknown domain/N5-glu 99.1 2.7E-09 5.8E-14 100.0 15.4 133 195-359 251-417 (423)
93 PRK11188 rrmJ 23S rRNA methylt 99.1 2.5E-09 5.4E-14 92.7 13.4 103 185-295 42-165 (209)
94 COG2242 CobL Precorrin-6B meth 99.1 1.4E-09 3E-14 90.1 11.0 99 186-295 27-135 (187)
95 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.8E-10 1.3E-14 95.7 9.0 97 195-295 16-132 (194)
96 PRK13942 protein-L-isoaspartat 99.1 1.3E-09 2.8E-14 94.9 10.8 98 184-294 67-175 (212)
97 PRK11088 rrmA 23S rRNA methylt 99.1 6.7E-10 1.5E-14 100.5 9.2 90 195-296 85-182 (272)
98 PRK11805 N5-glutamine S-adenos 99.1 2.6E-09 5.7E-14 97.9 13.1 94 197-293 135-261 (307)
99 PLN02232 ubiquinone biosynthes 99.0 8.7E-10 1.9E-14 91.5 8.7 124 223-352 1-151 (160)
100 KOG1271 Methyltransferases [Ge 99.0 1E-09 2.2E-14 89.4 8.7 125 195-351 67-208 (227)
101 TIGR00080 pimt protein-L-isoas 99.0 1.7E-09 3.8E-14 94.3 10.9 98 184-294 68-176 (215)
102 PRK01544 bifunctional N5-gluta 99.0 6.4E-09 1.4E-13 101.7 14.0 132 195-358 138-304 (506)
103 PRK07402 precorrin-6B methylas 99.0 4.8E-09 1E-13 90.2 11.2 100 186-296 33-143 (196)
104 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.6E-09 7.9E-14 98.5 10.7 106 185-296 114-236 (390)
105 PRK14967 putative methyltransf 99.0 1.6E-08 3.4E-13 88.8 14.2 102 193-298 34-162 (223)
106 TIGR00406 prmA ribosomal prote 99.0 7.4E-09 1.6E-13 94.4 12.4 94 194-296 158-260 (288)
107 cd02440 AdoMet_MTases S-adenos 99.0 3.7E-09 8E-14 80.0 8.9 92 198-294 1-103 (107)
108 PRK04457 spermidine synthase; 99.0 2.2E-09 4.7E-14 96.3 8.5 98 194-295 65-177 (262)
109 PF13659 Methyltransf_26: Meth 98.9 2.7E-09 5.8E-14 83.6 7.1 95 197-295 2-115 (117)
110 KOG2899 Predicted methyltransf 98.9 2E-08 4.3E-13 85.7 12.6 148 183-341 46-248 (288)
111 PF01739 CheR: CheR methyltran 98.9 3.6E-09 7.7E-14 90.2 8.2 97 195-294 31-174 (196)
112 TIGR03704 PrmC_rel_meth putati 98.9 2.2E-08 4.8E-13 89.3 13.4 122 196-349 87-241 (251)
113 PRK10611 chemotaxis methyltran 98.9 2.6E-08 5.7E-13 89.7 13.9 97 196-295 116-262 (287)
114 TIGR00438 rrmJ cell division p 98.9 2.1E-08 4.7E-13 85.6 12.3 95 193-294 30-145 (188)
115 PF04672 Methyltransf_19: S-ad 98.9 9.5E-09 2E-13 90.5 8.5 140 195-344 68-232 (267)
116 COG2890 HemK Methylase of poly 98.9 1.2E-07 2.6E-12 85.7 15.7 129 198-358 113-274 (280)
117 COG4976 Predicted methyltransf 98.8 5.6E-09 1.2E-13 88.3 6.5 145 183-349 115-266 (287)
118 PF08100 Dimerisation: Dimeris 98.8 1.7E-09 3.7E-14 70.3 2.6 49 33-81 1-51 (51)
119 PRK00312 pcm protein-L-isoaspa 98.8 2.4E-08 5.2E-13 87.0 10.7 90 193-295 76-175 (212)
120 PF06325 PrmA: Ribosomal prote 98.8 7.1E-08 1.5E-12 87.3 12.9 124 193-356 159-291 (295)
121 PF05148 Methyltransf_8: Hypot 98.8 1.6E-07 3.5E-12 79.1 13.7 159 157-359 31-196 (219)
122 COG1352 CheR Methylase of chem 98.8 1.1E-07 2.3E-12 84.7 13.4 97 195-294 96-240 (268)
123 TIGR01177 conserved hypothetic 98.8 5E-08 1.1E-12 90.7 11.9 98 193-295 180-294 (329)
124 COG2264 PrmA Ribosomal protein 98.8 9.1E-08 2E-12 85.8 13.0 122 193-351 160-291 (300)
125 PRK00811 spermidine synthase; 98.8 2.4E-08 5.2E-13 90.7 9.3 98 194-294 75-190 (283)
126 PF05219 DREV: DREV methyltran 98.8 7.5E-08 1.6E-12 83.9 10.7 145 195-350 94-242 (265)
127 KOG3010 Methyltransferase [Gen 98.8 2.7E-08 5.8E-13 85.0 7.8 95 195-296 33-138 (261)
128 PRK13943 protein-L-isoaspartat 98.7 8.3E-08 1.8E-12 88.2 9.6 92 193-295 78-180 (322)
129 smart00650 rADc Ribosomal RNA 98.7 7.5E-08 1.6E-12 80.7 8.6 88 184-276 4-99 (169)
130 PLN02366 spermidine synthase 98.7 1.4E-07 3.1E-12 86.2 11.0 97 194-293 90-204 (308)
131 COG2519 GCD14 tRNA(1-methylade 98.7 2.4E-07 5.3E-12 80.3 11.5 105 183-299 84-199 (256)
132 COG2518 Pcm Protein-L-isoaspar 98.7 2.2E-07 4.7E-12 78.8 10.4 98 184-296 63-170 (209)
133 PLN02781 Probable caffeoyl-CoA 98.7 4.5E-07 9.8E-12 80.0 12.9 96 193-296 66-179 (234)
134 PRK01581 speE spermidine synth 98.7 1.1E-07 2.5E-12 87.4 9.3 98 194-294 149-267 (374)
135 TIGR00417 speE spermidine synt 98.7 1.1E-07 2.3E-12 86.0 9.0 98 194-294 71-185 (270)
136 PLN02672 methionine S-methyltr 98.6 3.4E-07 7.4E-12 95.5 13.5 65 196-260 119-210 (1082)
137 PF01135 PCMT: Protein-L-isoas 98.6 8E-08 1.7E-12 82.9 7.5 100 183-295 62-172 (209)
138 KOG3045 Predicted RNA methylas 98.6 1.2E-06 2.7E-11 75.5 14.3 159 156-360 138-303 (325)
139 PRK03612 spermidine synthase; 98.6 4.3E-07 9.4E-12 89.4 12.5 97 194-294 296-414 (521)
140 PHA03412 putative methyltransf 98.6 4.2E-07 9.1E-12 78.8 10.5 94 196-293 50-160 (241)
141 PF03291 Pox_MCEL: mRNA cappin 98.6 2.6E-07 5.6E-12 85.3 9.1 99 195-297 62-188 (331)
142 PRK04148 hypothetical protein; 98.6 7.9E-07 1.7E-11 70.4 10.5 98 185-297 8-111 (134)
143 PF02390 Methyltransf_4: Putat 98.6 2.5E-07 5.5E-12 79.1 8.1 92 196-295 18-133 (195)
144 PRK10901 16S rRNA methyltransf 98.5 5.8E-07 1.3E-11 86.5 11.2 104 193-299 242-376 (427)
145 PF10294 Methyltransf_16: Puta 98.5 3E-07 6.5E-12 77.3 7.7 101 193-298 43-159 (173)
146 TIGR00563 rsmB ribosomal RNA s 98.5 8.8E-07 1.9E-11 85.3 11.3 106 193-301 236-374 (426)
147 KOG1541 Predicted protein carb 98.5 1.4E-07 3.1E-12 79.5 4.9 93 195-293 50-158 (270)
148 PF08704 GCD14: tRNA methyltra 98.5 1E-06 2.2E-11 77.7 10.6 126 184-349 31-172 (247)
149 PRK14904 16S rRNA methyltransf 98.5 1.1E-06 2.3E-11 85.2 11.6 105 193-300 248-382 (445)
150 PRK14902 16S rRNA methyltransf 98.5 1.3E-06 2.8E-11 84.7 11.5 103 193-298 248-382 (444)
151 PRK11727 23S rRNA mA1618 methy 98.5 2.3E-06 5.1E-11 78.4 12.3 144 195-349 114-293 (321)
152 KOG1975 mRNA cap methyltransfe 98.4 9.4E-07 2E-11 78.7 7.9 104 184-294 109-236 (389)
153 PRK14901 16S rRNA methyltransf 98.4 2.2E-06 4.8E-11 82.7 10.6 103 193-298 250-387 (434)
154 PRK14896 ksgA 16S ribosomal RN 98.4 1.7E-06 3.8E-11 77.6 9.0 81 184-269 20-106 (258)
155 TIGR00446 nop2p NOL1/NOP2/sun 98.4 3.1E-06 6.8E-11 76.1 10.5 104 193-299 69-203 (264)
156 PF08123 DOT1: Histone methyla 98.4 1.2E-06 2.5E-11 75.3 7.3 109 184-300 33-163 (205)
157 PF01596 Methyltransf_3: O-met 98.4 5.2E-07 1.1E-11 77.6 5.1 97 193-298 43-157 (205)
158 COG3963 Phospholipid N-methylt 98.3 4.8E-06 1E-10 67.3 9.9 111 182-297 37-158 (194)
159 TIGR00755 ksgA dimethyladenosi 98.3 2.1E-06 4.4E-11 76.9 8.6 83 183-269 19-109 (253)
160 PRK14903 16S rRNA methyltransf 98.3 3.1E-06 6.8E-11 81.4 10.3 105 193-300 235-371 (431)
161 PRK00274 ksgA 16S ribosomal RN 98.3 1.6E-06 3.5E-11 78.4 7.9 81 184-269 33-120 (272)
162 COG4122 Predicted O-methyltran 98.3 2.7E-06 5.9E-11 73.3 8.4 100 193-301 57-171 (219)
163 PLN02476 O-methyltransferase 98.3 3.3E-06 7.2E-11 75.6 9.2 97 193-298 116-230 (278)
164 PF11968 DUF3321: Putative met 98.3 9.2E-06 2E-10 69.1 11.2 121 196-351 52-184 (219)
165 PRK13168 rumA 23S rRNA m(5)U19 98.3 5.1E-06 1.1E-10 80.5 11.1 98 183-293 287-398 (443)
166 COG0220 Predicted S-adenosylme 98.3 4.4E-06 9.6E-11 72.8 8.8 95 197-295 50-164 (227)
167 PF05185 PRMT5: PRMT5 arginine 98.3 3.4E-06 7.3E-11 81.1 8.7 127 155-291 151-293 (448)
168 KOG1661 Protein-L-isoaspartate 98.2 3.8E-06 8.1E-11 70.5 7.5 99 184-293 71-191 (237)
169 PTZ00338 dimethyladenosine tra 98.2 5.4E-06 1.2E-10 75.5 8.1 87 184-275 27-122 (294)
170 PLN02823 spermine synthase 98.2 6.9E-06 1.5E-10 76.0 8.5 96 194-293 102-218 (336)
171 PRK10909 rsmD 16S rRNA m(2)G96 98.2 8.8E-06 1.9E-10 69.7 8.3 95 195-297 53-160 (199)
172 KOG1331 Predicted methyltransf 98.2 5E-06 1.1E-10 73.2 6.8 99 194-299 44-147 (293)
173 PF04816 DUF633: Family of unk 98.1 1.8E-05 3.8E-10 68.1 9.6 124 199-359 1-138 (205)
174 KOG3191 Predicted N6-DNA-methy 98.1 0.00014 3E-09 59.9 14.1 67 196-262 44-119 (209)
175 TIGR03439 methyl_EasF probable 98.1 1.6E-05 3.5E-10 72.9 9.5 96 195-293 76-195 (319)
176 KOG2940 Predicted methyltransf 98.1 1.3E-05 2.9E-10 68.1 8.0 143 192-346 69-225 (325)
177 PLN02589 caffeoyl-CoA O-methyl 98.1 1.3E-05 2.9E-10 70.8 7.9 97 193-298 77-192 (247)
178 PRK11783 rlmL 23S rRNA m(2)G24 98.0 1E-05 2.3E-10 82.6 7.7 97 194-294 537-655 (702)
179 TIGR00478 tly hemolysin TlyA f 98.0 3.4E-05 7.3E-10 67.5 9.8 127 194-349 74-218 (228)
180 COG0421 SpeE Spermidine syntha 98.0 1.5E-05 3.3E-10 71.7 7.9 96 195-294 76-189 (282)
181 KOG1500 Protein arginine N-met 98.0 2.6E-05 5.7E-10 69.9 9.1 94 195-292 177-279 (517)
182 PRK15128 23S rRNA m(5)C1962 me 98.0 2.4E-05 5.1E-10 74.3 9.3 98 194-295 219-339 (396)
183 COG2263 Predicted RNA methylas 98.0 2.1E-05 4.7E-10 65.2 7.6 69 193-262 43-117 (198)
184 KOG2904 Predicted methyltransf 98.0 6.3E-05 1.4E-09 65.8 10.4 66 195-260 148-229 (328)
185 TIGR00479 rumA 23S rRNA (uraci 98.0 2.3E-05 5.1E-10 75.7 8.4 90 193-293 290-394 (431)
186 PF09243 Rsm22: Mitochondrial 98.0 2.8E-05 6E-10 70.3 8.3 103 194-301 32-145 (274)
187 PRK03522 rumB 23S rRNA methylu 98.0 2.3E-05 5.1E-10 72.4 8.0 64 195-260 173-247 (315)
188 KOG1499 Protein arginine N-met 98.0 3.5E-05 7.6E-10 70.0 8.6 95 194-292 59-164 (346)
189 PF01564 Spermine_synth: Sperm 97.9 1.8E-05 3.9E-10 70.3 5.9 99 194-295 75-191 (246)
190 PF02527 GidB: rRNA small subu 97.9 2.5E-05 5.4E-10 66.0 6.0 89 198-295 51-148 (184)
191 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.9 1.9E-05 4E-10 69.9 5.4 137 194-348 55-239 (256)
192 KOG0820 Ribosomal RNA adenine 97.9 3.4E-05 7.3E-10 67.4 6.8 74 182-259 47-129 (315)
193 COG2521 Predicted archaeal met 97.9 0.00026 5.7E-09 60.6 11.6 128 193-351 132-280 (287)
194 PRK01544 bifunctional N5-gluta 97.9 3.9E-05 8.5E-10 75.3 7.7 93 195-295 347-462 (506)
195 PRK00536 speE spermidine synth 97.8 8.9E-05 1.9E-09 66.0 8.9 87 194-293 71-169 (262)
196 PRK00050 16S rRNA m(4)C1402 me 97.8 4.5E-05 9.7E-10 69.1 7.1 77 182-260 8-97 (296)
197 PF03141 Methyltransf_29: Puta 97.8 1.7E-05 3.7E-10 75.3 3.0 99 194-299 116-223 (506)
198 TIGR00095 RNA methyltransferas 97.7 6.8E-05 1.5E-09 63.9 6.3 96 195-298 49-161 (189)
199 TIGR02085 meth_trns_rumB 23S r 97.7 0.00011 2.3E-09 69.7 7.9 89 195-293 233-332 (374)
200 COG0357 GidB Predicted S-adeno 97.7 0.00011 2.5E-09 63.1 6.4 119 196-349 68-196 (215)
201 COG0030 KsgA Dimethyladenosine 97.6 0.00028 6E-09 62.5 8.6 89 183-276 20-117 (259)
202 KOG3115 Methyltransferase-like 97.6 8.7E-05 1.9E-09 62.1 4.5 100 196-298 61-186 (249)
203 PF07942 N2227: N2227-like pro 97.5 0.0027 5.9E-08 56.7 13.8 134 195-348 56-242 (270)
204 PRK11760 putative 23S rRNA C24 97.5 0.00071 1.5E-08 61.9 9.5 128 193-349 209-341 (357)
205 PRK04338 N(2),N(2)-dimethylgua 97.5 0.00039 8.5E-09 65.7 8.0 90 196-294 58-157 (382)
206 COG0293 FtsJ 23S rRNA methylas 97.5 0.0011 2.3E-08 56.5 9.6 106 183-296 34-160 (205)
207 KOG3987 Uncharacterized conser 97.4 4.2E-05 9.1E-10 64.1 0.8 148 194-350 111-262 (288)
208 PF02475 Met_10: Met-10+ like- 97.4 0.00028 6.2E-09 60.3 5.1 90 193-291 99-198 (200)
209 PF13679 Methyltransf_32: Meth 97.4 0.00056 1.2E-08 55.3 6.6 93 193-295 23-131 (141)
210 COG4076 Predicted RNA methylas 97.3 0.00044 9.5E-09 57.2 5.3 97 197-298 34-138 (252)
211 COG2384 Predicted SAM-dependen 97.3 0.0078 1.7E-07 51.5 13.0 87 194-284 15-112 (226)
212 PF09445 Methyltransf_15: RNA 97.3 0.00013 2.8E-09 60.0 2.3 62 197-260 1-76 (163)
213 COG3897 Predicted methyltransf 97.3 0.0015 3.2E-08 54.7 8.1 103 193-301 77-185 (218)
214 PF01728 FtsJ: FtsJ-like methy 97.3 0.00036 7.8E-09 59.0 4.7 94 195-295 23-139 (181)
215 PF09339 HTH_IclR: IclR helix- 97.2 0.00016 3.4E-09 47.7 1.7 46 41-89 6-51 (52)
216 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0011 2.4E-08 59.6 7.6 91 183-281 20-120 (262)
217 PF03059 NAS: Nicotianamine sy 97.2 0.0012 2.6E-08 59.2 7.6 95 195-293 120-228 (276)
218 TIGR02143 trmA_only tRNA (urac 97.2 0.00036 7.9E-09 65.5 4.3 51 197-249 199-256 (353)
219 COG5459 Predicted rRNA methyla 97.2 0.00017 3.8E-09 65.2 2.0 102 195-299 113-229 (484)
220 TIGR00027 mthyl_TIGR00027 meth 97.2 0.0069 1.5E-07 54.3 12.1 146 194-346 80-248 (260)
221 KOG3201 Uncharacterized conser 97.2 0.00022 4.7E-09 57.5 2.0 95 196-295 30-140 (201)
222 COG4262 Predicted spermidine s 97.1 0.0027 5.9E-08 58.0 9.0 92 194-294 288-406 (508)
223 PRK05031 tRNA (uracil-5-)-meth 97.1 0.00043 9.4E-09 65.2 4.0 51 197-249 208-265 (362)
224 COG0500 SmtA SAM-dependent met 97.1 0.004 8.7E-08 50.4 9.4 96 199-301 52-161 (257)
225 COG1889 NOP1 Fibrillarin-like 97.1 0.026 5.7E-07 47.6 13.5 141 193-359 74-228 (231)
226 COG4798 Predicted methyltransf 97.0 0.0077 1.7E-07 50.3 10.0 140 193-349 46-206 (238)
227 KOG1269 SAM-dependent methyltr 97.0 0.00065 1.4E-08 63.4 3.7 103 194-302 109-222 (364)
228 KOG3420 Predicted RNA methylas 97.0 0.0007 1.5E-08 53.7 3.1 69 194-263 47-124 (185)
229 PF01269 Fibrillarin: Fibrilla 96.9 0.014 3E-07 50.2 10.8 140 193-358 71-225 (229)
230 KOG2915 tRNA(1-methyladenosine 96.9 0.023 4.9E-07 50.1 11.9 105 183-298 95-213 (314)
231 smart00346 HTH_ICLR helix_turn 96.8 0.0019 4.2E-08 47.8 4.4 59 40-106 7-65 (91)
232 TIGR00006 S-adenosyl-methyltra 96.8 0.0047 1E-07 56.2 7.4 76 183-260 10-99 (305)
233 KOG1663 O-methyltransferase [S 96.7 0.01 2.2E-07 51.1 8.6 97 193-298 71-185 (237)
234 PRK11933 yebU rRNA (cytosine-C 96.7 0.011 2.4E-07 57.4 9.8 103 193-298 111-245 (470)
235 PF01170 UPF0020: Putative RNA 96.7 0.0051 1.1E-07 51.9 6.7 100 183-284 18-143 (179)
236 PF12840 HTH_20: Helix-turn-he 96.7 0.0013 2.9E-08 44.8 2.5 55 32-90 4-58 (61)
237 KOG2798 Putative trehalase [Ca 96.7 0.037 7.9E-07 49.9 11.9 138 195-349 150-338 (369)
238 TIGR01444 fkbM_fam methyltrans 96.6 0.0038 8.3E-08 50.3 5.3 52 198-249 1-59 (143)
239 KOG4589 Cell division protein 96.6 0.012 2.6E-07 48.9 7.9 100 187-295 62-184 (232)
240 PF13578 Methyltransf_24: Meth 96.5 0.0021 4.5E-08 49.1 2.7 90 200-295 1-105 (106)
241 COG1092 Predicted SAM-dependen 96.5 0.0066 1.4E-07 57.3 6.4 98 195-297 217-338 (393)
242 PF07091 FmrO: Ribosomal RNA m 96.5 0.0054 1.2E-07 53.7 5.3 98 194-296 104-209 (251)
243 PF02384 N6_Mtase: N-6 DNA Met 96.4 0.011 2.4E-07 54.6 7.8 100 193-295 44-183 (311)
244 PF13463 HTH_27: Winged helix 96.4 0.0037 8.1E-08 43.4 3.6 61 43-106 8-68 (68)
245 PRK10141 DNA-binding transcrip 96.4 0.0038 8.3E-08 48.4 3.8 69 30-105 8-76 (117)
246 smart00550 Zalpha Z-DNA-bindin 96.4 0.0051 1.1E-07 42.9 4.0 60 38-104 6-66 (68)
247 TIGR02987 met_A_Alw26 type II 96.3 0.015 3.3E-07 57.8 8.3 66 195-260 31-119 (524)
248 PF01022 HTH_5: Bacterial regu 96.3 0.0027 5.8E-08 40.7 1.9 44 40-88 4-47 (47)
249 COG1414 IclR Transcriptional r 96.3 0.005 1.1E-07 54.8 4.3 61 41-109 7-67 (246)
250 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.034 7.4E-07 57.2 10.9 112 181-296 177-348 (702)
251 PRK11569 transcriptional repre 96.3 0.0054 1.2E-07 55.6 4.4 61 41-109 31-91 (274)
252 PF11312 DUF3115: Protein of u 96.2 0.0089 1.9E-07 54.0 5.2 99 196-297 87-244 (315)
253 PRK10163 DNA-binding transcrip 96.1 0.0068 1.5E-07 54.8 4.5 61 41-109 28-88 (271)
254 TIGR00308 TRM1 tRNA(guanine-26 96.1 0.024 5.2E-07 53.5 8.1 89 197-294 46-146 (374)
255 TIGR02431 pcaR_pcaU beta-ketoa 96.1 0.0071 1.5E-07 53.9 4.2 59 41-109 12-70 (248)
256 PF03602 Cons_hypoth95: Conser 96.1 0.019 4.1E-07 48.6 6.5 98 195-299 42-156 (183)
257 PRK09834 DNA-binding transcrip 96.0 0.0084 1.8E-07 54.0 4.4 62 41-110 14-75 (263)
258 COG3315 O-Methyltransferase in 96.0 0.04 8.6E-07 50.4 8.8 147 194-346 91-262 (297)
259 KOG2918 Carboxymethyl transfer 96.0 0.15 3.4E-06 45.9 12.1 148 193-349 85-278 (335)
260 PHA00738 putative HTH transcri 95.9 0.0091 2E-07 44.9 3.5 61 39-106 13-73 (108)
261 PRK15090 DNA-binding transcrip 95.9 0.0098 2.1E-07 53.3 4.3 60 41-109 17-76 (257)
262 PLN02668 indole-3-acetate carb 95.8 0.36 7.8E-06 45.6 14.5 103 195-300 63-242 (386)
263 PF07757 AdoMet_MTase: Predict 95.8 0.0078 1.7E-07 45.3 2.6 32 194-227 57-88 (112)
264 PF08461 HTH_12: Ribonuclease 95.8 0.013 2.8E-07 40.5 3.5 59 43-107 3-63 (66)
265 PF14947 HTH_45: Winged helix- 95.7 0.0092 2E-07 42.7 2.8 56 43-110 11-66 (77)
266 PF01795 Methyltransf_5: MraW 95.7 0.026 5.5E-07 51.5 6.3 66 182-249 9-80 (310)
267 PF01978 TrmB: Sugar-specific 95.7 0.0041 8.9E-08 43.3 0.9 47 40-90 10-56 (68)
268 PF03141 Methyltransf_29: Puta 95.7 0.063 1.4E-06 51.6 9.0 94 194-295 364-467 (506)
269 COG2520 Predicted methyltransf 95.7 0.092 2E-06 48.6 9.8 97 194-300 187-294 (341)
270 cd00092 HTH_CRP helix_turn_hel 95.6 0.042 9.2E-07 37.8 5.8 44 52-104 24-67 (67)
271 PF02082 Rrf2: Transcriptional 95.6 0.012 2.6E-07 42.8 3.0 49 52-107 24-72 (83)
272 TIGR02337 HpaR homoprotocatech 95.6 0.038 8.1E-07 43.1 5.9 69 39-111 29-97 (118)
273 COG4301 Uncharacterized conser 95.6 0.056 1.2E-06 47.0 7.3 99 194-295 77-193 (321)
274 PF10672 Methyltrans_SAM: S-ad 95.6 0.031 6.7E-07 50.6 6.1 98 194-295 122-238 (286)
275 PF13412 HTH_24: Winged helix- 95.5 0.015 3.1E-07 37.4 2.8 45 39-87 4-48 (48)
276 PF13601 HTH_34: Winged helix 95.5 0.0042 9.1E-08 44.8 0.2 67 39-109 1-68 (80)
277 COG2265 TrmA SAM-dependent met 95.4 0.034 7.3E-07 53.5 6.3 90 193-293 291-394 (432)
278 KOG2793 Putative N2,N2-dimethy 95.4 0.093 2E-06 46.3 8.4 98 195-298 86-202 (248)
279 PRK10857 DNA-binding transcrip 95.3 0.04 8.6E-07 45.7 5.4 49 52-107 24-72 (164)
280 PF04989 CmcI: Cephalosporin h 95.3 0.054 1.2E-06 46.3 6.3 99 195-298 32-150 (206)
281 PF07109 Mg-por_mtran_C: Magne 95.1 0.048 1E-06 40.4 4.8 84 260-360 2-97 (97)
282 smart00347 HTH_MARR helix_turn 95.1 0.045 9.7E-07 40.9 5.0 68 40-111 12-79 (101)
283 COG1189 Predicted rRNA methyla 95.1 0.16 3.5E-06 44.1 8.7 146 185-349 70-225 (245)
284 smart00419 HTH_CRP helix_turn_ 95.1 0.034 7.3E-07 35.4 3.6 36 52-90 7-42 (48)
285 KOG1709 Guanidinoacetate methy 95.1 0.14 3.1E-06 43.7 8.1 100 194-298 100-209 (271)
286 PF01861 DUF43: Protein of unk 95.1 0.54 1.2E-05 41.1 11.9 94 194-293 43-147 (243)
287 PRK11050 manganese transport r 95.0 0.12 2.7E-06 42.2 7.7 82 14-110 18-99 (152)
288 COG1041 Predicted DNA modifica 95.0 0.31 6.7E-06 45.0 10.7 98 193-295 195-310 (347)
289 PF03492 Methyltransf_7: SAM d 94.9 0.35 7.7E-06 45.0 11.1 149 193-344 14-249 (334)
290 COG0116 Predicted N6-adenine-s 94.7 0.25 5.3E-06 46.3 9.6 78 182-261 180-307 (381)
291 PRK03902 manganese transport t 94.7 0.054 1.2E-06 43.8 4.7 51 51-110 20-70 (142)
292 COG3355 Predicted transcriptio 94.7 0.042 9.1E-07 42.9 3.8 49 40-91 29-77 (126)
293 TIGR02010 IscR iron-sulfur clu 94.7 0.07 1.5E-06 42.7 5.2 51 52-109 24-74 (135)
294 PF09012 FeoC: FeoC like trans 94.5 0.026 5.6E-07 39.4 2.1 44 43-90 5-48 (69)
295 KOG4058 Uncharacterized conser 94.5 0.097 2.1E-06 41.9 5.3 104 184-298 63-175 (199)
296 KOG2730 Methylase [General fun 94.5 0.024 5.1E-07 48.5 2.0 53 195-249 94-154 (263)
297 PF01638 HxlR: HxlR-like helix 94.3 0.055 1.2E-06 39.9 3.5 64 43-111 10-74 (90)
298 PRK11512 DNA-binding transcrip 94.0 0.088 1.9E-06 42.6 4.6 68 40-111 42-109 (144)
299 PF04967 HTH_10: HTH DNA bindi 94.0 0.1 2.2E-06 34.2 3.9 43 31-80 5-47 (53)
300 KOG2352 Predicted spermine/spe 94.0 0.52 1.1E-05 45.3 10.1 102 197-302 50-170 (482)
301 KOG0822 Protein kinase inhibit 93.9 0.29 6.2E-06 47.4 8.3 123 154-284 332-470 (649)
302 PF04703 FaeA: FaeA-like prote 93.8 0.042 9.2E-07 37.3 1.9 46 42-90 4-49 (62)
303 PF05958 tRNA_U5-meth_tr: tRNA 93.8 0.051 1.1E-06 51.0 3.2 48 198-247 199-253 (352)
304 PRK10742 putative methyltransf 93.8 0.14 3.1E-06 45.1 5.7 73 183-259 76-170 (250)
305 TIGR02702 SufR_cyano iron-sulf 93.6 0.084 1.8E-06 45.5 4.0 68 41-112 4-73 (203)
306 KOG2187 tRNA uracil-5-methyltr 93.6 0.069 1.5E-06 51.4 3.6 55 193-249 381-442 (534)
307 COG4742 Predicted transcriptio 93.6 0.11 2.4E-06 46.0 4.7 67 33-111 8-74 (260)
308 COG1321 TroR Mn-dependent tran 93.6 0.12 2.7E-06 42.2 4.6 52 51-111 22-73 (154)
309 COG1959 Predicted transcriptio 93.6 0.087 1.9E-06 43.0 3.7 51 52-109 24-74 (150)
310 COG0275 Predicted S-adenosylme 93.5 0.19 4.1E-06 45.3 6.0 66 182-249 12-84 (314)
311 PF10354 DUF2431: Domain of un 93.5 1.2 2.6E-05 37.0 10.4 120 201-349 2-153 (166)
312 PF08220 HTH_DeoR: DeoR-like h 93.5 0.1 2.2E-06 34.9 3.2 45 42-90 4-48 (57)
313 TIGR00738 rrf2_super rrf2 fami 93.4 0.1 2.2E-06 41.5 3.8 51 52-109 24-74 (132)
314 PF12802 MarR_2: MarR family; 93.3 0.062 1.3E-06 36.3 2.1 47 40-90 7-55 (62)
315 COG0742 N6-adenine-specific me 93.3 0.53 1.1E-05 39.6 8.0 100 195-299 43-157 (187)
316 PRK03573 transcriptional regul 93.1 0.2 4.4E-06 40.4 5.2 67 42-111 35-101 (144)
317 TIGR00122 birA_repr_reg BirA b 93.0 0.12 2.5E-06 36.0 3.2 56 40-106 2-57 (69)
318 TIGR01889 Staph_reg_Sar staphy 92.9 0.2 4.3E-06 38.4 4.6 68 40-110 27-97 (109)
319 smart00418 HTH_ARSR helix_turn 92.8 0.23 5.1E-06 33.3 4.6 54 43-104 2-55 (66)
320 COG1064 AdhP Zn-dependent alco 92.8 0.96 2.1E-05 41.9 9.7 93 193-298 164-262 (339)
321 TIGR01884 cas_HTH CRISPR locus 92.8 0.12 2.7E-06 44.4 3.8 59 40-106 145-203 (203)
322 PF03514 GRAS: GRAS domain fam 92.6 2.4 5.3E-05 40.2 12.5 112 183-301 100-249 (374)
323 PF01047 MarR: MarR family; I 92.6 0.067 1.4E-06 35.8 1.4 46 41-90 6-51 (59)
324 smart00529 HTH_DTXR Helix-turn 92.4 0.21 4.6E-06 37.1 4.2 46 56-110 2-47 (96)
325 PRK11920 rirA iron-responsive 92.3 0.18 4E-06 41.2 4.0 59 52-123 23-81 (153)
326 PF01726 LexA_DNA_bind: LexA D 92.3 0.14 2.9E-06 35.3 2.7 38 51-90 23-60 (65)
327 cd00090 HTH_ARSR Arsenical Res 92.3 0.21 4.5E-06 34.8 3.8 57 40-104 9-65 (78)
328 PF08279 HTH_11: HTH domain; 92.1 0.17 3.7E-06 33.3 2.9 40 42-84 4-43 (55)
329 PF04072 LCM: Leucine carboxyl 92.1 0.54 1.2E-05 39.7 6.7 85 195-279 78-183 (183)
330 PF05971 Methyltransf_10: Prot 92.1 0.35 7.5E-06 44.0 5.7 74 195-268 102-192 (299)
331 KOG3924 Putative protein methy 92.0 0.32 7E-06 45.4 5.5 103 193-301 190-314 (419)
332 TIGR02944 suf_reg_Xantho FeS a 91.9 0.17 3.7E-06 40.1 3.3 46 52-104 24-69 (130)
333 KOG1099 SAM-dependent methyltr 91.9 0.67 1.5E-05 40.1 6.9 93 193-292 39-160 (294)
334 cd07377 WHTH_GntR Winged helix 91.9 0.49 1.1E-05 32.0 5.2 34 54-90 26-59 (66)
335 PF06859 Bin3: Bicoid-interact 91.8 0.098 2.1E-06 39.8 1.6 88 253-350 1-94 (110)
336 COG2345 Predicted transcriptio 91.6 0.17 3.7E-06 43.6 3.1 69 41-113 14-84 (218)
337 smart00345 HTH_GNTR helix_turn 91.5 0.34 7.4E-06 32.1 4.0 36 52-90 18-54 (60)
338 COG1497 Predicted transcriptio 91.4 0.16 3.6E-06 43.9 2.8 72 41-121 13-84 (260)
339 KOG1562 Spermidine synthase [A 91.4 0.45 9.8E-06 42.7 5.6 101 193-297 119-238 (337)
340 PRK11014 transcriptional repre 91.4 0.3 6.6E-06 39.3 4.3 62 33-105 9-70 (141)
341 PF03686 UPF0146: Uncharacteri 91.4 0.79 1.7E-05 35.9 6.2 86 194-296 12-103 (127)
342 smart00420 HTH_DEOR helix_turn 91.4 0.3 6.5E-06 31.4 3.5 44 43-90 5-48 (53)
343 COG4189 Predicted transcriptio 91.3 0.33 7.1E-06 41.8 4.4 55 31-89 16-70 (308)
344 COG1255 Uncharacterized protei 91.2 3.1 6.7E-05 31.9 9.0 77 195-283 13-95 (129)
345 COG4190 Predicted transcriptio 91.0 0.28 6.2E-06 38.2 3.4 50 37-90 63-112 (144)
346 COG1568 Predicted methyltransf 90.9 1.3 2.8E-05 39.5 7.8 193 55-284 36-249 (354)
347 PRK10870 transcriptional repre 90.6 0.51 1.1E-05 39.6 5.0 68 41-111 58-126 (176)
348 PRK06266 transcription initiat 90.6 0.44 9.4E-06 40.0 4.5 46 40-89 24-69 (178)
349 COG4627 Uncharacterized protei 90.5 0.091 2E-06 42.4 0.4 41 253-296 47-87 (185)
350 PF07381 DUF1495: Winged helix 90.5 0.47 1E-05 34.8 4.1 68 37-110 8-87 (90)
351 COG1733 Predicted transcriptio 90.5 1 2.3E-05 35.1 6.3 82 16-111 10-92 (120)
352 PRK14165 winged helix-turn-hel 90.4 0.54 1.2E-05 40.7 5.1 60 45-111 14-73 (217)
353 PRK06474 hypothetical protein; 90.4 0.33 7.2E-06 40.8 3.7 73 32-107 5-80 (178)
354 smart00344 HTH_ASNC helix_turn 90.2 0.32 6.9E-06 37.0 3.2 47 39-89 4-50 (108)
355 PF01325 Fe_dep_repress: Iron 90.1 0.34 7.5E-06 32.7 2.9 37 51-90 20-56 (60)
356 cd07153 Fur_like Ferric uptake 90.0 0.38 8.1E-06 37.2 3.5 51 40-90 3-55 (116)
357 COG0144 Sun tRNA and rRNA cyto 90.0 3.7 8E-05 38.7 10.7 105 193-300 154-293 (355)
358 PF12692 Methyltransf_17: S-ad 89.3 0.4 8.8E-06 38.4 3.1 54 196-249 29-82 (160)
359 PF06962 rRNA_methylase: Putat 89.3 0.65 1.4E-05 37.2 4.3 104 221-349 1-126 (140)
360 PRK15431 ferrous iron transpor 89.2 0.56 1.2E-05 33.2 3.4 43 44-90 8-50 (78)
361 PF11899 DUF3419: Protein of u 89.1 0.66 1.4E-05 43.9 5.0 61 237-300 274-339 (380)
362 cd00315 Cyt_C5_DNA_methylase C 88.2 3.7 8.1E-05 37.1 9.1 122 198-344 2-139 (275)
363 PF14394 DUF4423: Domain of un 88.0 0.7 1.5E-05 38.6 3.9 47 53-108 39-87 (171)
364 COG3432 Predicted transcriptio 87.9 0.29 6.3E-06 36.2 1.4 54 51-110 29-82 (95)
365 PF03444 HrcA_DNA-bdg: Winged 87.9 1 2.2E-05 32.0 4.1 49 51-107 21-70 (78)
366 PRK13777 transcriptional regul 87.7 1.1 2.4E-05 37.8 5.0 67 41-111 48-114 (185)
367 PF00325 Crp: Bacterial regula 87.6 0.55 1.2E-05 27.2 2.2 31 53-86 2-32 (32)
368 COG1565 Uncharacterized conser 87.5 1.1 2.4E-05 41.6 5.1 62 164-231 52-122 (370)
369 PF01189 Nol1_Nop2_Fmu: NOL1/N 87.3 1.8 3.8E-05 39.4 6.5 104 193-299 83-223 (283)
370 PRK01747 mnmC bifunctional tRN 87.1 1.5 3.2E-05 45.0 6.6 97 194-293 56-204 (662)
371 TIGR00373 conserved hypothetic 87.1 0.66 1.4E-05 38.2 3.2 46 41-90 17-62 (158)
372 COG1846 MarR Transcriptional r 86.7 1 2.2E-05 34.7 4.1 71 38-112 22-92 (126)
373 cd08283 FDH_like_1 Glutathione 86.6 5 0.00011 38.1 9.5 100 193-297 182-308 (386)
374 TIGR01610 phage_O_Nterm phage 86.3 1.2 2.6E-05 33.2 4.0 44 52-103 46-89 (95)
375 PF04445 SAM_MT: Putative SAM- 86.1 0.93 2E-05 39.7 3.8 77 183-263 63-161 (234)
376 PF02319 E2F_TDP: E2F/DP famil 85.8 0.51 1.1E-05 33.1 1.7 45 43-90 16-63 (71)
377 PRK04172 pheS phenylalanyl-tRN 85.7 0.91 2E-05 44.7 4.0 65 40-112 8-72 (489)
378 PF06163 DUF977: Bacterial pro 85.3 1.3 2.9E-05 34.4 3.8 51 36-90 10-60 (127)
379 PRK11179 DNA-binding transcrip 85.2 0.95 2.1E-05 37.0 3.3 47 39-89 10-56 (153)
380 PF07789 DUF1627: Protein of u 85.1 1.4 3E-05 35.2 4.0 46 52-103 5-50 (155)
381 PRK11169 leucine-responsive tr 84.7 1 2.2E-05 37.3 3.3 48 38-89 14-61 (164)
382 PF04182 B-block_TFIIIC: B-blo 84.4 0.97 2.1E-05 32.0 2.6 49 39-90 3-52 (75)
383 PF02254 TrkA_N: TrkA-N domain 84.4 4.9 0.00011 30.7 6.9 81 204-293 4-94 (116)
384 PF02636 Methyltransf_28: Puta 84.3 2.3 4.9E-05 37.9 5.6 35 196-230 19-62 (252)
385 COG1063 Tdh Threonine dehydrog 84.2 3.6 7.9E-05 38.6 7.2 94 196-300 169-274 (350)
386 PLN02853 Probable phenylalanyl 83.7 1.3 2.8E-05 43.0 3.9 69 38-114 3-73 (492)
387 PRK05638 threonine synthase; V 83.1 1.8 3.9E-05 42.1 4.7 63 41-110 374-438 (442)
388 KOG1501 Arginine N-methyltrans 83.0 1.3 2.9E-05 42.0 3.5 89 194-283 65-165 (636)
389 PF10007 DUF2250: Uncharacteri 82.8 1.4 3E-05 32.5 2.9 47 40-90 9-55 (92)
390 PHA02943 hypothetical protein; 82.4 1.7 3.7E-05 34.9 3.4 56 41-104 14-69 (165)
391 COG4565 CitB Response regulato 82.4 1.4 2.9E-05 37.8 3.1 43 44-89 164-206 (224)
392 PF13545 HTH_Crp_2: Crp-like h 82.0 1.7 3.7E-05 30.5 3.2 52 33-90 6-62 (76)
393 PRK07417 arogenate dehydrogena 82.0 4.8 0.0001 36.4 6.8 79 198-284 2-83 (279)
394 COG5631 Predicted transcriptio 81.9 4.4 9.5E-05 32.9 5.6 79 26-109 64-149 (199)
395 PF05206 TRM13: Methyltransfer 81.7 2.4 5.1E-05 38.0 4.6 36 193-228 16-56 (259)
396 PTZ00326 phenylalanyl-tRNA syn 81.3 2.1 4.5E-05 41.8 4.3 69 39-114 7-76 (494)
397 PRK04214 rbn ribonuclease BN/u 81.2 1.9 4.2E-05 41.5 4.1 47 51-106 308-354 (412)
398 COG1522 Lrp Transcriptional re 81.2 1.7 3.7E-05 35.3 3.3 48 39-90 9-56 (154)
399 PF02153 PDH: Prephenate dehyd 80.9 1.9 4.1E-05 38.6 3.8 70 209-284 1-71 (258)
400 COG1378 Predicted transcriptio 80.5 2.5 5.3E-05 37.6 4.2 63 40-110 18-80 (247)
401 PF01210 NAD_Gly3P_dh_N: NAD-d 80.5 1.8 4E-05 35.4 3.3 86 198-293 1-100 (157)
402 PF05430 Methyltransf_30: S-ad 80.3 9.4 0.0002 29.9 7.0 54 272-360 70-123 (124)
403 PF12793 SgrR_N: Sugar transpo 80.1 2 4.3E-05 33.2 3.1 36 52-90 18-53 (115)
404 KOG2920 Predicted methyltransf 80.1 2 4.4E-05 38.5 3.5 39 194-233 115-154 (282)
405 PRK07502 cyclohexadienyl dehyd 79.8 7.3 0.00016 35.7 7.4 84 196-284 6-92 (307)
406 COG3413 Predicted DNA binding 79.7 2.9 6.2E-05 36.3 4.4 43 30-79 159-201 (215)
407 PF08784 RPA_C: Replication pr 79.6 1.5 3.2E-05 33.1 2.2 48 40-90 49-99 (102)
408 COG1510 Predicted transcriptio 79.4 1.9 4.1E-05 35.5 2.9 38 50-90 38-75 (177)
409 COG3510 CmcI Cephalosporin hyd 79.4 15 0.00033 31.1 8.2 105 194-303 68-188 (237)
410 PF09929 DUF2161: Uncharacteri 79.3 2.3 4.9E-05 32.8 3.1 58 31-107 58-115 (118)
411 KOG1209 1-Acyl dihydroxyaceton 79.2 31 0.00066 29.9 10.0 76 194-293 5-84 (289)
412 KOG0024 Sorbitol dehydrogenase 78.7 9.7 0.00021 35.0 7.4 97 193-300 167-278 (354)
413 TIGR02147 Fsuc_second hypothet 78.6 2.7 5.8E-05 37.9 3.9 49 52-107 136-184 (271)
414 COG2512 Predicted membrane-ass 78.5 1.8 3.8E-05 38.7 2.7 49 40-91 197-245 (258)
415 PF00392 GntR: Bacterial regul 78.5 4.7 0.0001 27.3 4.3 37 51-90 21-58 (64)
416 COG0287 TyrA Prephenate dehydr 78.3 9 0.0002 34.7 7.2 82 197-284 4-90 (279)
417 PTZ00357 methyltransferase; Pr 78.2 4.7 0.0001 40.8 5.6 130 154-284 639-823 (1072)
418 PRK13509 transcriptional repre 78.1 2.3 5E-05 37.9 3.4 47 40-90 7-53 (251)
419 cd08237 ribitol-5-phosphate_DH 77.9 22 0.00048 33.0 10.1 93 194-296 162-257 (341)
420 TIGR00498 lexA SOS regulatory 77.6 3.1 6.7E-05 35.5 3.9 37 52-90 24-60 (199)
421 TIGR00675 dcm DNA-methyltransf 77.3 11 0.00025 34.7 7.8 118 199-344 1-136 (315)
422 PF13730 HTH_36: Helix-turn-he 77.2 2.6 5.6E-05 27.5 2.6 29 55-86 27-55 (55)
423 PF13460 NAD_binding_10: NADH( 77.2 34 0.00075 28.1 10.2 87 202-296 3-98 (183)
424 PF05732 RepL: Firmicute plasm 76.6 2.9 6.3E-05 34.6 3.3 45 53-106 75-119 (165)
425 PF00376 MerR: MerR family reg 76.6 2.4 5.2E-05 25.6 2.1 28 55-89 1-28 (38)
426 PF12324 HTH_15: Helix-turn-he 76.4 4.3 9.3E-05 28.7 3.6 41 43-90 29-69 (77)
427 TIGR01202 bchC 2-desacetyl-2-h 76.2 29 0.00062 31.7 10.2 86 195-296 144-232 (308)
428 KOG2539 Mitochondrial/chloropl 76.1 6.6 0.00014 37.8 5.8 101 196-299 201-319 (491)
429 PRK09424 pntA NAD(P) transhydr 75.7 19 0.00041 35.7 9.1 96 194-296 163-286 (509)
430 PF02002 TFIIE_alpha: TFIIE al 75.4 1.6 3.5E-05 33.1 1.4 46 41-90 16-61 (105)
431 PRK11886 bifunctional biotin-- 75.4 3 6.5E-05 38.6 3.4 58 40-106 6-63 (319)
432 COG5379 BtaA S-adenosylmethion 74.5 3.9 8.5E-05 36.8 3.7 58 237-297 306-368 (414)
433 PRK10906 DNA-binding transcrip 74.5 2.9 6.2E-05 37.3 3.0 47 40-90 7-53 (252)
434 PF01475 FUR: Ferric uptake re 74.1 2.2 4.8E-05 33.1 1.9 66 37-104 7-74 (120)
435 PF13404 HTH_AsnC-type: AsnC-t 73.8 3.1 6.8E-05 25.7 2.1 27 39-66 4-30 (42)
436 PF05584 Sulfolobus_pRN: Sulfo 73.3 5.2 0.00011 27.9 3.3 44 42-90 9-52 (72)
437 PRK10411 DNA-binding transcrip 72.7 4.3 9.4E-05 35.9 3.6 47 40-90 6-52 (240)
438 KOG1596 Fibrillarin and relate 72.6 42 0.00092 29.6 9.3 101 193-300 154-266 (317)
439 PRK12423 LexA repressor; Provi 72.1 3.9 8.4E-05 35.1 3.1 36 53-90 25-60 (202)
440 PRK09775 putative DNA-binding 71.8 4 8.6E-05 39.6 3.4 53 43-105 5-57 (442)
441 PF03721 UDPG_MGDP_dh_N: UDP-g 71.6 7.6 0.00016 32.8 4.7 99 198-301 2-125 (185)
442 PF06969 HemN_C: HemN C-termin 71.0 3.9 8.4E-05 27.8 2.3 47 52-107 19-65 (66)
443 PRK10434 srlR DNA-bindng trans 71.0 3.7 8E-05 36.7 2.8 47 40-90 7-53 (256)
444 PF05711 TylF: Macrocin-O-meth 70.8 7.7 0.00017 34.4 4.7 93 196-293 75-210 (248)
445 PF13518 HTH_28: Helix-turn-he 70.7 4.9 0.00011 25.6 2.7 30 53-85 12-41 (52)
446 PF03269 DUF268: Caenorhabditi 70.6 5.4 0.00012 32.7 3.3 99 197-300 3-116 (177)
447 PRK11639 zinc uptake transcrip 70.6 6.5 0.00014 32.7 4.0 54 37-90 25-80 (169)
448 COG2933 Predicted SAM-dependen 70.3 17 0.00036 32.5 6.5 84 193-284 209-295 (358)
449 PRK09802 DNA-binding transcrip 70.2 4.4 9.6E-05 36.5 3.2 48 39-90 18-65 (269)
450 PRK00215 LexA repressor; Valid 70.0 5.8 0.00013 34.0 3.8 37 51-90 21-58 (205)
451 cd01842 SGNH_hydrolase_like_5 69.9 8.3 0.00018 32.2 4.4 43 253-299 50-102 (183)
452 KOG2651 rRNA adenine N-6-methy 69.3 7.5 0.00016 36.5 4.3 35 193-228 151-185 (476)
453 PF05331 DUF742: Protein of un 69.1 6.1 0.00013 30.5 3.2 42 43-90 48-89 (114)
454 TIGR01321 TrpR trp operon repr 69.1 4.8 0.0001 29.8 2.5 41 36-81 40-80 (94)
455 TIGR01470 cysG_Nterm siroheme 68.9 13 0.00028 32.0 5.6 64 195-260 8-76 (205)
456 PRK06719 precorrin-2 dehydroge 68.9 33 0.00072 28.0 7.8 64 194-260 11-77 (157)
457 PRK05562 precorrin-2 dehydroge 68.8 28 0.00061 30.3 7.7 64 194-260 23-92 (223)
458 PF07279 DUF1442: Protein of u 68.8 77 0.0017 27.4 10.1 96 194-299 40-152 (218)
459 KOG2352 Predicted spermine/spe 68.2 9.7 0.00021 36.9 5.1 103 194-300 294-421 (482)
460 PRK08507 prephenate dehydrogen 68.0 15 0.00032 33.1 6.2 79 198-284 2-83 (275)
461 PRK09880 L-idonate 5-dehydroge 68.0 19 0.00041 33.4 7.1 92 194-296 168-267 (343)
462 COG1349 GlpR Transcriptional r 67.9 4.9 0.00011 35.9 2.9 47 40-90 7-53 (253)
463 PF11599 AviRa: RRNA methyltra 66.9 22 0.00047 30.8 6.3 97 194-293 50-212 (246)
464 PF14740 DUF4471: Domain of un 65.9 4.2 9.2E-05 36.9 2.1 81 237-346 199-287 (289)
465 PF03807 F420_oxidored: NADP o 65.7 2.9 6.2E-05 30.8 0.9 84 199-294 2-92 (96)
466 COG0735 Fur Fe2+/Zn2+ uptake r 65.7 6.8 0.00015 31.7 3.1 53 38-90 21-75 (145)
467 PRK05225 ketol-acid reductoiso 65.6 5.5 0.00012 38.5 2.9 92 195-297 35-133 (487)
468 PF07991 IlvN: Acetohydroxy ac 65.5 8.8 0.00019 31.6 3.7 90 195-295 3-95 (165)
469 PRK10046 dpiA two-component re 65.0 6.4 0.00014 34.1 3.1 46 42-90 166-211 (225)
470 KOG1269 SAM-dependent methyltr 65.0 20 0.00043 33.8 6.4 105 195-304 180-322 (364)
471 PRK03659 glutathione-regulated 64.7 29 0.00063 35.2 8.1 85 198-293 402-496 (601)
472 COG1748 LYS9 Saccharopine dehy 64.6 34 0.00074 32.6 7.9 64 197-260 2-75 (389)
473 PRK11642 exoribonuclease R; Pr 64.0 7.7 0.00017 40.8 3.8 48 43-90 24-72 (813)
474 TIGR03433 padR_acidobact trans 63.9 22 0.00047 26.6 5.4 65 43-110 9-81 (100)
475 PRK10736 hypothetical protein; 63.8 7.7 0.00017 36.6 3.5 52 41-103 311-362 (374)
476 PRK09334 30S ribosomal protein 63.8 7.7 0.00017 28.2 2.7 36 52-90 40-75 (86)
477 PF08221 HTH_9: RNA polymerase 63.3 6.3 0.00014 26.7 2.1 43 43-89 18-60 (62)
478 PF03428 RP-C: Replication pro 63.2 9.1 0.0002 32.1 3.5 35 53-90 70-105 (177)
479 PF14338 Mrr_N: Mrr N-terminal 63.0 6.8 0.00015 28.8 2.4 63 43-112 25-90 (92)
480 PRK11753 DNA-binding transcrip 62.8 9 0.0002 32.6 3.6 35 53-90 168-202 (211)
481 PRK09462 fur ferric uptake reg 62.2 9.6 0.00021 30.8 3.4 54 37-90 16-72 (148)
482 COG0686 Ald Alanine dehydrogen 61.6 32 0.00068 31.6 6.7 90 196-291 168-264 (371)
483 PF13384 HTH_23: Homeodomain-l 61.1 4.8 0.0001 25.6 1.2 40 40-85 7-46 (50)
484 COG0604 Qor NADPH:quinone redu 60.8 16 0.00035 33.9 5.0 94 193-298 140-244 (326)
485 TIGR02787 codY_Gpos GTP-sensin 60.7 10 0.00022 33.3 3.3 46 42-90 187-232 (251)
486 TIGR03879 near_KaiC_dom probab 60.3 5.3 0.00011 28.1 1.3 34 52-88 31-64 (73)
487 PHA02701 ORF020 dsRNA-binding 60.1 11 0.00023 31.6 3.3 49 39-90 5-53 (183)
488 PF14557 AphA_like: Putative A 60.1 15 0.00033 30.2 4.1 69 36-107 9-83 (175)
489 PHA01634 hypothetical protein 60.1 12 0.00026 29.4 3.4 39 195-235 28-68 (156)
490 PRK11161 fumarate/nitrate redu 59.4 11 0.00024 32.8 3.6 35 53-90 184-218 (235)
491 PF00107 ADH_zinc_N: Zinc-bind 59.3 21 0.00046 27.5 4.9 82 205-298 1-92 (130)
492 PF13241 NAD_binding_7: Putati 59.0 73 0.0016 23.7 7.9 61 195-260 6-67 (103)
493 PF13814 Replic_Relax: Replica 58.8 17 0.00038 30.5 4.6 65 46-111 3-71 (191)
494 COG0541 Ffh Signal recognition 58.8 34 0.00073 32.9 6.7 105 195-302 99-228 (451)
495 TIGR00635 ruvB Holliday juncti 58.8 10 0.00022 34.6 3.4 37 51-90 253-290 (305)
496 PRK11064 wecC UDP-N-acetyl-D-m 58.6 97 0.0021 29.8 10.1 97 197-300 4-123 (415)
497 TIGR03697 NtcA_cyano global ni 58.5 11 0.00023 31.6 3.2 36 52-90 142-177 (193)
498 PF03297 Ribosomal_S25: S25 ri 58.5 12 0.00026 28.4 3.0 36 52-90 58-93 (105)
499 COG4017 Uncharacterized protei 58.4 99 0.0021 26.3 8.6 88 193-298 42-132 (254)
500 PF09821 AAA_assoc_C: C-termin 58.3 18 0.00039 28.2 4.1 75 58-143 2-76 (120)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=303.80 Aligned_cols=332 Identities=30% Similarity=0.435 Sum_probs=286.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcC--CCCCCcccHHHHHHHHHhCCceeccccCCC
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALK--IQPTKTSNLFRFMRLLVHMGLFSKTKVGGE 94 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~--~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~ 94 (360)
+...+++++++++..+++|++|+|||+||.|+++ ++ ..|+|..+. .+|.++.++.|+||.|++.++++..-.
T Consensus 5 ~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~--- 78 (342)
T KOG3178|consen 5 EASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV--- 78 (342)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee---
Confidence 4567899999999999999999999999999974 23 888888777 566678999999999999999998752
Q ss_pred CcccceecchhhhhhhcC-CCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHH
Q 018116 95 KEEEAYGLTAISALLIKD-KSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQA 173 (360)
Q Consensus 95 ~~~~~y~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (360)
+.. .|+++|.++++..+ +..++..++.........+.|..+.++++.+. .+|..++|...++|...+......++++
T Consensus 79 ~~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~s 156 (342)
T KOG3178|consen 79 GGE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGS 156 (342)
T ss_pred cce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHH
Confidence 112 79999999966643 33578888877777788999999999999988 5888899988899999999888999999
Q ss_pred hhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCC-CCeEEEeCCCCCCCC
Q 018116 174 MISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQT-ENLKYIAGDMFQYIP 252 (360)
Q Consensus 174 m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~ri~~~~~D~~~~~p 252 (360)
|..........+++.+. .++.....||||+|.|..+..++..||+++.+.+|+|.+++.+... +.|+.+.+|++++.|
T Consensus 157 m~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P 235 (342)
T KOG3178|consen 157 MSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP 235 (342)
T ss_pred HHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCC
Confidence 98887777666666665 3778899999999999999999999999999999999999998865 779999999999999
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhh-hhHhHhhhhhhhccc-CCcccCHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQV-TEAKLLGDTLMSVSV-DGKERTDE 330 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~-~~~~~~~d~~~~~~~-~g~~~t~~ 330 (360)
..|+|++.++||||+|++|+++|+|+++.|+| ||+|++.|.+.++....... ......+|+.|+... +|+.|+.+
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~ 312 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLK 312 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHH
Confidence 99999999999999999999999999999999 99999999988863222111 223456788888775 69999999
Q ss_pred HHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 331 EWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
||..++.++||.+..+...+...++|+++|
T Consensus 313 e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 313 EFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999999986
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=8.4e-39 Score=284.54 Aligned_cols=235 Identities=32% Similarity=0.634 Sum_probs=203.2
Q ss_pred ccceecchhhhhhhcCCC-CChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhh
Q 018116 97 EEAYGLTAISALLIKDKS-YCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI 175 (360)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 175 (360)
+++|++|+.|+.|..+++ .++..++.+...+..+..|.+|.+++++|. ++|+..+|.++|+++.++++..+.|..+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 589999999997776664 467777666556678899999999999998 789999999999999999999999999999
Q ss_pred hCcchhH-HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCCc
Q 018116 176 SDSEMAI-FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 176 ~~~~~~~-~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~p~~ 254 (360)
..+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred hhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 9887776 77778888 78889999999999999999999999999999999999999888999999999999888889
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCC--cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGER--GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
|+|+++++||+|++++++++|++++++|+| | |+|+|+|.+.++....+........+|+.|++.++|+.||.+||
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~ 236 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEW 236 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 999999999999999999999999999999 8 99999999999887765332223588999998888999999999
Q ss_pred HHHHH
Q 018116 333 KTLFL 337 (360)
Q Consensus 333 ~~ll~ 337 (360)
++||+
T Consensus 237 ~~ll~ 241 (241)
T PF00891_consen 237 EALLK 241 (241)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=8e-38 Score=287.69 Aligned_cols=289 Identities=20% Similarity=0.318 Sum_probs=210.8
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
...+|++|+++||||+|.. +|.|++|||+++|+ +++.+.|||++|+++|++++. +++|++|+.+..+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~-------~~~y~~t~~~~~~l 70 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE-------DGKWSLTEFADYMF 70 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEec-------CCcEecchhHHhhc
Confidence 4679999999999999986 79999999999999 569999999999999999987 48999999998554
Q ss_pred cC-CCC---ChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhh-hCcchhHHHH
Q 018116 111 KD-KSY---CLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI-SDSEMAIFIV 185 (360)
Q Consensus 111 ~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~~ 185 (360)
.+ ++. ++..++.+. .......|.+|++++|++ ++|...++ +....+.. ..|...|. .......+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~--~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~l 141 (306)
T TIGR02716 71 SPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQ--KNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQLL 141 (306)
T ss_pred cCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCC--cccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHHHH
Confidence 44 321 112333322 111235688999999854 34432221 11111122 23333333 3333444556
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEE
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAY 257 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i 257 (360)
++.++ +++..+|||||||+|.+++.+++++|+++++++|+|.+++.+++ .+|++++.+|+++ ++|++|+|
T Consensus 142 ~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v 219 (306)
T TIGR02716 142 LEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAV 219 (306)
T ss_pred HHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEE
Confidence 66666 77889999999999999999999999999999999888877653 5789999999987 67789999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHh-HhhhhhhhcccCCcccCHHHHHHHH
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAK-LLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
++++++|+|+++++.++|++++++|+| ||+++|.|.+.++..... +.... ......+.... ...++.++|.++|
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll 294 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFSV-LGFKEQARYKEIL 294 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCch-hhHHHHHHHHccccccc-ccCCCHHHHHHHH
Confidence 999999999999899999999999999 999999999876644321 11101 11111111111 1234689999999
Q ss_pred HHCCCceeEEE
Q 018116 337 LDAGFTHYKIT 347 (360)
Q Consensus 337 ~~aGf~~~~~~ 347 (360)
+++||+.+++.
T Consensus 295 ~~aGf~~v~~~ 305 (306)
T TIGR02716 295 ESLGYKDVTMV 305 (306)
T ss_pred HHcCCCeeEec
Confidence 99999987653
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.76 E-value=1.8e-18 Score=153.57 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=120.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~~~~ 262 (360)
.+..+|||||||+|..+..+++.+ |+++++++|+ +.+++.+++ ..+++++.+|+.+ +.+.+|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 466799999999999999999874 7899999999 999988763 3579999999987 5668999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh-----------------cc-cCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS-----------------VS-VDG 324 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----------------~~-~~g 324 (360)
+||+++++..++|++++++|+| ||.+++.|.+......... ....+... .. ..-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 9999988888999999999999 9999999987755432210 01111000 00 012
Q ss_pred cccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 325 KERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
...|.+++.++++++||+.+++......+..+.++
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 34689999999999999977665544444444443
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.76 E-value=4e-17 Score=141.79 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=121.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
.++.+|||||||||.++..+++..+..+++++|+ +.|++.+++ ...++|+.+|+.. |+| +||+|.+++.|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 4689999999999999999999999999999999 999998875 1239999999988 887 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhh-hh-hhcc-c--CC-----------ccc
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGD-TL-MSVS-V--DG-----------KER 327 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d-~~-~~~~-~--~g-----------~~~ 327 (360)
++++|. .+.|++++|+|+| ||+++++|...+.......... ...+. +. .... . +. +..
T Consensus 130 rnv~d~--~~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~~~~~-~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 130 RNVTDI--DKALKEMYRVLKP---GGRLLVLEFSKPDNPVLRKAYI-LYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hcCCCH--HHHHHHHHHhhcC---CeEEEEEEcCCCCchhhHHHHH-HHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 999975 4779999999999 9999999998876543311100 01111 00 0000 0 11 234
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCce-eEEEE
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGLK-SLIEV 358 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~-~vi~~ 358 (360)
+.+++.+.++++||+.+....+.++. .+...
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g 235 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIVALHRG 235 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeEEEEEE
Confidence 78999999999999999877775443 34343
No 6
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.75 E-value=4.5e-17 Score=146.26 Aligned_cols=156 Identities=18% Similarity=0.270 Sum_probs=119.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~ 254 (360)
..++..+. ..+..+|||||||+|..+..+++.+ +++++++|+ +.+++.+++ .+++.+..+|+.+ +++ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 34555555 6788999999999999999998775 679999999 888877653 4689999999876 555 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..+++|++.++..++|++++++|+| ||++++.+.......... . ..... .. .......+.++|.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~~-~~-~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKAY-IK-KRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHHH-HH-hcCCCCCCHHHHHH
Confidence 999999999999876778999999999999 999999998765432211 0 01010 00 01123458999999
Q ss_pred HHHHCCCceeEEEeeCC
Q 018116 335 LFLDAGFTHYKITNVFG 351 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~ 351 (360)
+++++||+.+++.++..
T Consensus 189 ~l~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 189 LIKSCNFQNVVAKDISD 205 (263)
T ss_pred HHHHCCCCeeeEEeCcH
Confidence 99999999999887643
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=8.8e-18 Score=149.72 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=114.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEA--FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~~~~ 262 (360)
.+..+|||||||+|..+..+++. +|+.+++++|. +.+++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 56789999999999999999884 58999999999 999988864 3489999999977 5667999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh------------hh-cccC-CcccC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL------------MS-VSVD-GKERT 328 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~------------~~-~~~~-g~~~t 328 (360)
+|++++++..+++++++++|+| ||.+++.|.+..+....... ......+.. +. ...+ -...+
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 9999988888999999999999 99999999876654432210 000111110 00 0000 12348
Q ss_pred HHHHHHHHHHCCCceeEEEe
Q 018116 329 DEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~ 348 (360)
.++..++|+++||+.++++.
T Consensus 211 ~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 211 VETHKARLHKAGFEHSELWF 230 (247)
T ss_pred HHHHHHHHHHcCchhHHHHH
Confidence 99999999999998765543
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.74 E-value=1.9e-16 Score=142.11 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=118.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCC--CccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQ-YIP--PADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~-~~p--~~D~i~ 258 (360)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.|++.+++ .++++++.+|+.+ +++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999999875 5679999999 999987752 3479999999977 655 499999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh---hhcccC------------
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL---MSVSVD------------ 323 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---~~~~~~------------ 323 (360)
+.+++|++++. .++|++++++|+| ||++++.|...++........ ....... .....+
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999999875 5789999999999 999999998866532211000 0000000 000000
Q ss_pred CcccCHHHHHHHHHHCCCceeEEEeeCCc-eeEEEEe
Q 018116 324 GKERTDEEWKTLFLDAGFTHYKITNVFGL-KSLIEVY 359 (360)
Q Consensus 324 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~ 359 (360)
....+.+++.++++++||+.++.....++ ..+..++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 13459999999999999999998888654 4455543
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=1.1e-17 Score=146.86 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=81.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
..++.+|||||||+|.++..++++. |+.+++++|+ +.|++.+++ ..+|+++++|+.+ |++ .||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999875 6789999999 999998874 3589999999987 666 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh--hc-ccCC-------------c
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM--SV-SVDG-------------K 325 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~-~~~g-------------~ 325 (360)
.+|+++|. .+.|++++|+|+| ||+++|+|...+...... .....++...+ .. ...+ .
T Consensus 125 glrn~~d~--~~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKP---GGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEE---EEEEEEEEEEB-SSHHHH--HHHHH-----------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCC---CeEEEEeeccCCCCchhh--ceeeeeeccccccccccccccccccccccccccc
Confidence 99999985 4689999999999 999999999887753211 00001111000 00 0011 1
Q ss_pred ccCHHHHHHHHHHCCCceeEEEeeCCc-eeEEEEe
Q 018116 326 ERTDEEWKTLFLDAGFTHYKITNVFGL-KSLIEVY 359 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~ 359 (360)
..+.+++.++++++||+.++..++.++ .++..++
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccC
Confidence 237899999999999999998888554 3344444
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.72 E-value=1.8e-16 Score=140.08 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=122.4
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--P 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~ 253 (360)
++..+. ..+..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .
T Consensus 37 ~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 37 TMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 444444 5667899999999999999999886 6789999999 888876653 3589999999876 444 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhH-hhhhhh--------------
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL-LGDTLM-------------- 318 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~d~~~-------------- 318 (360)
||+|++..++|++++. .++|+++.++|+| ||++++.+...++.... ..... .+...+
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQPTIPGF---KQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCCCChHH---HHHHHHHHcChhHHhhHHhcCCHHHH
Confidence 9999999999998875 4789999999999 99999988765443211 00000 000000
Q ss_pred --hcccCCcccCHHHHHHHHHHCCCceeEEEeeC-CceeEEEEeC
Q 018116 319 --SVSVDGKERTDEEWKTLFLDAGFTHYKITNVF-GLKSLIEVYP 360 (360)
Q Consensus 319 --~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 360 (360)
+........+.+++.++|+++||+++++.... +..++++++|
T Consensus 187 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 187 SWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00001123578999999999999999998886 6677888876
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.70 E-value=7.7e-16 Score=143.32 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=111.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 789999999 888876653 3689999999977 554 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch-hhh-hHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH-QVT-EAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~~-~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
+||+++. .+++++++++|+| ||++++.+.......... ... ......+........-...+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 9999875 5789999999999 999999887643321110 000 00011111000000112348999999999999
Q ss_pred CceeEEEeeC
Q 018116 341 FTHYKITNVF 350 (360)
Q Consensus 341 f~~~~~~~~~ 350 (360)
|..+++.++.
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999988764
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=7e-16 Score=138.34 Aligned_cols=155 Identities=18% Similarity=0.250 Sum_probs=110.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC--CCCccEEEe
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY--IPPADAYFF 259 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~--~p~~D~i~~ 259 (360)
..+++.++ ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+. .+.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 44566665 56779999999999999999999999999999999 999998874 4689999998652 236999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhH----hhhhh--hhcccCCcccCHHHHH
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL----LGDTL--MSVSVDGKERTDEEWK 333 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~----~~d~~--~~~~~~g~~~t~~e~~ 333 (360)
+.++||+++. .+++++++++|+| ||++++........ .......... +.... +....+....+.+++.
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 169 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAP---GSWIAVQVPGNFDA-PSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYA 169 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEcCCCcCC-hhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHH
Confidence 9999999875 5789999999999 99988864321111 1100000000 00000 0000122345899999
Q ss_pred HHHHHCCCceeEE
Q 018116 334 TLFLDAGFTHYKI 346 (360)
Q Consensus 334 ~ll~~aGf~~~~~ 346 (360)
++|+++||.+...
T Consensus 170 ~~l~~aGf~v~~~ 182 (255)
T PRK14103 170 ELLTDAGCKVDAW 182 (255)
T ss_pred HHHHhCCCeEEEE
Confidence 9999999975443
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.65 E-value=9.3e-16 Score=119.64 Aligned_cols=98 Identities=21% Similarity=0.479 Sum_probs=83.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCC-CC-C-CCCccEEEecc-c
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDM-FQ-Y-IPPADAYFFKL-V 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~-~~-~-~p~~D~i~~~~-~ 262 (360)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|+ .. + .+.||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 367999999999999999999999999999999 989887663 68999999999 33 2 33699999999 6
Q ss_pred cccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGD-EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+|++.. ++..++|+++++.|+| ||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 665543 5778999999999999 89888865
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.65 E-value=1.7e-14 Score=127.91 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=120.9
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-- 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-- 252 (360)
++..+. ..+..+|||||||+|.++..+++.+| ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+
T Consensus 43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 344444 34568999999999999999999987 789999999 888776653 3578999999876 332
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh-----hcccC----
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM-----SVSVD---- 323 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~---- 323 (360)
.||+|++.+++|++++. ..+|+++.++|+| ||.+++.+...+...... .....+...+ ....+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAEA 192 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcHH
Confidence 59999999999998874 5789999999999 999999988765432110 0000000000 00000
Q ss_pred --------CcccCHHHHHHHHHHCCCceeEEEeeC-CceeEEEEeC
Q 018116 324 --------GKERTDEEWKTLFLDAGFTHYKITNVF-GLKSLIEVYP 360 (360)
Q Consensus 324 --------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 360 (360)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 193 YSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123478899999999999999999874 5667887765
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.64 E-value=3.6e-15 Score=137.06 Aligned_cols=141 Identities=26% Similarity=0.317 Sum_probs=110.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEEEeccccccC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAF 266 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~ 266 (360)
.+..+|||||||+|.++..+++.++..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999988889999999 888887764 4678999999876 444 49999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
++.+ ++|++++++|+| ||++++.+...+... ......+..+ ...+.+++.++|+++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~------~~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFW------LSRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchh------HHHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 9864 689999999999 999998876543210 0001112111 1348899999999999999998
Q ss_pred EeeCC
Q 018116 347 TNVFG 351 (360)
Q Consensus 347 ~~~~~ 351 (360)
..+..
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 87643
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.64 E-value=4.5e-15 Score=144.99 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=116.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--Cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~ 254 (360)
.+++.+. ..+..+|||||||+|..+..+++.+ +++++++|+ +.+++.+++ ..+++|..+|+.. ++| .|
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 3445554 4667899999999999999999876 789999999 888887653 4589999999987 454 49
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..+++|+++. .++|++++++|+| ||++++.+.......... ..... .. ..+...++..++.+
T Consensus 334 D~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~---~~--~~g~~~~~~~~~~~ 400 (475)
T PLN02336 334 DVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEY---IK--QRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHH---HH--hcCCCCCCHHHHHH
Confidence 999999999999875 4789999999999 999999998765433221 11111 10 12345678999999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+++++||.++.+...
T Consensus 401 ~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 401 MLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHCCCeeeeeecc
Confidence 999999999877654
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.64 E-value=4.8e-15 Score=136.63 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=109.2
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CCC-Cc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-------QTENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~ri~~~~~D~~~-~~p-~~ 254 (360)
++..++ ...+.+|||||||+|.++..++...+. +++++|. +.++..++ ...+++++.+|+.+ +.+ .|
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344444 335689999999999999999998654 5999998 65554321 14589999999876 444 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++||..+. ..+|+++++.|+| ||.+++.+.+.+...... ......+.. +.. .-..++.+++..
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~--~~~--~~~lps~~~l~~ 260 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK--MRN--VYFIPSVPALKN 260 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc--Ccc--ceeCCCHHHHHH
Confidence 999999999998875 4789999999999 999988776665443221 000011111 110 012458999999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+++++||+.+++...
T Consensus 261 ~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 261 WLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHcCCceEEEEeC
Confidence 999999999988765
No 18
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.63 E-value=2e-15 Score=135.52 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=110.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~ 254 (360)
+.++++++ ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|..+-.+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45666676 8899999999999999999999998 899999999 776665542 578999999986633489
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-hhhcccCCcccCHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-LMSVSVDGKERTDEEWK 333 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~g~~~t~~e~~ 333 (360)
|.|++..++.|+..+....+++++.++|+| ||++++............ ......++ ......+|...+.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~~ 202 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEIL 202 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHHH
Confidence 999999999999988889999999999999 999988777765532211 00000011 12223467788999999
Q ss_pred HHHHHCCCceeEEEee
Q 018116 334 TLFLDAGFTHYKITNV 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
..++++||++..+...
T Consensus 203 ~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHTT-EEEEEEE-
T ss_pred HHHhcCCEEEEEEEEc
Confidence 9999999999888765
No 19
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.63 E-value=4.9e-15 Score=130.32 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=107.5
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEeccccccC
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAF 266 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~ 266 (360)
++|||||||+|.++..+++.+|+++++++|+ +.+++.+++ .++++++..|+.. +.+ .||+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 888776653 4689999999865 444 59999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
++. ..+|++++++|+| ||++++.+...+...... . + .......+..+|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~------~--~-----~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE------H--E-----ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc------c--c-----ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 774 5889999999999 999999887543211100 0 0 00112458899999999999999988
Q ss_pred Eee
Q 018116 347 TNV 349 (360)
Q Consensus 347 ~~~ 349 (360)
..+
T Consensus 143 ~~~ 145 (224)
T smart00828 143 VDA 145 (224)
T ss_pred EEC
Confidence 776
No 20
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.63 E-value=1.6e-14 Score=126.69 Aligned_cols=160 Identities=15% Similarity=0.142 Sum_probs=118.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
..+..+|||+|||+|.++..+++.+|. .+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 346789999999999999999999986 79999999 787776653 3579999999877 333 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccC-----------------Ccc
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVD-----------------GKE 326 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------g~~ 326 (360)
|+.++. ..+|+++++.|+| ||++++.+...+...... .....+...+....+ ...
T Consensus 117 ~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (223)
T TIGR01934 117 RNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAF 188 (223)
T ss_pred CCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhC
Confidence 988764 5789999999999 999999988655432110 000000000000000 123
Q ss_pred cCHHHHHHHHHHCCCceeEEEeeCCc-eeEEEEeC
Q 018116 327 RTDEEWKTLFLDAGFTHYKITNVFGL-KSLIEVYP 360 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 360 (360)
.+..+|.++|+++||+.+++.++.+. ..+++++|
T Consensus 189 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 189 PSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 47889999999999999999999766 45667664
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=9.1e-15 Score=125.77 Aligned_cols=140 Identities=18% Similarity=0.202 Sum_probs=106.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP-P 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p-~ 253 (360)
+.+++.+. ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 44455555 445689999999999999999986 679999999 888887653 2458889999876 444 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++..++|++++++...++++++++|+| ||++++++....+....+ . ..-...+.+++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~------~---------~~~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT------V---------GFPFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC------C---------CCCCccCHHHHH
Confidence 9999999999999988889999999999999 999877765544321110 0 001234788999
Q ss_pred HHHHHCCCceeEE
Q 018116 334 TLFLDAGFTHYKI 346 (360)
Q Consensus 334 ~ll~~aGf~~~~~ 346 (360)
++++ ||+++..
T Consensus 158 ~~~~--~~~~~~~ 168 (197)
T PRK11207 158 RYYE--GWEMVKY 168 (197)
T ss_pred HHhC--CCeEEEe
Confidence 9987 8987765
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.62 E-value=8.7e-15 Score=133.48 Aligned_cols=152 Identities=16% Similarity=0.094 Sum_probs=108.1
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-C-CCCc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-------QTENLKYIAGDMFQ-Y-IPPA 254 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~ri~~~~~D~~~-~-~p~~ 254 (360)
++..+. ...+.+|||||||+|.++..++...+. +++++|. +.++..+. ...++.+...++.+ + ...|
T Consensus 113 ~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 113 VLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 444444 345689999999999999999887553 7999998 66654321 24678888888765 3 2369
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++||++++ ..+|++++++|+| ||.|++.+.+.+...... ........ .|.. .....+.+++..
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~--k~~n--v~flpS~~~L~~ 259 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYA--KMKN--VYFIPSVSALKN 259 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHH--hccc--cccCCCHHHHHH
Confidence 999999999999876 4689999999999 999999887665432110 00000110 1110 012358999999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+++++||+.+++...
T Consensus 260 ~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 260 WLEKVGFENFRILDV 274 (314)
T ss_pred HHHHCCCeEEEEEec
Confidence 999999999988765
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=3.1e-15 Score=137.00 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=106.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
++.+|||||||+|.++..+++ ++.+++++|. +.+++.++. ..+++++++|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 457999999999999998886 4789999999 899887763 2479999999865 333 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh-hcccC----CcccCHHHHHHHHHH
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM-SVSVD----GKERTDEEWKTLFLD 338 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~----g~~~t~~e~~~ll~~ 338 (360)
||++++. .+|++++++|+| ||.+++.+....... +........... +...+ .+..+.+++.+++++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~----~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRA----YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHH----HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence 9999864 789999999999 999998875332110 000000000011 11111 245699999999999
Q ss_pred CCCceeEEEee
Q 018116 339 AGFTHYKITNV 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
+||+++++..+
T Consensus 280 aGf~i~~~~G~ 290 (322)
T PLN02396 280 ASVDVKEMAGF 290 (322)
T ss_pred cCCeEEEEeee
Confidence 99999988665
No 24
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=6.9e-15 Score=130.08 Aligned_cols=155 Identities=18% Similarity=0.235 Sum_probs=126.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~ 254 (360)
..+++++. +.++.+|||||||.|.+++..++++ +++++|+++ +++.+.+++ .+++++...|..+..+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 55677777 8999999999999999999999999 999999999 777776653 568999999987644459
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|-|++..+++|+..+.-..+++++++.|+| ||++++.....+...... ...+. .-....+|..++..++..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i--~~yiFPgG~lPs~~~i~~ 209 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFI--DKYIFPGGELPSISEILE 209 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHH--HHhCCCCCcCCCHHHHHH
Confidence 999999999999998889999999999999 999999888877654310 01111 112235788889999999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
..+++||.+......
T Consensus 210 ~~~~~~~~v~~~~~~ 224 (283)
T COG2230 210 LASEAGFVVLDVESL 224 (283)
T ss_pred HHHhcCcEEehHhhh
Confidence 999999998876554
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.61 E-value=1.6e-14 Score=130.77 Aligned_cols=145 Identities=18% Similarity=0.302 Sum_probs=111.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
..++.+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .+++++..+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5678899999999999888777764 5678999999 899888764 3689999999876 544 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++|++++. .+++++++++|+| ||++++.+.......... ...+..++....+...+..+|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPEE------IRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCHH------HHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 99988765 4689999999999 999999998765432211 112222222223445688999999999999
Q ss_pred ceeEEEe
Q 018116 342 THYKITN 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9887644
No 26
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.61 E-value=4.7e-15 Score=123.25 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=97.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCCccEEEeccccccCCh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ---YIPPADAYFFKLVFHAFGD 268 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~---~~p~~D~i~~~~~lh~~~~ 268 (360)
..+..+|||||||+|.++..+.+. +.+++++|+ +.+++. ..+.....+... +...||+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 467889999999999999999666 349999999 888877 223333332222 2236999999999999997
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc--cCCcccCHHHHHHHHHHCCCceeE
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS--VDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
...+|+++++.|+| ||.+++.++........ ....+.+... .....++.++|+++++++||++++
T Consensus 94 --~~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKP---GGYLVISDPNRDDPSPR-------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEE---EEEEEEEEEBTTSHHHH-------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEEcCCcchhhh-------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 46889999999999 99999988876431110 1111111111 223567999999999999999875
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.59 E-value=6.8e-15 Score=121.38 Aligned_cols=137 Identities=26% Similarity=0.367 Sum_probs=101.2
Q ss_pred CCCCEEEEeCCCCchHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--C-CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIIS-EAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--I-PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~-p~~D~i~~~~ 261 (360)
.+..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.++. .++++|..+|+.+ + + ..||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 4578999999999 999988874 4589999999988 4 3 3699999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhH--hhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL--LGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~--~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
++|++++.. .+|+++.++|++ ||.+++.+.......... ...... ...+.+. ..+. ..++|..+|++|
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~a 151 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMNLYSEVWSMI--YIGN--DKEEWKYILEEA 151 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHHHHHHHHHHC--C-----CCCGHHHHHHHT
T ss_pred chhhccCHH--HHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHHHHHHHhhhh--hccc--CHHHHHHHHHhc
Confidence 999999864 779999999999 899999888732211110 101001 1111111 1112 778999999999
Q ss_pred C
Q 018116 340 G 340 (360)
Q Consensus 340 G 340 (360)
|
T Consensus 152 g 152 (152)
T PF13847_consen 152 G 152 (152)
T ss_dssp T
T ss_pred C
Confidence 8
No 28
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.59 E-value=3.5e-14 Score=124.42 Aligned_cols=183 Identities=14% Similarity=0.086 Sum_probs=117.7
Q ss_pred hhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 018116 156 YWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANM 234 (360)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 234 (360)
.|+.++.++.....+...|..........+++.+.....+..+|||||||+|.++..+++. +.+++++|+ +.+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 4555555444444444433322222223333333311235789999999999999999876 568999999 8998877
Q ss_pred CC-------CCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhh
Q 018116 235 PQ-------TENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQV 307 (360)
Q Consensus 235 ~~-------~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 307 (360)
++ .+++.|..+|+.+....||+|++..+++|++.++..++++++.+.+++ ++ ++.+. +.....
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~---~~-~i~~~---~~~~~~--- 163 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE---RV-IFTFA---PKTAWL--- 163 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC---CE-EEEEC---CCchHH---
Confidence 64 248999999987644679999999999999888788899999998876 43 33321 111110
Q ss_pred hhHhHhhhhhhhcc---cCCcccCHHHHHHHHHHCCCceeEEEeeCC
Q 018116 308 TEAKLLGDTLMSVS---VDGKERTDEEWKTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 308 ~~~~~~~d~~~~~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 351 (360)
.. .....-..... ..-..++.+++.++++++||+++.......
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 164 AF-LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred HH-HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 00 00101000000 111245899999999999999998876644
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=1.1e-14 Score=130.51 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=107.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CCC--CccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--YIP--PADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~~p--~~D~i~~~~ 261 (360)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++++|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 679999999 899988764 3678999999865 222 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh-----cccCCcccCHHHHHHHH
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS-----VSVDGKERTDEEWKTLF 336 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~g~~~t~~e~~~ll 336 (360)
++||++++ .++|++++++|+| ||.+++........................+. ........+.+++.+++
T Consensus 121 vl~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 99999876 4789999999999 99998875443211000000000000000000 00012235789999999
Q ss_pred HHCCCceeEEEeeCCce
Q 018116 337 LDAGFTHYKITNVFGLK 353 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~~ 353 (360)
+++||+++....+....
T Consensus 196 ~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 196 EEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHCCCeEeeeeeEEEEe
Confidence 99999998877664433
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=7e-14 Score=125.67 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=108.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCC--CCccEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYI--PPADAYF 258 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~--p~~D~i~ 258 (360)
..++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+.. ..||+|+
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 45566665 56788999999999999999999999999999999 999988875 567999999987632 3699999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhh------hh--hhcc--cCCcccC
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGD------TL--MSVS--VDGKERT 328 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d------~~--~~~~--~~g~~~t 328 (360)
++.++|++++. .++|++++++|+| ||.+++.- +.....+ ....... +. +... ......+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~~---~~~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 167 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQM---PDNLDEP---SHVLMREVAENGPWEQNLPDRGARRAPLPP 167 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCC---CcEEEEEC---CCCCCCH---HHHHHHHHHccCchHHHhccccccCcCCCC
Confidence 99999998875 5789999999999 89888752 1111111 0000000 00 0000 0123357
Q ss_pred HHHHHHHHHHCCCce
Q 018116 329 DEEWKTLFLDAGFTH 343 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~ 343 (360)
..++.+++.++|+.+
T Consensus 168 ~~~~~~~l~~~g~~v 182 (258)
T PRK01683 168 PHAYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHHHhCCCce
Confidence 789999999999864
No 31
>PRK08317 hypothetical protein; Provisional
Probab=99.57 E-value=8.5e-14 Score=123.44 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=110.8
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--Cc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~ 254 (360)
+++.+. ..+..+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++ ..++++...|+.. +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344444 6678899999999999999999988 7889999999 887776643 4679999999876 443 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch-hhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH-QVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
|+|++.++++|+++. ..++++++++|+| ||.+++.+.......... ............. .......+..+|.
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 161 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DHFADPWLGRRLP 161 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHH--hcCCCCcHHHHHH
Confidence 999999999999875 5689999999999 999999885432211000 0000001111111 1112334567899
Q ss_pred HHHHHCCCceeEEEee
Q 018116 334 TLFLDAGFTHYKITNV 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
++++++||..+++...
T Consensus 162 ~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 162 GLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHcCCCceeEEEE
Confidence 9999999997766443
No 32
>PRK06922 hypothetical protein; Provisional
Probab=99.57 E-value=3.3e-14 Score=138.44 Aligned_cols=143 Identities=19% Similarity=0.292 Sum_probs=110.5
Q ss_pred CChhHHhhcCCcHHHHHHHHhhhCcchh--HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHH
Q 018116 154 KNYWDYMNQNPGLSQRFNQAMISDSEMA--IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHA 230 (360)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 230 (360)
..+|+++..+++...+|...|....... .......++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 4688999888888787776554432211 111222334 44678999999999999999999999999999999 888
Q ss_pred HhcCCC-----CCCeEEEeCCCCC-C--CC--CccEEEeccccccC-----------ChhHHHHHHHHHHHhccCCCCCc
Q 018116 231 VANMPQ-----TENLKYIAGDMFQ-Y--IP--PADAYFFKLVFHAF-----------GDEDCLKILKKCREAIAGNGERG 289 (360)
Q Consensus 231 ~~~a~~-----~~ri~~~~~D~~~-~--~p--~~D~i~~~~~lh~~-----------~~~~~~~~L~~~~~~L~p~~~gG 289 (360)
++.+++ ..+++++++|+.+ + ++ .||+|+++.++|+| ++++..++|++++++|+| ||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence 887763 3568889999865 3 33 59999999999986 346778999999999999 99
Q ss_pred EEEEEeeecCCC
Q 018116 290 KVLIMDIVINEK 301 (360)
Q Consensus 290 ~lli~e~~~~~~ 301 (360)
++++.|.+.++.
T Consensus 532 rLII~D~v~~E~ 543 (677)
T PRK06922 532 RIIIRDGIMTED 543 (677)
T ss_pred EEEEEeCccCCc
Confidence 999999876643
No 33
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.57 E-value=1.5e-13 Score=117.42 Aligned_cols=146 Identities=23% Similarity=0.298 Sum_probs=109.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCC--Cc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG------IKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~-~~p--~~ 254 (360)
....++|||+||||..+..+++.-+. .+++++|+ |+|+..+++ ..++.++++|..+ |+| .|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34579999999999999999998776 78999999 999987653 4569999999988 787 49
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh---------------hh
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL---------------MS 319 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---------------~~ 319 (360)
|.|++.+-+.++++.+ +.|++++|+||| ||++.+.|..--++.....+. ....++.. .+
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~fy-~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEPLKWFY-DQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHHHHHHH-HhhhhhhhchhhHhhhhhHhhhhhH
Confidence 9999999999999864 779999999999 999999887654432211110 00111110 00
Q ss_pred cccCCcccCHHHHHHHHHHCCCceeE
Q 018116 320 VSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 320 ~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+.-=-+..+.+++..+.+++||+.+.
T Consensus 253 veSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 00001344889999999999999887
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=1.2e-13 Score=118.63 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=103.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D 255 (360)
.+++.+. ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ .-++.+...|+.. +.+ .||
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 4444444 445679999999999999999986 679999999 888887653 2247777788754 333 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+|++..++|++++++...++++++++|+| ||++++++....+..... .. .....+.+++.++
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~--------~~-------~~~~~~~~el~~~ 158 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCH--------MP-------FSFTFKEDELRQY 158 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCC--------CC-------cCccCCHHHHHHH
Confidence 99999999999888888999999999999 999888776543321110 00 0123588999998
Q ss_pred HHHCCCceeEEE
Q 018116 336 FLDAGFTHYKIT 347 (360)
Q Consensus 336 l~~aGf~~~~~~ 347 (360)
|+ +|+++...
T Consensus 159 f~--~~~~~~~~ 168 (195)
T TIGR00477 159 YA--DWELLKYN 168 (195)
T ss_pred hC--CCeEEEee
Confidence 86 58777665
No 35
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.53 E-value=1.4e-13 Score=116.10 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=119.8
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC----C--CCCe-EEEeCCCCCC---CC--------CccEEE
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP----Q--TENL-KYIAGDMFQY---IP--------PADAYF 258 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~ri-~~~~~D~~~~---~p--------~~D~i~ 258 (360)
+|||||+|||..+..+++.+|++...-.|. +.....+. + .+++ .-+..|+.++ ++ .||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999999999999988888 44432222 1 1222 2234455442 21 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc-CCcccCHHHHHHHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV-DGKERTDEEWKTLFL 337 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~t~~e~~~ll~ 337 (360)
+.+++|-.+-+.+..+++.+.++|+| ||.|++.-++..+..... +....+|....... ....|..+++.++.+
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~ 181 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALAA 181 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHHH
Confidence 99999999999999999999999999 999999998877653321 23345665554432 345789999999999
Q ss_pred HCCCceeEEEeeCCceeEEEEeC
Q 018116 338 DAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 338 ~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
++||+..+.+.+|-+.-+++++|
T Consensus 182 ~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 182 AHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HCCCccCcccccCCCCeEEEEeC
Confidence 99999999999988877777765
No 36
>PRK06202 hypothetical protein; Provisional
Probab=99.53 E-value=2.2e-13 Score=120.37 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=101.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CC-C-CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YI-P-PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~-p-~~D~i~~~~~ 262 (360)
.+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++ ..++++...+... +. + .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46689999999999999888764 35679999999 999988765 3456676665433 22 2 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh---hcccC-----CcccCHHHHHH
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM---SVSVD-----GKERTDEEWKT 334 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~---~~~~~-----g~~~t~~e~~~ 334 (360)
+||+++++..++|++++++++ |.+++.+...+..... .......... ..... -+.++.+++.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYA----LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHH----HHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 999999888899999999875 5666766655421100 0000000000 00011 13569999999
Q ss_pred HHHHCCCceeEEEeeC
Q 018116 335 LFLDAGFTHYKITNVF 350 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~ 350 (360)
++++ ||++...++..
T Consensus 210 ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 210 LAPQ-GWRVERQWPFR 224 (232)
T ss_pred HhhC-CCeEEecccee
Confidence 9999 99988776653
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.53 E-value=9.7e-14 Score=115.75 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=121.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CccEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYIP--PADAYF 258 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~p--~~D~i~ 258 (360)
..++...+ .....+|+|+|||+|.....|++++|...++|+|. +.|++.|+. ..+++|..+|+.+-.| ..|+++
T Consensus 20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 45667777 77889999999999999999999999999999999 999999875 7899999999987444 799999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhh---hHhH--hhhhhhhc--ccCCcccCHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT---EAKL--LGDTLMSV--SVDGKERTDEE 331 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~---~~~~--~~d~~~~~--~~~g~~~t~~e 331 (360)
++-+||.++|. .++|.++...|.| ||.|-+-=+ ++...+... +... -+.-.+.. .......+...
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQmP---dN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQMP---DNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCC---CceEEEECC---CccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 99999999986 5789999999999 898877432 222221110 0000 01111110 01223458999
Q ss_pred HHHHHHHCCCceeEE-----EeeCCceeEEEEeC
Q 018116 332 WKTLFLDAGFTHYKI-----TNVFGLKSLIEVYP 360 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~-----~~~~~~~~vi~~~~ 360 (360)
|.++|...+-++.-. +++++...++++.|
T Consensus 170 Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 170 YYELLAPLACRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHhCcccceeeeeeeeccccCCCccchhhhee
Confidence 999999887654332 33356666776654
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.52 E-value=3.6e-14 Score=106.81 Aligned_cols=88 Identities=23% Similarity=0.425 Sum_probs=75.3
Q ss_pred EEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHH
Q 018116 200 VDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 200 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~ 272 (360)
||+|||+|..+..+++. +..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++||++ +..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CHH
Confidence 79999999999999998 8999999999 888887764 5677899999887 655 499999999999994 457
Q ss_pred HHHHHHHHhccCCCCCcEEEE
Q 018116 273 KILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 273 ~~L~~~~~~L~p~~~gG~lli 293 (360)
+++++++|+|+| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 899999999999 898875
No 39
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.51 E-value=5e-13 Score=119.97 Aligned_cols=99 Identities=19% Similarity=0.325 Sum_probs=83.1
Q ss_pred CCCCEEEEeCCCCch----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC--------------------------
Q 018116 194 EGLGSIVDVGGGNGG----FSKIISEAFP-----GIKCTVLDL-PHAVANMPQT-------------------------- 237 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 237 (360)
.+..+|+|+|||+|. +++.+++.++ +.+++++|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5666666654 578999999 9999887751
Q ss_pred -------CCeEEEeCCCCCC-CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 238 -------ENLKYIAGDMFQY-IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 238 -------~ri~~~~~D~~~~-~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+|+|..+|+.++ .+ .||+|++.+++||+++++..+++++++++|+| ||.|++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 3799999999883 32 59999999999999998888999999999999 99988844
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.50 E-value=8.3e-15 Score=111.66 Aligned_cols=87 Identities=23% Similarity=0.447 Sum_probs=59.0
Q ss_pred EEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CeEEEeCCCCCCC-C-CccEEEeccccccCC
Q 018116 200 VDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TE---NLKYIAGDMFQYI-P-PADAYFFKLVFHAFG 267 (360)
Q Consensus 200 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---ri~~~~~D~~~~~-p-~~D~i~~~~~lh~~~ 267 (360)
||||||+|.++..+++.+|..+++++|+ +.+++.+++ .. ++++...|..... + .||+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 999988775 12 3444444544432 2 699999999999994
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEE
Q 018116 268 DEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
+ ...+|+++++.|+| ||.|
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 56899999999999 8875
No 41
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=1e-12 Score=117.60 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=103.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAY 257 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i 257 (360)
..+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++ ...+.++.+|+.. +++ .||+|
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44455554 345689999999999999888764 679999999 999988875 3446788999876 544 59999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHH
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFL 337 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~ 337 (360)
+++.++|+.++. ..+|++++++|+| ||.+++.......... . ...+..+. .........+.++|.+++.
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~e---l--~~~~~~~~-~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSLPE---L--HQAWQAVD-ERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCchHH---H--HHHHHHhc-cCCccccCCCHHHHHHHHH
Confidence 999999977764 5789999999999 9999987665432110 1 01111110 0011234568999999999
Q ss_pred HCCCce
Q 018116 338 DAGFTH 343 (360)
Q Consensus 338 ~aGf~~ 343 (360)
+.|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 988863
No 42
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.49 E-value=5.3e-14 Score=120.25 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=106.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CC--CCccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YI--PPADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~--p~~D~i~~~~~lh 264 (360)
-.+.+|||||||.|.++..+++. +.+++++|. +..++.|+. .-.+++.+...++ .. ..||+|+|..+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 36789999999999999999998 699999999 899998874 2335577766655 22 4699999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccC-----CcccCHHHHHHHHHHC
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVD-----GKERTDEEWKTLFLDA 339 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----g~~~t~~e~~~ll~~a 339 (360)
|.++++ .+++.+.+.++| ||.+++........... ............... .+...++|+..++.++
T Consensus 136 Hv~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka~~----~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243)
T COG2227 136 HVPDPE--SFLRACAKLVKP---GGILFLSTINRTLKAYL----LAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243)
T ss_pred ccCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHHHH----HHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccC
Confidence 999986 489999999999 99999877664332111 000011111111111 2445789999999999
Q ss_pred CCceeEEEee
Q 018116 340 GFTHYKITNV 349 (360)
Q Consensus 340 Gf~~~~~~~~ 349 (360)
|+.+.....+
T Consensus 207 ~~~~~~~~g~ 216 (243)
T COG2227 207 NLKIIDRKGL 216 (243)
T ss_pred CceEEeecce
Confidence 9998887665
No 43
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.49 E-value=7.2e-13 Score=116.98 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=101.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~~~~lh~ 265 (360)
.+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .+++++..+|+......||+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456899999999999999999874 56999999 888887764 25899999995433346999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc--ccCCcccCHHHHHHHHHHCCCce
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV--SVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
+++++...+++++.+.+++ +.++... +..... ............. .......+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~---~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFA---PYTPLL---ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEEC---CccHHH---HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9999888999999987643 4443322 111100 0000000000000 01123458899999999999999
Q ss_pred eEEEeeCC
Q 018116 344 YKITNVFG 351 (360)
Q Consensus 344 ~~~~~~~~ 351 (360)
.++.....
T Consensus 210 ~~~~~~~~ 217 (230)
T PRK07580 210 VRTERISS 217 (230)
T ss_pred Eeeeeccc
Confidence 99887744
No 44
>PRK05785 hypothetical protein; Provisional
Probab=99.49 E-value=1.3e-12 Score=114.70 Aligned_cols=153 Identities=11% Similarity=0.045 Sum_probs=104.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDED 270 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~ 270 (360)
+..+|||||||+|.++..+++.+ +.+++++|. ++|++.++.. ..++.+|+.. |++ .||+|++..++||+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46899999999999999999887 679999999 9999998753 3467788876 555 49999999999998875
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh--hhc-ccCC-------------cccCHHHHHH
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL--MSV-SVDG-------------KERTDEEWKT 334 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~-~~~g-------------~~~t~~e~~~ 334 (360)
.+.|++++++|+| . +.+++...++......+ ...+.... ... ..++ ...+.+++.+
T Consensus 127 -~~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~~--~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 127 -EKVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRKY--LSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred -HHHHHHHHHHhcC---c--eEEEEeCCCCcHHHHHH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 4689999999998 4 33445443332111000 00000000 000 0111 2237899999
Q ss_pred HHHHCCCceeEEEeeCCc-eeEEEEeC
Q 018116 335 LFLDAGFTHYKITNVFGL-KSLIEVYP 360 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~~-~~vi~~~~ 360 (360)
+++++| ..++...+.++ ..+..++|
T Consensus 199 ~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 199 IFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHh-CceEEEEccccEEEEEEEee
Confidence 999984 76788887555 44555543
No 45
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.48 E-value=3.9e-13 Score=115.92 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=89.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--CccEEEeccccccCCh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~~~~ 268 (360)
..+..+|||||||+|..+..+++..|+.+++++|+ +.+++.+++ ..++++..+|+.++.+ .||+|++..++||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34677999999999999999999889999999999 999999876 5678899999887554 5999999999999998
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
++..++++++.+++ ++.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~-----~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS-----NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc-----CcEEEEEEeeCCC
Confidence 88889999999986 3688888886554
No 46
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.48 E-value=8.1e-13 Score=117.19 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=103.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC--CccEEEeccccccCCh
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~ 268 (360)
...+|||||||+|.++..+++.+|..+++++|. +.+++.++. .++++++.+|+.. +.+ .||+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357999999999999999999999999999999 888776654 3588999999876 433 5999999999998876
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEE
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
. .++|++++++|+| ||.+++.+....... ....... .......+.++|.++++++ |+...+.
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFGPGTLH------ELRQSFG-----QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCCccCHH------HHHHHHH-----HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 5789999999999 999998765432211 1001110 0123456889999999988 8766543
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.48 E-value=8.2e-13 Score=124.54 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=112.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCCCccEEEe
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQYIPPADAYFF 259 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~~~p~~D~i~~ 259 (360)
.+++.++ ..++.+|||||||+|.++..+++.+ +++++++|+ +.+++.+++ ...+++...|.......||.|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 3445555 6678899999999999999999876 679999999 888887764 33578888887543346999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
..+++|.++.....++++++++|+| ||.+++.+...+...... ..+.+- ....+|...+.+++...++ .
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~--yifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINK--YIFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCcee--eecCCCcCCCHHHHHHHHH-C
Confidence 9999999887778899999999999 999999876554322110 011111 1223566778888888766 5
Q ss_pred CCceeEEEee
Q 018116 340 GFTHYKITNV 349 (360)
Q Consensus 340 Gf~~~~~~~~ 349 (360)
||.+.++..+
T Consensus 304 ~~~v~d~~~~ 313 (383)
T PRK11705 304 LFVMEDWHNF 313 (383)
T ss_pred CcEEEEEecC
Confidence 8988877655
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=6.9e-13 Score=129.63 Aligned_cols=143 Identities=13% Similarity=0.184 Sum_probs=110.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC---CCC--
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ---YIP-- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~---~~p-- 252 (360)
..+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. .+++.++.+|+.. +++
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 34445454 4456799999999999999999874 48999999 888876642 4679999999864 344
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++..++||+++++..++|++++++|+| ||.+++.|.+........ .. ......++...|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHHH
Confidence 59999999999999998889999999999999 999999987754432110 00 011234578899
Q ss_pred HHHHHHCCCceeE
Q 018116 333 KTLFLDAGFTHYK 345 (360)
Q Consensus 333 ~~ll~~aGf~~~~ 345 (360)
.++|.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 9999999997553
No 49
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.47 E-value=5.5e-13 Score=110.40 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=115.1
Q ss_pred HHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCe
Q 018116 168 QRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENL 240 (360)
Q Consensus 168 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri 240 (360)
..|++.|.++..-+...+-.-.. .+....+|+||||+|..-. +-.--|.++++.+|. +.|.+.+.+ ...+
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~g--k~~K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLG--KSGKGDVLEVGCGTGANFK-FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhc--ccCccceEEecccCCCCcc-cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 34566666553322222221111 3456689999999997532 222237889999999 888776543 5567
Q ss_pred E-EEeCCCCC-C-CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhh
Q 018116 241 K-YIAGDMFQ-Y-IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGD 315 (360)
Q Consensus 241 ~-~~~~D~~~-~-~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d 315 (360)
. |+.++..+ + .+ +||+|++..+|+ +.++.++.|++++++|+| ||+++++|.+..+-.....+ .+...+
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC--Sve~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~i--~q~v~e 200 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLC--SVEDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNRI--LQQVAE 200 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEe--ccCCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHHH--HHHHhc
Confidence 6 88887766 3 34 599999999998 555568999999999999 99999999988765433211 111122
Q ss_pred hhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCCcee
Q 018116 316 TLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKS 354 (360)
Q Consensus 316 ~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 354 (360)
-.......|-..|.+-| +++++|-|+..+......+..
T Consensus 201 p~~~~~~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~tt 238 (252)
T KOG4300|consen 201 PLWHLESDGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTT 238 (252)
T ss_pred hhhheeccceEEehhHH-HHhhhcccccchhhcccCCce
Confidence 11111234555677666 667889999888877755443
No 50
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.46 E-value=1e-12 Score=119.70 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=101.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~ 265 (360)
.+..+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++...|+.. ..+ .||+|++..++|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999885 689999999 888876653 3368888888866 334 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+++++...+++++.++|+| ||.++++.....+....+ .. ....++.++++++++. |+++.
T Consensus 197 l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~p-------~~~~~~~~el~~~~~~--~~i~~ 256 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------MP-------FSFTFKEGELKDYYQD--WEIVK 256 (287)
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------CC-------CCcccCHHHHHHHhCC--CEEEE
Confidence 9988889999999999999 999887665443321110 00 0123578999999964 88877
Q ss_pred EE
Q 018116 346 IT 347 (360)
Q Consensus 346 ~~ 347 (360)
..
T Consensus 257 ~~ 258 (287)
T PRK12335 257 YN 258 (287)
T ss_pred Ee
Confidence 63
No 51
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.46 E-value=9.5e-14 Score=119.45 Aligned_cols=143 Identities=19% Similarity=0.179 Sum_probs=108.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEeCCCCCCCCCccEEEeccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TE----NLKYIAGDMFQYIPPADAYFFKLV 262 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----ri~~~~~D~~~~~p~~D~i~~~~~ 262 (360)
+.+|||||||+|.+++.|++. +..++|+|. +.+++.|+. .. |++|.+.|.....+.||.|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 478999999999999999998 689999999 889888763 22 578888888766667999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc-----CCcccCHHHHHHHHH
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV-----DGKERTDEEWKTLFL 337 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~g~~~t~~e~~~ll~ 337 (360)
++|..|+ ..+++.+.+.|+| ||+++|.+....-.... ......+....... ..+..++++...+++
T Consensus 168 leHV~dp--~~~l~~l~~~lkP---~G~lfittinrt~lS~~----~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~ 238 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTINRTILSFA----GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILN 238 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC---CCceEeeehhhhHHHhh----ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHH
Confidence 9999876 4789999999999 99999988655432211 11112222222221 234568999999999
Q ss_pred HCCCceeEEEee
Q 018116 338 DAGFTHYKITNV 349 (360)
Q Consensus 338 ~aGf~~~~~~~~ 349 (360)
.+|+.+..+...
T Consensus 239 ~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 239 ANGAQVNDVVGE 250 (282)
T ss_pred hcCcchhhhhcc
Confidence 999988776544
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=3e-12 Score=108.54 Aligned_cols=134 Identities=15% Similarity=0.202 Sum_probs=105.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC-CCccEEEeccccccC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI-PPADAYFFKLVFHAF 266 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~-p~~D~i~~~~~lh~~ 266 (360)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+.. +.||+|+++..+|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999866 8999999 888887764 346888999987633 369999999888766
Q ss_pred Chh-------------------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 267 GDE-------------------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 267 ~~~-------------------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
+++ ...++|+++.++|+| ||++++.+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~---------------------------- 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN---------------------------- 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence 542 135789999999999 999988763221
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
...++.+++++.||....+......+--+++||
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 246778999999999998888877777666664
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.45 E-value=1.9e-13 Score=104.52 Aligned_cols=88 Identities=18% Similarity=0.373 Sum_probs=73.9
Q ss_pred EEEeCCCCchHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--CCCccEEEec-ccccc
Q 018116 199 IVDVGGGNGGFSKIISEAF---PGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-Y--IPPADAYFFK-LVFHA 265 (360)
Q Consensus 199 iLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~--~p~~D~i~~~-~~lh~ 265 (360)
|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++ ..++++++.|+.+ + .+.||+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 999988764 3589999999977 3 2369999995 55999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCc
Q 018116 266 FGDEDCLKILKKCREAIAGNGERG 289 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG 289 (360)
+++++..++++++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 76
No 54
>PRK04266 fibrillarin; Provisional
Probab=99.44 E-value=6e-12 Score=109.97 Aligned_cols=140 Identities=10% Similarity=0.107 Sum_probs=98.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCeEEEeCCCCCC-----CC-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVA----NMPQTENLKYIAGDMFQY-----IP-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~ri~~~~~D~~~~-----~p-~~D~i~~~~ 261 (360)
..++.+|||+|||+|.++..+++..+..+++++|. +.+++ .++...++.++.+|...+ .+ .+|+|++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~-- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ-- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence 66788999999999999999999887678999999 87666 334356799999998652 12 4999873
Q ss_pred ccccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 262 VFHAFGDE-DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 262 ~lh~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
+.+++ +...+|+++++.|+| ||+++|.-...+-.... ...+..++..++++++|
T Consensus 148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~-------------------~~~~~~~~~~~~l~~aG 202 (226)
T PRK04266 148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTK-------------------DPKEIFKEEIRKLEEGG 202 (226)
T ss_pred ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcC-------------------CHHHHHHHHHHHHHHcC
Confidence 34433 334568999999999 99999842211100000 00011244459999999
Q ss_pred CceeEEEeeCCc---eeEEEEe
Q 018116 341 FTHYKITNVFGL---KSLIEVY 359 (360)
Q Consensus 341 f~~~~~~~~~~~---~~vi~~~ 359 (360)
|+.++...+..+ +.+++++
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEEE
Confidence 999999888544 6665554
No 55
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=3.2e-12 Score=109.12 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=94.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-~~D~i~~~~~lh 264 (360)
..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 45778999999999999999999999999999999 888877753 3579999998855444 599999876654
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
+ ...+++.+.+.|+| ||++++..... .+.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence 3 24578999999999 89887743211 134677788999999876
Q ss_pred EEEee
Q 018116 345 KITNV 349 (360)
Q Consensus 345 ~~~~~ 349 (360)
++...
T Consensus 153 ~~~~~ 157 (187)
T PRK08287 153 DCVQL 157 (187)
T ss_pred eEEEE
Confidence 65443
No 56
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.43 E-value=1.8e-12 Score=118.45 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=101.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCCCccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYIPPADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~p~~D~i~~~~~ 262 (360)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++|...|+......||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999986 679999999 889877653 13578888887543346999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh-c-ccCCcccCHHHHHHHHHHCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS-V-SVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~g~~~t~~e~~~ll~~aG 340 (360)
+||++++....+++.+.+ +.+ |+++|.. .+.... +............ . .......+.++++++++++|
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~---~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLY---YDILKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchH---HHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 999998877788888875 444 5555532 122110 0000011010000 0 00011237999999999999
Q ss_pred CceeEEEeeCCce---eEEEEeC
Q 018116 341 FTHYKITNVFGLK---SLIEVYP 360 (360)
Q Consensus 341 f~~~~~~~~~~~~---~vi~~~~ 360 (360)
|++.+.......+ .++|++|
T Consensus 292 f~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 292 WKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred CEEEEEEEeecceeHHhhhhhcc
Confidence 9988766554332 2555543
No 57
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.42 E-value=6.3e-12 Score=108.98 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=100.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-C---
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------------QTENLKYIAGDMFQ-Y--- 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~ri~~~~~D~~~-~--- 250 (360)
.+..+|||+|||.|..+..|+++ +.+++++|+ +.+++.+. +..+|++.++|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 889999999 88887641 13579999999988 3
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHH
Q 018116 251 IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDE 330 (360)
Q Consensus 251 ~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~ 330 (360)
.+.||.|+-..++||++.+.....++++.++|+| ||++++.....+...... .-...+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~g-----------------pp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAG-----------------PPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCC-----------------cCCCCCHH
Confidence 2359999999999999999999999999999999 898777766543211100 00134889
Q ss_pred HHHHHHHHCCCceeEEE
Q 018116 331 EWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~ 347 (360)
++.++|+. +|.+..+.
T Consensus 171 eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 171 EVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHhcC-CceEEEEe
Confidence 99998864 45554443
No 58
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.39 E-value=6.4e-12 Score=115.15 Aligned_cols=97 Identities=19% Similarity=0.349 Sum_probs=78.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CC-Cc-----cE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY--IP-PA-----DA 256 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~--~p-~~-----D~ 256 (360)
.+..+|||+|||+|..+..|+++++ ..+++++|+ ++|++.+.+ ..+|.++++|+.+. .+ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3567899999999999999999987 689999999 888876643 23567789999762 22 23 34
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+++..++++++++++..+|++++++|+| ||.++|
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 5556789999999999999999999999 888876
No 59
>PLN03075 nicotianamine synthase; Provisional
Probab=99.37 E-value=3.2e-12 Score=114.55 Aligned_cols=96 Identities=14% Similarity=0.266 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCchHH-HHHH-HHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC---CCccEEEe
Q 018116 194 EGLGSIVDVGGGNGGFS-KIIS-EAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQYI---PPADAYFF 259 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~-~~l~-~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~~---p~~D~i~~ 259 (360)
.++++|+|||||.|.++ +.++ +.+|+.+++++|. +.+++.|++ .++++|+.+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 47899999999988543 3333 4679999999999 888887663 478999999997732 36999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
. ++|+|..++..++|+++++.|+| ||.+++
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvl 231 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLML 231 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEE
Confidence 9 99999877778999999999999 888877
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=7.8e-12 Score=105.76 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=89.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C-CCCccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y-IPPADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~-~p~~D~i~~~~~lh~ 265 (360)
++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ . ...||+|++.. +++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 368999999999999999999999999999999 777765542 3579999999976 2 23699998865 543
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHH---CCCc
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLD---AGFT 342 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~---aGf~ 342 (360)
+ ..+++.+++.|+| ||++++... . ....++..+.++ .||+
T Consensus 121 ~-----~~~~~~~~~~Lkp---gG~lvi~~~---~--------------------------~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 121 L-----NVLLELTLNLLKV---GGYFLAYKG---K--------------------------KYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred H-----HHHHHHHHHhcCC---CCEEEEEcC---C--------------------------CcHHHHHHHHHhhhhcCce
Confidence 3 3468888999999 999887531 0 023344444444 7999
Q ss_pred eeEEEeeCCce
Q 018116 343 HYKITNVFGLK 353 (360)
Q Consensus 343 ~~~~~~~~~~~ 353 (360)
.+++.+...+.
T Consensus 164 ~~~~~~~~~~~ 174 (181)
T TIGR00138 164 PLEVPPLTGPD 174 (181)
T ss_pred EeeccccCCCc
Confidence 99888875543
No 61
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=4.9e-12 Score=106.61 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=96.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~ 254 (360)
..+++..+ ..+..++||+|||.|..+..|+++ +..|+++|. +..++.+.+ .-.|+....|+.+ .++ .|
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 34555555 456789999999999999999998 899999999 777776542 4458899999977 454 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++++++.+...++++++.+.++| ||.+++...+.....+.+ . .. ...+.+.|+.+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~~~d~p~~------~--~~-------~f~~~~~EL~~ 157 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFMETPDYPCP------S--PF-------PFLLKPGELRE 157 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB--SSS--S------S-----------S--B-TTHHHH
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecccCCCCCC------C--CC-------CcccCHHHHHH
Confidence 999999999999999999999999999999 888777655433221110 0 00 12335678888
Q ss_pred HHHHCCCceeEE
Q 018116 335 LFLDAGFTHYKI 346 (360)
Q Consensus 335 ll~~aGf~~~~~ 346 (360)
.++ ||.++..
T Consensus 158 ~y~--dW~il~y 167 (192)
T PF03848_consen 158 YYA--DWEILKY 167 (192)
T ss_dssp HTT--TSEEEEE
T ss_pred HhC--CCeEEEE
Confidence 885 6877654
No 62
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.36 E-value=8.8e-12 Score=110.54 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=103.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHh------cCC-CCCCeEEEeCCCCC-C-CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVA------NMP-QTENLKYIAGDMFQ-Y-IP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~------~a~-~~~ri~~~~~D~~~-~-~p 252 (360)
+.+...++ --.+++|||||||+|.++..++.+.+ -.++|+|. +...- ... ...++.+...-+.. + ..
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34455554 34678999999999999999999844 36899997 33222 211 12333444333322 2 23
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++..||+|..++ ...|+.+++.|+| ||.|++-..+.+...... +.+...+. .|.. --...|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~rYa--~m~n--v~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDRYA--KMRN--VWFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCccc--CCCc--eEEeCCHHHH
Confidence 59999999999998887 5789999999999 898888777777654321 11111111 1110 1234599999
Q ss_pred HHHHHHCCCceeEEEee
Q 018116 333 KTLFLDAGFTHYKITNV 349 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~ 349 (360)
..+++++||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999998776
No 63
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.36 E-value=2.7e-11 Score=102.76 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=91.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-CccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP-PADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh 264 (360)
+++.+|||||||+|..+..++++.|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .||+|++...
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3478999999999999999999999999999999 888877663 3459999999876 223 5999998652
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
. ....+++.+++.|+| ||++++.+... ...++.++.++.|+++.
T Consensus 122 --~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred --c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence 1 245789999999999 99998864210 23445666677799877
Q ss_pred EEEee
Q 018116 345 KITNV 349 (360)
Q Consensus 345 ~~~~~ 349 (360)
+++..
T Consensus 166 ~~~~~ 170 (187)
T PRK00107 166 EVIEL 170 (187)
T ss_pred eeEEE
Confidence 77655
No 64
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.36 E-value=2.1e-12 Score=107.61 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=96.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
.....+++|+|||.|.++..|+.++ -+++++|. +.+++.+++ .++|+++..|+....| .||+|+++.++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4566899999999999999999985 48999999 999988764 6899999999977555 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 266 FGD-EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 266 ~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
+++ ++...+++++.++|+| ||.|++.... +. ....+ |.....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~r-d~-----------~c~~w-------gh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHAR-DA-----------NCRRW-------GHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE--HH-----------HHHHT-------T-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEec-CC-----------ccccc-------CcccchHHHHHHHHHH-hhhe
Confidence 986 6788999999999999 8999886642 00 11111 3344678888898886 6666
Q ss_pred EEEee
Q 018116 345 KITNV 349 (360)
Q Consensus 345 ~~~~~ 349 (360)
+...+
T Consensus 176 ~~~~~ 180 (201)
T PF05401_consen 176 ERVEC 180 (201)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 66555
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.34 E-value=2e-11 Score=114.06 Aligned_cols=108 Identities=20% Similarity=0.300 Sum_probs=86.7
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQYIP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~~p 252 (360)
..+++.++ .....+|||+|||+|..+..+++++|..+++++|. +.+++.++. ..++++...|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34556665 33346999999999999999999999999999999 788887763 1378999999887543
Q ss_pred --CccEEEecccccc---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 --PADAYFFKLVFHA---FGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 --~~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||+|+++-.+|. ++++.+.++++.++++|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 6999999755553 4556677899999999999 99998874
No 66
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.34 E-value=3.4e-11 Score=104.84 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=100.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCCC----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------------QTENLKYIAGDMFQY---- 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~ri~~~~~D~~~~---- 250 (360)
.+..+|||+|||.|..+..|+++ +.+++++|+ +.+++.+. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 889999999 88777542 146799999999873
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHH
Q 018116 251 IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDE 330 (360)
Q Consensus 251 ~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~ 330 (360)
.+.||+|+-..++|+++.+...+.++++.++|+| ||+++++....++..... .-...+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~g-----------------Pp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAG-----------------PPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCC-----------------CCCCCCHH
Confidence 2369999999999999999999999999999999 887666555443221100 00134889
Q ss_pred HHHHHHHHCCCceeEEEe
Q 018116 331 EWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~ 348 (360)
++.++|.. +|.+..+..
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99999964 366555543
No 67
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.34 E-value=3.9e-12 Score=107.81 Aligned_cols=139 Identities=18% Similarity=0.266 Sum_probs=98.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC-eEEEeCCCCC--CCC-CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TEN-LKYIAGDMFQ--YIP-PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~r-i~~~~~D~~~--~~p-~~D~i~~~~~l 263 (360)
.+..+.||.|+|.|..+..++-.. --++-.+|. +..++.|++ ..+ .++.+.-+.+ |.+ .||+|++.+++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998876543 336788888 888877763 234 4566555544 433 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
.|++|++.+++|++++++|+| +|.|+|=|.+....... +|- ..++-.|+.+.|+++|++||+++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~~---------~D~----~DsSvTRs~~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFDE---------FDE----EDSSVTRSDEHFRELFKQAGLRL 196 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEEE---------EET----TTTEEEEEHHHHHHHHHHCT-EE
T ss_pred ccCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCcc---------cCC----ccCeeecCHHHHHHHHHHcCCEE
Confidence 999999999999999999999 89999999887654211 111 12345789999999999999998
Q ss_pred eEEEee
Q 018116 344 YKITNV 349 (360)
Q Consensus 344 ~~~~~~ 349 (360)
++...-
T Consensus 197 v~~~~Q 202 (218)
T PF05891_consen 197 VKEEKQ 202 (218)
T ss_dssp EEEEE-
T ss_pred EEeccc
Confidence 886544
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.34 E-value=2.2e-11 Score=107.78 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=100.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--C-CCccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-Y--I-PPADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~--~-p~~D~i~~~~~l 263 (360)
.+..+|||||||+|.++..+++. ..+++++|. +.+++.++. ..++++...|+.. + . ..||+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45789999999999999988875 578999999 787776653 3457788777754 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc-cCCcccCHHHHHHHHHHCCCc
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS-VDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~~t~~e~~~ll~~aGf~ 342 (360)
++.++. ..+|+++.+.|+| ||.+++........................-... ...+..+.++|.++++++||+
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKP---GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCH--HHHHHHHHHHcCC---CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 998875 4689999999999 9998876543111000000000000000000000 012345889999999999999
Q ss_pred eeEEEee
Q 018116 343 HYKITNV 349 (360)
Q Consensus 343 ~~~~~~~ 349 (360)
+++....
T Consensus 200 ~v~~~~~ 206 (233)
T PRK05134 200 VQDITGL 206 (233)
T ss_pred EeeeeeE
Confidence 9887643
No 69
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=8.9e-12 Score=105.98 Aligned_cols=144 Identities=22% Similarity=0.261 Sum_probs=108.9
Q ss_pred EEEEeCCCCchHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-----C-C-CccEEEeccc
Q 018116 198 SIVDVGGGNGGFSKIISEAFPG--IKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY-----I-P-PADAYFFKLV 262 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~-----~-p-~~D~i~~~~~ 262 (360)
+||+||||.|.....+++..|+ +++..+|. |.+++..++ ..++.-...|+..+ . + ..|++++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999987 89999999 999887764 45666666676542 1 1 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCC---cccCHHHHHHHHHHC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG---KERTDEEWKTLFLDA 339 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g---~~~t~~e~~~ll~~a 339 (360)
|.-++++.....+++++++|+| ||.|++-|....+-.... +. ....++-+..+...| -.++.+++.++|.++
T Consensus 154 LSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 9999999999999999999999 999999988765422110 00 112222233332223 235899999999999
Q ss_pred CCceeEE
Q 018116 340 GFTHYKI 346 (360)
Q Consensus 340 Gf~~~~~ 346 (360)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9986654
No 70
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.30 E-value=3.3e-11 Score=103.51 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=94.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CccEEEeccccccCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ---YIP--PADAYFFKLVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh~~~ 267 (360)
++..+|||||||+|.++..+++. ...+++++|+ +++++.++ ..+++++.+|+.+ +.+ .||+|++.+++||++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~-~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACV-ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHH-HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 35679999999999999888865 4668899999 88888775 3468888888865 233 599999999999998
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh----------hcccCCcccCHHHHHHHHH
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM----------SVSVDGKERTDEEWKTLFL 337 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~----------~~~~~g~~~t~~e~~~ll~ 337 (360)
+. .++|+++.+.+++ +++.- ++..... . .......-.+ ......+..+.+++.++++
T Consensus 90 d~--~~~l~e~~r~~~~------~ii~~---p~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH------AIVSF---PNFGYWR-V-RWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG 156 (194)
T ss_pred CH--HHHHHHHHHhCCe------EEEEc---CChhHHH-H-HHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence 75 4678888665443 33321 1110000 0 0000000000 0001124568999999999
Q ss_pred HCCCceeEEEeeC
Q 018116 338 DAGFTHYKITNVF 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||++++....+
T Consensus 157 ~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 157 ELNLRILDRAAFD 169 (194)
T ss_pred HCCCEEEEEEEec
Confidence 9999999877663
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.28 E-value=3.1e-11 Score=95.57 Aligned_cols=94 Identities=17% Similarity=0.278 Sum_probs=76.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---C-CCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---Y-IPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~-~p~~D~i~~~~ 261 (360)
..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.+++ ..+++++.+|... . .+.||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 45567999999999999999999999999999999 888877653 3578999888754 1 23699999876
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
..+ ...++++++++.|+| ||++++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 543 235789999999999 8988774
No 72
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.25 E-value=8.7e-11 Score=97.79 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=98.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC---CC--CccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY---IP--PADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~---~p--~~D~i~~~~~lh~~ 266 (360)
.+++.+|||+|||.|.++..|.+. .++++.|+|+ ++.+..+. ...++++.+|+.+. +| .||.|+++.+|.++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 367899999999999999888875 6999999999 65554443 56688999999773 55 59999999999998
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh----hhcc----------cCCcccCHHHH
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL----MSVS----------VDGKERTDEEW 332 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~----~~~~----------~~g~~~t~~e~ 332 (360)
..++ ++|+++.| - |.+.+|.-+-+ .-+.....+. |-.. .|=...|..++
T Consensus 89 ~~P~--~vL~EmlR---V---gr~~IVsFPNF---------g~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 89 RRPD--EVLEEMLR---V---GRRAIVSFPNF---------GHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred hHHH--HHHHHHHH---h---cCeEEEEecCh---------HHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 7764 56888854 4 55566533211 1111111111 1000 11234489999
Q ss_pred HHHHHHCCCceeEEEeeCC
Q 018116 333 KTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~ 351 (360)
++++++.|+++.+...+.+
T Consensus 152 e~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 152 EDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHHHCCCEEEEEEEEcC
Confidence 9999999999999888754
No 73
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.25 E-value=7.2e-11 Score=103.76 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=100.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEeCCCCC-C--C-CCccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TE-NLKYIAGDMFQ-Y--I-PPADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-ri~~~~~D~~~-~--~-p~~D~i~~~~~l 263 (360)
...+|||+|||+|.++..+++. ..+++++|. +.+++.++. .. ++++...|+.+ + . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4679999999999999988876 356999999 778776653 22 68888888765 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-hhhc-c-----cCCcccCHHHHHHHH
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-LMSV-S-----VDGKERTDEEWKTLF 336 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~-~-----~~g~~~t~~e~~~ll 336 (360)
|+..+. ..+|+++.+.|+| ||.+++........ . ........ .... . ......+..+|.+++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~---gG~l~i~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 191 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKP---GGILFFSTINRTPK--S----YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL 191 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCC---CcEEEEEecCCCch--H----HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH
Confidence 998875 4689999999999 89988765432110 0 00000000 0000 0 012344788999999
Q ss_pred HHCCCceeEEEee
Q 018116 337 LDAGFTHYKITNV 349 (360)
Q Consensus 337 ~~aGf~~~~~~~~ 349 (360)
+++||+++++...
T Consensus 192 ~~~G~~i~~~~~~ 204 (224)
T TIGR01983 192 ESAGLRVKDVKGL 204 (224)
T ss_pred HHcCCeeeeeeeE
Confidence 9999999887644
No 74
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.24 E-value=5.4e-11 Score=99.86 Aligned_cols=98 Identities=26% Similarity=0.439 Sum_probs=80.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
...+|||+|||+|..+..+++.+|..+++++|+ +.+++.++. .+.+++...|.++..+ .||+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 678999999999999999999999999999999 888887764 2339999999988655 6999999877765
Q ss_pred CCh---hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 266 FGD---EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 266 ~~~---~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
-.+ +-..++++.+.+.|+| ||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 443 3467899999999999 99997644
No 75
>PTZ00146 fibrillarin; Provisional
Probab=99.23 E-value=5.5e-10 Score=99.91 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=92.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCC------CCCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PH----AVANMPQTENLKYIAGDMFQY------IPPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~ri~~~~~D~~~~------~p~~D~i~~~ 260 (360)
+.+..+|||+|||+|.++..+++.. +.-+++++|+ +. +++.+....+|.++.+|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999986 3558999998 54 555555457899999998653 2359999876
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.. .++ +...++.++++.|+| ||+++|...........+ . ...++ +|. ++|+++|
T Consensus 210 va---~pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~---p--------------e~~f~-~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA---QPD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAK---P--------------EVVFA-SEV-QKLKKEG 263 (293)
T ss_pred CC---Ccc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCC---H--------------HHHHH-HHH-HHHHHcC
Confidence 53 133 344567789999999 999998321111111000 0 00012 344 8889999
Q ss_pred CceeEEEeeCC
Q 018116 341 FTHYKITNVFG 351 (360)
Q Consensus 341 f~~~~~~~~~~ 351 (360)
|+.++...+..
T Consensus 264 F~~~e~v~L~P 274 (293)
T PTZ00146 264 LKPKEQLTLEP 274 (293)
T ss_pred CceEEEEecCC
Confidence 99998888743
No 76
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.23 E-value=8.3e-11 Score=109.15 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=84.9
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-CccEE
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP-PADAY 257 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p-~~D~i 257 (360)
+++.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++. .-..++...|.+...+ .||+|
T Consensus 188 Ll~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 188 LLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 344454 23346899999999999999999999999999999 888887763 2345677888876544 59999
Q ss_pred EeccccccC---ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 258 FFKLVFHAF---GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 258 ~~~~~lh~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+++-.+|+. ..+...++++++.+.|+| ||.++|+-.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 999888863 334567899999999999 999988653
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.23 E-value=1.8e-10 Score=103.02 Aligned_cols=123 Identities=21% Similarity=0.354 Sum_probs=93.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CccEEEeccccc-
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PADAYFFKLVFH- 264 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~D~i~~~~~lh- 264 (360)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. .++++++.+|+.++.+ .||+|+++-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456999999999999999999999999999999 888887763 3479999999987543 599999843322
Q ss_pred -----cCChhH------------------HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc
Q 018116 265 -----AFGDED------------------CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS 321 (360)
Q Consensus 265 -----~~~~~~------------------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 321 (360)
.+..+. ...+++++.+.|+| ||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC-------------------------
Confidence 222111 24688999999999 888877210
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....+++.++|+++||+.+++..-
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 013467889999999998777554
No 78
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.22 E-value=3.2e-10 Score=102.87 Aligned_cols=135 Identities=19% Similarity=0.370 Sum_probs=99.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~D~i~~~~~l 263 (360)
..+..+|||+|||+|..+..+++.+|..+++++|+ +.+++.+++ ..+++++.+|++.+.+ .||+|+++--.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 888876653 3689999999987544 59999884221
Q ss_pred ------ccCCh------------------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh
Q 018116 264 ------HAFGD------------------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS 319 (360)
Q Consensus 264 ------h~~~~------------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 319 (360)
+.+.+ +...++++++.+.|+| ||.+++ +. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g----------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----G----------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----C-----------------
Confidence 11111 1235788999999999 888877 21 0
Q ss_pred cccCCcccCHHHHHHHHHHCCCceeEE-EeeCCceeEEEEe
Q 018116 320 VSVDGKERTDEEWKTLFLDAGFTHYKI-TNVFGLKSLIEVY 359 (360)
Q Consensus 320 ~~~~g~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~vi~~~ 359 (360)
....+++.+++++.||..+++ .+..+...++.++
T Consensus 240 ------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 ------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 012356888999999986666 4445666666655
No 79
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.18 E-value=7.6e-11 Score=101.78 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=77.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC-CC-C--CC--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDM-FQ-Y--IP--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~-~~-~--~p--~~D~i~~~~ 261 (360)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+ .. + .+ .||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999999 888887753 36799999998 33 2 33 499999865
Q ss_pred ccccCC------hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFG------DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...+.. ......+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 443221 11235789999999999 99998854
No 80
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.18 E-value=1.2e-09 Score=96.09 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=115.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC------CCCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG--IKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY------IPPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~------~p~~D~i 257 (360)
...-+||||.||+|.+....+..+|. .++...|+ +..++..++ .+-++|..+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35689999999999999999999997 78999999 777776553 45559999999983 3568999
Q ss_pred EeccccccCChhHHH-HHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHh--HhhhhhhhcccCCcccCHHHHHH
Q 018116 258 FFKLVFHAFGDEDCL-KILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAK--LLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~-~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~--~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
+.+.....++|.+.+ ..|+.+++++.| ||.|+....-.+++....+....+ ...++.| +.||+.|..+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvM------RrRsq~EmD~ 284 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVM------RRRSQAEMDQ 284 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchHHHHHHHhcccCCCceEE------EecCHHHHHH
Confidence 999999999997755 479999999999 888877554333322110000000 0011111 5689999999
Q ss_pred HHHHCCCceeEE-EeeCCceeEEEEeC
Q 018116 335 LFLDAGFTHYKI-TNVFGLKSLIEVYP 360 (360)
Q Consensus 335 ll~~aGf~~~~~-~~~~~~~~vi~~~~ 360 (360)
+++++||..+.. .+-.|-++|..|++
T Consensus 285 Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 285 LVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHcCCchhhheeccCCceEEEeecC
Confidence 999999985443 45577788888765
No 81
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.17 E-value=4e-10 Score=97.87 Aligned_cols=131 Identities=21% Similarity=0.288 Sum_probs=100.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------------QTENLKYIAGDMFQ-YI- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~ri~~~~~D~~~-~~- 251 (360)
..+..+||+.|||.|.-+..|+++ +.+++|+|+ +.+++.+. ...+|++.++|+|+ +.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456789999999999999999987 789999999 88887651 04678999999999 22
Q ss_pred --CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc--cc
Q 018116 252 --PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK--ER 327 (360)
Q Consensus 252 --p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~--~~ 327 (360)
..||+|+=..+|+-++++...+..+.++++|+| ||+++++....+.... .|. ..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~-------------------~GPPf~v 170 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEM-------------------EGPPFSV 170 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCS-------------------SSSS---
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCC-------------------CCcCCCC
Confidence 259999999999999999999999999999999 9996665554433211 121 23
Q ss_pred CHHHHHHHHHHCCCceeEEEe
Q 018116 328 TDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~ 348 (360)
+.+++.++|. .+|++.....
T Consensus 171 ~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 171 TEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp -HHHHHHHHT-TTEEEEEEEE
T ss_pred CHHHHHHHhc-CCcEEEEEec
Confidence 7899999998 7888776654
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.17 E-value=1e-09 Score=97.99 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=88.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~~~~lh~ 265 (360)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .+++.+..+|. .||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 467899999999999988776653 346999999 888887764 13344433332 5999987532
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
.+....+++++.+.|+| ||.+++..... ...+++.+.+++.||++++
T Consensus 189 --~~~~~~l~~~~~~~Lkp---gG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 189 --ANPLLELAPDLARLLKP---GGRLILSGILE----------------------------EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred --HHHHHHHHHHHHHhcCC---CcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEEE
Confidence 23346789999999999 99999864321 0346778899999999998
Q ss_pred EEeeCCceeEEEE
Q 018116 346 ITNVFGLKSLIEV 358 (360)
Q Consensus 346 ~~~~~~~~~vi~~ 358 (360)
+....+-.+++.-
T Consensus 236 ~~~~~~W~~~~~~ 248 (250)
T PRK00517 236 VLERGEWVALVGK 248 (250)
T ss_pred EEEeCCEEEEEEE
Confidence 8777665555443
No 83
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.15 E-value=6.8e-10 Score=96.81 Aligned_cols=132 Identities=15% Similarity=0.254 Sum_probs=100.7
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC-
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IP- 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p- 252 (360)
++..+.. .....+|||+|||+|..+..++++++..+++++++ +.+.+.|++ .+||++++.|+..- .+
T Consensus 35 LL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 35 LLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 4444442 34489999999999999999999999999999999 888887764 68999999999762 22
Q ss_pred -CccEEEeccccccCChh----------------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhh
Q 018116 253 -PADAYFFKLVFHAFGDE----------------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGD 315 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~----------------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d 315 (360)
.||+|+|+=-.+.-... ....+++.+.+.|+| ||++.++-..
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~------------------ 172 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP------------------ 172 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH------------------
Confidence 49999986544332221 256789999999999 9999875421
Q ss_pred hhhhcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 316 TLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 316 ~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
-...+|.+++++.+|...++..+
T Consensus 173 -----------erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 173 -----------ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred -----------HHHHHHHHHHHhcCCCceEEEEe
Confidence 03467888899989988877666
No 84
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.15 E-value=9.1e-10 Score=95.57 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=86.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC--
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------------QTENLKYIAGDMFQ-YI-- 251 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~ri~~~~~D~~~-~~-- 251 (360)
.+..+||+.|||.|.-+..|+++ +.+++++|+ +.+++.+. ...+|++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35689999999999999999987 889999999 87777631 14689999999998 32
Q ss_pred ---CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 252 ---PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 252 ---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..||+|+-..++++++++...+..+.+.++|+| ||+++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEec
Confidence 259999999999999999999999999999999 99998887643
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.14 E-value=2.5e-09 Score=91.22 Aligned_cols=123 Identities=19% Similarity=0.291 Sum_probs=91.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCCCCC--CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TEN-LKYIAGDMFQYIP--PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~r-i~~~~~D~~~~~p--~~D~i~~~~~ 262 (360)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .++ +.++.+|+.++.+ .||+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 46679999999999999999988 689999999 888877643 222 8899999887544 5999998654
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccC
Q 018116 263 FHAFG-------------------DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVD 323 (360)
Q Consensus 263 lh~~~-------------------~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 323 (360)
+...+ ......+++++.++|+| ||.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~-------------------------- 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSS-------------------------- 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEcc--------------------------
Confidence 43211 12245689999999999 8988775321
Q ss_pred CcccCHHHHHHHHHHCCCceeEEEee
Q 018116 324 GKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 324 g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....+++.++++++||++..+...
T Consensus 151 --~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 151 --LTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred --cCCHHHHHHHHHHCCCeeeeeeec
Confidence 013356788999999988776544
No 86
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=3.6e-10 Score=97.82 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=73.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP---PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p---~~D~i~~~ 260 (360)
..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.+++ .++++++.+|+.+..+ .||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 45678999999999999999998875 568999999 888876653 2469999999977332 59999999
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
..++++++ ++.+.|+| ||+|++.
T Consensus 150 ~~~~~~~~--------~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 150 AAASTIPS--------ALVRQLKD---GGVLVIP 172 (205)
T ss_pred cCcchhhH--------HHHHhcCc---CcEEEEE
Confidence 88876653 46677999 9998774
No 87
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.4e-09 Score=95.37 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=87.2
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-~~ 254 (360)
+.+++.++ .....+|||+|||.|.+++.+++.+|..+++.+|. ..+++.++. .++..+...|.+++.+ .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 45667777 45555999999999999999999999999999999 788888775 2333577788888655 59
Q ss_pred cEEEeccccccC---ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 255 DAYFFKLVFHAF---GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 255 D~i~~~~~lh~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|.|+++=-+|.= ...-..++++.+++.|++ ||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 999998888742 233345899999999999 999988654
No 88
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.12 E-value=1.9e-09 Score=98.16 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=75.5
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEec------
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFK------ 260 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~------ 260 (360)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 888887764 3569999999988654 59999985
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 261 -------LVFHAFGD----------EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 261 -------~~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.+++|-|. +...++++++.+.|+| ||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 23333221 1356789999999999 777654
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.12 E-value=1e-09 Score=99.71 Aligned_cols=96 Identities=21% Similarity=0.377 Sum_probs=75.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEecc---
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFKL--- 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~~--- 261 (360)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 899887764 3589999999987554 599999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 ----------VFHAFGD----------EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 ----------~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.++|-+. +...++++.+.+.|+| ||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1121111 1236789999999999 887765
No 90
>PHA03411 putative methyltransferase; Provisional
Probab=99.10 E-value=1.7e-09 Score=95.68 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=91.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCC--CCccEEEeccccccCChhH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYI--PPADAYFFKLVFHAFGDED 270 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~--p~~D~i~~~~~lh~~~~~~ 270 (360)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 346999999999999999998887889999999 999988775 468999999998732 3599999988888765432
Q ss_pred H------------------HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 271 C------------------LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 271 ~------------------~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
. .+.++.+...|+| +|.+++. ....+ .+ ....+.++|
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~--yss~~-----------~y---------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA--YSGRP-----------YY---------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE--Eeccc-----------cc---------cccCCHHHH
Confidence 2 3456666777888 7766554 11110 11 123378999
Q ss_pred HHHHHHCCCc
Q 018116 333 KTLFLDAGFT 342 (360)
Q Consensus 333 ~~ll~~aGf~ 342 (360)
+.+++++||.
T Consensus 199 ~~~l~~~g~~ 208 (279)
T PHA03411 199 LKWSKQTGLV 208 (279)
T ss_pred HHHHHhcCcE
Confidence 9999999995
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.10 E-value=1.7e-09 Score=93.23 Aligned_cols=93 Identities=24% Similarity=0.293 Sum_probs=74.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-CCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I-PPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~-p~~D~i~~ 259 (360)
..+..+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ .+++.++.+|+.+. . +.||.|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5678899999999999999998764 5679999999 888886653 36899999998652 2 36999998
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.. ...+...+++.+.+.|+| ||++++
T Consensus 118 ~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcCC---CcEEEE
Confidence 43 223346789999999999 898876
No 92
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.10 E-value=2.7e-09 Score=100.03 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=95.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-CC---CccEEEeccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY-IP---PADAYFFKLVFH 264 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~-~p---~~D~i~~~~~lh 264 (360)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+++. .+ .||+|+++--..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999999 999987764 45899999999763 22 499999844211
Q ss_pred cCCh-----------------------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc
Q 018116 265 AFGD-----------------------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS 321 (360)
Q Consensus 265 ~~~~-----------------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 321 (360)
.-.+ +-..++++.+.+.|+| ||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~lil-EiG~----------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLLL-EHGF----------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEEE-EECc-----------------------
Confidence 0000 1134677777888998 787654 3211
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEE-EeeCCceeEEEEe
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKI-TNVFGLKSLIEVY 359 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~vi~~~ 359 (360)
...+.+.+++++.||..+++ .++.+...++.++
T Consensus 384 -----~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 384 -----DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -----cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 13457788899999987665 4456666666554
No 93
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.08 E-value=2.5e-09 Score=92.69 Aligned_cols=103 Identities=16% Similarity=0.281 Sum_probs=76.9
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAGDMFQY---------IP-- 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~---------~p-- 252 (360)
+...+. .+.++.+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.+. .+
T Consensus 42 ~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 42 IQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 344443 24567899999999999999999986 45799999994432 235699999999873 22
Q ss_pred CccEEEeccccccCChhH---------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 PADAYFFKLVFHAFGDED---------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~---------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+|+|++....+....+. ...+|+.+.+.|+| ||.+++..
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence 599999876666543221 24689999999999 99998854
No 94
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.08 E-value=1.4e-09 Score=90.08 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=82.6
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCCcc
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---IPPAD 255 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~p~~D 255 (360)
+.++. ..++.+++|||||+|..++..+..+|..+++.+|. +++++..++ .++++++.+|..+. .+.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 45555 67889999999999999999999999999999998 777766553 78999999998773 44699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.|++...- ....+|+.+...|+| ||+|++.-
T Consensus 105 aiFIGGg~------~i~~ile~~~~~l~~---ggrlV~na 135 (187)
T COG2242 105 AIFIGGGG------NIEEILEAAWERLKP---GGRLVANA 135 (187)
T ss_pred EEEECCCC------CHHHHHHHHHHHcCc---CCeEEEEe
Confidence 99997752 245789999999999 99998844
No 95
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.07 E-value=5.8e-10 Score=95.70 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C---CC--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y---IP--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~---~p--~~D~i~~~~ 261 (360)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+.+ ..+++++.+|+.+ . .+ .+|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 888877653 3589999999965 1 33 488888765
Q ss_pred ccccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFGDED-------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..+ |+... ...+++.++++|+| ||.|++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 433 22211 14689999999999 99998755
No 96
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.06 E-value=1.3e-09 Score=94.86 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=76.3
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---P 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p 252 (360)
.++..+. ..+..+|||||||+|..+..+++.. ++.+++++|+ +.+++.+++ .++++++.+|..... .
T Consensus 67 ~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 67 IMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 3444455 5678899999999999999888875 4579999999 888887764 357999999987632 2
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.||+|++...+++++ +.+.+.|+| ||++++.
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence 599999987765443 345667999 9998874
No 97
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.06 E-value=6.7e-10 Score=100.52 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCC---CeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEeccccccC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPG---IKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAF 266 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~ 266 (360)
...+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ .+++.+..+|..+ +++ .||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4578999999999999999998874 37899999 899988865 5779999999877 554 5999987543
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+ ..+++++++|+| ||+++++.+
T Consensus 161 ~-----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 P-----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred C-----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 236788999999 999998753
No 98
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.05 E-value=2.6e-09 Score=97.88 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=75.3
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEecc-----
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFKL----- 261 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~~----- 261 (360)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 999887764 3579999999977544 599999851
Q ss_pred --------ccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 --------VFHAFGD----------EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 --------~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.+++.|. +-...+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1122221 2236789999999999 888776
No 99
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.04 E-value=8.7e-10 Score=91.53 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=86.0
Q ss_pred EEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCc
Q 018116 223 TVLDL-PHAVANMPQ---------TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERG 289 (360)
Q Consensus 223 ~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG 289 (360)
+|+|. +.|++.|++ ..+++++.+|+.+ +.+ .||+|++..++|++++. .++|++++++|+| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 47898 899987742 2479999999977 554 49999999999999865 5789999999999 99
Q ss_pred EEEEEeeecCCCCcchhhhhHhHhhhh----hhhccc----C------CcccCHHHHHHHHHHCCCceeEEEeeCCc
Q 018116 290 KVLIMDIVINEKEDKHQVTEAKLLGDT----LMSVSV----D------GKERTDEEWKTLFLDAGFTHYKITNVFGL 352 (360)
Q Consensus 290 ~lli~e~~~~~~~~~~~~~~~~~~~d~----~~~~~~----~------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 352 (360)
++++.|...++..... .......... ..+... . ....+.+++.++|+++||+.++......+
T Consensus 76 ~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 76 RVSILDFNKSNQSVTT-FMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEEEEECCCCChHHHH-HHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 9999998765432110 0000000000 000000 0 12348999999999999999988777554
No 100
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.04 E-value=1e-09 Score=89.44 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=94.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CC-CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY--IP-PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~--~p-~~D~i~~~~~l 263 (360)
...+|||+|||+|.++..|++.-=..+.+|+|+ +.+++.|+. .+.|+|...|+.+| .+ .||+|+-..++
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 334999999999999999998743345899999 888776652 55699999999985 23 59999876655
Q ss_pred ccC------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHH
Q 018116 264 HAF------GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFL 337 (360)
Q Consensus 264 h~~------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~ 337 (360)
..+ ++......+..+.+.|+| ||.++|... -.|.+|+.+.++
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSC-----------------------------N~T~dELv~~f~ 194 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSC-----------------------------NFTKDELVEEFE 194 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCC---CcEEEEEec-----------------------------CccHHHHHHHHh
Confidence 432 223335578888899999 887777321 228889999999
Q ss_pred HCCCceeEEEeeCC
Q 018116 338 DAGFTHYKITNVFG 351 (360)
Q Consensus 338 ~aGf~~~~~~~~~~ 351 (360)
.-||+.....|.|.
T Consensus 195 ~~~f~~~~tvp~pt 208 (227)
T KOG1271|consen 195 NFNFEYLSTVPTPT 208 (227)
T ss_pred cCCeEEEEeeccce
Confidence 99998888877753
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.04 E-value=1.7e-09 Score=94.33 Aligned_cols=98 Identities=13% Similarity=0.201 Sum_probs=76.2
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---P 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p 252 (360)
.+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++ .++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3444454 56788999999999999999999865 568999999 888887763 367999999997632 2
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.||+|++.....+. .+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 59999987665443 3456778999 9998874
No 102
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.00 E-value=6.4e-09 Score=101.70 Aligned_cols=132 Identities=17% Similarity=0.331 Sum_probs=95.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEecc---
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFKL--- 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~~--- 261 (360)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++. .++++++.+|+++..+ .||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 888887764 3589999999887543 599999832
Q ss_pred -----------ccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc
Q 018116 262 -----------VFHAFGD----------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV 320 (360)
Q Consensus 262 -----------~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 320 (360)
++.+.|. +-..++++++.+.|+| ||.+++ |.-.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~---------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF---------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC----------------------
Confidence 1111111 1235678889999999 888765 3210
Q ss_pred ccCCcccCHHHHHHHHHHCCCceeEE-EeeCCceeEEEE
Q 018116 321 SVDGKERTDEEWKTLFLDAGFTHYKI-TNVFGLKSLIEV 358 (360)
Q Consensus 321 ~~~g~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~vi~~ 358 (360)
...+.+.+++++.||..+++ .++.+...++.+
T Consensus 272 ------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 ------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 03456778888899986665 445665555544
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.98 E-value=4.8e-09 Score=90.21 Aligned_cols=100 Identities=16% Similarity=0.226 Sum_probs=77.0
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CC-CCc
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---YI-PPA 254 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~~-p~~ 254 (360)
+..+. ..+..+|||+|||+|.++..+++..|+.+++++|. +.+++.+++ .++++++.+|+.+ .. +.+
T Consensus 33 ~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 33 ISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 34444 45678999999999999999998888999999999 888887653 3579999999865 22 246
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|.+++.. ......+++++.+.|+| ||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 7665421 12346789999999999 999888754
No 104
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.97 E-value=3.6e-09 Score=98.53 Aligned_cols=106 Identities=12% Similarity=0.178 Sum_probs=80.2
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---YIP-- 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~~p-- 252 (360)
+++.+. ......+||||||+|.++..+++++|+..++|+|+ +.+++.+.+ ..++.++.+|+.. .++
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 34456999999999999999999999999999999 778766642 4679999999853 344
Q ss_pred CccEEEeccccccCChhH-----HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDED-----CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~-----~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+|.|++..... |+... ...+|+.++++|+| ||.+.+..-
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKP---GGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 599998754322 33211 14789999999999 999988553
No 105
>PRK14967 putative methyltransferase; Provisional
Probab=98.97 E-value=1.6e-08 Score=88.80 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=74.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP--PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh 264 (360)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455689999999999999988875 3458999999 888876553 3468889999876433 599999863322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 265 AFGD-------------------EDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 265 ~~~~-------------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.-+. .....+++++.+.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 1111 1135688999999999 99998765443
No 106
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.97 E-value=7.4e-09 Score=94.38 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=71.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-CCccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-PPADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-p~~D~i~~~~~lh 264 (360)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .+++.+...+..... .+||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 45689999999999999887764 4568999999 888887764 346777766643322 369999986443
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+....++.++.++|+| ||.+++...
T Consensus 236 ----~~l~~ll~~~~~~Lkp---gG~li~sgi 260 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKP---GGWLILSGI 260 (288)
T ss_pred ----HHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 2345789999999999 999988654
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=3.7e-09 Score=80.00 Aligned_cols=92 Identities=22% Similarity=0.391 Sum_probs=76.0
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCCCC----CCccEEEeccccccC
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------QTENLKYIAGDMFQYI----PPADAYFFKLVFHAF 266 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~ri~~~~~D~~~~~----p~~D~i~~~~~lh~~ 266 (360)
+|+|+|||.|.++..+++ .+..+++++|. +..++.++ ...++++..+|+.+.. +++|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67889999999 77666554 2578999999997732 369999999999875
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.+....+++++.+.|+| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 44567899999999999 8888765
No 108
>PRK04457 spermidine synthase; Provisional
Probab=98.96 E-value=2.2e-09 Score=96.29 Aligned_cols=98 Identities=20% Similarity=0.348 Sum_probs=77.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC-CccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YIP-PADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~p-~~D~i~~~~ 261 (360)
+++++|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|++-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999999999999999999 999987763 3789999999865 233 699998742
Q ss_pred cccc--CChh-HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHA--FGDE-DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~--~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+. .+.. ....+++++++.|+| ||.+++.-
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEEc
Confidence 221 1211 125899999999999 88888753
No 109
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.93 E-value=2.7e-09 Score=83.64 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=75.1
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C--CC--CccEEEecccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y--IP--PADAYFFKLVF 263 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~--~p--~~D~i~~~~~l 263 (360)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+.+ . .+ .||+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 888876653 4789999999977 2 33 59999997666
Q ss_pred ccCC------hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 264 HAFG------DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 264 h~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+... .+....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 5432 12346789999999999 89888764
No 110
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=2e-08 Score=85.70 Aligned_cols=148 Identities=13% Similarity=0.128 Sum_probs=95.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------------
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------------------------- 236 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------- 236 (360)
+..++.+...+-....+|||||-+|.++..+++.|....+.|+|+ +..++.|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 334555554456788999999999999999999999889999999 888876652
Q ss_pred ----------------CCCeEEE-------eCCCCC-CCCCccEEEeccc----cccCChhHHHHHHHHHHHhccCCCCC
Q 018116 237 ----------------TENLKYI-------AGDMFQ-YIPPADAYFFKLV----FHAFGDEDCLKILKKCREAIAGNGER 288 (360)
Q Consensus 237 ----------------~~ri~~~-------~~D~~~-~~p~~D~i~~~~~----lh~~~~~~~~~~L~~~~~~L~p~~~g 288 (360)
.+++.|. .-|+.. ..+.||+|+|-.+ =-+|.|+-.+++++++.+.|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 0122222 233433 2457999987443 2347899999999999999999 6
Q ss_pred cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc-cCCcccCHHHHHHHHHHCCC
Q 018116 289 GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS-VDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 289 G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~~t~~e~~~ll~~aGf 341 (360)
|.|++ |+- +.. .+....... ..... .......++.+.+++.+.+.
T Consensus 203 GiLvv-EPQ----pWk-sY~kaar~~--e~~~~ny~~i~lkp~~f~~~l~q~~v 248 (288)
T KOG2899|consen 203 GILVV-EPQ----PWK-SYKKAARRS--EKLAANYFKIFLKPEDFEDWLNQIVV 248 (288)
T ss_pred cEEEE-cCC----chH-HHHHHHHHH--HHhhcCccceecCHHHHHhhhhhhhh
Confidence 66555 421 111 111111111 01111 11224478899999998843
No 111
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.93 E-value=3.6e-09 Score=90.22 Aligned_cols=97 Identities=16% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCch--HHHH--HHHHC----C-CCeEEEeec-hHHHhcCCC----------------------------
Q 018116 195 GLGSIVDVGGGNGG--FSKI--ISEAF----P-GIKCTVLDL-PHAVANMPQ---------------------------- 236 (360)
Q Consensus 195 ~~~~iLDvG~G~G~--~~~~--l~~~~----p-~~~~~~~D~-~~~~~~a~~---------------------------- 236 (360)
+..+|.-+||++|. ++++ +.+.. + ..++.+.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999995 3333 33311 2 468999999 888887762
Q ss_pred ------CCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 237 ------TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 237 ------~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
..+|.|..+|+.+ +.+ .||+|+|.|||.+++++...+++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 2689999999988 322 59999999999999999999999999999999 8888873
No 112
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.92 E-value=2.2e-08 Score=89.25 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=87.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCC-----CCccEEEecccc---
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQYI-----PPADAYFFKLVF--- 263 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~~~-----p~~D~i~~~~~l--- 263 (360)
..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ...++++.+|+++.. ..||+|++.--.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 999988774 234688999987632 259999875321
Q ss_pred ---ccCChh------------------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc
Q 018116 264 ---HAFGDE------------------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV 322 (360)
Q Consensus 264 ---h~~~~~------------------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 322 (360)
+..+++ -..++++.+.+.|+| ||++++.-.. +
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~~~--~---------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVETSE--R---------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEECc--c----------------------
Confidence 111111 134788888899999 8888763210 0
Q ss_pred CCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 323 DGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 323 ~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
...++.+++++.||+..-...-
T Consensus 220 -----~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 220 -----QAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred -----hHHHHHHHHHHCCCCceeeEcc
Confidence 2346677888888875544433
No 113
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.92 E-value=2.6e-08 Score=89.73 Aligned_cols=97 Identities=13% Similarity=0.211 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCch--HHHH--HHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 018116 196 LGSIVDVGGGNGG--FSKI--ISEAFP----GIKCTVLDL-PHAVANMPQ------------------------------ 236 (360)
Q Consensus 196 ~~~iLDvG~G~G~--~~~~--l~~~~p----~~~~~~~D~-~~~~~~a~~------------------------------ 236 (360)
..+|.-.||++|. ++++ +.+..+ ++++++.|+ +.+++.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999995 4433 444332 468999999 888877652
Q ss_pred -------CCCeEEEeCCCCC-CCC---CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 237 -------TENLKYIAGDMFQ-YIP---PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 237 -------~~ri~~~~~D~~~-~~p---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..+|.|..+|+.+ ++| .||+|+|.+++.|++++...+++++++++|+| ||.|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence 1568999999988 333 59999999999999999999999999999999 89877633
No 114
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.90 E-value=2.1e-08 Score=85.56 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=70.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAGDMFQY---------IP--PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~---------~p--~~D~i~~~ 260 (360)
..++.+|||+|||+|.++..+++++ +..+++++|+.+.. ...+++++.+|+.+. .+ ++|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4677899999999999999999887 56789999994332 245688998998652 22 59999985
Q ss_pred cccc---cCC------hhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 261 LVFH---AFG------DEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 261 ~~lh---~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
...| .|. .+...++|+++.+.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 4322 111 12246789999999999 9998875
No 115
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.86 E-value=9.5e-09 Score=90.45 Aligned_cols=140 Identities=22% Similarity=0.361 Sum_probs=83.4
Q ss_pred CCCEEEEeCCCC---chHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCC--eEEEeCCCCCC-----CC---C-cc
Q 018116 195 GLGSIVDVGGGN---GGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TEN--LKYIAGDMFQY-----IP---P-AD 255 (360)
Q Consensus 195 ~~~~iLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~r--i~~~~~D~~~~-----~p---~-~D 255 (360)
+...+||||||- |..-....+..|+.+++.+|. |-++..++. .++ ..++.+|+.++ -| . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999994 344444445679999999999 888888774 344 89999999883 12 1 34
Q ss_pred -----EEEeccccccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 256 -----AYFFKLVFHAFGD-EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 256 -----~i~~~~~lh~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
.+++..+||+++| ++...+++.++.+|.| |+.|.|.....+..... .....+.+......+..||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~~-----~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPER-----AEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHHH-----HHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHHH-----HHHHHHHHHcCCCCceecCH
Confidence 3788999999987 7788999999999999 88988888776432211 11222222222335678999
Q ss_pred HHHHHHHHHCCCcee
Q 018116 330 EEWKTLFLDAGFTHY 344 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~ 344 (360)
+|+.++|. ||+.+
T Consensus 220 ~ei~~~f~--g~elv 232 (267)
T PF04672_consen 220 EEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHCCT--TSEE-
T ss_pred HHHHHHcC--CCccC
Confidence 99999996 78654
No 116
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.2e-07 Score=85.72 Aligned_cols=129 Identities=21% Similarity=0.346 Sum_probs=90.6
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C-CCeEEEeCCCCCCCC-CccEEEecc--cccc--
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----T-ENLKYIAGDMFQYIP-PADAYFFKL--VFHA-- 265 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~ri~~~~~D~~~~~p-~~D~i~~~~--~lh~-- 265 (360)
+|||+|||+|..++.++.++|+++++++|+ +.+++.|+. . .++.++.+|.+.+.+ .||+|+++= +-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 999988764 2 566777779988765 699998842 1110
Q ss_pred -CCh------------------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcc
Q 018116 266 -FGD------------------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKE 326 (360)
Q Consensus 266 -~~~------------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~ 326 (360)
..+ +-..+++..+.+.|+| ||.+++ +.-.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g~l~l-e~g~---------------------------- 240 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GGVLIL-EIGL---------------------------- 240 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---CcEEEE-EECC----------------------------
Confidence 100 1345678888888888 555544 3211
Q ss_pred cCHHHHHHHHHHCC-CceeEEEee-CCceeEEEE
Q 018116 327 RTDEEWKTLFLDAG-FTHYKITNV-FGLKSLIEV 358 (360)
Q Consensus 327 ~t~~e~~~ll~~aG-f~~~~~~~~-~~~~~vi~~ 358 (360)
-..+...++|.+.| |..+.+..- .+...++.+
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 13567889999999 664544444 444445444
No 117
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.85 E-value=5.6e-09 Score=88.28 Aligned_cols=145 Identities=10% Similarity=0.088 Sum_probs=98.2
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCe-EEEeC---CCCC--CCCCcc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENL-KYIAG---DMFQ--YIPPAD 255 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri-~~~~~---D~~~--~~p~~D 255 (360)
..++...+ ..+..++||+|||||..+..+... --+.+|+|+ .+|+++|.+.+-. .+... +|.. +...+|
T Consensus 115 ~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 115 AEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHhcc--CCccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 44455555 445899999999999999888776 347899999 8999998752111 11111 1322 233699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+|....||-++..= ..++--+...|+| ||.+.+.-...+..... ++.-..-...++.-.+++
T Consensus 191 Li~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f-------------~l~ps~RyAH~~~YVr~~ 252 (287)
T COG4976 191 LIVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDDGGF-------------VLGPSQRYAHSESYVRAL 252 (287)
T ss_pred chhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCCCCe-------------ecchhhhhccchHHHHHH
Confidence 99999999988863 4678899999999 88777654433332110 000000012267788999
Q ss_pred HHHCCCceeEEEee
Q 018116 336 FLDAGFTHYKITNV 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
++..||+++++.++
T Consensus 253 l~~~Gl~~i~~~~t 266 (287)
T COG4976 253 LAASGLEVIAIEDT 266 (287)
T ss_pred HHhcCceEEEeecc
Confidence 99999999999776
No 118
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.85 E-value=1.7e-09 Score=70.29 Aligned_cols=49 Identities=55% Similarity=0.811 Sum_probs=42.9
Q ss_pred HHHHHHHHhCcchhhhhCC-CCCCHHHHHHHcC-CCCCCcccHHHHHHHHH
Q 018116 33 MSLKGAVELGIADIIHSHG-RPITLSELVSALK-IQPTKTSNLFRFMRLLV 81 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~-~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~ 81 (360)
++|++|++|||||.|.+++ ++.|+.||+++++ .+|.++..+.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 5899999999999999875 7999999999999 78777889999999985
No 119
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.84 E-value=2.4e-08 Score=86.96 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=70.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---PPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p~~D~i~~~~~ 262 (360)
..+..+|||||||+|..+..+++.. .+++++|. +.+++.+++ ..+++++.+|..+.. ..||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 5677899999999999998777764 37999999 888876653 346999999987643 25999999876
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++++ .+.+.+.|+| ||++++.-
T Consensus 154 ~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 154 APEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred chhh--------hHHHHHhcCC---CcEEEEEE
Confidence 6544 3456788999 89988754
No 120
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.81 E-value=7.1e-08 Score=87.30 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=84.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~~~~l 263 (360)
..++.+|||||||+|-++++.++. ...+++++|+ |.+++.+++ .+++.+. .... ....||+|+++-.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~- 234 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANIL- 234 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES--
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCC-
Confidence 356789999999999999887775 3447999999 888887764 4566553 1111 1246999987532
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
.+-...+...+.+.|+| ||.+++.-.... ..+++.+.+++ ||++
T Consensus 235 ----~~vL~~l~~~~~~~l~~---~G~lIlSGIl~~----------------------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 235 ----ADVLLELAPDIASLLKP---GGYLILSGILEE----------------------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp ----HHHHHHHHHHCHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHT-TEEE
T ss_pred ----HHHHHHHHHHHHHhhCC---CCEEEEccccHH----------------------------HHHHHHHHHHC-CCEE
Confidence 33456788889999999 888888544321 24566777877 9998
Q ss_pred eEEEeeCCceeEE
Q 018116 344 YKITNVFGLKSLI 356 (360)
Q Consensus 344 ~~~~~~~~~~~vi 356 (360)
++.....+=.+++
T Consensus 279 ~~~~~~~~W~~l~ 291 (295)
T PF06325_consen 279 VEEREEGEWVALV 291 (295)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEECCEEEEE
Confidence 8887765544443
No 121
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.80 E-value=1.6e-07 Score=79.13 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=92.0
Q ss_pred hHHhhcCCcHHHHHHHH----hhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHh
Q 018116 157 WDYMNQNPGLSQRFNQA----MISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVA 232 (360)
Q Consensus 157 ~~~~~~~~~~~~~~~~~----m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 232 (360)
++.+.++|+....|.+. +.....-..+.+++.+. ..+....|.|.|||.+.++..+.+ ..++.-+|+-..
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S--
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--
Confidence 44555666655544443 33332223455555554 123457999999999998865532 356888887211
Q ss_pred cCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhh
Q 018116 233 NMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE 309 (360)
Q Consensus 233 ~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 309 (360)
.+ .++..|+.. |.+ ..|+++++..|..-+ ...+|+++.|.|+| ||.|.|.|...
T Consensus 105 ----n~--~Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~---~G~L~IAEV~S----------- 161 (219)
T PF05148_consen 105 ----NP--RVTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKP---GGILKIAEVKS----------- 161 (219)
T ss_dssp ----ST--TEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGG-----------
T ss_pred ----CC--CEEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheecc---CcEEEEEEecc-----------
Confidence 22 367788865 665 499999988886432 46789999999999 99999988642
Q ss_pred HhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 310 AKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 310 ~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
+.-..+++.+.+++.||+....-.....+.+++.+
T Consensus 162 ---------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 162 ---------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp ---------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred ---------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 12256788899999999988754445556666654
No 122
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.80 E-value=1.1e-07 Score=84.72 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=81.7
Q ss_pred CCCEEEEeCCCCch----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCC----------------------------
Q 018116 195 GLGSIVDVGGGNGG----FSKIISEAFP-----GIKCTVLDL-PHAVANMPQ---------------------------- 236 (360)
Q Consensus 195 ~~~~iLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 236 (360)
+.-+|.-+||++|. +++.+.+.+| .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999994 5555666775 578999999 889887762
Q ss_pred -------CCCeEEEeCCCCCCC--C-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 237 -------TENLKYIAGDMFQYI--P-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 237 -------~~ri~~~~~D~~~~~--p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
...|.|..+|..++. + +||+|+|.|||-+++.+...+++++.+..|+| ||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 246999999998843 3 59999999999999999999999999999999 8988873
No 123
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.80 E-value=5e-08 Score=90.75 Aligned_cols=98 Identities=18% Similarity=0.126 Sum_probs=73.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..++.+|||+|||+|.++...+.. +.+++++|+ +.+++.++. ...+.+..+|+.+ +.+ .||+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 466789999999999998886654 789999999 888876553 2348899999977 443 5999998522
Q ss_pred cc-------cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FH-------AFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh-------~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.. +...+...++|+.+++.|+| ||++++.-
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~ 294 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAV 294 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEE
Confidence 11 11123346899999999999 99988753
No 124
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=9.1e-08 Score=85.84 Aligned_cols=122 Identities=15% Similarity=0.235 Sum_probs=86.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeE----EEeCCCCC-CC-CCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLK----YIAGDMFQ-YI-PPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~----~~~~D~~~-~~-p~~D~i~~~~~ 262 (360)
..++.++||+|||+|-++++.++. -..+++++|+ |.+++.+++ .+.++ ....+..+ +. ..||+|+++ +
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN-I 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN-I 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh-h
Confidence 468899999999999999988875 3446999999 988888775 33443 22222222 22 259999864 3
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
| .+ -.+++...+++.++| ||++++.-.... -.+...+.++++||.
T Consensus 238 L---A~-vl~~La~~~~~~lkp---gg~lIlSGIl~~----------------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 238 L---AE-VLVELAPDIKRLLKP---GGRLILSGILED----------------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred h---HH-HHHHHHHHHHHHcCC---CceEEEEeehHh----------------------------HHHHHHHHHHhCCCe
Confidence 3 22 356888999999999 899888542210 245667888899999
Q ss_pred eeEEEeeCC
Q 018116 343 HYKITNVFG 351 (360)
Q Consensus 343 ~~~~~~~~~ 351 (360)
++++.....
T Consensus 283 v~~~~~~~e 291 (300)
T COG2264 283 VVEVLEREE 291 (300)
T ss_pred EeEEEecCC
Confidence 988877643
No 125
>PRK00811 spermidine synthase; Provisional
Probab=98.79 E-value=2.4e-08 Score=90.67 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCC----CCCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQY----IPPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~----~p~~D~i 257 (360)
+..++||+||||.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|...- ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999997655668999999 988887763 46899999998662 2259999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 258 FFKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 258 ~~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
++-..-+..+... ...+++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854333222221 25788999999999 8877653
No 126
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.76 E-value=7.5e-08 Score=83.87 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=93.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC-CccEEEeccccccCChhHHH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIP-PADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p-~~D~i~~~~~lh~~~~~~~~ 272 (360)
...++||||+|.|..+..++..|.. +.+.+. +.|....++ ..++++..|-....+ .||+|.|.|+|-...++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4578999999999999999998874 777888 777666653 344444433333223 69999999999876665 5
Q ss_pred HHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc--ccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 273 KILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK--ERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 273 ~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~--~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+|+.++++|+| +|++++.-..+-.+.-+. -.......+-.+ ...|. +-..+.+.+.|+.+||++++....|
T Consensus 169 ~LL~~i~~~l~p---~G~lilAvVlP~~pyVE~-~~g~~~~P~e~l--~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILAVVLPFRPYVEF-GGGKSNRPSELL--PVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEEEEecccccEEc-CCCCCCCchhhc--CCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 889999999999 888887654432211110 000000000000 01121 1123344588999999999987775
No 127
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.76 E-value=2.7e-08 Score=85.04 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC--CCC----C-C--C-CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGD--MFQ----Y-I--P-PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D--~~~----~-~--p-~~D~i~~~~~l 263 (360)
....++|||||+|..++.++..|. +++++|. +.|++.+++..++.+...- |-+ + . + +.|+|++..++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 345899999999988888888765 6999999 9999999875555544321 111 1 1 2 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|+++-+ ++.+.++++||+. ||.+.+...
T Consensus 111 HWFdle---~fy~~~~rvLRk~--Gg~iavW~Y 138 (261)
T KOG3010|consen 111 HWFDLE---RFYKEAYRVLRKD--GGLIAVWNY 138 (261)
T ss_pred HhhchH---HHHHHHHHHcCCC--CCEEEEEEc
Confidence 988865 6799999999981 555555443
No 128
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.69 E-value=8.3e-08 Score=88.18 Aligned_cols=92 Identities=15% Similarity=0.276 Sum_probs=70.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---PPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p~~D~i~~~~ 261 (360)
..+..+|||||||+|.++..+++..+. .+++++|. +.+++.+++ .+++.++.+|..+.. ..||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 556789999999999999999998763 57999999 888876653 457999999986632 3599999876
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+++.+ ..+.+.|+| ||++++..
T Consensus 158 g~~~ip--------~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 158 GVDEVP--------ETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred chHHhH--------HHHHHhcCC---CCEEEEEe
Confidence 554332 345667999 99988744
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.69 E-value=7.5e-08 Score=80.71 Aligned_cols=88 Identities=16% Similarity=0.341 Sum_probs=64.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D 255 (360)
.+++.++ ..+..+|||||||+|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ +.+ .+|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 3445555 566789999999999999999988 578999999 888877653 4689999999987 444 389
Q ss_pred EEEeccccccCChhHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILK 276 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~ 276 (360)
.|+++ ..++.+.+...++++
T Consensus 80 ~vi~n-~Py~~~~~~i~~~l~ 99 (169)
T smart00650 80 KVVGN-LPYNISTPILFKLLE 99 (169)
T ss_pred EEEEC-CCcccHHHHHHHHHh
Confidence 88765 444455444444443
No 130
>PLN02366 spermidine synthase
Probab=98.69 E-value=1.4e-07 Score=86.16 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CC-C-CccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YI-P-PADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~-p-~~D~i 257 (360)
+..++||+||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|... .. + .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999986533468999999 878876653 4699999999754 23 2 59999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhccCCCCCcEEEE
Q 018116 258 FFKLVFHAFGDE--DCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 258 ~~~~~lh~~~~~--~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
++-..-.+.+.. -...+++.++++|+| ||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 974332222211 134689999999999 887754
No 131
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.4e-07 Score=80.32 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=86.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISE-AFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-IP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~p 252 (360)
..++...+ ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|. +...+.|.+ .+++.+..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 34556666 88999999999999999999997 457789999999 887777764 57799999999873 33
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
.||.|++ +++++. ..|.+++++|+| ||.+.+.-++.+
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 6999886 567765 679999999999 999998776653
No 132
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.2e-07 Score=78.83 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=77.0
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP---P 253 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p---~ 253 (360)
.+++.+. +++..+|||||||+|+.+.-+++.-. +++.+++ +...+.|++ ..+|.++++|-..-+| .
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 3455555 78899999999999999998888743 8999999 888888764 4569999999988544 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
||.|+.....-..|+ .+.+-|++ ||++++-..
T Consensus 139 yD~I~Vtaaa~~vP~--------~Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE--------ALLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH--------HHHHhccc---CCEEEEEEc
Confidence 999998877665554 24445799 999998655
No 133
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.66 E-value=4.5e-07 Score=79.99 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=74.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---------CCCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---------IPPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---------~p~~ 254 (360)
..+.++|||||||+|.-+..++...+ +.+++.+|. ++..+.|++ .++|+++.+|..+. .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45688999999999999999998865 679999999 888777663 57899999998762 1359
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|+|++- ...+.-..++..+.+.|+| ||.|++-+.
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~---GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKV---GGIIAFDNT 179 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---CeEEEEEcC
Confidence 999873 2334456789999999999 776555443
No 134
>PRK01581 speE spermidine synthase; Validated
Probab=98.66 E-value=1.1e-07 Score=87.45 Aligned_cols=98 Identities=9% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---C-CCcc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQY---I-PPAD 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~~---~-p~~D 255 (360)
..+++||+||||.|..+..+++..+..+++++|+ +.+++.|+. .+|++++.+|..+- . ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4578999999999999998887655679999999 998887662 57999999998762 2 2599
Q ss_pred EEEecccc---ccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 256 AYFFKLVF---HAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 256 ~i~~~~~l---h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+|++-..- .....--...+++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 99985310 001111225689999999999 8887664
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.65 E-value=1.1e-07 Score=85.98 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=74.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---Y-IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~-~p~~D~i~ 258 (360)
+.+.+||+||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766778999999 888776653 3689999988765 1 23699999
Q ss_pred eccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+...-..-+... ...+++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 865432222222 35789999999999 8888775
No 136
>PLN02672 methionine S-methyltransferase
Probab=98.65 E-value=3.4e-07 Score=95.51 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=55.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCeEEEeCCCCCCCC
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------------------TENLKYIAGDMFQYIP 252 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~ri~~~~~D~~~~~p 252 (360)
..+|||+|||+|..++.+++.+|..+++++|+ +.+++.|+. .+|++|+.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 888876632 1479999999988543
Q ss_pred ----CccEEEec
Q 018116 253 ----PADAYFFK 260 (360)
Q Consensus 253 ----~~D~i~~~ 260 (360)
.||+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 49999874
No 137
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.64 E-value=8e-08 Score=82.88 Aligned_cols=100 Identities=13% Similarity=0.232 Sum_probs=72.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-- 252 (360)
..+++.+. +.++.+|||||||+|+.+..+++.. +..+++.+|. +...+.|++ ..+|.++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 34556566 7788999999999999999988875 3457999999 888887764 5689999999877443
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||.|++.......|. .+.+.|++ ||+|++--
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEE
Confidence 5999999887764443 24555899 99998743
No 138
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.64 E-value=1.2e-06 Score=75.55 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=105.0
Q ss_pred hhHHhhcCCcHHHHHHHHhhhCc----chhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHH
Q 018116 156 YWDYMNQNPGLSQRFNQAMISDS----EMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAV 231 (360)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~m~~~~----~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 231 (360)
-+..+.++|.....|....+... .-..+.+++.+. ..+....|.|+|||-+.++. . -..++.-+|+-
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~---~--~~~kV~SfDL~--- 208 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS---S--ERHKVHSFDLV--- 208 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh---c--cccceeeeeee---
Confidence 34455566666555554443322 112344555554 13467899999999998775 1 13356777763
Q ss_pred hcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhh
Q 018116 232 ANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT 308 (360)
Q Consensus 232 ~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~ 308 (360)
..+-.++..|+.. |.+ +.|+++++..|.. . +...++++++|+|+| ||.++|.|.-.
T Consensus 209 -----a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg--t-n~~df~kEa~RiLk~---gG~l~IAEv~S---------- 267 (325)
T KOG3045|consen 209 -----AVNERVIACDMRNVPLEDESVDVAVFCLSLMG--T-NLADFIKEANRILKP---GGLLYIAEVKS---------- 267 (325)
T ss_pred -----cCCCceeeccccCCcCccCcccEEEeeHhhhc--c-cHHHHHHHHHHHhcc---CceEEEEehhh----------
Confidence 2233456788877 554 5999988777753 2 245789999999999 99999987532
Q ss_pred hHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 309 EAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 309 ~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+..+..++.+.+...||.+........++.+++.+|
T Consensus 268 ----------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 ----------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ----------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 222445688899999998777666666777777654
No 139
>PRK03612 spermidine synthase; Provisional
Probab=98.61 E-value=4.3e-07 Score=89.41 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCC---CC-CCc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQ---YI-PPA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~---~~-p~~ 254 (360)
++.++|||||||+|..+..+++ +|. .+++++|+ +++++.+++ .+|++++.+|..+ .. ..|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999986 465 79999999 999987764 3689999999876 22 369
Q ss_pred cEEEeccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 255 DAYFFKLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 255 D~i~~~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999986432211111 123588999999999 8887764
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=98.59 E-value=4.2e-07 Score=78.84 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEEEeccccccCCh
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF---PGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAFGD 268 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~~~ 268 (360)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.++. ..++.++.+|+.. +.. .||+|+++=-.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 999998875 4678999999976 333 5999998655442221
Q ss_pred ----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 269 ----------EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 269 ----------~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.-..++++++.+++++ |.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 1234588999997776 66633
No 141
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.57 E-value=2.6e-07 Score=85.29 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEeCCCCCC-------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------------TENLKYIAGDMFQY------- 250 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~ri~~~~~D~~~~------- 250 (360)
+..+|||+|||-|+-+..-... .-..++|+|+ ...++.|++ .-...|+.+|.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6789999999999877666665 3447999999 777776652 12456788888752
Q ss_pred CC--CccEEEeccccccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 251 IP--PADAYFFKLVFHAF--GDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 251 ~p--~~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.+ .||+|-+...+|+. +.+.+..+|+++.+.|+| ||.+|..-+-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~d 188 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTPD 188 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEecC
Confidence 12 59999999999994 566778899999999999 8888876553
No 142
>PRK04148 hypothetical protein; Provisional
Probab=98.57 E-value=7.9e-07 Score=70.35 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=71.9
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCch-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC----CccEEE
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGG-FSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIP----PADAYF 258 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p----~~D~i~ 258 (360)
+.+.++ .....++||||||+|. ++..|.+. +..++++|. +..++.++ ...++++.+|++++-+ ++|+|+
T Consensus 8 l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~-~~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAK-KLGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHH-HhCCeEEECcCCCCCHHHHhcCCEEE
Confidence 344444 3345789999999996 77777765 789999999 88888776 4457999999999533 699999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+.+ |+.+.+.-+.++++... .-++|.-..
T Consensus 83 sir-----pp~el~~~~~~la~~~~-----~~~~i~~l~ 111 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN-----VPLIIKPLS 111 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC-----CCEEEEcCC
Confidence 876 56666777777776653 456654443
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.56 E-value=2.5e-07 Score=79.12 Aligned_cols=92 Identities=20% Similarity=0.373 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CC--CccEEEeccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY----IP--PADAYFFKLV 262 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~----~p--~~D~i~~~~~ 262 (360)
...+||||||.|.++..+++.+|+..++|+|+ ...+..+.. ..++.++++|+..- ++ ..|-|++.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~-- 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN-- 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence 34899999999999999999999999999999 666655442 68999999998771 23 47776653
Q ss_pred cccCChhH-----------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGDED-----------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~~~-----------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+||+. ...+|+.+++.|+| ||.|.+..
T Consensus 96 ---FPDPWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 96 ---FPDPWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ---S-----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ---CCCCCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 34432 24689999999999 99887754
No 144
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.54 E-value=5.8e-07 Score=86.54 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=77.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---C-C-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY---I-P-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~---~-p-~~D~i~~~~ 261 (360)
..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++ .-+++++.+|+.+. . + .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45678999999999999999999988789999999 888877753 23578999998762 1 2 499998521
Q ss_pred ------ccc-------cCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 262 ------VFH-------AFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 262 ------~lh-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
++. ....++ ..++|+++.+.|+| ||++++......
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~ 376 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSIL 376 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 111 112221 24789999999999 999988775443
No 145
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.53 E-value=3e-07 Score=77.28 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=68.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCCC------C-CccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---------TENLKYIAGDMFQYI------P-PADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~ri~~~~~D~~~~~------p-~~D~ 256 (360)
...+.+|||+|||+|..++.++..++..+++..|.+++++..+. ..++.+...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999998878889999999556654331 477888888875521 2 5999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+.+.++++ ++....+++.+.+.|+| +|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999984 56678899999999999 77777776655
No 146
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.51 E-value=8.8e-07 Score=85.32 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=78.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-C----CCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-I----PPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~----p~~D~i~~ 259 (360)
..++.+|||+|||+|..+..+++..+..+++++|. +.+++.+++ ..++.+..+|.... . ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 45678999999999999999999888789999999 888876653 12344467776542 1 25999986
Q ss_pred ------ccccccCCh-------hH-------HHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 260 ------KLVFHAFGD-------ED-------CLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 260 ------~~~lh~~~~-------~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
..++++.++ ++ ..++|+++.+.|+| ||+|+..+......
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~~ 374 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLPE 374 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChh
Confidence 235554443 11 35799999999999 99999888766543
No 147
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.50 E-value=1.4e-07 Score=79.46 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCC--eEEEeCCCCC--CCC--CccEEEeccccccC-
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTEN--LKYIAGDMFQ--YIP--PADAYFFKLVFHAF- 266 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~r--i~~~~~D~~~--~~p--~~D~i~~~~~lh~~- 266 (360)
...-|||||||+|..+..+... +..++|+|+ |+|++.|.+ .. =.++.+|+-+ |++ .||.+|+...+.++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3778999999999888777664 688999999 999999874 22 3577888877 333 49999887666433
Q ss_pred --------ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 267 --------GDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 267 --------~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
|......++..++.+|++ |++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 344456778889999999 787665
No 148
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.50 E-value=1e-06 Score=77.68 Aligned_cols=126 Identities=14% Similarity=0.231 Sum_probs=89.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC--
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YI-- 251 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~-- 251 (360)
.++..++ ..++.+|||.|.|+|.++..|++. .|.-++..+|. ++..+.|++ .++|.+...|+.+ .+
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4555566 789999999999999999999975 58889999999 777777664 5789999999965 23
Q ss_pred ---CCccEEEeccccccCChhHHHHHHHHHHHhc-cCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 252 ---PPADAYFFKLVFHAFGDEDCLKILKKCREAI-AGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 252 ---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L-~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
..+|.|++ ++|++. ..+..+.++| +| ||++.++-++...
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~ieQ--------------------------- 151 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCIEQ--------------------------- 151 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSHHH---------------------------
T ss_pred cccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCHHH---------------------------
Confidence 24899876 567765 4599999999 88 9999887655321
Q ss_pred CHHHHHHHHHHCCCceeEEEee
Q 018116 328 TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.....+.|++.||..+++..+
T Consensus 152 -v~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 152 -VQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHHHCCCeeeEEEEE
Confidence 123345667788887776554
No 149
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=1.1e-06 Score=85.23 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=77.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--CccEEEec--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PADAYFFK-- 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~D~i~~~-- 260 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|+.+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34668999999999999999888764 468999999 888877653 3468999999876322 59999861
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 261 ----LVF-------HAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 261 ----~~l-------h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.++ .+++.++ -.++|+++.+.|+| ||+++........
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~~ 382 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIEP 382 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 111 1233322 23689999999999 9998887765543
No 150
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=1.3e-06 Score=84.67 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=76.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~p-~~D~i~~~ 260 (360)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4567899999999999999999986 6789999999 888776653 24599999998762 33 59999873
Q ss_pred c------cccc-------CChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 261 L------VFHA-------FGDED-------CLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 261 ~------~lh~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
- ++.+ ++..+ ...+|+++.+.|+| ||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 2 1111 11112 24689999999999 99988655443
No 151
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.46 E-value=2.3e-06 Score=78.38 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=91.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeC----CCCCCC--C--CccEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAG----DMFQYI--P--PADAY 257 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~----D~~~~~--p--~~D~i 257 (360)
...++||||||+|.....++.+.++++++++|+ +.+++.|+. .++|+++.. +++... + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 467999999999999888998989999999999 888887764 357877642 333321 2 59999
Q ss_pred EeccccccCChhH---HHHHHHHHH----------------HhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh
Q 018116 258 FFKLVFHAFGDED---CLKILKKCR----------------EAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM 318 (360)
Q Consensus 258 ~~~~~lh~~~~~~---~~~~L~~~~----------------~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 318 (360)
+++=-+|.-..+. ...-.++++ +.+.+ ||.+-++..+..+.. .......+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~------~~~~~~gw-- 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESK------AFAKQVLW-- 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHH------HHHhhCcE--
Confidence 9987766433321 112233332 22233 566554444433320 00011111
Q ss_pred hcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 319 SVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 319 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
...+-|+.-+...+.+.|++.|.+.+.+..+
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1112356679999999999999987777776
No 152
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.41 E-value=9.4e-07 Score=78.68 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=77.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEeCCCCCC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TE----NLKYIAGDMFQY 250 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----ri~~~~~D~~~~ 250 (360)
.++..|- ++...++|+|||-|+-++.--++- --.++++|+ .-.++.++. .. .+.|+++|.+..
T Consensus 109 ~LI~~y~---~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 109 VLINLYT---KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHHh---ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 3455553 677889999999999877766551 236999999 555777763 12 368889988761
Q ss_pred -----C----CCccEEEecccccc-C-ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 251 -----I----PPADAYFFKLVFHA-F-GDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 251 -----~----p~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
. |.||+|-+.+++|+ | +.+.+..+|+++++.|+| ||.+|-.
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIgT 236 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIGT 236 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEEe
Confidence 2 34999999999998 4 456788899999999999 8877653
No 153
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.38 E-value=2.2e-06 Score=82.72 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=78.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C----C--CCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y----I--PPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~----~--p~~D~i 257 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45678999999999999999998864 568999999 888877653 3569999999865 2 1 159999
Q ss_pred Eec------cccccCCh-------hH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 258 FFK------LVFHAFGD-------ED-------CLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 258 ~~~------~~lh~~~~-------~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
++- .++++.++ ++ -.++|+++.+.|+| ||+|+..+...
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 972 34444333 11 25789999999999 99988776544
No 154
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.37 E-value=1.7e-06 Score=77.56 Aligned_cols=81 Identities=15% Similarity=0.308 Sum_probs=62.2
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCCccEE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPPADAY 257 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~~D~i 257 (360)
.+++..+ ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.+|.|
T Consensus 20 ~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~V 95 (258)
T PRK14896 20 RIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKV 95 (258)
T ss_pred HHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEE
Confidence 3444444 556789999999999999999998 458999999 888876653 4689999999987 66778988
Q ss_pred EeccccccCChh
Q 018116 258 FFKLVFHAFGDE 269 (360)
Q Consensus 258 ~~~~~lh~~~~~ 269 (360)
+++-. ++.+.+
T Consensus 96 v~NlP-y~i~s~ 106 (258)
T PRK14896 96 VSNLP-YQISSP 106 (258)
T ss_pred EEcCC-cccCcH
Confidence 77544 444433
No 155
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.36 E-value=3.1e-06 Score=76.14 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=75.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCCccEEEec-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IPPADAYFFK- 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p~~D~i~~~- 260 (360)
..++.+|||+|||+|..+..+++..+ ...++++|. +..++.+++ ..+++++..|... + .+.||.|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35678999999999999999998775 458999999 888876653 3568999998754 2 2359999862
Q ss_pred -----cccc-------cCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 261 -----LVFH-------AFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 261 -----~~lh-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
.++. .+++++ ..++|+++.+.|+| ||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 1221 123222 24699999999999 898876655443
No 156
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.36 E-value=1.2e-06 Score=75.35 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=66.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC---------------CCCCeEEEeCCC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP---------------QTENLKYIAGDM 247 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---------------~~~ri~~~~~D~ 247 (360)
.+++.+. +.+...++|+|||.|......+..++.-+.+|+++ +...+.+. ...++++..+|+
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 3455555 67788999999999999988887776666999999 66554332 156789999999
Q ss_pred CC-C-----CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 248 FQ-Y-----IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 248 ~~-~-----~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.+ + +.++|+|++++.. |+++ ...-|.+....|++ |.+++-.....+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIISTKPFCPR 163 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEESS-SS-T
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEECCCcCCC
Confidence 87 2 2479999999886 3554 44555777778898 7777665555444
No 157
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.36 E-value=5.2e-07 Score=77.62 Aligned_cols=97 Identities=21% Similarity=0.336 Sum_probs=74.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---------CCCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---------IPPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---------~p~~ 254 (360)
..+.++||+||+++|.-+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+. ...|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 35678999999999999999999987 689999999 877777653 57999999998651 1259
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+|++-. ...+-...+..+.+.|+| |.++++|.+.
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l 157 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVL 157 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTT
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEcccc
Confidence 9998743 444566789999999999 5566666544
No 158
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.34 E-value=4.8e-06 Score=67.31 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=89.7
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-C-----C-
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-Y-----I- 251 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~-----~- 251 (360)
++.++...+ ...+.-||++|.|+|.+..+++++- +....+.++. ++-.....+ .+.++++.||.+. . .
T Consensus 37 A~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 37 ARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 344455555 5678899999999999999988763 5667888988 776666554 6777899999876 2 2
Q ss_pred -CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 252 -PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 252 -p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+.||.|++.--+-.+|-....++|+.+...|++ ||.++.+..-
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 249999999999899999999999999999999 8998887765
No 159
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.33 E-value=2.1e-06 Score=76.92 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=60.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCCcc-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPPAD- 255 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~~D- 255 (360)
..+++..+ ..+..+|||||||+|.++..++++.+ +++++|. +.+++.++. .++++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 34444444 56678999999999999999999975 5999999 888776653 4789999999987 455566
Q ss_pred -EEEeccccccCChh
Q 018116 256 -AYFFKLVFHAFGDE 269 (360)
Q Consensus 256 -~i~~~~~lh~~~~~ 269 (360)
.+++++.-++++.+
T Consensus 95 ~~~vvsNlPy~i~~~ 109 (253)
T TIGR00755 95 QLKVVSNLPYNISSP 109 (253)
T ss_pred cceEEEcCChhhHHH
Confidence 34444554555544
No 160
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.33 E-value=3.1e-06 Score=81.42 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=76.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p-~~D~i~~~ 260 (360)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+++++.+|... + .+ .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999999886 4679999999 888877653 3468999999865 2 12 59999861
Q ss_pred ------cccc-------cCChh-------HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 261 ------LVFH-------AFGDE-------DCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 261 ------~~lh-------~~~~~-------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.++. +++.+ .-.++|.++.+.|+| ||.++........
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~ 371 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTK 371 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCCh
Confidence 1222 12211 125789999999999 8887766655443
No 161
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.33 E-value=1.6e-06 Score=78.37 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=59.9
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCCc--cE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIPPA--DA 256 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p~~--D~ 256 (360)
.+++.+. ..+..+|||||||+|.++..++++.+ +++++|. +.+++.+++ .++++++.+|+.+ +.+.+ |.
T Consensus 33 ~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 33 KIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 3444444 56678999999999999999999965 8999999 888887764 3689999999987 44443 55
Q ss_pred EEeccccccCChh
Q 018116 257 YFFKLVFHAFGDE 269 (360)
Q Consensus 257 i~~~~~lh~~~~~ 269 (360)
|+. +.-++.+.+
T Consensus 109 vv~-NlPY~iss~ 120 (272)
T PRK00274 109 VVA-NLPYNITTP 120 (272)
T ss_pred EEE-eCCccchHH
Confidence 554 444444443
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.31 E-value=2.7e-06 Score=73.27 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=79.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEe-CCCCC--C---CCCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIA-GDMFQ--Y---IPPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~-~D~~~--~---~p~~D~i 257 (360)
..+.++||+||.+.|.-++.++...| +.+.+.+|+ ++..+.|++ .++|+++. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56889999999999999999999999 889999999 888888774 67788888 57765 2 2469999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
++- -...+-.+.|..+.+.|+| |.++++|.+....
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 863 2334456789999999999 5566667666553
No 163
>PLN02476 O-methyltransferase
Probab=98.31 E-value=3.3e-06 Score=75.65 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=75.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I------PPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~ 254 (360)
..+.++|||||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.+|..+. . +.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999999876 668999999 877776653 57999999998662 1 359
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+|++- -+..+-...+..+.+.|+| ||.|++ |.+.
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~---GGvIV~-DNvL 230 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRV---GGVIVM-DNVL 230 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---CcEEEE-ecCc
Confidence 999863 2345567889999999999 666555 5443
No 164
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.30 E-value=9.2e-06 Score=69.10 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=89.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCC-----CccEEEeccccccCChh
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQ-YIP-----PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~-~~p-----~~D~i~~~~~lh~~~~~ 269 (360)
..++|||||=+....+. .++-..++-+|+.+.- -.+...||++ |.| .||+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~--------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQH--------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCCC--------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999986664432 3456679999983311 2246678887 655 49999999999999864
Q ss_pred -HHHHHHHHHHHhccCCCCCcE-----EEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 270 -DCLKILKKCREAIAGNGERGK-----VLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 270 -~~~~~L~~~~~~L~p~~~gG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
+.-++|+++++.|+| +|. |+|+-+... ..|.+..+.+.|.++++.-||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 566899999999999 787 766543211 12466678999999999999998
Q ss_pred eEEEeeCC
Q 018116 344 YKITNVFG 351 (360)
Q Consensus 344 ~~~~~~~~ 351 (360)
++.+...-
T Consensus 177 ~~~~~~~K 184 (219)
T PF11968_consen 177 VKYKKSKK 184 (219)
T ss_pred EEEEecCe
Confidence 88765543
No 165
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.30 E-value=5.1e-06 Score=80.51 Aligned_cols=98 Identities=8% Similarity=0.092 Sum_probs=68.1
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-----
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY----- 250 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~----- 250 (360)
..+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++|+.+|+.+.
T Consensus 287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 33344443 4566899999999999999999885 68999999 999887764 35799999998652
Q ss_pred C--CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 251 I--PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 251 ~--p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
. ..||+|++.- |......+++.+.+ ++| ++.++|
T Consensus 363 ~~~~~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyv 398 (443)
T PRK13168 363 WALGGFDKVLLDP-----PRAGAAEVMQALAK-LGP---KRIVYV 398 (443)
T ss_pred hhcCCCCEEEECc-----CCcChHHHHHHHHh-cCC---CeEEEE
Confidence 2 2499998632 21122345565555 577 565555
No 166
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.26 E-value=4.4e-06 Score=72.77 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=69.3
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEeCCCCC--C--CC--CccEEEecccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TE-NLKYIAGDMFQ--Y--IP--PADAYFFKLVF 263 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-ri~~~~~D~~~--~--~p--~~D~i~~~~~l 263 (360)
..+||||||.|.+...+|+++|+..++|+++ ...+..+.+ .- ++.++++|... + .+ +.|-|++.+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999999 555544432 33 89999999866 1 22 46666653211
Q ss_pred ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 264 HAFGDED-------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 264 h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
-|+... ...+|+.+.+.|+| ||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 122111 23689999999999 99988754
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.26 E-value=3.4e-06 Score=81.12 Aligned_cols=127 Identities=21% Similarity=0.291 Sum_probs=80.6
Q ss_pred ChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhh--cCCCCEEEEeCCCCchHHHHHHHHC----CCCeEEEeec-
Q 018116 155 NYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKI--FEGLGSIVDVGGGNGGFSKIISEAF----PGIKCTVLDL- 227 (360)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~iLDvG~G~G~~~~~l~~~~----p~~~~~~~D~- 227 (360)
..|+.+++|+.....|.+++.. .+.+..... ......|+|||||+|-++...+++. ...++.+++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 5688888888877777776532 122222100 0135789999999999987766653 3568999997
Q ss_pred hHHHhcC----C--C-CCCeEEEeCCCCC-CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEE
Q 018116 228 PHAVANM----P--Q-TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 228 ~~~~~~a----~--~-~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
+.+.... + . .++|+++.+|+.+ ..| .+|+|++-..=.....+-....|..+.+.|+| ||.+
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~ 293 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIM 293 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEE
Confidence 5544322 1 1 6899999999988 555 69999875443333344556778888999999 6544
No 168
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.8e-06 Score=70.52 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=73.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCC----------------CCCeEEEe
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQ----------------TENLKYIA 244 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~----------------~~ri~~~~ 244 (360)
.+++.+...+.++.++||||+|+|.++..++.-- ++...+|+|. ++.++..++ ..++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 3455555557789999999999999998887542 4555689998 888875542 46899999
Q ss_pred CCCCCC---CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 245 GDMFQY---IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 245 ~D~~~~---~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
||...- ...||.|++-.. +.++.+++-.-|+| ||+++|
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrlli 191 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLI 191 (237)
T ss_pred CCccccCCccCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEE
Confidence 999873 336999988633 23456666667888 999988
No 169
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.19 E-value=5.4e-06 Score=75.49 Aligned_cols=87 Identities=18% Similarity=0.350 Sum_probs=65.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~ 254 (360)
.+++... ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.+
T Consensus 27 ~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~ 102 (294)
T PTZ00338 27 KIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYF 102 (294)
T ss_pred HHHHhcC--CCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccccc
Confidence 3444444 567789999999999999999987 457999999 888876653 4689999999987 56678
Q ss_pred cEEEeccccccCChhHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L 275 (360)
|+|++ +.-++++.+...++|
T Consensus 103 d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 103 DVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred CEEEe-cCCcccCcHHHHHHH
Confidence 98775 555556665555555
No 170
>PLN02823 spermine synthase
Probab=98.17 E-value=6.9e-06 Score=76.00 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=71.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---C-CCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY---I-PPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~---~-p~~D~i~ 258 (360)
...++||.||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|...- . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998666778999999 999887763 47999999998762 2 2599999
Q ss_pred eccccccCC--hh---HHHHHHH-HHHHhccCCCCCcEEEE
Q 018116 259 FKLVFHAFG--DE---DCLKILK-KCREAIAGNGERGKVLI 293 (360)
Q Consensus 259 ~~~~lh~~~--~~---~~~~~L~-~~~~~L~p~~~gG~lli 293 (360)
+-. ...+. .. --..+++ .++++|+| ||.+++
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 742 11110 00 0235777 88999999 776654
No 171
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.16 E-value=8.8e-06 Score=69.73 Aligned_cols=95 Identities=11% Similarity=0.203 Sum_probs=63.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C-CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---P-PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p-~~D~i~~~~~l 263 (360)
...+|||+|||+|.++..++.+. ..+++++|. +.+++.+++ ..+++++.+|+++.. . .||+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998766554 368999999 888776653 357999999987622 2 49999875442
Q ss_pred ccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeee
Q 018116 264 HAFGDEDCLKILKKCRE--AIAGNGERGKVLIMDIV 297 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~e~~ 297 (360)
+. .-...+++.+.+ +|.| ++ +++++..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~---~~-iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLAD---EA-LIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCC---Cc-EEEEEec
Confidence 21 112234454444 3677 44 5555543
No 172
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=5e-06 Score=73.23 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=78.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCCh-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD- 268 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~- 268 (360)
.....++|+|||.|-+.. .+|.+..++.|+ ...+..+++.+.......|+.. +.+ .||..+...++||++.
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 457899999999997642 348889999999 7788888765544667778876 544 6999999999999975
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
....++++++.+.++| ||..+|.-....
T Consensus 120 ~RR~~~l~e~~r~lrp---gg~~lvyvwa~~ 147 (293)
T KOG1331|consen 120 ERRERALEELLRVLRP---GGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCceEEEEehhh
Confidence 4566899999999999 999877665443
No 173
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.13 E-value=1.8e-05 Score=68.08 Aligned_cols=124 Identities=16% Similarity=0.279 Sum_probs=86.7
Q ss_pred EEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--C-ccEEEeccccccCC
Q 018116 199 IVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--P-ADAYFFKLVFHAFG 267 (360)
Q Consensus 199 iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~-~D~i~~~~~lh~~~ 267 (360)
|.||||..|.+.+.|+++...-+++..|+ +..++.|++ .++|+++.+|-++.++ . .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988779999999 888877763 6899999999887543 3 888887664 5
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEE
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
-....+||.+....++. ..+|++ -+ ......++++|.+.||.+++-.
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP-----------------------------~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QP-----------------------------NTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EE-----------------------------SS-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eC-----------------------------CCChHHHHHHHHHCCCEEEEeE
Confidence 66678888888777765 345554 11 1146788999999999987765
Q ss_pred ee--CC-ceeEEEEe
Q 018116 348 NV--FG-LKSLIEVY 359 (360)
Q Consensus 348 ~~--~~-~~~vi~~~ 359 (360)
-+ .+ +.-+|.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 55 23 33355543
No 174
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=0.00014 Score=59.87 Aligned_cols=67 Identities=16% Similarity=0.321 Sum_probs=52.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC--CCccEEEeccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI--PPADAYFFKLV 262 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~--p~~D~i~~~~~ 262 (360)
..-++|||||+|..+..|++.. |+.-+...|+ |.+++...+ ..+++.+..|+.... .+.|+++++--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCC
Confidence 6789999999999999888865 7888999999 888876442 456778888887732 36888877543
No 175
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.11 E-value=1.6e-05 Score=72.92 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC----CCCeEEEeec-hHHHhcCCC------CCCeEE--EeCCCCCC---C-----C-
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF----PGIKCTVLDL-PHAVANMPQ------TENLKY--IAGDMFQY---I-----P- 252 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~ri~~--~~~D~~~~---~-----p- 252 (360)
+...|+|+|||+|.=...|++.+ ...+++.+|+ .+.++.+.. .+.+++ +++|+.+. . +
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 55689999999998877777665 3468999999 666665432 355666 78888552 2 1
Q ss_pred CccEE-EeccccccCChhHHHHHHHHHHH-hccCCCCCcEEEE
Q 018116 253 PADAY-FFKLVFHAFGDEDCLKILKKCRE-AIAGNGERGKVLI 293 (360)
Q Consensus 253 ~~D~i-~~~~~lh~~~~~~~~~~L~~~~~-~L~p~~~gG~lli 293 (360)
...++ ++..++.+++++++..+|+++++ .|+| |+.|+|
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi 195 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI 195 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 25565 44569999999999999999999 9999 777766
No 176
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=1.3e-05 Score=68.08 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=92.3
Q ss_pred hcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC--CeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 192 IFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TE--NLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 192 ~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
..+....++|||||.|.....+..+. --+.+.+|. -.|++.++. .+ .+++..+|-.. ++. ++|+|+.+..+
T Consensus 69 ~kk~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 69 CKKSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred HhhhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh
Confidence 34567899999999999999998874 337888998 788888775 23 34556777544 444 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcc------cCHHHHHHHHH
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKE------RTDEEWKTLFL 337 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~------~t~~e~~~ll~ 337 (360)
|+.++ ...-+.+++.+|+| +|.++- ...-.+. +.+......+.-+-..||.. -...++-.+|.
T Consensus 148 HW~Nd--LPg~m~~ck~~lKP---Dg~Fia-smlggdT-----LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~ 216 (325)
T KOG2940|consen 148 HWTND--LPGSMIQCKLALKP---DGLFIA-SMLGGDT-----LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLT 216 (325)
T ss_pred hhhcc--CchHHHHHHHhcCC---Cccchh-HHhcccc-----HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHh
Confidence 96665 45678899999999 775543 2222221 11111111111111123321 13467888999
Q ss_pred HCCCceeEE
Q 018116 338 DAGFTHYKI 346 (360)
Q Consensus 338 ~aGf~~~~~ 346 (360)
.|||....+
T Consensus 217 rAGF~m~tv 225 (325)
T KOG2940|consen 217 RAGFSMLTV 225 (325)
T ss_pred hcCccccee
Confidence 999985543
No 177
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.07 E-value=1.3e-05 Score=70.82 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=74.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C-------CC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I-------PP 253 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~-------p~ 253 (360)
..+.++||+||+++|.-+..++...| +.+++.+|. ++..+.|++ .++|+++.||..+ + . ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45678999999999999999999874 779999999 777666653 6899999998866 1 1 36
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
||+|++-. ....-...+..+.+.|+| || ++++|.+.
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~---GG-viv~DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV---GG-VIGYDNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC---Ce-EEEEcCCC
Confidence 99998732 344456778888899999 55 55656544
No 178
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.05 E-value=1e-05 Score=82.57 Aligned_cols=97 Identities=12% Similarity=0.152 Sum_probs=71.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---CC-CccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------T-ENLKYIAGDMFQY---IP-PADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~ri~~~~~D~~~~---~p-~~D~i~~~ 260 (360)
..+++|||+|||+|.++..+++. ...+++++|+ +.+++.+++ . ++++++.+|+++. .+ .||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 35689999999999999999985 3346999999 888887764 2 5899999998762 23 69999983
Q ss_pred ccc--c-----c-C-ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 261 LVF--H-----A-F-GDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 261 ~~l--h-----~-~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
--- . . + ....-..+++.+.+.|+| ||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 110 0 0 0 012345688889999999 8877653
No 179
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.05 E-value=3.4e-05 Score=67.46 Aligned_cols=127 Identities=18% Similarity=0.195 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHh-cCCCCCCeE-EEeCCCCC-C---C----CCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVA-NMPQTENLK-YIAGDMFQ-Y---I----PPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~ri~-~~~~D~~~-~---~----p~~D~i~~~~~ 262 (360)
....++||+|||+|.++..+++. +..+++++|. +.++. ..+...++. +...|+.. . . ..+|+.+++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 35679999999999999999986 4568999999 64555 455566654 33335442 1 1 24777776543
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc-------CHHHHHHH
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER-------TDEEWKTL 335 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~-------t~~e~~~l 335 (360)
.+|..+.++|+| |-.++++.+-+.-... .. .-+|-.+ ..+++...
T Consensus 153 ----------~~l~~i~~~l~~---~~~~~L~KPqFE~~~~-----------~~----~~~giv~~~~~~~~~~~~~~~~ 204 (228)
T TIGR00478 153 ----------SILPELDLLLNP---NDLTLLFKPQFEAGRE-----------KK----NKKGVVRDKEAIALALHKVIDK 204 (228)
T ss_pred ----------hHHHHHHHHhCc---CeEEEEcChHhhhcHh-----------hc----CcCCeecCHHHHHHHHHHHHHH
Confidence 358888999998 4455555333221110 00 0012222 45667778
Q ss_pred HHHCCCceeEEEee
Q 018116 336 FLDAGFTHYKITNV 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
+.+.||++..+.+-
T Consensus 205 ~~~~~~~~~~~~~s 218 (228)
T TIGR00478 205 GESPDFQEKKIIFS 218 (228)
T ss_pred HHcCCCeEeeEEEC
Confidence 88889998877655
No 180
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.05 E-value=1.5e-05 Score=71.69 Aligned_cols=96 Identities=17% Similarity=0.284 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-CccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YIP-PADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~p-~~D~i~~ 259 (360)
..++||-||+|.|.++..+++..+--+++.+|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 347999999999999999999988889999999 999988774 4899999999877 334 5999987
Q ss_pred ccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 260 KLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 260 ~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
-..=. .... --..+++.++++|++ +|.++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 43211 0000 024789999999999 7766664
No 181
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.04 E-value=2.6e-05 Score=69.88 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~ 265 (360)
..+-|||||||+|-++.-.+++ ...++..++-.+|.+.|++ .+||.++.|-+.+ +.| ..|++++--.=.-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 4678999999999988766665 3457888888888888774 6899999999987 677 5999987433322
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+-.+...+-.-.++++|+| .|.++
T Consensus 256 L~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC---CCccc
Confidence 3344444444467799999 77765
No 182
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.03 E-value=2.4e-05 Score=74.30 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---C----CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------T-ENLKYIAGDMFQY---I----PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~ri~~~~~D~~~~---~----p~~D~i 257 (360)
.++.+|||+|||+|.++...+.. ...+++++|+ +.+++.+++ . ++++++.+|+++. . ..||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 45789999999999998776643 3458999999 888887764 2 4799999999772 1 259999
Q ss_pred EeccccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++.---..-+. ..-..+++.+.+.|+| ||.|+.+.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 97522110111 1233456678899999 88877654
No 183
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=2.1e-05 Score=65.23 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=55.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIPPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~~~~ 262 (360)
.-.+++|+|+|||||.+++..+-.. -.+++++|+ +++++.+++ ..+|.|.+.|+..-...+|.++++=-
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPP 117 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPP 117 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCC
Confidence 3467899999999999998877653 368999999 999988875 56899999998665557888877543
No 184
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=6.3e-05 Score=65.85 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=52.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC----CCC----CccEEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ----YIP----PADAYF 258 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~----~~p----~~D~i~ 258 (360)
....|||+|||+|..+..++...|.++++++|. +.++..|.+ .+++.++..++.. +.+ .+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345899999999999999999999999999999 666665543 7899988665543 222 488887
Q ss_pred ec
Q 018116 259 FK 260 (360)
Q Consensus 259 ~~ 260 (360)
++
T Consensus 228 sN 229 (328)
T KOG2904|consen 228 SN 229 (328)
T ss_pred cC
Confidence 64
No 185
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.98 E-value=2.3e-05 Score=75.72 Aligned_cols=90 Identities=18% Similarity=0.298 Sum_probs=64.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-----C-C-CccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY-----I-P-PADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~-----~-p-~~D~i~ 258 (360)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++|+.+|+.+. . . .||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999874 48999999 999887764 35899999998641 1 1 489988
Q ss_pred eccccccCChhH-HHHHHHHHHHhccCCCCCcEEEE
Q 018116 259 FKLVFHAFGDED-CLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 259 ~~~~lh~~~~~~-~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+.- |..- ...+++.+.+ ++| ++.+++
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECc-----CCCCCCHHHHHHHHh-cCC---CEEEEE
Confidence 622 1111 2355665554 777 565555
No 186
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.98 E-value=2.8e-05 Score=70.29 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CCCeEE--EeCCCC---CCCCCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ----TENLKY--IAGDMF---QYIPPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~ri~~--~~~D~~---~~~p~~D~i~~~~~ 262 (360)
-.+.+|||+|+|.|..+.+....++.. +++.+|. +.+++.++. ...... ...++. .+.+..|+|+++++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 356799999999999888888888744 6889999 888776543 111110 111121 13445799999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
|-.++++....+++++-+.+. +.|+|+|+-.+..
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred hhcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 999998777888888877654 4899998766553
No 187
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.98 E-value=2.3e-05 Score=72.43 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=52.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I-PPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~-p~~D~i~~~ 260 (360)
+..+|||+|||+|.++..+++. +.+++++|. +.+++.+++ .++++|+.+|+.+. . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4589999999999999999984 579999999 999887764 35799999999652 2 259999875
No 188
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.96 E-value=3.5e-05 Score=70.00 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=69.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CC--CCccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YI--PPADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~--p~~D~i~~~~~l 263 (360)
-..+.|||||||+|-++.--+++. ..++.++|-.++++.+.+ .+.|+++.+.+.+ .+ +..|+|++-+.=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 457899999999999999888875 568999999887776653 5679999998877 34 479999987765
Q ss_pred ccCC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 264 HAFG-DEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 264 h~~~-~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+.+- +.-...+|-.=-++|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 5432 22222334444488999 77654
No 189
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.92 E-value=1.8e-05 Score=70.34 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=72.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CC-CccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---Y-IP-PADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~-~p-~~D~i 257 (360)
+..++||-||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999987766779999999 999887763 5799999999865 2 33 69999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++-..--..+... ...+++.++++|+| ||.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 8732211111111 24789999999999 77766644
No 190
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.89 E-value=2.5e-05 Score=65.96 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=67.2
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHh---cCCC---CCCeEEEeCCCCC-C-CCCccEEEeccccccCCh
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVA---NMPQ---TENLKYIAGDMFQ-Y-IPPADAYFFKLVFHAFGD 268 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~---~a~~---~~ri~~~~~D~~~-~-~p~~D~i~~~~~lh~~~~ 268 (360)
+++|||+|.|.-++.++=.+|+.+++.+|. ..=+. .+.. -++++++++++.+ . ...||+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 43322 2221 5689999999877 2 33699999987642
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...++.-+...+++ ||+++..-
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 34678888888999 89888854
No 191
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.89 E-value=1.9e-05 Score=69.94 Aligned_cols=137 Identities=12% Similarity=0.177 Sum_probs=82.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCC----C------------------------------C
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMP----Q------------------------------T 237 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~----~------------------------------~ 237 (360)
.++.++||||||.--+ .++...+.. +++..|. +.-.+..+ . .
T Consensus 55 ~~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3567999999998544 233333334 4777887 54443111 0 1
Q ss_pred CCeE-EEeCCCCCC--C------CC-ccEEEeccccccCC--hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch
Q 018116 238 ENLK-YIAGDMFQY--I------PP-ADAYFFKLVFHAFG--DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH 305 (360)
Q Consensus 238 ~ri~-~~~~D~~~~--~------p~-~D~i~~~~~lh~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~ 305 (360)
..|+ ++..|+.++ . |. ||+|++..+|.... .++-.+.++++.++|+| ||.|++...........
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~~t~Y~v- 208 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLGSTYYMV- 208 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-SEEEE-
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcCceeEEE-
Confidence 1243 667888772 1 33 99999999998754 45677899999999999 99999877643221000
Q ss_pred hhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEe
Q 018116 306 QVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 306 ~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
. -..+..-..+.+.+++.++++||.+.+...
T Consensus 209 ---------G---~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 209 ---------G---GHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ---------T---TEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ---------C---CEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 0 000112234899999999999999888875
No 192
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.89 E-value=3.4e-05 Score=67.43 Aligned_cols=74 Identities=23% Similarity=0.446 Sum_probs=62.6
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP 252 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p 252 (360)
.+.++.+.+ ..+...||+||.|+|.++..++++ +.+++.+++ |.++....+ +...+++.+|+++ ++|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 355566666 788999999999999999999998 778999999 888776543 5789999999998 788
Q ss_pred CccEEEe
Q 018116 253 PADAYFF 259 (360)
Q Consensus 253 ~~D~i~~ 259 (360)
-||+++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 8999886
No 193
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.87 E-value=0.00026 Score=60.62 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=91.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCC--CccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ---YIP--PADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~---~~p--~~D~i 257 (360)
.+++.+|||.-.|-|.+++..+++ +. .++-++- |.+++.|.- ..+|+++.||..+ +++ +||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 357899999999999999998887 55 7888888 999988763 4579999999977 455 49997
Q ss_pred EeccccccCC------hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 258 FFKLVFHAFG------DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 258 ~~~~~lh~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
+ |+-| .=-...+-++++|.|+| ||+++-....+... +. |+. -+..
T Consensus 210 i-----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~Pg~r-----------yr---------G~d-~~~g 260 (287)
T COG2521 210 I-----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNPGKR-----------YR---------GLD-LPKG 260 (287)
T ss_pred e-----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCCCcc-----------cc---------cCC-hhHH
Confidence 6 3221 11245789999999999 99987644222111 00 110 3457
Q ss_pred HHHHHHHCCCceeEEEeeCC
Q 018116 332 WKTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~~~ 351 (360)
..+.|+++||.+++......
T Consensus 261 Va~RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 261 VAERLRRVGFEVVKKVREAL 280 (287)
T ss_pred HHHHHHhcCceeeeeehhcc
Confidence 77899999999777665533
No 194
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.86 E-value=3.9e-05 Score=75.32 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-C-----CCCeEEEeCCCCC---CCC--CccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-Q-----TENLKYIAGDMFQ---YIP--PADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~-----~~ri~~~~~D~~~---~~p--~~D~i~~~~~ 262 (360)
....+||||||.|.++..+++.+|+..++|+|. ...+..+. . -.++.++++|+.. .++ +.|-|++.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F- 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF- 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC-
Confidence 467899999999999999999999999999999 54433322 1 4678888887642 244 477777643
Q ss_pred cccCChhH-----------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGDED-----------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~~~-----------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
||+. ...+|+.+++.|+| ||.|.+..
T Consensus 426 ----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 426 ----PDPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred ----CCCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 3332 24689999999999 99988744
No 195
>PRK00536 speE spermidine synthase; Provisional
Probab=97.84 E-value=8.9e-05 Score=66.03 Aligned_cols=87 Identities=8% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCC-CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQYI-PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~~-p~~D~i~~~~ 261 (360)
..+++||=||||-|..+..+++. |. +++.+|+ +.+++.+++ .+|++++.. +.+.. ..||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46799999999999999999975 54 9999999 888877664 689988862 32222 4699999753
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
. .+ ....+.++++|+| ||.++.
T Consensus 148 ~----~~---~~fy~~~~~~L~~---~Gi~v~ 169 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE---DGVFIS 169 (262)
T ss_pred C----CC---hHHHHHHHHhcCC---CcEEEE
Confidence 2 22 3678899999999 776655
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.84 E-value=4.5e-05 Score=69.14 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=61.8
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC--C-C-
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ--Y-I- 251 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~--~-~- 251 (360)
...+++.+. ..++..+||.+||.|+.+..+++.+| +.+++++|. +.+++.+++ .+|++++.+|+.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 355666665 45678999999999999999999986 789999999 999988764 3689999999875 1 1
Q ss_pred ---CCccEEEec
Q 018116 252 ---PPADAYFFK 260 (360)
Q Consensus 252 ---p~~D~i~~~ 260 (360)
+.+|.|++-
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 158888773
No 197
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.75 E-value=1.7e-05 Score=75.30 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=66.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEe---ec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVL---DL-PHAVANMPQTENLKYIAGDMFQ---YIP--PADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh 264 (360)
.....+||||||+|.++..|+.+ ++..+.+ |. +..++.|.+. .|.-+.+-+-+ |+| .||+|.++.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhcccccc
Confidence 45678999999999999999987 3322221 22 2333333221 12222222211 566 499999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
.|...+- .+|-++-|+|+| ||.+++..+-..
T Consensus 193 ~W~~~~g-~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDG-FLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred cchhccc-ceeehhhhhhcc---CceEEecCCccc
Confidence 9987653 589999999999 999888665444
No 198
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.74 E-value=6.8e-05 Score=63.89 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=63.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---CC-ccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I---PP-ADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~---p~-~D~i~~ 259 (360)
.+.++||++||+|.++..++.+.. .+++.+|. +.+++.+++ .++++++.+|+++. . .. +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 467999999999999999999854 37999999 777766553 35789999999551 1 12 677766
Q ss_pred ccccccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeeec
Q 018116 260 KLVFHAFGDEDCLKILKKCR--EAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~e~~~ 298 (360)
-=-.. . ....+++..+. .+|++ +.++|+|...
T Consensus 128 DPPy~-~--~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFF-N--GALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCC-C--CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 32221 1 11233444443 35666 5577777544
No 199
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.72 E-value=0.00011 Score=69.67 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=61.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CCccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I-PPADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~-p~~D~i~~~~~l 263 (360)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.+++ .++++|+.+|+.+. . ..||+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4579999999999999999864 568999999 888887764 34799999998652 2 359998874211
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
-.+ ..++++.+.+ ++| ++.+++
T Consensus 311 ~G~----~~~~l~~l~~-~~p---~~ivyv 332 (374)
T TIGR02085 311 RGI----GKELCDYLSQ-MAP---KFILYS 332 (374)
T ss_pred CCC----cHHHHHHHHh-cCC---CeEEEE
Confidence 111 1244555543 677 555554
No 200
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.00011 Score=63.12 Aligned_cols=119 Identities=21% Similarity=0.261 Sum_probs=82.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHH---HhcCCC---CCCeEEEeCCCCCC--CCC-ccEEEecccccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHA---VANMPQ---TENLKYIAGDMFQY--IPP-ADAYFFKLVFHA 265 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~ri~~~~~D~~~~--~p~-~D~i~~~~~lh~ 265 (360)
..+++|||.|.|.-++-++=.+|+.+++.+|. ..= ++.+.. -++++++++.+++- .+. ||+|+++.+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999999999999999997 433 333322 67899999988762 235 99999876532
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
...++.-+...+++ ||+++..-.. . ++. ...+.+......|+.+..
T Consensus 147 -----L~~l~e~~~pllk~---~g~~~~~k~~--------------~-----------~~~-e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV---GGGFLAYKGL--------------A-----------GKD-ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc---CCcchhhhHH--------------h-----------hhh-hHHHHHHHHHhhcCcEEE
Confidence 33456666677787 7776541110 0 000 234555666777888888
Q ss_pred EEee
Q 018116 346 ITNV 349 (360)
Q Consensus 346 ~~~~ 349 (360)
+...
T Consensus 193 ~~~~ 196 (215)
T COG0357 193 VFSL 196 (215)
T ss_pred EEEe
Confidence 8766
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00028 Score=62.45 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=64.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC---
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPP--- 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~--- 253 (360)
+.+++... ..+...|+|||+|.|.++..|+++ ..+++++++ +.+++..++ .++++++.+|+.+ ++++
T Consensus 20 ~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 20 DKIVEAAN--ISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 44455554 556789999999999999999998 456888888 766665543 6899999999988 6773
Q ss_pred ccEEEeccccccCChhHHHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILK 276 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~ 276 (360)
++.|+ .|.=++.+.+-..++|.
T Consensus 96 ~~~vV-aNlPY~Isspii~kll~ 117 (259)
T COG0030 96 PYKVV-ANLPYNISSPILFKLLE 117 (259)
T ss_pred CCEEE-EcCCCcccHHHHHHHHh
Confidence 45544 55556666654444443
No 202
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.59 E-value=8.7e-05 Score=62.05 Aligned_cols=100 Identities=15% Similarity=0.278 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCCC-ccEEEec
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQYIPP-ADAYFFK 260 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~~~p~-~D~i~~~ 260 (360)
.-.+.|||||-|.++..|+..||+.-..|+++ -.+.+..++ ..++.+...+.+.-.|+ |.--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999999999888 555443221 45677777776664443 2222223
Q ss_pred cccccCChhH-----------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 261 LVFHAFGDED-----------CLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 261 ~~lh~~~~~~-----------~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
-.++.++|+. ...++.+..=+|++ ||.++.+.-+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeHH
Confidence 3333344433 23577788888999 89888766543
No 203
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.55 E-value=0.0027 Score=56.68 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=91.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHH-------hc---CC----------------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAV-------AN---MP---------------------------- 235 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-------~~---a~---------------------------- 235 (360)
...+||-=|||-|.++-.++.. +..+.+.+. -.|+ .. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999998 667777776 3332 11 00
Q ss_pred --------CCCCeEEEeCCCCC--CCC----CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 236 --------QTENLKYIAGDMFQ--YIP----PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 236 --------~~~ri~~~~~D~~~--~~p----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
...+++...|||.+ ..+ .||+|+..+.+- +-+.+...|+.|+++|+| ||.+|=+-+..-..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPLLYHF 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCccccC
Confidence 03578899999987 223 599998876654 455688999999999999 88554333222111
Q ss_pred CcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEe
Q 018116 302 EDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 302 ~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
.. .. ......-+.+.+|+.++.++.||++++...
T Consensus 209 ~~------------~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EP------------MS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CC------------CC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 10 00 000112466999999999999999877655
No 204
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.50 E-value=0.00071 Score=61.94 Aligned_cols=128 Identities=14% Similarity=0.205 Sum_probs=88.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCC--C-CccEEEeccccccCChh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYI--P-PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~--p-~~D~i~~~~~lh~~~~~ 269 (360)
+.++.++|||||++|+++..++++ +.+++++|..++.......++|....+|.+... + .+|.+++-.+-. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P- 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P- 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence 357889999999999999999998 679999999777777777899999999988733 2 599988755432 2
Q ss_pred HHHHHHHHHHHhccCCCCC-cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc-eeEEE
Q 018116 270 DCLKILKKCREAIAGNGER-GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT-HYKIT 347 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~-~~~~~ 347 (360)
.++.+-+.++|.. | -+-.|+..-.+-..... . . ....+.+.+.|.++|.. .+++.
T Consensus 283 --~rva~lm~~Wl~~---g~cr~aIfnLKlpmk~r~~---~---v------------~~~l~~i~~~l~~~g~~~~~~~k 339 (357)
T PRK11760 283 --ARVAELMAQWLVN---GWCREAIFNLKLPMKKRYE---E---V------------RQCLELIEEQLDENGINAQIQAK 339 (357)
T ss_pred --HHHHHHHHHHHhc---CcccEEEEEEEcCCCCCHH---H---H------------HHHHHHHHHHHHHcCCccceeee
Confidence 3567888888986 3 24455555443322210 0 0 00234466777788873 44555
Q ss_pred ee
Q 018116 348 NV 349 (360)
Q Consensus 348 ~~ 349 (360)
++
T Consensus 340 hL 341 (357)
T PRK11760 340 QL 341 (357)
T ss_pred ee
Confidence 55
No 205
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.47 E-value=0.00039 Score=65.74 Aligned_cols=90 Identities=20% Similarity=0.126 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--C-CCCccEEEecccccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ--Y-IPPADAYFFKLVFHA 265 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~--~-~p~~D~i~~~~~lh~ 265 (360)
..+|||++||+|.+++.++...+..+++++|. +.+++.+++ .+++++..+|... . ...||+|++- ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD-P~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID-PF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC-CC--
Confidence 46899999999999999998877668999999 888887764 3456788898865 2 2359999873 21
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.. ...+|..+.+.+++ ||.|++.
T Consensus 135 -Gs--~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence 11 23567786777888 8888887
No 206
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0011 Score=56.51 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=74.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeechHHHhcCCCCCCeEEEeCCCCCC-C--------C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDLPHAVANMPQTENLKYIAGDMFQY-I--------P 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~-~--------p 252 (360)
.++.+++. .+.+..+|+|+|+-.|++++.+++... +.+++++|+.++-... .|.++.+|+..+ . +
T Consensus 34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~----~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP----GVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC----CceEEeeeccCccHHHHHHHHcC
Confidence 45566663 568899999999999999999888764 4569999985554443 399999999873 1 2
Q ss_pred --CccEEEe---ccccccCCh------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 --PADAYFF---KLVFHAFGD------EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 --~~D~i~~---~~~lh~~~~------~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+|+|++ .++--+++. .-+...+.-+...|+| ||.+++-..
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~f 160 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVF 160 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEE
Confidence 2699885 222222222 2244566677789999 888877544
No 207
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.44 E-value=4.2e-05 Score=64.05 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=84.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC-CCCCCCCCccEEEeccccccCChhHH
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAG-DMFQYIPPADAYFFKLVFHAFGDEDC 271 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~-D~~~~~p~~D~i~~~~~lh~~~~~~~ 271 (360)
....++||+|+|.|..+..++..+.. +...++ ..|....++ .+.++... +..+.--++|+|.|.++|.-..++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 45689999999999999988877653 444455 455555543 12222211 111111159999999998654443
Q ss_pred HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc--CHHHHHHHHHHCCCceeEEEee
Q 018116 272 LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER--TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 272 ~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~--t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
-++|+.++.+|+|. .|++++.-..+-......+..-...-.|-.. ..+|+.+ ....+-++|+.+||.+.....+
T Consensus 186 ~kLL~Di~~vl~ps--ngrvivaLVLP~~hYVE~N~~g~~~rPdn~L--e~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPS--NGRVIVALVLPYMHYVETNTSGLPLRPDNLL--ENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhccC--CCcEEEEEEecccceeecCCCCCcCCchHHH--HhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 58999999999993 6887765433221110000000000001011 1234433 2345678999999998776555
Q ss_pred C
Q 018116 350 F 350 (360)
Q Consensus 350 ~ 350 (360)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 3
No 208
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.37 E-value=0.00028 Score=60.33 Aligned_cols=90 Identities=21% Similarity=0.324 Sum_probs=64.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC--CCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI--PPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~--p~~D~i~~~~~ 262 (360)
..++.+|+|.-||.|.+++.+++..+..+++.+|+ |.+++.+++ .++|....+|..+-. ..+|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 35678999999999999999999777889999999 888876653 678999999987732 3599888854
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEE
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
|. .+..+|..+.+++++ ||.+
T Consensus 178 ----p~-~~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 178 ----PE-SSLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp ----TS-SGGGGHHHHHHHEEE---EEEE
T ss_pred ----hH-HHHHHHHHHHHHhcC---CcEE
Confidence 22 234678889899998 5543
No 209
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.36 E-value=0.00056 Score=55.34 Aligned_cols=93 Identities=19% Similarity=0.320 Sum_probs=63.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC--CCCccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQY--IPPADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~--~p~~D~ 256 (360)
..+..+|+|+|||.|.++..++.. .++++++++|. ++.++.+.. ..++++..+++... ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 367889999999999999999982 27899999999 777665542 35677777766542 235777
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++.-|.--.+++ .+|+...+ | +-+.+++-
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~---~~~~l~~v 131 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---P---NARFLVLV 131 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---c---CCCEEEEc
Confidence 776555444444 45666654 4 45555443
No 210
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.31 E-value=0.00044 Score=57.20 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=73.5
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCCccEEEeccccccCCh
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGD 268 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p~~D~i~~~~~lh~~~~ 268 (360)
..+.|+|+|+|-++.-.++. .-+++.++. |...+.+.+ .++++++.+|..+ .+..+|+|+|-..=--+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57899999999988766665 568999999 888777764 5789999999988 6878999987543222234
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+..+.+++.+-+.|+- ++.++=.+...
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v~~ 138 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEVRI 138 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHHhh
Confidence 4557889999998987 77776544433
No 211
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.31 E-value=0.0078 Score=51.49 Aligned_cols=87 Identities=16% Similarity=0.254 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP---PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p---~~D~i~~~~~ 262 (360)
+...++.||||..|.+.+.+.+.++...++..|. +..++.|.. .++++...+|-+.++. +.|+++...
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG- 93 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG- 93 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC-
Confidence 3455699999999999999999999999999998 766665542 7899999999987543 489987765
Q ss_pred cccCChhHHHHHHHHHHHhccC
Q 018116 263 FHAFGDEDCLKILKKCREAIAG 284 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p 284 (360)
+.-.-...+|.+-.+-|+.
T Consensus 94 ---MGG~lI~~ILee~~~~l~~ 112 (226)
T COG2384 94 ---MGGTLIREILEEGKEKLKG 112 (226)
T ss_pred ---CcHHHHHHHHHHhhhhhcC
Confidence 3555677888888887763
No 212
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.31 E-value=0.00013 Score=60.03 Aligned_cols=62 Identities=23% Similarity=0.527 Sum_probs=46.9
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC--C-ccEEEec
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IP--P-ADAYFFK 260 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p--~-~D~i~~~ 260 (360)
..|+|+-||.|+.++.+++.+. +++++|+ |..++.++. .++|+|+++|+++- .. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999954 7999999 888877764 67999999999872 22 2 7999873
No 213
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.28 E-value=0.0015 Score=54.66 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=70.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIPPADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~ 266 (360)
.-.+++|||.|.|+|..+++-++.- ...++..|+ |..+..++- .-.|.+...|...+.+.+|++++..+++.-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 3457899999999999998877662 335666677 555544432 456778888876655579999999998754
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
+ ...+++. ....|+.+ |..++|.++-++.-
T Consensus 156 ~--~a~~l~~-~~~~l~~~--g~~vlvgdp~R~~l 185 (218)
T COG3897 156 T--EADRLIP-WKDRLAEA--GAAVLVGDPGRAYL 185 (218)
T ss_pred h--HHHHHHH-HHHHHHhC--CCEEEEeCCCCCCC
Confidence 4 4456676 44444431 77888877766553
No 214
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.27 E-value=0.00036 Score=59.03 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=58.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------C----CCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAGDMFQY---------I----PPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~---------~----p~~D~i~~~ 260 (360)
...++||+||++|+++..++++. +..+++++|+..+.. ...+.++.+|+.++ . ..+|+|++=
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 45899999999999999999987 678999999943311 23444445554331 1 259998874
Q ss_pred ccc---cc------CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 261 LVF---HA------FGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 261 ~~l---h~------~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
... .+ ..-+-+...|.-+.+.|+| ||.+++--
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~ 139 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV 139 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence 311 11 1112234455555677899 88777633
No 215
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.25 E-value=0.00016 Score=47.66 Aligned_cols=46 Identities=33% Similarity=0.564 Sum_probs=40.2
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
+.|++.|..++++.|+.|||+++|+ +..-+.|+|..|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence 5678888876677899999999999 468999999999999999986
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.23 E-value=0.0011 Score=59.62 Aligned_cols=91 Identities=14% Similarity=0.255 Sum_probs=63.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC---
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPP--- 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~--- 253 (360)
+.+++.++ ..+...|+|||+|.|.++..|++.. .++++++. +...+..++ .++++++.+|+.+ +.+.
T Consensus 20 ~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 20 DKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence 45566665 5688999999999999999999986 78999998 777665543 6899999999987 3332
Q ss_pred -ccEEEeccccccCChhHHHHHHHHHHHh
Q 018116 254 -ADAYFFKLVFHAFGDEDCLKILKKCREA 281 (360)
Q Consensus 254 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~ 281 (360)
-.+.+..+.=++.+. .++.++...
T Consensus 96 ~~~~~vv~NlPy~is~----~il~~ll~~ 120 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISS----PILRKLLEL 120 (262)
T ss_dssp SSEEEEEEEETGTGHH----HHHHHHHHH
T ss_pred CCceEEEEEecccchH----HHHHHHhhc
Confidence 334444454444443 455555553
No 217
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.23 E-value=0.0012 Score=59.15 Aligned_cols=95 Identities=17% Similarity=0.311 Sum_probs=56.9
Q ss_pred CCCEEEEeCCCCch-HHHHHHHH-CCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCCCccEEEec
Q 018116 195 GLGSIVDVGGGNGG-FSKIISEA-FPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ---YIPPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~-~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~---~~p~~D~i~~~ 260 (360)
.+.+|+=||||.=- .++.+++. .++..++++|+ +.+.+.+++ ..+++|+++|..+ +...||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 35699999999654 55666654 36889999999 888876653 6899999999865 24579999876
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.... .+.++..++|.++.+.|+| |..|++
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~ 228 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVV 228 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEE
Confidence 6543 4555667999999999999 777666
No 218
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.20 E-value=0.00036 Score=65.46 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=43.3
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ 249 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~ 249 (360)
.++||++||+|.++..+++... +++++|. +++++.+++ .++++|+.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 8999999 889887764 3478999999865
No 219
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00017 Score=65.17 Aligned_cols=102 Identities=23% Similarity=0.395 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCe-EEEeechHHHhcCC----C---CCCeEEEeCCCCC---CCCCccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIK-CTVLDLPHAVANMP----Q---TENLKYIAGDMFQ---YIPPADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~----~---~~ri~~~~~D~~~---~~p~~D~i~~~~~l 263 (360)
..++|||||.|.|.-+.++-.-+|+++ +++++....+.... . .........|+.. ++|..|.|.+..++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 357899999999998888888899885 66666633332211 1 2233344445433 45655555554444
Q ss_pred ccC----ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 264 HAF----GDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 264 h~~----~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
|.+ ........++++-..+.| ||.|+|+|.-.+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp 229 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP 229 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence 443 333445589999999999 999999996544
No 220
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.18 E-value=0.0069 Score=54.32 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=94.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC------CC-----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP---------QTENLKYIAGDMFQYI------PP----- 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~ri~~~~~D~~~~~------p~----- 253 (360)
.+...||.+|||-=.....+... +++++.=+|.|++++.-+ ...+..++..|+...+ .+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34567999999988776665321 357888888888775322 2578999999987422 12
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhh-HhHhhhhhh--hcccCCcccCHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE-AKLLGDTLM--SVSVDGKERTDE 330 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~d~~~--~~~~~g~~~t~~ 330 (360)
--++++-.++.+++.+++.++|+.+.+...| |..+++|.+.+-.... ... ......... ....--...+.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEW--RAGMRAPVYHAARGVDGSGLVFGIDRA 232 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhH--HHHHHHHHHHhhhcccccccccCCChh
Confidence 3367788899999999999999999998877 4556677765521111 000 001110000 000001123689
Q ss_pred HHHHHHHHCCCceeEE
Q 018116 331 EWKTLFLDAGFTHYKI 346 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~ 346 (360)
++.++|++.||.....
T Consensus 233 ~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 233 DVAEWLAERGWRASEH 248 (260)
T ss_pred hHHHHHHHCCCeeecC
Confidence 9999999999998765
No 221
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00022 Score=57.53 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCC----C-CccEEEe
Q 018116 196 LGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQYI----P-PADAYFF 259 (360)
Q Consensus 196 ~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~~----p-~~D~i~~ 259 (360)
+.+||++|+| +|..+..++..-|...+...|- ...++..++ ..++.....+....+ . .||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 4789999999 4555566676778888999997 666655442 344444444444421 2 5999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..++. =++....+.+.|+..|+| .|+-+++.
T Consensus 110 ADClF--fdE~h~sLvdtIk~lL~p---~g~Al~fs 140 (201)
T KOG3201|consen 110 ADCLF--FDEHHESLVDTIKSLLRP---SGRALLFS 140 (201)
T ss_pred ccchh--HHHHHHHHHHHHHHHhCc---ccceeEec
Confidence 99885 455567889999999999 67755543
No 222
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.14 E-value=0.0027 Score=57.98 Aligned_cols=92 Identities=20% Similarity=0.401 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCC----CCc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQYI----PPA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~~~----p~~ 254 (360)
++..++|-+|||.|..+..+.+ +|+ -+++.+|+ |.|++.+++ .+|++++..|.++.. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4668999999999999988885 684 47999999 999998872 689999999998832 259
Q ss_pred cEEEeccccccCChhH--------HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 255 DAYFFKLVFHAFGDED--------CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~--------~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
|+++. +++|+. ...+-+-+++.|++ +|.+++.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 99876 344432 23566777888998 7877763
No 223
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.13 E-value=0.00043 Score=65.20 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=43.1
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ 249 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~ 249 (360)
.++||++||+|.++..+++... +++++|. +.+++.+++ .++++|+.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998753 8999999 888887764 3479999999855
No 224
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.11 E-value=0.004 Score=50.39 Aligned_cols=96 Identities=16% Similarity=0.285 Sum_probs=65.5
Q ss_pred EEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---eEEEeCCCCC---CCC---CccEEEeccccc
Q 018116 199 IVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ-T--EN---LKYIAGDMFQ---YIP---PADAYFFKLVFH 264 (360)
Q Consensus 199 iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~r---i~~~~~D~~~---~~p---~~D~i~~~~~lh 264 (360)
++|+|||+|... .+....+. ..++++|. +.++..... . .. +.+...|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 34443333 47888998 766665332 1 11 5778777654 333 49999 544444
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
++.+ ....++++.+.++| +|.+++........
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~~ 161 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDGL 161 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCCC
Confidence 4443 46789999999999 89888888765543
No 225
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.026 Score=47.59 Aligned_cols=141 Identities=11% Similarity=0.075 Sum_probs=96.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCCC------CCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PH----AVANMPQTENLKYIAGDMFQYI------PPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~ri~~~~~D~~~~~------p~~D~i~~~~ 261 (360)
++++.+||=+|+.+|....+++.-.++-.+.+++. +. .++.+.+.+++--+.+|...|. +..|+|+. .
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-D 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-D 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE-e
Confidence 78899999999999999999999888777888887 43 3455666778888889987753 36898874 2
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+- .++++.-+..++..-|++ ||.+++.--...-....+ ... -..+-.+-|++.||
T Consensus 153 VA---Qp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~d---p~~----------------vf~~ev~kL~~~~f 207 (231)
T COG1889 153 VA---QPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTAD---PEE----------------VFKDEVEKLEEGGF 207 (231)
T ss_pred cC---CchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCC---HHH----------------HHHHHHHHHHhcCc
Confidence 22 234556678888999999 887776544433322221 000 11222355678899
Q ss_pred ceeEEEeeCC---ceeEEEEe
Q 018116 342 THYKITNVFG---LKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~~~---~~~vi~~~ 359 (360)
++.++..+.. .+.+|.++
T Consensus 208 ~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 208 EILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eeeEEeccCCcccceEEEEEe
Confidence 9999988844 46666654
No 226
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.04 E-value=0.0077 Score=50.33 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=85.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhc-----------CCC--CCCeEEEeCCCCC-CCC-CccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVAN-----------MPQ--TENLKYIAGDMFQ-YIP-PADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~-----------a~~--~~ri~~~~~D~~~-~~p-~~D~ 256 (360)
++++.+|+|+=.|.|.+..-++... |.-++..+-..+.... +++ ..+++.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 7899999999999999998887753 3333333221111111 111 3445555444433 222 4777
Q ss_pred EEeccccccC-----ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 257 YFFKLVFHAF-----GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 257 i~~~~~lh~~-----~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
++....-|++ ....+.++-+.++++||| ||.++|.|.......... .... + ...+..-
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~~------~-----~ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTIT------L-----HRIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhhh------h-----cccChHH
Confidence 6664444433 244567899999999999 999999998776644331 1101 0 1235667
Q ss_pred HHHHHHHCCCceeEEEee
Q 018116 332 WKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~ 349 (360)
..+..+.+||+..--..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 778888999986654443
No 227
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.98 E-value=0.00065 Score=63.44 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=80.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
.+...++|+|||.|.....+. .|..+++++++. +..+..... .+.-.++.+|+.+ +++ .||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~-~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIA-VFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHH-HhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 345589999999999887666 456788999998 655544432 4556668888877 565 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKE 302 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~ 302 (360)
..|.++. ...+++++++++| ||.+++.+.+.....
T Consensus 188 ~~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~~~ 222 (364)
T KOG1269|consen 188 VCHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTAKL 222 (364)
T ss_pred cccCCcH--HHHHHHHhcccCC---CceEEeHHHHHhhhc
Confidence 9999986 4679999999999 999999888776543
No 228
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0007 Score=53.65 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=51.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC---CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP---PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p---~~D~i~~~~~l 263 (360)
-++++++|+|||.|-++++.. .+..-.++|+|+ |++++.++. .-++++.+.|+.+..+ -||.++++--+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 467899999999999984443 233446899999 999998875 4567888888877433 38888875544
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.91 E-value=0.014 Score=50.23 Aligned_cols=140 Identities=13% Similarity=0.095 Sum_probs=89.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCCC------CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PH----AVANMPQTENLKYIAGDMFQYI------PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~ri~~~~~D~~~~~------p~~D~i~~~ 260 (360)
+.++.+||-+|..+|.+..+++.-- |.-.+.+++. +. .+..+++..+|--+-.|...|. +..|+|+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~- 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ- 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE-
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe-
Confidence 6788999999999999999999864 4778888888 53 3445555788888889988752 36998875
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.+-+ ++++.-++.++...|++ ||.+++.=-...-+...+ ..-...+=.+.|++.|
T Consensus 150 DVaQ---p~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~-------------------p~~vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 150 DVAQ---PDQARIAALNARHFLKP---GGHLIISIKARSIDSTAD-------------------PEEVFAEEVKKLKEEG 204 (229)
T ss_dssp E-SS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSS-------------------HHHHHHHHHHHHHCTT
T ss_pred cCCC---hHHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCC-------------------HHHHHHHHHHHHHHcC
Confidence 3332 34566678889899999 898887543221111100 0001122345667889
Q ss_pred CceeEEEeeCC---ceeEEEE
Q 018116 341 FTHYKITNVFG---LKSLIEV 358 (360)
Q Consensus 341 f~~~~~~~~~~---~~~vi~~ 358 (360)
|++.+...+.. .+.++.+
T Consensus 205 ~~~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 205 FKPLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp CEEEEEEE-TTTSTTEEEEEE
T ss_pred CChheEeccCCCCCCcEEEEE
Confidence 99999988844 3555544
No 230
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.023 Score=50.14 Aligned_cols=105 Identities=14% Similarity=0.225 Sum_probs=73.7
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-IP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~p 252 (360)
..++..++ ..++.+||+-|.|+|+++-++++.- |.-++.-+|. ..-.+.|.+ .+++.+.+.|+... +.
T Consensus 95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 34556666 7899999999999999999999975 7778888888 444444442 78999999999772 32
Q ss_pred ----CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 253 ----PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 253 ----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.+|.|++ ++|.+. ..+=.++++|+-. ||++.-+.++.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~--g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILKDE--GGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhhhc--CceEEeccHHH
Confidence 4898876 344432 2244555567751 56777655543
No 231
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.81 E-value=0.0019 Score=47.76 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=48.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
-+.|++.|...+++.|+.|||+.+|+ +...+.|.|+.|...|++.+... ++.|++++..
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-----~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-----NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-----CCceeecHHH
Confidence 35677788764368999999999999 56899999999999999998742 4779998754
No 232
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.78 E-value=0.0047 Score=56.25 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=60.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--C--
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-Y--I-- 251 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~--~-- 251 (360)
+.+++.+. ..++..++|.-+|.|+.+..+++++|+.+++++|. +.+++.+++ .+|+.++.+++.+ . .
T Consensus 10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 45666665 45678999999999999999999988899999999 988887764 4689999998865 1 1
Q ss_pred ---CCccEEEec
Q 018116 252 ---PPADAYFFK 260 (360)
Q Consensus 252 ---p~~D~i~~~ 260 (360)
..+|.|++-
T Consensus 88 ~~~~~vDgIl~D 99 (305)
T TIGR00006 88 LLVTKIDGILVD 99 (305)
T ss_pred cCCCcccEEEEe
Confidence 247777663
No 233
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.72 E-value=0.01 Score=51.07 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=72.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCCCC---------CCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMP-------QTENLKYIAGDMFQYI---------PPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~-------~~~ri~~~~~D~~~~~---------p~~ 254 (360)
.-+.++.+|||.=+|.-+.+++.+.| +-+++.+|+ +...+.+. -...|+++.++..+.. ..|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 44679999999999999999999997 568999998 65554443 3788999999886621 249
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+++. -+|-+. -.....++.+.+++ || ++++|.+.
T Consensus 151 DfaFv----DadK~n-Y~~y~e~~l~Llr~---GG-vi~~DNvl 185 (237)
T KOG1663|consen 151 DFAFV----DADKDN-YSNYYERLLRLLRV---GG-VIVVDNVL 185 (237)
T ss_pred eEEEE----ccchHH-HHHHHHHHHhhccc---cc-EEEEeccc
Confidence 99885 334443 44788999999999 55 55555543
No 234
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.71 E-value=0.011 Score=57.43 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=72.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC-CccEEEe-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---YIP-PADAYFF- 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~~p-~~D~i~~- 259 (360)
..++.+|||+++|.|+=+..++....+ ..++..|+ +.-++.+++ ..++.+...|... ..+ .||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 357789999999999999999998753 57899998 665544432 4567888888654 233 4999984
Q ss_pred ---cc--cc-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 260 ---KL--VF-------HAFGDEDC-------LKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 260 ---~~--~l-------h~~~~~~~-------~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+. ++ ..|+.++. .+||+++.+.|+| ||+|+-.....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCC
Confidence 31 22 23333322 5799999999999 88775544433
No 235
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.70 E-value=0.0051 Score=51.91 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=64.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCeEEEeC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIK---------CTVLDL-PHAVANMPQ-------TENLKYIAG 245 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~ri~~~~~ 245 (360)
..++.... +.+...|+|-=||+|.+++..+...++.. +++.|+ +.+++.++. ...+.+...
T Consensus 18 ~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 18 AALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 33444444 45678999999999999988877766666 999999 888876653 567899999
Q ss_pred CCCC-CC-C-CccEEEecccccc-CCh-hHH----HHHHHHHHHhccC
Q 018116 246 DMFQ-YI-P-PADAYFFKLVFHA-FGD-EDC----LKILKKCREAIAG 284 (360)
Q Consensus 246 D~~~-~~-p-~~D~i~~~~~lh~-~~~-~~~----~~~L~~~~~~L~p 284 (360)
|+.+ +. + .+|+|++.--.-. ... .+. .++++.+++.+++
T Consensus 96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9987 52 3 4999987543322 122 122 3456777787876
No 236
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.69 E-value=0.0013 Score=44.77 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 32 AMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 32 ~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.+|.--.++.|+..|.. ++|.|+.|||+.+|+ +...+.+.|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLAS-NGPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 455666678888899943 389999999999999 4688999999999999999875
No 237
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.037 Score=49.85 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=87.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec------hHHH-------------------------hcCC--------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL------PHAV-------------------------ANMP-------- 235 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~-------------------------~~a~-------- 235 (360)
...+||-=|||.|.++..|+...+.+++-=+.. .-++ ++.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 357899999999999999998876555310000 0001 0000
Q ss_pred ------CCCCeEEEeCCCCC--CCC----CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCc
Q 018116 236 ------QTENLKYIAGDMFQ--YIP----PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKED 303 (360)
Q Consensus 236 ------~~~ri~~~~~D~~~--~~p----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~ 303 (360)
..+..+.-.|||.+ ..+ .||+|+.++.+- +...+...|+.|.+.|+| ||.++=+-+..-....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLLYHFED 304 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccceeeeccC
Confidence 02345556789877 222 499998876554 455688999999999999 8877654443322221
Q ss_pred chhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 304 KHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 304 ~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+ +. ....+-+.+.+++..+.+.-||++++-..+
T Consensus 305 ~~---------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 305 TH---------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred CC---------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 11 00 001134679999999999999998876544
No 238
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.63 E-value=0.0038 Score=50.35 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=42.4
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ 249 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~ 249 (360)
+++|||||.|.++..+++.+|..+++++|. |.+.+.+++ ..++++....+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999999 888776653 2457777766543
No 239
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=0.012 Score=48.86 Aligned_cols=100 Identities=21% Similarity=0.261 Sum_probs=62.7
Q ss_pred HHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeC-CCCCC---------CC--C
Q 018116 187 DCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAG-DMFQY---------IP--P 253 (360)
Q Consensus 187 ~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~-D~~~~---------~p--~ 253 (360)
++|. .+.+..+|||+||-.|.+++-..++. |+..+.++|+.+... ...+.++.+ |+.++ .| .
T Consensus 62 dKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 62 DKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred hhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 3443 35678999999999999998888776 999999999844322 233445545 55442 24 3
Q ss_pred ccEEEeccccccC----------ChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 254 ADAYFFKLVFHAF----------GDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 254 ~D~i~~~~~lh~~----------~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.|+|++ .+.+.- .-+-|..+|.-+...+.| +|.++.--
T Consensus 137 VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~ 184 (232)
T KOG4589|consen 137 VDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKL 184 (232)
T ss_pred ccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEE
Confidence 787765 223221 223344555555566677 77776533
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.48 E-value=0.0021 Score=49.13 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=37.7
Q ss_pred EEeCCCCchHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCeEEEeCCCCCC---C--CCccEEEeccccc
Q 018116 200 VDVGGGNGGFSKIISEAFPGI---KCTVLDL-P---HAVANMPQ---TENLKYIAGDMFQY---I--PPADAYFFKLVFH 264 (360)
Q Consensus 200 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~ri~~~~~D~~~~---~--p~~D~i~~~~~lh 264 (360)
||||+..|..+..+++..+.. +++++|. + ..-+..++ .++++++.+|..+. . ..+|++++=. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877644 6899998 6 33333333 67899999998652 2 3699987632 33
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..+....-++.+.+.|+| ||.+++-|
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 234566778999999999 66555543
No 241
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.46 E-value=0.0066 Score=57.26 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC------C-CccEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQYI------P-PADAY 257 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~~------p-~~D~i 257 (360)
.+++|||+=|=||.++.+.+.. +. +++.+|. ..+++.+++ .+++.|+.+|+++-+ . .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4899999999999999888876 66 8999999 888888774 578999999998832 1 59999
Q ss_pred Eecc------ccccCC-hhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 258 FFKL------VFHAFG-DEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 258 ~~~~------~lh~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
++-= -=.-|+ ..+-.+++..+.+.|+| ||.++++...
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~ 338 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCS 338 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 9711 000021 22345788899999999 8888876543
No 242
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.45 E-value=0.0054 Score=53.72 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
....+|+|||||-=-++.-.....|+..++++|+ ..+++.... ..+.++...|.....| .+|+.++.-++|-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3478999999999998888788888899999999 888776653 6778888889988544 4999999999987
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+..++. ..--++.+.++. -.++|..+
T Consensus 184 le~q~~-g~g~~ll~~~~~----~~~vVSfP 209 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALRS----PHVVVSFP 209 (251)
T ss_dssp HHHHST-THHHHHHHHSCE----SEEEEEEE
T ss_pred HHHHhc-chHHHHHHHhCC----CeEEEecc
Confidence 766543 232334444553 45666444
No 243
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.45 E-value=0.011 Score=54.58 Aligned_cols=100 Identities=21% Similarity=0.273 Sum_probs=65.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C-C---
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEA-------FPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ-Y-I--- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~-~-~--- 251 (360)
.....+|+|-.||+|.++.++.+. .+..++.|+|+ +.++..++. .....+..+|.+. + .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456779999999999999988874 37889999999 776654431 3445688899876 2 2
Q ss_pred CCccEEEecccc--ccCCh-----------------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 252 PPADAYFFKLVF--HAFGD-----------------EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 252 p~~D~i~~~~~l--h~~~~-----------------~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..||+|+++--+ ..|.+ ..-..++..+.+.|++ ||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEe
Confidence 259999884322 21111 1112478889999999 89876644
No 244
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.45 E-value=0.0037 Score=43.39 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=41.7
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
+...|....++.+..+|++.+++ +...+.+.++.|...|+|++.....|+-...|++|+.|
T Consensus 8 vL~~l~~~~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 8 VLRALAHSDGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHT--TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHccCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 33444422389999999999999 67899999999999999988753222222458988864
No 245
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.42 E-value=0.0038 Score=48.43 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 30 LSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 30 ~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
..+.+|.--.++.|+..|... ++.++.||++.+++ .+..+.+.|+.|...|+++.... |..-.|++++.
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r~---Gr~~~Y~l~~~ 76 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRKQ---GKWVHYRLSPH 76 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE---cCEEEEEECch
Confidence 455677777889999999753 68999999999999 46899999999999999988763 21334888664
No 246
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.40 E-value=0.0051 Score=42.87 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=47.3
Q ss_pred HHHhCcchhhhhCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 38 AVELGIADIIHSHGR-PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 38 a~~l~lf~~L~~~~~-~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
..+-.|++.|...++ ++++.|||+.+|+ +...+.++|..|...|+|+..+. .++.|+++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~----~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGG----TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC----CCCceEeec
Confidence 345678888887533 3999999999999 46899999999999999998752 136777754
No 247
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.31 E-value=0.015 Score=57.78 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCC--------CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC--------C
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPG--------IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY--------I 251 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~--------~ 251 (360)
...+|+|.+||+|.++..++...+. ..+.++|+ +.++..++. ...+++...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 56889999 777765542 12455666665431 2
Q ss_pred CCccEEEec
Q 018116 252 PPADAYFFK 260 (360)
Q Consensus 252 p~~D~i~~~ 260 (360)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 359999884
No 248
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.29 E-value=0.0027 Score=40.73 Aligned_cols=44 Identities=30% Similarity=0.480 Sum_probs=38.4
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK 88 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~ 88 (360)
++.|...|.. ++.++.||++.+|+ +...+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 5667778876 89999999999999 67999999999999999874
No 249
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.28 E-value=0.005 Score=54.78 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=49.5
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+.+.++.|||+++|++ ..-+.|+|..|+..|++++++. +++|++++..-.|
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glp---ksT~~RlL~tL~~~G~v~~d~~-----~g~Y~Lg~~~~~l 67 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLP---KSTVHRLLQTLVELGYVEQDPE-----DGRYRLGPRLLEL 67 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcC---HHHHHHHHHHHHHCCCEEEcCC-----CCcEeehHHHHHH
Confidence 56777787633456799999999994 5889999999999999999973 4689999965433
No 250
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.28 E-value=0.034 Score=57.17 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=73.4
Q ss_pred hHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH------------C------------------------------C
Q 018116 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA------------F------------------------------P 218 (360)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~------------~------------------------------p 218 (360)
++..++....| ..+...++|-.||+|.+++..+.. | .
T Consensus 177 lAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 34455555553 145689999999999999886652 1 1
Q ss_pred CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC----CccEEEecccccc-CC-hhHHHHHHHHHHHhcc
Q 018116 219 GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP----PADAYFFKLVFHA-FG-DEDCLKILKKCREAIA 283 (360)
Q Consensus 219 ~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p----~~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~ 283 (360)
..+++++|+ +.+++.++. .+++.|..+|+.+ +.+ .+|+|+++=-... +. .++...+.+.+-+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899999 999887764 4679999999976 322 3999887633211 22 2344455555555554
Q ss_pred ---CCCCCcEEEEEee
Q 018116 284 ---GNGERGKVLIMDI 296 (360)
Q Consensus 284 ---p~~~gG~lli~e~ 296 (360)
+ |+++.++..
T Consensus 336 ~~~~---g~~~~llt~ 348 (702)
T PRK11783 336 QQFG---GWNAALFSS 348 (702)
T ss_pred HhCC---CCeEEEEeC
Confidence 5 788877654
No 251
>PRK11569 transcriptional repressor IclR; Provisional
Probab=96.25 E-value=0.0054 Score=55.55 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=49.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+.+.++.|||+.+|+ +..-+.|+|..|+..|++.++.. .++|++.+....|
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~~L 91 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-----LGHWAIGAHAFIV 91 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEecCHHHHHH
Confidence 4566667654478999999999999 46899999999999999998753 5889998865433
No 252
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.16 E-value=0.0089 Score=54.01 Aligned_cols=99 Identities=18% Similarity=0.322 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCCC----------------
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF--------------------PGIKCTVLDL---PHAVANMPQ---------------- 236 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~---------------- 236 (360)
..+||-||||.|.-..+++..+ +.++++.+|+ ..+++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999998877777766 2257899998 445543210
Q ss_pred -------CCCeEEEeCCCCC-CC---------CCccEEEeccccccC---ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 237 -------TENLKYIAGDMFQ-YI---------PPADAYFFKLVFHAF---GDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 237 -------~~ri~~~~~D~~~-~~---------p~~D~i~~~~~lh~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.-+++|...|+.+ .. +..++|.+.++++.+ +..+-.++|.++...++| |..|+|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 2357899999987 21 247888887777653 345678899999999999 888888885
Q ss_pred e
Q 018116 297 V 297 (360)
Q Consensus 297 ~ 297 (360)
-
T Consensus 244 p 244 (315)
T PF11312_consen 244 P 244 (315)
T ss_pred C
Confidence 3
No 253
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=96.13 E-value=0.0068 Score=54.79 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=49.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+.+.|+.|||+.+|+ +..-+.|+|..|+..|++.+++. .++|++++....|
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~~L 88 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ-----LGWWHIGLGVFNV 88 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEEecHHHHHH
Confidence 4566777654468999999999999 46899999999999999988753 5789998865433
No 254
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.11 E-value=0.024 Score=53.47 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=68.3
Q ss_pred CEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CCccEEEeccccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I-PPADAYFFKLVFH 264 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~-p~~D~i~~~~~lh 264 (360)
.+|||+-||+|..++..+.+.++ -+++++|+ +.+++.+++ ..++++..+|...- . ..||+|.+- -.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD-Pf- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID-PF- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC-CC-
Confidence 58999999999999999998654 47999999 888877654 34588899988762 1 359999873 22
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
..+ ..++..+.+.+++ ||.|+|.
T Consensus 124 Gs~----~~fld~al~~~~~---~glL~vT 146 (374)
T TIGR00308 124 GTP----APFVDSAIQASAE---RGLLLVT 146 (374)
T ss_pred CCc----HHHHHHHHHhccc---CCEEEEE
Confidence 222 3578888888888 8888887
No 255
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=96.06 E-value=0.0071 Score=53.92 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=49.1
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|.....+.|+.|||+.+|++ ..-+.|+|.-|+..|+++++ +++|++.+....|
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lglp---ksT~~RlL~tL~~~G~l~~~-------~~~Y~lG~~~~~l 70 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGLT---RAAARRFLLTLVELGYVTSD-------GRLFWLTPRVLRL 70 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEeC-------CCEEEecHHHHHH
Confidence 56777776544789999999999994 68999999999999999986 4789999865443
No 256
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.05 E-value=0.019 Score=48.60 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C----CCccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I----PPADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~----p~~D~i~~ 259 (360)
.+.++||+=||+|.++...+.+. ..+++.+|. +..+..+++ .+++.++..|.+.. . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 57899999999999999888773 347999999 777766553 45799999997651 1 25999987
Q ss_pred ccccccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeeecC
Q 018116 260 KLVFHAFGDEDCLKILKKCR--EAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~e~~~~ 299 (360)
-=-.. .... ..+++..+. .+|++ +.++++|....
T Consensus 121 DPPY~-~~~~-~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYA-KGLY-YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --STT-SCHH-HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCcc-cchH-HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 32211 1211 356677776 78888 66777777655
No 257
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=96.00 E-value=0.0084 Score=53.95 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=50.3
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.|++.|...+++.|..|||+.+|+ +..-+.|+|+.|...|+++++.. ++.|++++....|.
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-----~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-----DDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-----CCcEEEcHHHHHHH
Confidence 5567777654457999999999999 46899999999999999998752 47899998765444
No 258
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.00 E-value=0.04 Score=50.35 Aligned_cols=147 Identities=16% Similarity=0.200 Sum_probs=91.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeechHHHhcCC----C-----CCCeEEEeCCCCC-CCC------Ccc-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDLPHAVANMP----Q-----TENLKYIAGDMFQ-YIP------PAD- 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~----~-----~~ri~~~~~D~~~-~~p------~~D- 255 (360)
.+...|+-+|||-=.-+-.+- .| ++++.-+|+|++++.=+ + ..++.++..|+++ +++ +||
T Consensus 91 ~g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred hcccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 347899999999654433322 23 57888889999987422 1 3489999999995 443 344
Q ss_pred ----EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee-cCCCCcchh-hhhHhHhhhhhh-hcccCCcccC
Q 018116 256 ----AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV-INEKEDKHQ-VTEAKLLGDTLM-SVSVDGKERT 328 (360)
Q Consensus 256 ----~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~-~~~~~~~~~-~~~~~~~~d~~~-~~~~~g~~~t 328 (360)
++++-.++.+++.++..++|++|.....| |..+ +.+.. ......... ............ .....-....
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 244 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRV-AFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDD 244 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceE-EEeccccHHHHhcccchhhhhhccccccccccceeccCC
Confidence 47888999999999999999999999988 5544 44443 211110000 000000000000 0000011235
Q ss_pred HHHHHHHHHHCCCceeEE
Q 018116 329 DEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~ 346 (360)
..++..++.+.||.....
T Consensus 245 ~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 245 PAEIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHHHhcCEEEEec
Confidence 889999999999987766
No 259
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.15 Score=45.92 Aligned_cols=148 Identities=14% Similarity=0.213 Sum_probs=101.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeechHHHh-cCC---C------------------------CCCeEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDLPHAVA-NMP---Q------------------------TENLKY 242 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~-~a~---~------------------------~~ri~~ 242 (360)
..+...|+-+|||.-.....|...+ +.++++-+|.|.+++ ++. + ..+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4577899999999999999999988 788999999966553 221 0 356666
Q ss_pred EeCCCCC--CC----------CC-ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhh
Q 018116 243 IAGDMFQ--YI----------PP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE 309 (360)
Q Consensus 243 ~~~D~~~--~~----------p~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 309 (360)
+..|+.. .+ .+ .-++++--+|.++++++...+++.+...... +.+++.|.+.+..+-. .
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg----~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFG----K 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHH----H
Confidence 6666653 11 01 3345566688889999999999999988874 8999999998554321 1
Q ss_pred HhHhhhhhhhcc-cCC--cccCHHHHHHHHHHCCCceeEEEee
Q 018116 310 AKLLGDTLMSVS-VDG--KERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 310 ~~~~~d~~~~~~-~~g--~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+...+.-+.. ..| ...|.+..++-|.++||+.+.+.++
T Consensus 237 -vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 -VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred -HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 01111111111 112 2238889999999999998887765
No 260
>PHA00738 putative HTH transcription regulator
Probab=95.92 E-value=0.0091 Score=44.90 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+..|++.|.. +++.++.+|++.+++ +...+.+.|+.|...|+|..... |....|++++..
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK~---Gr~vyY~Ln~~~ 73 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYKE---GRTLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEECCCc
Confidence 46778888876 247999999999999 67999999999999999998873 224458877654
No 261
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.89 E-value=0.0098 Score=53.31 Aligned_cols=60 Identities=25% Similarity=0.445 Sum_probs=48.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|... ++.|+.|||+.+|++ ..-+.|+|+.|+..|+++++.. .++|++.+....|
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl~---kstv~Rll~tL~~~G~l~~~~~-----~~~Y~lG~~~~~l 76 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMMS---KSTVYRFLQTMKTLGYVAQEGE-----SEKYSLTLKLFEL 76 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEEcCC-----CCcEEecHHHHHH
Confidence 4556666653 689999999999994 6899999999999999998742 5889999865433
No 262
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.84 E-value=0.36 Score=45.58 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=63.8
Q ss_pred CCCEEEEeCCCCchHHHHHH--------HH-------CCCCeEEEeechH-----HHhcCC---------------CCCC
Q 018116 195 GLGSIVDVGGGNGGFSKIIS--------EA-------FPGIKCTVLDLPH-----AVANMP---------------QTEN 239 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a~---------------~~~r 239 (360)
+..+|+|+|||+|..+..+. ++ -|..++..-|+|. +..... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 36689999999997764432 22 2567888888852 111110 0111
Q ss_pred ---eEEEeCCCCCC-CC--CccEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 018116 240 ---LKYIAGDMFQY-IP--PADAYFFKLVFHAFGD--E----------------------------------DCLKILKK 277 (360)
Q Consensus 240 ---i~~~~~D~~~~-~p--~~D~i~~~~~lh~~~~--~----------------------------------~~~~~L~~ 277 (360)
+.-+.|.|+.. +| ..+++++++.||+++. + +...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23345677773 55 5999999999998863 1 11123333
Q ss_pred HHHhccCCCCCcEEEEEeeecCC
Q 018116 278 CREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 278 ~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
=++=|.| ||++++.-..+++
T Consensus 223 Ra~ELvp---GG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKR---GGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhcc---CcEEEEEEecCCC
Confidence 3456788 9999998777654
No 263
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.78 E-value=0.0078 Score=45.33 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=26.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL 227 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 227 (360)
.+...++|||||+|.+.--|.+. +.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 45778999999999988777665 778899986
No 264
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=95.78 E-value=0.013 Score=40.54 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=47.0
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCC--cccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTK--TSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~--~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
|++.|..+++|++..+|++.++....+ +..+++.|++|...|++.+.+ .+.+.+|+.|.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g------~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG------RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC------CcccccCHHHH
Confidence 566777767899999999998764323 478999999999999888765 46678888765
No 265
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.74 E-value=0.0092 Score=42.73 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=42.1
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
|+..+.. ++.+..+|+..+++ +...+.+.|+.|...|+++.. ++.|.+|+.|..+.
T Consensus 11 IL~~l~~--~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~-------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 11 ILKILSK--GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK-------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHH-T--T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE-------TTEEEE-HHHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC-------CCEEEECccHHHHH
Confidence 3444443 79999999999999 579999999999999999775 58999999998544
No 266
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.74 E-value=0.026 Score=51.51 Aligned_cols=66 Identities=26% Similarity=0.343 Sum_probs=49.9
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ 249 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~ 249 (360)
..++++.+. ..+...++|.--|.|+++.++++++|+++++++|. |.+++.+++ .+|+.++..+|.+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 356666666 67788999999999999999999999999999999 999977653 5889999888744
No 267
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=95.71 E-value=0.0041 Score=43.33 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=40.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..++..|... ++.|+.|||+.+|+ +...+.+.|+-|...|++++.+
T Consensus 10 E~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 55666666532 89999999999999 5799999999999999999986
No 268
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.71 E-value=0.063 Score=51.63 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=63.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCC---CC-CccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PH----AVANMPQTENLKYIAGDMFQY---IP-PADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~ri~~~~~D~~~~---~p-~~D~i~~~~~lh 264 (360)
.....|+|..+|.|+|+.+|... | +.++.. |. .+..+-+..-| =+-+|..++ .| .||++.+.+++.
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLI-G~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLI-GVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccc-hhccchhhccCCCCcchhheehhhhhh
Confidence 45689999999999999999754 3 444443 32 22222111111 123355443 34 599999999988
Q ss_pred cCCh-hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 265 AFGD-EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 265 ~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+.+ -+...+|-++-|.|+| ||.++|-|
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD 467 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIRD 467 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEec
Confidence 7653 4667889999999999 99998855
No 269
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.69 E-value=0.092 Score=48.61 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=75.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CC-CCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--YI-PPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~~-p~~D~i~~~~~ 262 (360)
.++.+|||.=+|.|.+++.+++.- ..+++.+|+ |.+++.+++ .+++..+.||... +. +.+|-|++.+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 458999999999999999999863 334999999 988877653 5679999999987 23 46999998764
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
- .+.+++-.+.+.+++ ||.+...+.+..+
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPED 294 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchh
Confidence 3 234678888888998 7888777766544
No 270
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=95.61 E-value=0.042 Score=37.77 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
.+.|..+||+.+|+ +...+.+.|+.|...|++.... .+.|.++|
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC------CCeEEeCC
Confidence 68999999999999 5689999999999999999884 36787764
No 271
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=95.56 E-value=0.012 Score=42.76 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
++.|.+|||+++++ ++..++++++.|...|+++... |-++.|.++...+
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~----G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSR----GRGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET----STTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecC----CCCCceeecCCHH
Confidence 46999999999999 5699999999999999998764 2257898876543
No 272
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=95.55 E-value=0.038 Score=43.08 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=53.4
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++.|..+||+.+++ +...+.+.++-|...|++++....+|+-.-.|.+|+.|..+..
T Consensus 29 ~q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 29 QQWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 355677777664 79999999999999 5678999999999999999875322221235999999986654
No 273
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.056 Score=47.03 Aligned_cols=99 Identities=17% Similarity=0.323 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC----CeEEEeec-hHHHhcCC-----CCCC--eEEEeCCCCCC---CCC--ccE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG----IKCTVLDL-PHAVANMP-----QTEN--LKYIAGDMFQY---IPP--ADA 256 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~-----~~~r--i~~~~~D~~~~---~p~--~D~ 256 (360)
.+...++|+|.|+..=+..|+..+.. .+++-+|+ ..+++... +.+. +.-+++|+..+ .|+ -.+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999888888887755 78999999 66655322 2344 44467777552 342 333
Q ss_pred -EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 257 -YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 257 -i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++....|-++++++|..+|.+++.+|+| |-.+++--
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEec
Confidence 4667899999999999999999999999 77776643
No 274
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.55 E-value=0.031 Score=50.62 Aligned_cols=98 Identities=17% Similarity=0.293 Sum_probs=68.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCC------CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQY------IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~------~p~~D~i~ 258 (360)
..+++|||+=|=+|+++.+.+.. ...+++.+|. ..+++.+++ .++++|+..|+++. ...||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45789999999999999987654 3347999999 888887763 47899999999872 23699999
Q ss_pred ec---cccccCC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 259 FK---LVFHAFG-DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 259 ~~---~~lh~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+- +.=..+. ..+-.++++.+.+.|+| ||.|+.+.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~s 238 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCS 238 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEc
Confidence 81 1111111 12345789999999999 77765543
No 275
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=95.48 E-value=0.015 Score=37.38 Aligned_cols=45 Identities=27% Similarity=0.390 Sum_probs=37.6
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCcee
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFS 87 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~ 87 (360)
.+..|+..|... ++.|..|||+.+|+ +...+.+.++.|...|+++
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 356778888874 68999999999999 6799999999999999985
No 276
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=95.46 E-value=0.0042 Score=44.83 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=49.4
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCC-cccceecchhhhhh
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK-EEEAYGLTAISALL 109 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~-~~~~y~~t~~~~~l 109 (360)
++++|...|... +..+..+|.+.+|+ +...+.+.|+.|...|+++....-.++ -...|++|+.|+..
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~ 68 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREA 68 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHH
Confidence 467778888763 79999999999999 569999999999999999887542211 11249999999843
No 277
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.034 Score=53.50 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=63.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--C-C---CCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ--Y-I---PPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~--~-~---p~~D~i~~ 259 (360)
..+..+++|+=||.|.++..++++ ..+++++++ +++++.|++ -++++|+.+|.++ + . ..+|.|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 568999999 988887764 4569999999876 2 2 25899886
Q ss_pred ccccccCChhHHH-HHHHHHHHhccCCCCCcEEEE
Q 018116 260 KLVFHAFGDEDCL-KILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 260 ~~~lh~~~~~~~~-~~L~~~~~~L~p~~~gG~lli 293 (360)
- -|..=+. .+++.+.+. +| -..++|
T Consensus 369 D-----PPR~G~~~~~lk~l~~~-~p---~~IvYV 394 (432)
T COG2265 369 D-----PPRAGADREVLKQLAKL-KP---KRIVYV 394 (432)
T ss_pred C-----CCCCCCCHHHHHHHHhc-CC---CcEEEE
Confidence 2 1221122 456666554 44 244444
No 278
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.39 E-value=0.093 Score=46.27 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC------------CCCeEEEeCCCCCC------CCC-cc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ------------TENLKYIAGDMFQY------IPP-AD 255 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~ri~~~~~D~~~~------~p~-~D 255 (360)
...+||++|+|+|..++..+. .....++..|.+..++.... +..+.....+...+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 456899999999966655444 45788999998766554331 23455555444332 234 89
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+|+++.++++-.. ...++..++..|.. ++.+++.-..+
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEEEEEecc
Confidence 9999999875432 23455566666877 67555544443
No 279
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=95.27 E-value=0.04 Score=45.67 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
++.|+++||+++++| ...+.++|+.|...|+|.... |.+|.|.+.....
T Consensus 24 ~~vs~~eIA~~~~ip---~~~l~kIl~~L~~aGLv~s~r----G~~GGy~Lar~p~ 72 (164)
T PRK10857 24 GPVPLADISERQGIS---LSYLEQLFSRLRKNGLVSSVR----GPGGGYLLGKDAS 72 (164)
T ss_pred CcCcHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEeCC----CCCCCeeccCCHH
Confidence 689999999999994 699999999999999999753 2257799866544
No 280
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.25 E-value=0.054 Score=46.29 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=54.0
Q ss_pred CCCEEEEeCCCCchHHHHH---HHHC-CCCeEEEeec-hHHH-hcCCC----CCCeEEEeCCCCCC-----C----CCcc
Q 018116 195 GLGSIVDVGGGNGGFSKII---SEAF-PGIKCTVLDL-PHAV-ANMPQ----TENLKYIAGDMFQY-----I----PPAD 255 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l---~~~~-p~~~~~~~D~-~~~~-~~a~~----~~ri~~~~~D~~~~-----~----p~~D 255 (360)
++..|+++|--.|+-+... ++.+ +..+++++|+ .... ..+.+ .+||+++.||..++ . ..++
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4689999999888766554 4455 7889999998 3222 22322 49999999998652 1 1123
Q ss_pred E-EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 256 A-YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 256 ~-i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
- +++-..=|.. +.+.+.|+.....+++ |++++|.|...
T Consensus 112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~---G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILDSSHTH--EHVLAELEAYAPLVSP---GSYLIVEDTII 150 (206)
T ss_dssp SEEEEESS------SSHHHHHHHHHHT--T---T-EEEETSHHH
T ss_pred ceEEEECCCccH--HHHHHHHHHhCccCCC---CCEEEEEeccc
Confidence 2 2222333322 3467889999999999 89998877654
No 281
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=95.13 E-value=0.048 Score=40.43 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=52.2
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc--ccCCccc-------CHH
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV--SVDGKER-------TDE 330 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~g~~~-------t~~ 330 (360)
..+|-|++.++..++|+++...-+ +++++.- .|.. ..+.+...+ .+.+..| .++
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~-----~~~ifTf--AP~T----------~~L~~m~~iG~lFP~~dRsp~i~~~~e~ 64 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR-----GSLIFTF--APRT----------PLLALMHAIGKLFPRPDRSPRIYPHREE 64 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc-----CcEEEEE--CCCC----------HHHHHHHHHhccCCCCCCCCcEEEeCHH
Confidence 356778999999999999988543 5666522 1111 111111111 1222222 689
Q ss_pred HHHHHHHHCCCceeEEEeeCCce--e-EEEEeC
Q 018116 331 EWKTLFLDAGFTHYKITNVFGLK--S-LIEVYP 360 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~~~~--~-vi~~~~ 360 (360)
++.+.++++||++.+...+..++ + ++|++|
T Consensus 65 ~l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 65 DLRRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 99999999999999988885433 2 455543
No 282
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.12 E-value=0.045 Score=40.89 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=50.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.+..+||+.+++ +...+.+.++-|...|++++.....++-...|.+|+.+..+..
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~ 79 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIE 79 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHH
Confidence 55667777653 68999999999999 4688999999999999999875211111235888888875553
No 283
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.16 Score=44.12 Aligned_cols=146 Identities=10% Similarity=0.121 Sum_probs=87.6
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEeC-CCCCC----CC-CccE
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL--PHAVANMPQTENLKYIAG-DMFQY----IP-PADA 256 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~ri~~~~~-D~~~~----~p-~~D~ 256 (360)
.++.|. ....+..+||||+.||+|+..++++ ...++.++|. .+..-..+..+||..+.. |+..- +. ..|+
T Consensus 70 ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 70 ALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred HHHhcC-cCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence 345554 2357899999999999999998886 2347888998 455556666788877655 44331 22 3667
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE-EeeecCCCCcchhhhhHhHhhhhhhhcc-cCCcccCHHHHHH
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI-MDIVINEKEDKHQVTEAKLLGDTLMSVS-VDGKERTDEEWKT 334 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli-~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~~t~~e~~~ 334 (360)
+++--.+ .+ ...+|-.+...+.| ++-++. +-+-+..... ...-.-... .........++.+
T Consensus 148 ~v~DvSF--IS---L~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~---------~v~kkGvv~d~~~~~~v~~~i~~ 210 (245)
T COG1189 148 IVIDVSF--IS---LKLILPALLLLLKD---GGDLVLLVKPQFEAGRE---------QVGKKGVVRDPKLHAEVLSKIEN 210 (245)
T ss_pred EEEEeeh--hh---HHHHHHHHHHhcCC---CceEEEEecchhhhhhh---------hcCcCceecCcchHHHHHHHHHH
Confidence 7653222 23 35778888888998 665543 2222211110 000000000 0112235678888
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
++++.||.+..+..-
T Consensus 211 ~~~~~g~~~~gl~~S 225 (245)
T COG1189 211 FAKELGFQVKGLIKS 225 (245)
T ss_pred HHhhcCcEEeeeEcc
Confidence 999999998887554
No 284
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.07 E-value=0.034 Score=35.39 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
-+.|..+||+.+++ +...+.+.|+.|.+.|++....
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~~ 42 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC
Confidence 47899999999999 5688999999999999998873
No 285
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.06 E-value=0.14 Score=43.66 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCC---CCC--CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-----TENLKYIAGDMFQ---YIP--PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~ri~~~~~D~~~---~~p--~~D~i~~~~~l 263 (360)
..+.+||.||=|-|-....+.++-|..++++--.|.+.+..+. .++|....+-..+ ..| .||-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5788999999999988887777777666655444888877664 5777777775443 344 49988753322
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.+ -++...+.+.+.++|+| +|.+-.+....
T Consensus 180 e~--yEdl~~~hqh~~rLLkP---~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLKP---EGVFSYFNGLG 209 (271)
T ss_pred hH--HHHHHHHHHHHhhhcCC---CceEEEecCcc
Confidence 22 24567889999999999 88776655443
No 286
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.05 E-value=0.54 Score=41.15 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=56.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-----CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP-----PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p-----~~D~i~~~~~ 262 (360)
-.+++||=|| -.=..+++++-..+..+++++|+ ..+++..++ .-.|+.+..|+..++| .||+++.-=.
T Consensus 43 L~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 4678999998 44566777777777789999999 877776553 4459999999999766 4999886321
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
++.+-..-++.+...+|+. +|+..++
T Consensus 122 ---yT~~G~~LFlsRgi~~Lk~--~g~~gy~ 147 (243)
T PF01861_consen 122 ---YTPEGLKLFLSRGIEALKG--EGCAGYF 147 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-S--TT-EEEE
T ss_pred ---CCHHHHHHHHHHHHHHhCC--CCceEEE
Confidence 3445677899999999996 2444433
No 287
>PRK11050 manganese transport regulator MntR; Provisional
Probab=95.05 E-value=0.12 Score=42.22 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=57.6
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCC
Q 018116 14 ELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGG 93 (360)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~ 93 (360)
+..+.++++...-.....-.++. -|+..+.. +++.+..+||+.+++ +...+.++++.|...|++.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~--- 85 (152)
T PRK11050 18 EHVEGFRQVREAHRRELIEDYVE-----LIADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP--- 85 (152)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec---
Confidence 33344455544443333333332 24455554 378999999999999 5689999999999999998864
Q ss_pred CCcccceecchhhhhhh
Q 018116 94 EKEEEAYGLTAISALLI 110 (360)
Q Consensus 94 ~~~~~~y~~t~~~~~l~ 110 (360)
...+.+|+.|..+.
T Consensus 86 ---~~~v~LT~~G~~l~ 99 (152)
T PRK11050 86 ---YRGVFLTPEGEKLA 99 (152)
T ss_pred ---CCceEECchHHHHH
Confidence 46789999887654
No 288
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.31 Score=45.00 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=71.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeC-CCCC-CCCC--ccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAG-DMFQ-YIPP--ADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~-D~~~-~~p~--~D~i~~~~ 261 (360)
..++..|||==||||++++...-. +++++|.|+ ..|++-++. -....+... |+.. ++++ +|.|..--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456789999999999999887755 899999999 888888774 234444444 8766 6664 89887611
Q ss_pred ------ccccCC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 ------VFHAFG-DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ------~lh~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...--. ++--.++|+.+.+.|++ ||++.+.-
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~ 310 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAA 310 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEec
Confidence 111111 34456889999999999 89887744
No 289
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.85 E-value=0.35 Score=45.02 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=77.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC----------------CCCeEEEeechH-----HHhcCCC-------CCC--eEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF----------------PGIKCTVLDLPH-----AVANMPQ-------TEN--LKY 242 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~----------------p~~~~~~~D~~~-----~~~~a~~-------~~r--i~~ 242 (360)
..+.-+|+|+||.+|..+..+.... |..++..-|+|. ....... ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 4566799999999999887755431 345778888852 1111110 122 344
Q ss_pred EeCCCCCC-CC--CccEEEeccccccCCh-------------------------hH------------HHHHHHHHHHhc
Q 018116 243 IAGDMFQY-IP--PADAYFFKLVFHAFGD-------------------------ED------------CLKILKKCREAI 282 (360)
Q Consensus 243 ~~~D~~~~-~p--~~D~i~~~~~lh~~~~-------------------------~~------------~~~~L~~~~~~L 282 (360)
+.+.|+.. +| ..|++++++.||+++. +. ...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 57888873 45 5999999999998752 01 122333333557
Q ss_pred cCCCCCcEEEEEeeecCCCCcchh----h-h-hHhHhhhhhhhccc----------CCcccCHHHHHHHHHHCC-Ccee
Q 018116 283 AGNGERGKVLIMDIVINEKEDKHQ----V-T-EAKLLGDTLMSVSV----------DGKERTDEEWKTLFLDAG-FTHY 344 (360)
Q Consensus 283 ~p~~~gG~lli~e~~~~~~~~~~~----~-~-~~~~~~d~~~~~~~----------~g~~~t~~e~~~ll~~aG-f~~~ 344 (360)
.| ||++++.-...++...... . . ....+.++..-... .-..++.+|+++.+++.| |.+.
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 88 9999998888777322110 0 0 01122232211110 012358999999999887 4443
No 290
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.75 E-value=0.25 Score=46.28 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCC---------------------------------------eE
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGI---------------------------------------KC 222 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~ 222 (360)
+..++..-+ +.+...++|==||+|.+++..+...+++ .+
T Consensus 180 AaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 180 AAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 344444445 4455799999999999999887766431 26
Q ss_pred EEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 223 TVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 223 ~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
+++|+ +.+++.|+. .+.|+|..+|+.. ..+ .+|+|+++-
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 79999 999887763 6889999999976 333 699998853
No 291
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=94.72 E-value=0.054 Score=43.76 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+++.++.+||+.+++ ++..+.+.++.|...|++.+.. ...|++|+.|..+.
T Consensus 20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~------~~~i~LT~~G~~~a 70 (142)
T PRK03902 20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTPKGKKIG 70 (142)
T ss_pred CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec------CceEEECHHHHHHH
Confidence 378999999999999 5689999999999999999764 47799999997654
No 292
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=94.71 E-value=0.042 Score=42.89 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=41.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV 91 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~ 91 (360)
+..+|-+|-..++|.|+++||+.++. +...+.+-|+-|...|++.+...
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 45566666522489999999999999 67899999999999999999874
No 293
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=94.67 E-value=0.07 Score=42.70 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
++.|.++||+.++++ +..+.++|+.|...|+++... |..|.|.++.....+
T Consensus 24 ~~~s~~~ia~~~~ip---~~~l~kil~~L~~~glv~s~~----G~~Ggy~l~~~~~~I 74 (135)
T TIGR02010 24 GPVTLADISERQGIS---LSYLEQLFAKLRKAGLVKSVR----GPGGGYQLGRPAEDI 74 (135)
T ss_pred CcCcHHHHHHHHCcC---HHHHHHHHHHHHHCCceEEEe----CCCCCEeccCCHHHC
Confidence 589999999999994 699999999999999998753 124679887754433
No 294
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=94.52 E-value=0.026 Score=39.41 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=36.4
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|.+.|... +..|..|||..+++ ++..+..+|+.|...|.+.+..
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 45667664 79999999999999 5699999999999999999876
No 295
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.097 Score=41.85 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=68.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-----C--CCCeEEEeCCCCC-CCCCc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-----Q--TENLKYIAGDMFQ-YIPPA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~--~~ri~~~~~D~~~-~~p~~ 254 (360)
.++..+. ..+..+.+|+|.|.|....+.++.. -...+++++ |-.+...+ . ..+..|...|+++ +..+|
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 3444444 4556899999999999888777653 357899999 76665443 1 6789999999988 66667
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..++++.+-.-++| +-.+++.-|+. +.+++-.-.-.
T Consensus 140 ~~vviFgaes~m~d-----Le~KL~~E~p~---nt~vvacRFPL 175 (199)
T KOG4058|consen 140 RNVVIFGAESVMPD-----LEDKLRTELPA---NTRVVACRFPL 175 (199)
T ss_pred ceEEEeehHHHHhh-----hHHHHHhhCcC---CCeEEEEecCC
Confidence 66665443332332 23345545666 67776654433
No 296
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.46 E-value=0.024 Score=48.47 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=44.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ 249 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~ 249 (360)
....|+|.-||.|+..+.++.++| .++.+|+ |.-+..|+. .+||.|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 557899999999999999998865 6888888 776766664 5799999999977
No 297
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=94.29 E-value=0.055 Score=39.95 Aligned_cols=64 Identities=23% Similarity=0.271 Sum_probs=47.3
Q ss_pred cchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 43 IADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
|+..|.. ++....||.+.+ ++ ++..|.+-|+.|.+.|++++....+....-.|++|+.|..|.+
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 3445554 799999999999 88 5689999999999999998865311111235999999987764
No 298
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=94.04 E-value=0.088 Score=42.60 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=51.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.+.++..|... ++.|..|||+.+++ +...+.++++-|...|++.+....+|+-.-.+.+|+.|..+..
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~ 109 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICE 109 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHH
Confidence 34456667653 78999999999999 5699999999999999999875322221223788988886653
No 299
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.00 E-value=0.1 Score=34.20 Aligned_cols=43 Identities=40% Similarity=0.442 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHH
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLL 80 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L 80 (360)
.-.+|.+|.+.|-|+.= ...|.+|||+.+|++ ...+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~P----R~~tl~elA~~lgis---~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDVP----RRITLEELAEELGIS---KSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCCC----CcCCHHHHHHHhCCC---HHHHHHHHHHH
Confidence 34689999999999873 589999999999994 56666666643
No 300
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.99 E-value=0.52 Score=45.32 Aligned_cols=102 Identities=24% Similarity=0.265 Sum_probs=73.7
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcC-----CCCCCeEEEeCCCCC-CCC--CccEEEeccccccC-
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANM-----PQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAF- 266 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~- 266 (360)
-+++-+|||.-.++..+-+.. .-.++-+|. +.+++.. +......+...|+.. .++ +||+++....++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 399999999998887776642 225677787 5554433 235678888888877 454 69999999999986
Q ss_pred ChhH-------HHHHHHHHHHhccCCCCCcEEEEEeee--cCCCC
Q 018116 267 GDED-------CLKILKKCREAIAGNGERGKVLIMDIV--INEKE 302 (360)
Q Consensus 267 ~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~--~~~~~ 302 (360)
++++ +-..+..++++|+| ||+.+.+... .+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCC
Confidence 3332 23468899999999 9998888773 44443
No 301
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.95 E-value=0.29 Score=47.37 Aligned_cols=123 Identities=19% Similarity=0.286 Sum_probs=82.8
Q ss_pred CChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhh-cCCCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec-
Q 018116 154 KNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKI-FEGLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL- 227 (360)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~- 227 (360)
...|+.+++|+-....|.++.. ..+++..+++ .+....|.-+|+|-|-+..+.+++ ...++..+++-
T Consensus 332 ~~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKN 404 (649)
T KOG0822|consen 332 NQTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKN 404 (649)
T ss_pred hhhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecC
Confidence 3557888888877777766543 3344444322 123567889999999888776654 24567788887
Q ss_pred hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEeccccccCCh-hHHHHHHHHHHHhccC
Q 018116 228 PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD-EDCLKILKKCREAIAG 284 (360)
Q Consensus 228 ~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~-~~~~~~L~~~~~~L~p 284 (360)
|+++-.... .++|+++..||.+ ..| ..|++++ ..|--+.| +--.+.|.-+-+.|+|
T Consensus 405 PNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 405 PNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred cchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCC
Confidence 777654442 7899999999988 333 5898764 34444443 3334668888899999
No 302
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=93.84 E-value=0.042 Score=37.29 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=36.7
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.|.+.|....+|.+..|||+.+|+ +....+++|..|...|.+.+..
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455666552379999999999999 5788999999999999998754
No 303
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.82 E-value=0.051 Score=51.03 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=37.7
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDM 247 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~ 247 (360)
+|||+=||.|.++..+++.+ -++++++. +++++.|+. -++++|+.++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 89999999999999999874 48999999 899888764 56899988764
No 304
>PRK10742 putative methyltransferase; Provisional
Probab=93.80 E-value=0.14 Score=45.06 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=50.8
Q ss_pred HHHHHHhhhhcCCCC--EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEe
Q 018116 183 FIVKDCCRKIFEGLG--SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------------TENLKYIA 244 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~--~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~ri~~~~ 244 (360)
+.++++.. ++++. +|||.=+|.|..+..++.+ +++++.++. |.+....+. ..|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 34555565 55655 9999999999999999988 888999998 655432221 14677777
Q ss_pred CCCCCC---CC-CccEEEe
Q 018116 245 GDMFQY---IP-PADAYFF 259 (360)
Q Consensus 245 ~D~~~~---~p-~~D~i~~ 259 (360)
+|..+. .+ .||+|++
T Consensus 152 ~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYL 170 (250)
T ss_pred CcHHHHHhhCCCCCcEEEE
Confidence 776551 22 4777775
No 305
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=93.64 E-value=0.084 Score=45.46 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=49.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc-CCCC-cccceecchhhhhhhcC
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV-GGEK-EEEAYGLTAISALLIKD 112 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~t~~~~~l~~~ 112 (360)
..|+..|... ++.|..+||+.+|+ +...+.+.|+.|...|++++... ...| -.-.|++|+.+..+.++
T Consensus 4 ~~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~~ 73 (203)
T TIGR02702 4 EDILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFPQ 73 (203)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhccc
Confidence 4566777654 78999999999999 56899999999999999987621 0001 01238999988755543
No 306
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.60 E-value=0.069 Score=51.37 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=46.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ 249 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~ 249 (360)
++....++||=||||.++.++++. -.+++|+++ |+.++.|+. -.+.+|++|-.++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 667799999999999999999886 568999999 998888764 5789999994444
No 307
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=93.60 E-value=0.11 Score=45.97 Aligned_cols=67 Identities=15% Similarity=0.370 Sum_probs=57.6
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++....+.+|+=.|.. +|.|.+||-..++++ +..+..-++-|...|++.+++ +.|++|+.|..++.
T Consensus 8 ~if~SekRk~lLllL~e--gPkti~EI~~~l~vs---~~ai~pqiKkL~~~~LV~~~~-------~~Y~LS~~G~iiv~ 74 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE--GPKTIEEIKNELNVS---SSAILPQIKKLKDKGLVVQEG-------DRYSLSSLGKIIVE 74 (260)
T ss_pred HHHccHHHHHHHHHHHh--CCCCHHHHHHHhCCC---cHHHHHHHHHHhhCCCEEecC-------CEEEecchHHHHHH
Confidence 34555668888989987 899999999999994 578888999999999999994 99999999987764
No 308
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=93.59 E-value=0.12 Score=42.25 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++....+||+.++++ +..+..+++-|...|+++... .+.+.+|+.|..++.
T Consensus 22 ~~~~~~~diA~~L~Vs---p~sVt~ml~rL~~~GlV~~~~------y~gi~LT~~G~~~a~ 73 (154)
T COG1321 22 KGFARTKDIAERLKVS---PPSVTEMLKRLERLGLVEYEP------YGGVTLTEKGREKAK 73 (154)
T ss_pred cCcccHHHHHHHhCCC---cHHHHHHHHHHHHCCCeEEec------CCCeEEChhhHHHHH
Confidence 3799999999999995 588999999999999999987 689999999986654
No 309
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=93.55 E-value=0.087 Score=42.99 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
++.|+++||+..+++ +..+.++|..|...|+|+-.. |-+|.|+|..-...+
T Consensus 24 ~~~s~~~IA~~~~is---~~~L~kil~~L~kaGlV~S~r----G~~GGy~Lar~~~~I 74 (150)
T COG1959 24 GPVSSAEIAERQGIS---PSYLEKILSKLRKAGLVKSVR----GKGGGYRLARPPEEI 74 (150)
T ss_pred CcccHHHHHHHhCcC---HHHHHHHHHHHHHcCCEEeec----CCCCCccCCCChHHC
Confidence 389999999999995 599999999999999998876 226889997765443
No 310
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.55 E-value=0.19 Score=45.33 Aligned_cols=66 Identities=23% Similarity=0.302 Sum_probs=55.2
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ 249 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~ 249 (360)
.+++++.+. ..+....+|.-=|.|+++..+++++|... ++++|. |.+++.+++ .+|+.++..+|..
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 455666666 56779999999999999999999998664 999999 999998875 5799999988754
No 311
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.47 E-value=1.2 Score=37.02 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=75.1
Q ss_pred EeCCCCchHHHHHHHHCC-CCeEEE--eec-hHHHhcCCC---------CCCeEEE-eCCCCC---CC--C--CccEEEe
Q 018116 201 DVGGGNGGFSKIISEAFP-GIKCTV--LDL-PHAVANMPQ---------TENLKYI-AGDMFQ---YI--P--PADAYFF 259 (360)
Q Consensus 201 DvG~G~G~~~~~l~~~~p-~~~~~~--~D~-~~~~~~a~~---------~~ri~~~-~~D~~~---~~--p--~~D~i~~ 259 (360)
=||=|.-+++..|++.++ ..++++ +|. .++.+.-.. ...+.+. ..|..+ .. . .||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 378888899999999987 555444 554 444433331 2334333 335544 22 2 4999998
Q ss_pred ccccccC-----------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccC
Q 018116 260 KLVFHAF-----------GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERT 328 (360)
Q Consensus 260 ~~~lh~~-----------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t 328 (360)
++--... ..+-...+++.+.+.|++ +|.+.|.-. .++.++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~--------------------------~~~py~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLK--------------------------DGQPYD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeC--------------------------CCCCCc
Confidence 6543320 112345688889999999 898888332 123345
Q ss_pred HHHHHHHHHHCCCceeEEEee
Q 018116 329 DEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.-++.++.+++||...+..+.
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred cccHHHHHHhcCCEEEEEecC
Confidence 556678888899998888766
No 312
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=93.45 E-value=0.1 Score=34.91 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=39.4
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.|.+.|... +..|++|||+.+++ ++.-++|=|..|...|++.+..
T Consensus 4 ~Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 4 QILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 356677664 89999999999999 5689999999999999999985
No 313
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=93.37 E-value=0.1 Score=41.50 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
++.|.++||+.+++ +...+.++|+.|...|++.... |.++.|.++.....+
T Consensus 24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~----g~~ggy~l~~~~~~i 74 (132)
T TIGR00738 24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVR----GPGGGYRLARPPEEI 74 (132)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecc----CCCCCccCCCCHHHC
Confidence 59999999999999 4699999999999999998753 114678887665544
No 314
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=93.28 E-value=0.062 Score=36.35 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=38.1
Q ss_pred HhCcchhhhhCCCC--CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRP--ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~--~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.++-.|... ++ .|..|||+.+++ +...+.+.++.|...|++++..
T Consensus 7 q~~vL~~l~~~-~~~~~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARH-PGEELTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHS-TTSGEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHC-CCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 34455566554 34 899999999999 5699999999999999999875
No 315
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.26 E-value=0.53 Score=39.65 Aligned_cols=100 Identities=12% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---CCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I---PPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~---p~~D~i~~~ 260 (360)
.+.++||+=+|+|.++..-+.+. ..+++.+|. ..+...+++ ..++.+...|...- . +.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 57899999999999999888773 447888998 666555443 57888888888641 1 139999974
Q ss_pred cccc-cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 261 LVFH-AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 261 ~~lh-~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
=-.+ .+-+.+...++-.-..+|+| +.++++|.-..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 3333 11111222222224577998 55666665544
No 316
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=93.07 E-value=0.2 Score=40.38 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=49.2
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++..|...+++.|..+||+.+++ +...+.++++.|...|+|++....+|+-.-.+.+|+.|..+..
T Consensus 35 ~vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 35 VTLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 345556543346899999999999 5689999999999999999975322121224889999886654
No 317
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=93.00 E-value=0.12 Score=36.00 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=43.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
++.++..|.. ++.+..+||+.+|+ +...+.+.++.|.+.|+..... +.+|.+.+..
T Consensus 2 ~~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~------~~g~~l~~~~ 57 (69)
T TIGR00122 2 PLRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV------GKGYRLPPPI 57 (69)
T ss_pred hHHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec------CCceEecCcc
Confidence 4567777875 68999999999999 6789999999999999965543 3567665443
No 318
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=92.89 E-value=0.2 Score=38.41 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=49.3
Q ss_pred HhCcchhhh--h-CCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIH--S-HGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~--~-~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|. . .+++.|..+||..+++ +...+.++++.|...|++.+....+|.-.-.+.+|+.+..+.
T Consensus 27 q~~vL~~l~~~~~~~~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 27 ELLILYYLGKLENNEGKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred HHHHHHHHHhhhccCCcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 455555555 1 1368999999999999 579999999999999999986532211112377888887554
No 319
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=92.83 E-value=0.23 Score=33.31 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=41.1
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
|+..|.. ++.|..+|++.+++ +...+.+.|+.|...|++..... +....|.++.
T Consensus 2 il~~l~~--~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~~---~~~~~~~~~~ 55 (66)
T smart00418 2 ILKLLAE--GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRRE---GKRVYYSLTD 55 (66)
T ss_pred HHHHhhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeeec---CCEEEEEEch
Confidence 3455553 79999999999999 45889999999999999997652 1134566665
No 320
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.81 E-value=0.96 Score=41.92 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=65.1
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC---CCCCCC-CccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGD---MFQYIP-PADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D---~~~~~p-~~D~i~~~~~lh~~ 266 (360)
..++.+|+-+|+| .|.++..++++.- .+++++|. ++-.+.+++...-.++... ..+... .+|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 5678899998877 4568888998765 99999999 7777777764444444432 222222 2999886433 1
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..+...-+.|++ ||+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 346677788999 99999987764
No 321
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=92.80 E-value=0.12 Score=44.40 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=46.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
++.++..|... ++.+..|||+.+++ ++..+.+.|+.|...|++.+.+. ....|.+|+.|
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~----r~~~~~lT~~G 203 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR----KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC----CccEEEeCCCC
Confidence 45666777653 68999999999999 56889999999999999999851 13568888754
No 322
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=92.62 E-value=2.4 Score=40.16 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=66.2
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCch----HHHHHHHHC---CCCeEEEeechH-----HHhcCC--------C-CCCeE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGG----FSKIISEAF---PGIKCTVLDLPH-----AVANMP--------Q-TENLK 241 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~--------~-~~ri~ 241 (360)
+.+++.+. -...-+|+|+|.|.|. +...|+.+- |.+++|+++.|. .++.+. . .-.++
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 45667776 5577899999999995 444455543 788999999832 222221 1 33455
Q ss_pred EEeC--CCCCCC--------C-CccEEEeccccccCChh------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 242 YIAG--DMFQYI--------P-PADAYFFKLVFHAFGDE------DCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 242 ~~~~--D~~~~~--------p-~~D~i~~~~~lh~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
|... +-.++. + ++=+|-+...||++.++ ....+|+.++ .|+| -.+++.|.-.+.+
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea~~n 249 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEADHN 249 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecCCCC
Confidence 5542 211111 1 23334556677988632 2445777776 5899 5777777765543
No 323
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=92.58 E-value=0.067 Score=35.84 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=37.7
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.++..|... ++.+..+||+.+++ +...+.++++.|...|++++..
T Consensus 6 ~~iL~~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 6 FRILRILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 3344455553 68999999999999 6799999999999999999875
No 324
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=92.43 E-value=0.21 Score=37.10 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=40.2
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 56 LSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 56 ~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.+||+.+++ +...+.+.++.|...|++.+.. +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC------CCceEechhHHHHH
Confidence 4689999999 5689999999999999999986 46899999887654
No 325
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=92.32 E-value=0.18 Score=41.23 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSG 123 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~ 123 (360)
.+.|..+||+..++ ++..+.++|..|...|+++-.. |-.|+|+++.....+ ++.+++..
T Consensus 23 ~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~r----G~~GGy~La~~p~eI------tl~dIi~a 81 (153)
T PRK11920 23 KLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVR----GRNGGVRLGRPAADI------SLFDVVRV 81 (153)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec----CCCCCeeecCCHHHC------cHHHHHHH
Confidence 57899999999999 4699999999999999998876 235789987655433 35555543
No 326
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=92.31 E-value=0.14 Score=35.29 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-|-|+.|||+.+|+. ++..+.+.|+.|...|++.+..
T Consensus 23 G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 4578999999999995 5789999999999999999885
No 327
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=92.27 E-value=0.21 Score=34.79 Aligned_cols=57 Identities=30% Similarity=0.466 Sum_probs=43.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
+..|+..+.. ++.+..||++.+++ +...+.+.|+.|.+.|++.....+ ....|++++
T Consensus 9 ~~~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~~---~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEec---cEEEEEeCC
Confidence 3445566655 34999999999999 568899999999999999986521 135577776
No 328
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=92.09 E-value=0.17 Score=33.32 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=32.9
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMG 84 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g 84 (360)
.|+..|..+++++|.++||+.+++ +.+-+.+-+..|...|
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCC
Confidence 455667443467999999999999 6799999999999999
No 329
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=92.07 E-value=0.54 Score=39.68 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=60.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCC-C----------CC-
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---------TENLKYIAGDMFQY-I----------PP- 253 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~ri~~~~~D~~~~-~----------p~- 253 (360)
+...|+-+|||-=.....+....+++++.-+|.|++++.-++ ..+.+++..|+.++ + ++
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 445999999999999999988878899999999988764332 23467899999862 1 12
Q ss_pred ccEEEeccccccCChhHHHHHHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCR 279 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~ 279 (360)
.-++++-.++.+++.+++..+|+.++
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 44677888899999999998888763
No 330
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.06 E-value=0.35 Score=44.00 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeC----CCCCCC----CCccEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAG----DMFQYI----PPADAY 257 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~----D~~~~~----p~~D~i 257 (360)
...++||||+|....=--|..+..++++++.|+ +..++.|++ .++|+++.. +++... ..||+.
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 357999999998754323333334899999999 888887764 578988755 344422 149999
Q ss_pred EeccccccCCh
Q 018116 258 FFKLVFHAFGD 268 (360)
Q Consensus 258 ~~~~~lh~~~~ 268 (360)
+|+=-+|.-.+
T Consensus 182 mCNPPFy~s~~ 192 (299)
T PF05971_consen 182 MCNPPFYSSQE 192 (299)
T ss_dssp EE-----SS--
T ss_pred ecCCccccChh
Confidence 98777765333
No 331
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.02 E-value=0.32 Score=45.35 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=71.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec---hHHHhcCC-------------CCCCeEEEeCCCCCC------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL---PHAVANMP-------------QTENLKYIAGDMFQY------ 250 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~-------------~~~ri~~~~~D~~~~------ 250 (360)
..+...+.|+|+|.|.....++.-.....-+|+.+ |.-+.... +...++.+.+++..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 56778999999999999888776655555666655 22221111 156688899998763
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 251 IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 251 ~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
.+.+++|+++++.. +++.. .=+.++..-+++ |.+++-.++..+.+
T Consensus 270 ~~eatvi~vNN~~F--dp~L~-lr~~eil~~ck~---gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 270 QTEATVIFVNNVAF--DPELK-LRSKEILQKCKD---GTRIISSKPLVPRP 314 (419)
T ss_pred hhcceEEEEecccC--CHHHH-HhhHHHHhhCCC---cceEeccccccccc
Confidence 24699999999885 44433 334477777788 89999988888743
No 332
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=91.95 E-value=0.17 Score=40.08 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
++.|+.|||+++++ +...+.++|+.|...|++..... ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g----~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRG----VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCC----CCCChhhcC
Confidence 68999999999999 56999999999999999987531 145677744
No 333
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.93 E-value=0.67 Score=40.07 Aligned_cols=93 Identities=23% Similarity=0.348 Sum_probs=64.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC----C-C-C---eEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CC--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF----P-G-I---KCTVLDLPHAVANMPQTENLKYIAGDMFQY---------IP-- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~----p-~-~---~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~---------~p-- 252 (360)
+.+..+++|+-+-.|.++..+.+++ + . . +++.+|+..|... +.|.-+.+|+..+ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHHhCCC
Confidence 5678899999999999999998875 2 1 1 2888998666443 3466677888662 12
Q ss_pred CccEEEecc-----ccccCCh----hHHHHHHHHHHHhccCCCCCcEEE
Q 018116 253 PADAYFFKL-----VFHAFGD----EDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 253 ~~D~i~~~~-----~lh~~~~----~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
.+|+|++-. -+|+++. +-....|+-...+|+| ||.++
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 499999843 5676654 2234456666788999 77764
No 334
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=91.91 E-value=0.49 Score=32.05 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 54 ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 54 ~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.|..+||+.+++ +...+.+.|..|...|+++...
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 459999999999 5688999999999999998764
No 335
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.83 E-value=0.098 Score=39.75 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=42.4
Q ss_pred CccEEEeccccc----cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccC
Q 018116 253 PADAYFFKLVFH----AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERT 328 (360)
Q Consensus 253 ~~D~i~~~~~lh----~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t 328 (360)
.||+|+|..|.- ++.|+-...+++++++.|+| ||.+ |+|+-.=. .+........ .+......-...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p---GG~l-ilEpQ~w~-----sY~~~~~~~~-~~~~n~~~i~lr 70 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP---GGIL-ILEPQPWK-----SYKKAKRLSE-EIRENYKSIKLR 70 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE---EEEE-EEE---HH-----HHHTTTTS-H-HHHHHHHH----
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC---CCEE-EEeCCCcH-----HHHHHhhhhH-HHHhHHhceEEC
Confidence 389999877642 24688899999999999999 5555 54532110 0000000000 000000111234
Q ss_pred HHHHHHHHHH--CCCceeEEEeeC
Q 018116 329 DEEWKTLFLD--AGFTHYKITNVF 350 (360)
Q Consensus 329 ~~e~~~ll~~--aGf~~~~~~~~~ 350 (360)
++++.++|.+ .||...+....+
T Consensus 71 P~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 71 PDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp GGGHHHHHTSTTT---EEEEE---
T ss_pred hHHHHHHHHhcccceEEEEEcccC
Confidence 5678888887 599988765553
No 336
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=91.56 E-value=0.17 Score=43.62 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=49.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccC-CCC-cccceecchhhhhhhcCC
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GEK-EEEAYGLTAISALLIKDK 113 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t~~~~~l~~~~ 113 (360)
-.|...|.++ +|+|+.|||+++|++ +..+++.|+.|.+.|+++..... .-| -.-.|++|..+....++.
T Consensus 14 ~~il~lL~~~-g~~sa~elA~~Lgis---~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~~~ 84 (218)
T COG2345 14 ERILELLKKS-GPVSADELAEELGIS---PMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFPKR 84 (218)
T ss_pred HHHHHHHhcc-CCccHHHHHHHhCCC---HHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcchh
Confidence 3455566654 899999999999994 68999999999999999775310 000 012499999887654443
No 337
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=91.45 E-value=0.34 Score=32.12 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=31.9
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPI-TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~-t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..+ |..+||+.+++ +...+.+.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 5689999999999999998765
No 338
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=91.44 E-value=0.16 Score=43.88 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=53.6
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPL 120 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~ 120 (360)
+.|+..|..........|||..+|+. ++.+...++-|+..|++++.+ .++|..|..+.....+.-..++.+
T Consensus 13 fqIL~ei~~~qp~v~q~eIA~~lgiT---~QaVsehiK~Lv~eG~i~~~g------R~~Y~iTkkG~e~l~~~~~dlr~f 83 (260)
T COG1497 13 FQILSEIAVRQPRVKQKEIAKKLGIT---LQAVSEHIKELVKEGLIEKEG------RGEYEITKKGAEWLLEQLSDLRRF 83 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCC---HHHHHHHHHHHHhccceeecC------CeeEEEehhHHHHHHHHHHHHHHH
Confidence 33444444333688999999999995 599999999999999999976 579999999985444332234444
Q ss_pred h
Q 018116 121 V 121 (360)
Q Consensus 121 ~ 121 (360)
.
T Consensus 84 ~ 84 (260)
T COG1497 84 S 84 (260)
T ss_pred H
Confidence 3
No 339
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.42 E-value=0.45 Score=42.74 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=67.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CC--CCcc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YI--PPAD 255 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~--p~~D 255 (360)
....++++-||+|-|.+....++. +.+ +...+|+ ..+++.-++ ..+|.+.-||-+. .. ..||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 356789999999999999888876 544 5677787 666654432 6899999998766 23 3599
Q ss_pred EEEeccccccCChh--HHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 256 AYFFKLVFHAFGDE--DCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 256 ~i~~~~~lh~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+|+.-..=-..+.. =...+..-+.++|++ ||.++...-+
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGEC 238 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecce
Confidence 98862210001111 012456667789999 8888776543
No 340
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=91.42 E-value=0.3 Score=39.33 Aligned_cols=62 Identities=13% Similarity=0.274 Sum_probs=45.8
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.+|++.+.++.+ .. +.+.|..+||+.+|+ +...+++.|+.|...|+++... |-+++|.++..
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~----G~~GG~~l~~~ 70 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVR----GKNGGIRLGKP 70 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEec----CCCCCeeecCC
Confidence 345555554432 22 357899999999999 5689999999999999998875 22467888653
No 341
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.36 E-value=0.79 Score=35.86 Aligned_cols=86 Identities=20% Similarity=0.341 Sum_probs=47.6
Q ss_pred CCCCEEEEeCCCCch-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCC----CCccEEEeccccccCC
Q 018116 194 EGLGSIVDVGGGNGG-FSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYI----PPADAYFFKLVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~----p~~D~i~~~~~lh~~~ 267 (360)
....+|++||-|.=. .+..|.+. ++.++++|. +. .+ ...+.++.-|+++|- .++|+|++.+ |
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----P 79 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----P 79 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---cc--ccCcceeeecccCCCHHHhcCCcEEEEeC-----C
Confidence 345699999998765 44555555 589999999 55 22 367899999999963 2799999876 4
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+.+...-+-++++.. |.-++|.-.
T Consensus 80 P~El~~~il~lA~~v-----~adlii~pL 103 (127)
T PF03686_consen 80 PPELQPPILELAKKV-----GADLIIRPL 103 (127)
T ss_dssp -TTSHHHHHHHHHHH-----T-EEEEE-B
T ss_pred ChHHhHHHHHHHHHh-----CCCEEEECC
Confidence 555556666666655 455666443
No 342
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=91.35 E-value=0.3 Score=31.44 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=36.7
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+++.|... ++.+..+|++.+++ +...+.+.|..|...|++.+..
T Consensus 5 il~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 5 ILELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 44455543 68999999999999 5689999999999999999874
No 343
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=91.28 E-value=0.33 Score=41.79 Aligned_cols=55 Identities=22% Similarity=0.420 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
..++|...++..|++.|... +|+.+.|||+++|+ ++.-+..-+..|...|+++-.
T Consensus 16 v~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeee
Confidence 44688888999999999875 79999999999999 468899999999999999654
No 344
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.17 E-value=3.1 Score=31.92 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=54.6
Q ss_pred CCCEEEEeCCCCchHH-HHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCC----CCccEEEeccccccCCh
Q 018116 195 GLGSIVDVGGGNGGFS-KIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYI----PPADAYFFKLVFHAFGD 268 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~----p~~D~i~~~~~lh~~~~ 268 (360)
...+|++||-|.=... ..|+++ ++.++.+|+ +. .+ ...+++...|+++|- .++|+|++.. |+
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~---~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK---TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc---cC--cccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 4569999998876544 444444 588999998 44 33 367899999999862 3699998765 55
Q ss_pred hHHHHHHHHHHHhcc
Q 018116 269 EDCLKILKKCREAIA 283 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~ 283 (360)
++....+-.++++++
T Consensus 81 pEl~~~ildva~aVg 95 (129)
T COG1255 81 PELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHHhhC
Confidence 666666666776664
No 345
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=90.99 E-value=0.28 Score=38.20 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=43.7
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+=-.+.|.+.|+.. +|.|..|+|+..|- +...+.|-|+.|...|++..+.
T Consensus 63 sp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 63 SPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred ChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 33457788888875 89999999999999 6789999999999999999886
No 346
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=90.91 E-value=1.3 Score=39.51 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=108.0
Q ss_pred CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhhhhhhcC----c-cc
Q 018116 55 TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILD----P-EN 129 (360)
Q Consensus 55 t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~----~-~~ 129 (360)
+.-.|+....+ +.+.+..+++.|...|++..++ +...+|..|..++..- .+...-.+-+. . ..
T Consensus 36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~-------g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeGrgi~ 103 (354)
T COG1568 36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE-------GGVELTEKGEELAEEL--GIKKKYDYTCECCEGRGIS 103 (354)
T ss_pred chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec-------CcEeehhhhHHHHHHh--CCCccccccccCcCCcccc
Confidence 88889988888 4789999999999999999995 6699999999887632 22221111100 0 00
Q ss_pred cchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchH
Q 018116 130 IFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGF 209 (360)
Q Consensus 130 ~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~ 209 (360)
...+..|-+- +-++....|+-...|.+....-...... ++=.+..+...++.|+-+| .--.+
T Consensus 104 l~~f~dll~k----------------f~eiaK~RP~p~~~yDQgfvTpEttv~R-v~lm~~RGDL~gK~I~vvG-DDDLt 165 (354)
T COG1568 104 LQAFKDLLEK----------------FREIAKDRPEPLHQYDQGFVTPETTVSR-VALMYSRGDLEGKEIFVVG-DDDLT 165 (354)
T ss_pred chhHHHHHHH----------------HHHHHhcCCCcchhcccccccccceeee-eeeeccccCcCCCeEEEEc-Cchhh
Confidence 1112222211 1222222232222222211111000000 0000111134567899998 55566
Q ss_pred HHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-----CccEEEeccccccCChhH----HHH
Q 018116 210 SKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-----PADAYFFKLVFHAFGDED----CLK 273 (360)
Q Consensus 210 ~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-----~~D~i~~~~~lh~~~~~~----~~~ 273 (360)
+++++-..---++.++|+ ...+....+ .++++.+..|..+|+| .||+++- ++++ ...
T Consensus 166 sia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT-------DPpeTi~alk~ 238 (354)
T COG1568 166 SIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT-------DPPETIKALKL 238 (354)
T ss_pred HHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec-------CchhhHHHHHH
Confidence 666655443447888888 655544332 5779999999999887 4999763 2222 334
Q ss_pred HHHHHHHhccC
Q 018116 274 ILKKCREAIAG 284 (360)
Q Consensus 274 ~L~~~~~~L~p 284 (360)
+|.+=...|+.
T Consensus 239 FlgRGI~tLkg 249 (354)
T COG1568 239 FLGRGIATLKG 249 (354)
T ss_pred HHhccHHHhcC
Confidence 55555567775
No 347
>PRK10870 transcriptional repressor MprA; Provisional
Probab=90.60 E-value=0.51 Score=39.60 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=50.3
Q ss_pred hCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++-.|... +++.|..|||+.+++ +...+.++++-|...|++++....+|+-.-.+.+|+.|..+..
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 4455555432 257899999999999 5689999999999999999976432221234889999986654
No 348
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=90.58 E-value=0.44 Score=40.04 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=40.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
...|+++|..+ +++|.++||..+|+ +...++++|..|...|++...
T Consensus 24 ~~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 24 GFEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred HhHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEe
Confidence 34588888765 79999999999999 578999999999999999854
No 349
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.53 E-value=0.091 Score=42.41 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=37.6
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+.|+|++.+++.|++-++-...++.+++.||| ||.|-+.-+
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 59999999999999999999999999999999 999887654
No 350
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=90.50 E-value=0.47 Score=34.84 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=48.7
Q ss_pred HHHHhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHH----------HHHHhCCce-eccccCCCCcccceecch
Q 018116 37 GAVELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFM----------RLLVHMGLF-SKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 37 ~a~~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL----------~~L~~~g~l-~~~~~~~~~~~~~y~~t~ 104 (360)
.=++.+++..|... +.+.++.|||..++++ +..+..-| +.|+.+|++ .+... .+...|++|+
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~---~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~---~g~k~Y~lT~ 81 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSD---YSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEK---GGFKYYRLTE 81 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCC---HHHHHHHHhcCCCCcCcchhHHHcCCeeEeeec---CCeeEEEeCh
Confidence 44577788888765 4799999999999995 45555555 569999999 44331 1134699999
Q ss_pred hhhhhh
Q 018116 105 ISALLI 110 (360)
Q Consensus 105 ~~~~l~ 110 (360)
.+..++
T Consensus 82 ~G~~~~ 87 (90)
T PF07381_consen 82 KGKRIA 87 (90)
T ss_pred hhhhHH
Confidence 887544
No 351
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=90.49 E-value=1 Score=35.12 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=62.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeccccCCC
Q 018116 16 FEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALK-IQPTKTSNLFRFMRLLVHMGLFSKTKVGGE 94 (360)
Q Consensus 16 ~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~ 94 (360)
.-+.....+.+.+-|...+|+...+ ++.-..||.+.++ + ++..|.+-|+.|...|++++..-.+-
T Consensus 10 ~c~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~~~ 75 (120)
T COG1733 10 PCPVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYPEE 75 (120)
T ss_pred CCCHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecCCC
Confidence 4457778888888888888776533 6888999999998 8 56999999999999999998753111
Q ss_pred Ccccceecchhhhhhhc
Q 018116 95 KEEEAYGLTAISALLIK 111 (360)
Q Consensus 95 ~~~~~y~~t~~~~~l~~ 111 (360)
.-.-.|++|+.|..|.+
T Consensus 76 PprveY~LT~~G~~L~~ 92 (120)
T COG1733 76 PPRVEYRLTEKGRDLLP 92 (120)
T ss_pred CceeEEEEhhhHHHHHH
Confidence 11245999999987664
No 352
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=90.37 E-value=0.54 Score=40.73 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=47.3
Q ss_pred hhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 45 DIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 45 ~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
..+.. ...+|..|||+.+++ +...+.+.|+.|...|++++... .....+++|+.+..+..
T Consensus 14 g~l~~-~~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~---~r~~~v~LTekG~~ll~ 73 (217)
T PRK14165 14 GAVNN-TVKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIV---PRGQLITITEKGLDVLY 73 (217)
T ss_pred hccCC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEc---CCceEEEECHHHHHHHH
Confidence 34543 257999999999999 67999999999999999998752 11466999999985543
No 353
>PRK06474 hypothetical protein; Provisional
Probab=90.37 E-value=0.33 Score=40.80 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCC--CCcccceecchhhh
Q 018116 32 AMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGG--EKEEEAYGLTAISA 107 (360)
Q Consensus 32 ~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~~~y~~t~~~~ 107 (360)
..+|.--.++.|++.|...+++.|+.+|++.+ ++ +..-+.|.|+.|...|+++...... .+.+..|++++.+-
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45677778899999997643459999999999 56 4577999999999999999865210 01123477777553
No 354
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=90.20 E-value=0.32 Score=37.05 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence 456788888774 78999999999999 569999999999999999854
No 355
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=90.05 E-value=0.34 Score=32.69 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+++.+..+||+.+++ ++.-....++-|...|+++.+.
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 489999999999999 5688999999999999999875
No 356
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=89.97 E-value=0.38 Score=37.18 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=39.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKI--QPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~--~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|++.|...+++.|++||.+.+.- +..+..-+.|.|+.|...|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 45577888765579999999998832 1115678999999999999999875
No 357
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=89.96 E-value=3.7 Score=38.66 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=71.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC--CeEEEeec-hHHHhcCC----C--CCCeEEEeCCCCC---CCC---CccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG--IKCTVLDL-PHAVANMP----Q--TENLKYIAGDMFQ---YIP---PADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~--~~ri~~~~~D~~~---~~p---~~D~i 257 (360)
..++.+|||.-++.|+=+.++++..++ ..++.+|. +.-++... + ..++.....|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 467899999999999999999998765 56789998 55444333 2 3457777777643 122 28998
Q ss_pred Ee------cccc-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 258 FF------KLVF-------HAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 258 ~~------~~~l-------h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
++ ..++ ..++.++ -.++|+.+.+.|+| ||.|+-.......
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~ 293 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTP 293 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCch
Confidence 87 2233 2333322 24689999999999 8877766655544
No 358
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=89.30 E-value=0.4 Score=38.43 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQ 249 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~ 249 (360)
..-|+|+|=|+|.+=-+|.+.+|+-++.++|..-.....-..+.=.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 367999999999999999999999999999973221111113344567787765
No 359
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.28 E-value=0.65 Score=37.20 Aligned_cols=104 Identities=23% Similarity=0.311 Sum_probs=62.1
Q ss_pred eEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC--CccEEEeccccccCCh---------hHHHHHHHHH
Q 018116 221 KCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YIP--PADAYFFKLVFHAFGD---------EDCLKILKKC 278 (360)
Q Consensus 221 ~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh~~~~---------~~~~~~L~~~ 278 (360)
++.++|+ +++++..++ .+|++++..+=.. ..+ ..|+++++ |-++|- +.-.+.|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 888877663 4689998765333 233 48888765 334432 3356789999
Q ss_pred HHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 279 REAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 279 ~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+.|+| ||.+.|+-..-++.... +. ....+|.+-|.+..|.+.....+
T Consensus 79 l~lL~~---gG~i~iv~Y~GH~gG~e----E~----------------~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGHPGGKE----ES----------------EAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HHHEEE---EEEEEEEE--STCHHHH----HH----------------HHHHHHHHTS-TTTEEEEEEEES
T ss_pred HHhhcc---CCEEEEEEeCCCCCCHH----HH----------------HHHHHHHHhCCcceEEEEEEEcc
Confidence 999999 78777755443332111 10 02345555556667887777766
No 360
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=89.19 E-value=0.56 Score=33.25 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=37.6
Q ss_pred chhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 44 ADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 44 f~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
=|.|+.. +..++.+||..+++ +++.++.+|..|+.+|-+++..
T Consensus 8 Rd~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 8 RDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 3566664 89999999999999 4699999999999999999874
No 361
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.06 E-value=0.66 Score=43.91 Aligned_cols=61 Identities=7% Similarity=0.063 Sum_probs=52.8
Q ss_pred CCCeEEEeCCCCC---CC--CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 237 TENLKYIAGDMFQ---YI--PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 237 ~~ri~~~~~D~~~---~~--p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.++|+++.+++.+ .. .++|.+++.....++++++..+.++.+.+.++| ||+++.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 6899999998876 23 259999999999999999999999999999999 9999987665544
No 362
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=88.18 E-value=3.7 Score=37.08 Aligned_cols=122 Identities=17% Similarity=0.234 Sum_probs=71.6
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCC----C-CCCccEEEeccccccCCh-
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-TENLKYIAGDMFQ----Y-IPPADAYFFKLVFHAFGD- 268 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~----~-~p~~D~i~~~~~lh~~~~- 268 (360)
+++|+-||.|.+...+.+. +.+ +..+|. +.+++..+. .+.. +..+|+.+ . .+.+|+++...-...++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 6899999999999988876 354 566898 777665543 1222 55677765 1 346999988654443322
Q ss_pred -------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 269 -------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 269 -------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+..-.++..+.++++.. .-+++++|.+..-... .+.....+|.+.|++.||
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~~--------------------~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGLLTH--------------------DNGNTLKVILNTLEELGY 136 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcchhcc--------------------CchHHHHHHHHHHHhCCc
Confidence 11222333333333221 1257777765422110 112256778888899998
Q ss_pred cee
Q 018116 342 THY 344 (360)
Q Consensus 342 ~~~ 344 (360)
.+.
T Consensus 137 ~~~ 139 (275)
T cd00315 137 NVY 139 (275)
T ss_pred EEE
Confidence 754
No 363
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=88.00 E-value=0.7 Score=38.58 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=40.9
Q ss_pred CCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhh
Q 018116 53 PITLSELVSAL--KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISAL 108 (360)
Q Consensus 53 ~~t~~ela~~~--~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 108 (360)
..++++||+++ ++ ...-++.-|+.|...|++++++ ++.|..|..+-.
T Consensus 39 ~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~------~g~y~~t~~~l~ 87 (171)
T PF14394_consen 39 APDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG------DGKYVQTDKSLT 87 (171)
T ss_pred CCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC------CCcEEEecceee
Confidence 34999999999 99 5788999999999999999997 579999886544
No 364
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=87.92 E-value=0.29 Score=36.18 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+++....-|.-.+++ +-......++.|+..|++..... |....|.+|+.|..+.
T Consensus 29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~---~~~~~y~lT~KG~~fl 82 (95)
T COG3432 29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDN---GRRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccC---CccceEEEChhHHHHH
Confidence 478888889999999 67999999999999997666641 1122699999998554
No 365
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=87.91 E-value=1 Score=31.96 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec-cccCCCCcccceecchhhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK-TKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~-~~~~~~~~~~~y~~t~~~~ 107 (360)
+.|+..++||+.+++ ++.-++.-|..|.++|+|+. .+. .+.|..|..+-
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~~-----s~GriPT~~aY 70 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPHP-----SGGRIPTDKAY 70 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCCC-----CCCCCcCHHHH
Confidence 479999999999999 45889999999999999985 432 47788888765
No 366
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=87.66 E-value=1.1 Score=37.82 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=50.3
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++..|... ++.|..+||+.+++ +...+.++++-|...|++.+.....|+-.-...+|+.|..+..
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 4566667653 68999999999999 4577999999999999999874322121223889999886654
No 367
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=87.64 E-value=0.55 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=25.3
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLF 86 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l 86 (360)
|+|-+|||+.+|+ ...-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 458899999999998875
No 368
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=87.47 E-value=1.1 Score=41.64 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=41.2
Q ss_pred CcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC----C----CCeEEEeec-hHHH
Q 018116 164 PGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF----P----GIKCTVLDL-PHAV 231 (360)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~ 231 (360)
|++.+.|-+.++... -.+...+. .+....+|++|+|.|.++..+++.. | .+++..++. +...
T Consensus 52 pels~lFGella~~~----~~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 52 PELSQLFGELLAEQF----LQLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 566677766654322 11222233 3456789999999999998888764 3 678999998 5443
No 369
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=87.29 E-value=1.8 Score=39.40 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=70.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CC-CccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY----IP-PADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~----~p-~~D~i~~ 259 (360)
..++.+|||..++.|+=+..+++..+ ...++..|+ +.-+..... ...+.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999877 668999998 655554432 46677777776542 22 3899887
Q ss_pred ------ccccccCCh-------hH-------HHHHHHHHHHhc----cCCCCCcEEEEEeeecC
Q 018116 260 ------KLVFHAFGD-------ED-------CLKILKKCREAI----AGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ------~~~lh~~~~-------~~-------~~~~L~~~~~~L----~p~~~gG~lli~e~~~~ 299 (360)
..++..-++ ++ -.++|+++.+.+ +| ||+++-......
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~~ 223 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSLS 223 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccHH
Confidence 112222221 11 246899999999 99 787766555443
No 370
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=87.13 E-value=1.5 Score=45.04 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-------C-----CCeEEEeec-h---HHHhcCC---------------------C
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-------P-----GIKCTVLDL-P---HAVANMP---------------------Q 236 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~---------------------~ 236 (360)
.+.-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345799999999998776666544 3 467888885 3 1111100 0
Q ss_pred --------CC--CeEEEeCCCCCC---CC-CccEEEecc-ccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 237 --------TE--NLKYIAGDMFQY---IP-PADAYFFKL-VFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 237 --------~~--ri~~~~~D~~~~---~p-~~D~i~~~~-~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.+ ++++..+|+.+. +. .+|++++-. .-..-|+=.-..+|+++++.++| ||.+.-
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~t 204 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLAT 204 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEEE
Confidence 12 334556777552 22 478877522 11111221234678888888888 776653
No 371
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=87.08 E-value=0.66 Score=38.15 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=39.5
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..|+++|..+ +.+|-+|||..+|+ +...++++|..|...|++....
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 5578888754 79999999999999 6789999999999999996543
No 372
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=86.69 E-value=1 Score=34.68 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=51.3
Q ss_pred HHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcC
Q 018116 38 AVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKD 112 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~ 112 (360)
-.++.++..|... ++.+..+||+.+++ +...+.++++-|...|++.+.....|+-.-.+.+|+.|..+...
T Consensus 22 ~~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 22 PPQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 3456666677663 34444999999999 56999999999999999999764222112348999988865543
No 373
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.61 E-value=5 Score=38.12 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=62.7
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE---eCC-CCC---CC-C--CccEEEec
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYI---AGD-MFQ---YI-P--PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~---~~D-~~~---~~-p--~~D~i~~~ 260 (360)
..+..+||.+|||. |..+..+++.....++++++. ++..+.+++.....++ ..+ +.+ .. + ++|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678999999988 888899999876446888887 7666665432112222 111 111 11 1 48888763
Q ss_pred cc---------------cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 261 LV---------------FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 261 ~~---------------lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
-- |+-.++. ...++.+.+.|+| +|+++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcCC
Confidence 21 1111222 3468888999999 9999888643
No 374
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=86.28 E-value=1.2 Score=33.16 Aligned_cols=44 Identities=7% Similarity=0.135 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
.++|..|||+.+|+ +...+.|.|..|...|++.+.+. .+.|..+
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-----~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-----MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-----CceeecC
Confidence 69999999999999 45899999999999999998752 3556665
No 375
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=86.06 E-value=0.93 Score=39.71 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=44.9
Q ss_pred HHHHHHhhhhcCCC--CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC-------C--------CCCeEEEe
Q 018116 183 FIVKDCCRKIFEGL--GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP-------Q--------TENLKYIA 244 (360)
Q Consensus 183 ~~~~~~~~~~~~~~--~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~--------~~ri~~~~ 244 (360)
+.++++.+ ++++ .+|||.-+|-|.-+.-++.. ++++++++. |.+....+ . ..|++++.
T Consensus 63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 44556665 4444 49999999999999888865 789999999 43322111 1 25899999
Q ss_pred CCCCCC--C--CCccEEEecccc
Q 018116 245 GDMFQY--I--PPADAYFFKLVF 263 (360)
Q Consensus 245 ~D~~~~--~--p~~D~i~~~~~l 263 (360)
+|..+- . ..+|+|++-=++
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S-
T ss_pred CCHHHHHhhcCCCCCEEEECCCC
Confidence 998772 2 259999984443
No 376
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=85.79 E-value=0.51 Score=33.09 Aligned_cols=45 Identities=20% Similarity=0.472 Sum_probs=35.7
Q ss_pred cchhhhhCCCCCCHHHHHHHc---CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSAL---KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~---~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+|..... +..++.++|+.+ +... ..+++..++.+|.++|++++.+
T Consensus 16 ~~~~~~~--~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 16 LFESSPD--KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp HHHHCCC--TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred HHHHCCC--CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 3444443 799999999999 7711 2599999999999999999965
No 377
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=85.65 E-value=0.91 Score=44.72 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=51.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcC
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKD 112 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~ 112 (360)
+..++..|... ++.|..+||+.+++ +...+.+.++-|.+.|+++.... ....|.+|+.|+.+..+
T Consensus 8 e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~----~~~~i~LTeeG~~~~~~ 72 (489)
T PRK04172 8 EKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEER----VEEVYVLTEEGKKYAEE 72 (489)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEee----eEEEEEECHHHHHHHHh
Confidence 45566666653 68999999999999 56899999999999999998752 13569999999955543
No 378
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=85.29 E-value=1.3 Score=34.38 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=44.2
Q ss_pred HHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 36 KGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 36 ~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..+...|.+.+..+ |..|..+++..+|+ +-..+.++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 344567788888885 89999999999999 5678999999999999999985
No 379
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=85.25 E-value=0.95 Score=36.97 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|.+.|... +..|..+||+++|+ ++..+.+=++-|.+.|++...
T Consensus 10 ~D~~Il~~Lq~d-~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRGILEALMEN-ARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 577888999874 89999999999999 568899999999999999864
No 380
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=85.14 E-value=1.4 Score=35.18 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
|++|++|||-+.|+ ..+.+..-|.++++-|-+.+..- ++.=+|+++
T Consensus 5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~q---~gkfRy~iP 50 (155)
T PF07789_consen 5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVNQ---NGKFRYCIP 50 (155)
T ss_pred CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEecC---CCceEEeCC
Confidence 89999999999999 57999999999999999999862 112347775
No 381
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=84.73 E-value=1 Score=37.29 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=42.2
Q ss_pred HHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 38 AVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
..+..|+.+|.. ++..|..|||+++|+ ++..+.+=++-|...|++...
T Consensus 14 ~~D~~IL~~Lq~-d~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 14 RIDRNILNELQK-DGRISNVELSKRVGL---SPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHHhcc-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 357889999987 489999999999999 568899999999999999854
No 382
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=84.41 E-value=0.97 Score=32.01 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=41.8
Q ss_pred HHhCcchhhhhCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHG-RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~-~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.++.+++.|+.+. .+.+-.+|+..+|. |++.+...++.|...|++.+..
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 4566777787643 68899999999999 6799999999999999999985
No 383
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.36 E-value=4.9 Score=30.66 Aligned_cols=81 Identities=26% Similarity=0.336 Sum_probs=49.4
Q ss_pred CCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEeccccccCChhHHHH
Q 018116 204 GGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHAFGDEDCLK 273 (360)
Q Consensus 204 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~~~~~~~~~ 273 (360)
||.|.++..+++.+ .+.+++++|. ++.++.++... +.++.||..++ ..++|.+++..- +++....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45567777766654 3457999999 88877776333 88999999773 125887766421 3444444
Q ss_pred HHHHHHHhccCCCCCcEEEE
Q 018116 274 ILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 274 ~L~~~~~~L~p~~~gG~lli 293 (360)
+...+ +.+.| ..+++.
T Consensus 79 ~~~~~-r~~~~---~~~ii~ 94 (116)
T PF02254_consen 79 IALLA-RELNP---DIRIIA 94 (116)
T ss_dssp HHHHH-HHHTT---TSEEEE
T ss_pred HHHHH-HHHCC---CCeEEE
Confidence 44444 44555 566654
No 384
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=84.32 E-value=2.3 Score=37.90 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=26.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHCC--------CCeEEEeec-hHH
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFP--------GIKCTVLDL-PHA 230 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~-~~~ 230 (360)
..+|+|+|+|+|.++..+++.+. .++++.++. |..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 47999999999999999888653 458999998 544
No 385
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.22 E-value=3.6 Score=38.59 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCC-CC----C-CCC-CccEEEecccc
Q 018116 196 LGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGD-MF----Q-YIP-PADAYFFKLVF 263 (360)
Q Consensus 196 ~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D-~~----~-~~p-~~D~i~~~~~l 263 (360)
..+++-+|||. |.++..+++.+...+++++|. +.-++.|++ .+.+.....+ .. + .-. ++|+++-.--
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 33999999995 667788898888889999999 888888865 2222222221 10 1 112 5999886544
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
....++.+.++++| ||++.++-.....
T Consensus 248 -------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 13468888899999 9999988877655
No 386
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=83.65 E-value=1.3 Score=43.03 Aligned_cols=69 Identities=7% Similarity=0.135 Sum_probs=54.6
Q ss_pred HHHhCcchhhhhCCCC-CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh-hhhcCCC
Q 018116 38 AVELGIADIIHSHGRP-ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA-LLIKDKS 114 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~-~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~ 114 (360)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.|. ++....|
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK----RETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 4567788888763 44 799999999999 568899999999999999776531 47799999998 5554443
No 387
>PRK05638 threonine synthase; Validated
Probab=83.13 E-value=1.8 Score=42.10 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=46.9
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcC--CCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALK--IQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~--~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.|+..|.+ ++.+.-||++.++ + +...+.+.|+.|...|+++.... .+..-.|++|+.+..+.
T Consensus 374 ~~IL~~L~~--~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~--~g~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 374 LEILKILSE--REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYR--KGRRVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHhh--CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeec--CCCcEEEEECcHHHHHH
Confidence 345666664 6899999999998 6 56899999999999999975311 01123499999887443
No 388
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=82.97 E-value=1.3 Score=41.96 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CCC--ccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y-IPP--ADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~-~p~--~D~i~~~~ 261 (360)
.+...+||||.|||.++...+++- .-.++.++. .+|.+.|++ +++|+++...-.+ . .|. +|+++.-.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 345689999999999998888875 446899998 888887764 6778877554322 2 222 66655433
Q ss_pred ccccCChhHHHHHHHHHHHhcc
Q 018116 262 VFHAFGDEDCLKILKKCREAIA 283 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~ 283 (360)
+.-.+--+-+..-++++++.|-
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 2222222223344566665553
No 389
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=82.81 E-value=1.4 Score=32.53 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=41.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.|+.+|... +|-.+.-||..+++ +...+...|+-|..+|++++..
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 46677778765 79999999999999 5789999999999999999986
No 390
>PHA02943 hypothetical protein; Provisional
Probab=82.38 E-value=1.7 Score=34.95 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=43.3
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
..+++.|.. |..|..|||+++|+ +....+-.|..|...|.+.+...+ -...|.+.+
T Consensus 14 ~eILE~Lk~--G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~~G---~~tyw~l~~ 69 (165)
T PHA02943 14 IKTLRLLAD--GCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVEIG---RAAIWCLDE 69 (165)
T ss_pred HHHHHHHhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEeec---ceEEEEECh
Confidence 346677743 78999999999999 678899999999999999998631 122366655
No 391
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=82.37 E-value=1.4 Score=37.83 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=34.9
Q ss_pred chhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 44 ADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 44 f~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+.|...+.+.|++|+|+++|+ +---.+|.|.+|++.|+++-+
T Consensus 164 ~~~~~~~~~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 164 REALKEPDQELTAEELAQALGI---SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHhCcCCccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEE
Confidence 3444422379999999999999 567789999999999999775
No 392
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=82.04 E-value=1.7 Score=30.45 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=41.1
Q ss_pred HHHHHHHHhCcch-----hhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 33 MSLKGAVELGIAD-----IIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 33 ~~L~~a~~l~lf~-----~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..+..+-+.|..+ .+. -+.|-++||..+|+ +...+.+.|+.|...|++....
T Consensus 6 ~Ll~l~~~~~~~~~~~~~~~~---~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~ 62 (76)
T PF13545_consen 6 FLLELAERFGRRQDGDGIRIP---LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR 62 (76)
T ss_dssp HHHHHHHHHEEEEETTEEEEE---EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHCCCCCCCCceEE---ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 4455666666641 232 48999999999999 5688999999999999999874
No 393
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.99 E-value=4.8 Score=36.40 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=48.1
Q ss_pred EEEEeCCCC--chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHH
Q 018116 198 SIVDVGGGN--GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKI 274 (360)
Q Consensus 198 ~iLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~ 274 (360)
+|.=||+|. |.++..|.++ +.+++++|. ++.++.+.....+.....+. +...++|+|+++ .+.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHHH
Confidence 466677764 3455555544 568999998 76666654322222111111 123468998875 366667788
Q ss_pred HHHHHHhccC
Q 018116 275 LKKCREAIAG 284 (360)
Q Consensus 275 L~~~~~~L~p 284 (360)
++++...+++
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 8999888877
No 394
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=81.94 E-value=4.4 Score=32.91 Aligned_cols=79 Identities=25% Similarity=0.395 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhCc-------chhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCccc
Q 018116 26 VFNHLSAMSLKGAVELGI-------ADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEE 98 (360)
Q Consensus 26 ~~g~~~~~~L~~a~~l~l-------f~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~ 98 (360)
.++.|...|+.++.+.++ +-.+...+.|+++.+|+..++.. |...+..-||-|...|+++..+. |-+-
T Consensus 64 Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~t~~---gkev 138 (199)
T COG5631 64 AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITRTGS---GKEV 138 (199)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceecCCC---CceE
Confidence 446677778888765443 33343335799999999999996 67788899999999999999873 2235
Q ss_pred ceecchhhhhh
Q 018116 99 AYGLTAISALL 109 (360)
Q Consensus 99 ~y~~t~~~~~l 109 (360)
.|..|+.+..-
T Consensus 139 Ty~vTa~G~~a 149 (199)
T COG5631 139 TYEVTALGHRA 149 (199)
T ss_pred EEEEecchHHH
Confidence 59999987643
No 395
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.75 E-value=2.4 Score=37.96 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=31.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-----CCCeEEEeech
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-----PGIKCTVLDLP 228 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~ 228 (360)
+.+...++|.|||.|.++..+++.. +..+++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4567899999999999999999988 56789999983
No 396
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=81.28 E-value=2.1 Score=41.84 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=53.5
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh-hhhcCCC
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA-LLIKDKS 114 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~ 114 (360)
.+..|+..|....+..+.++||+.+|+ +...+.+.+.-|.+.|+++..... ...|.+|+.|. ++....|
T Consensus 7 ~e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 7 EENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK----SNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 455666777652257999999999999 568899999999999999876531 46799999998 5554443
No 397
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=81.25 E-value=1.9 Score=41.46 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
+.|.|.++|++++++ +++.++++|+.|...|++.+.+ ++.|.+...-
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~------~g~~~l~rd~ 354 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE------RGQWVLARDL 354 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC------CCceEecCCH
Confidence 479999999999999 4689999999999999999764 4668775443
No 398
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=81.21 E-value=1.7 Score=35.26 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=42.0
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.+..|...|.. +++.|..+||+++|+ ++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~-d~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQE-DARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 46778888887 479999999999999 5688999999999999998874
No 399
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=80.94 E-value=1.9 Score=38.59 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccC
Q 018116 209 FSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAG 284 (360)
Q Consensus 209 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 284 (360)
++.+|.++.+..+++++|. +..++.+.+.+-+.-...+ .+...++|+|+++- |.....++|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 3567888888999999999 8888777443333333222 12345689998763 666778888888888887
No 400
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=80.50 E-value=2.5 Score=37.58 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=47.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
|.+++-.|-.. |+.|+.||++.+|+ +...+..+|+-|...|+++... |.+..|+.-+-...+.
T Consensus 18 Ea~vY~aLl~~-g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~----g~P~~y~av~p~~~i~ 80 (247)
T COG1378 18 EAKVYLALLCL-GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIE----GRPKKYRAVPPEELIE 80 (247)
T ss_pred HHHHHHHHHHh-CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeC----CCCceEEeCCHHHHHH
Confidence 34445455443 89999999999999 4789999999999999999974 2256788877555443
No 401
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=80.46 E-value=1.8 Score=35.41 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=50.9
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCCCccEEEecccc
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQYIPPADAYFFKLVF 263 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~~~p~~D~i~~~~~l 263 (360)
+|.-+|+|+++.+.+..-...+.+++.... ++.++..++ ..++.+ ..|+.+-..+.|+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiia--- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIA--- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEec---
Confidence 466789998887766444444678888888 555543321 123332 23332224578988764
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.|......+++++...+++ +..++
T Consensus 77 --vPs~~~~~~~~~l~~~l~~----~~~ii 100 (157)
T PF01210_consen 77 --VPSQAHREVLEQLAPYLKK----GQIII 100 (157)
T ss_dssp --S-GGGHHHHHHHHTTTSHT----T-EEE
T ss_pred --ccHHHHHHHHHHHhhccCC----CCEEE
Confidence 3555567889999999987 55544
No 402
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=80.27 E-value=9.4 Score=29.94 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCC
Q 018116 272 LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 272 ~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 351 (360)
..+++++++.++| ||.+.-.. +...+++.|.++||.+.+....++
T Consensus 70 ~e~~~~l~~~~~~---~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~ 114 (124)
T PF05430_consen 70 EELFKKLARLSKP---GGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGR 114 (124)
T ss_dssp HHHHHHHHHHEEE---EEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STT
T ss_pred HHHHHHHHHHhCC---CcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCC
Confidence 3589999999999 66553310 224578899999999988887777
Q ss_pred ceeEEEEeC
Q 018116 352 LKSLIEVYP 360 (360)
Q Consensus 352 ~~~vi~~~~ 360 (360)
-.-++.+.+
T Consensus 115 Kr~~~~a~~ 123 (124)
T PF05430_consen 115 KREMLRAVK 123 (124)
T ss_dssp SSEEEEEEC
T ss_pred cchheEEEc
Confidence 666666543
No 403
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=80.15 E-value=2 Score=33.24 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.+.|++|||+.+.+ +++.++.+|+.|.+.|.++...
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 5799999999999999999985
No 404
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=80.12 E-value=2 Score=38.49 Aligned_cols=39 Identities=8% Similarity=-0.004 Sum_probs=29.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVAN 233 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~ 233 (360)
-..++|||+|||.|--.+...... .+++..+|. ..+++.
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~ 154 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRL 154 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheee
Confidence 457899999999998887776653 267777787 666643
No 405
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.77 E-value=7.3 Score=35.73 Aligned_cols=84 Identities=8% Similarity=-0.040 Sum_probs=47.5
Q ss_pred CCEEEEeCCCCc--hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHH
Q 018116 196 LGSIVDVGGGNG--GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 196 ~~~iLDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~ 272 (360)
..+|.=||+|.- .++..+.+.....+++++|. ++..+.+.+..-......+..+...++|+|++.- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 357888998852 23344444322247899998 6666655432111111112111234689988754 444456
Q ss_pred HHHHHHHHhccC
Q 018116 273 KILKKCREAIAG 284 (360)
Q Consensus 273 ~~L~~~~~~L~p 284 (360)
.+++.+...+++
T Consensus 81 ~v~~~l~~~l~~ 92 (307)
T PRK07502 81 AVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHhhCCC
Confidence 677888778888
No 406
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=79.71 E-value=2.9 Score=36.29 Aligned_cols=43 Identities=28% Similarity=0.331 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHH
Q 018116 30 LSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRL 79 (360)
Q Consensus 30 ~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~ 79 (360)
....+|+.|.+.|-||.= ...+..|||+.+|++ ...+...||-
T Consensus 159 rQ~~vL~~A~~~GYFd~P----R~~~l~dLA~~lGIS---kst~~ehLRr 201 (215)
T COG3413 159 RQLEVLRLAYKMGYFDYP----RRVSLKDLAKELGIS---KSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHHcCCCCCC----ccCCHHHHHHHhCCC---HHHHHHHHHH
Confidence 456799999999999983 589999999999995 4555555553
No 407
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=79.58 E-value=1.5 Score=33.09 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=38.2
Q ss_pred HhCcchhhhh---CCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHS---HGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~---~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.-.||+.|.. .+.++++++|++++++ ++..++..|+.|...|++-.+-
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~---~~~~v~~al~~L~~eG~IYsTi 99 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQLGM---SENEVRKALDFLSNEGHIYSTI 99 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHSTS----HHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHhCc---CHHHHHHHHHHHHhCCeEeccc
Confidence 4556666654 2368999999999999 5789999999999999997654
No 408
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=79.44 E-value=1.9 Score=35.50 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 50 HGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 50 ~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+++|+|++||++++|+ +...+..-|+.|...|++.+..
T Consensus 38 s~~Pmtl~Ei~E~lg~---Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 38 SRKPLTLDEIAEALGM---SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred cCCCccHHHHHHHHCC---CcchHHHHHHHHHhcchHHhhh
Confidence 3489999999999999 6789999999999999998875
No 409
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=79.44 E-value=15 Score=31.07 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec--hHHHhcCCCCCCeEEEeCCCCCCC---------CCc-cEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL--PHAVANMPQTENLKYIAGDMFQYI---------PPA-DAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~--~~~~~~a~~~~ri~~~~~D~~~~~---------p~~-D~i 257 (360)
.++..|++.|.-.|+-++.++.. -...+++++|+ ...-..|.+.++|.|+.++-..+- ..| -+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 35678999999888766665542 23468888887 222234444889999999876631 122 344
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCc
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKED 303 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~ 303 (360)
++-..-|+. +.+.+.|+-...+|.. |-+++|.|...++-+.
T Consensus 148 vilDsdHs~--~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp~ 188 (237)
T COG3510 148 VILDSDHSM--EHVLAELKLLAPLLSA---GDYLVVEDSNVNDLPG 188 (237)
T ss_pred EEecCCchH--HHHHHHHHHhhhHhhc---CceEEEecccccCCCC
Confidence 555555533 3456678888888888 8899999988776553
No 410
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=79.32 E-value=2.3 Score=32.75 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
.-.||+.| .+|..+ +|.+..+|++.++. ....++|+.=. -|.|++.+ .|.|.||+.++
T Consensus 58 RQ~Al~~A------~~L~~~-Gp~~~~~l~~~~~~-----~~A~~IL~~N~-YGWFeRv~------rGvY~LT~~G~ 115 (118)
T PF09929_consen 58 RQDALRCA------AALAEH-GPSRPADLRKATGV-----PKATSILRDNH-YGWFERVE------RGVYALTPAGR 115 (118)
T ss_pred HHHHHHHH------HHHHHc-CCCCHHHHHHhcCC-----ChHHHHHHhCc-ccceeeec------cceEecCcchh
Confidence 44566666 355543 89999999999998 34566666544 79999998 69999999876
No 411
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.19 E-value=31 Score=29.94 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=51.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec--hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL--PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDE 269 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~--~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~ 269 (360)
++.+.||-.||..|+.+-++++.| .++++...-. +.|.+.+. ..++.....|+. .++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~-~~gl~~~kLDV~------------------~~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI-QFGLKPYKLDVS------------------KPE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH-hhCCeeEEeccC------------------ChH
Confidence 567889999999999999999987 4667777665 44444332 333555555542 456
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEE
Q 018116 270 DCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+++++..+++.- | .|+|=+
T Consensus 66 ~V~~v~~evr~~--~---~Gkld~ 84 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--P---DGKLDL 84 (289)
T ss_pred HHHHHHHHHhhC--C---CCceEE
Confidence 677888887654 5 677743
No 412
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.68 E-value=9.7 Score=34.99 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=67.7
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCC-----CC----CCC--CccEE
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDM-----FQ----YIP--PADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~-----~~----~~p--~~D~i 257 (360)
.+.+.++|-+|+| .|..+...++.+...+++++|+ +.-++.|++ ..-+......- .+ ... .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 5678999999999 5777788888998889999999 888988886 22222222211 01 011 28888
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
+-...++ ..++.+..++++ ||.+++...-.+.
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAEE 278 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc---CCEEEEeccCCCc
Confidence 7766654 456777888999 9998887765443
No 413
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=78.61 E-value=2.7 Score=37.88 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+..++++||++++- |.+..-++.-|+.|...|++++++ +|.|..|..+-
T Consensus 136 ~~~~~~~ia~~l~p-~is~~ev~~sL~~L~~~glikk~~------~g~y~~t~~~l 184 (271)
T TIGR02147 136 FADDPEELAKRCFP-KISAEQVKESLDLLERLGLIKKNE------DGFYKQTDKAV 184 (271)
T ss_pred CCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHCCCeeECC------CCcEEeeccee
Confidence 34489999999992 115678999999999999999987 58899887643
No 414
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=78.53 E-value=1.8 Score=38.68 Aligned_cols=49 Identities=37% Similarity=0.479 Sum_probs=42.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV 91 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~ 91 (360)
+..+.+.|...||..+=+||.+++|+ +..-+.|+|+-|...|++++.+.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEEe
Confidence 35567778777788999999999999 57899999999999999999874
No 415
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=78.51 E-value=4.7 Score=27.30 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=31.5
Q ss_pred CCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPI-TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~-t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..+ |..+||+.+++ +..-+++-|+.|.+.|+++...
T Consensus 21 g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 21 GDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp TSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 3577 99999999999 5688999999999999998875
No 416
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=78.28 E-value=9 Score=34.71 Aligned_cols=82 Identities=15% Similarity=0.036 Sum_probs=51.9
Q ss_pred CEEEEeCCC--CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe-CCC-CCCCCCccEEEeccccccCChhHH
Q 018116 197 GSIVDVGGG--NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIA-GDM-FQYIPPADAYFFKLVFHAFGDEDC 271 (360)
Q Consensus 197 ~~iLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~-~D~-~~~~p~~D~i~~~~~lh~~~~~~~ 271 (360)
.+|+=+|.| .|.++..+.++.....+++.|. ...++.+... .+.... .+. ......+|+|+.+ .|-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~Viva-----vPi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIVA-----VPIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEEe-----ccHHHH
Confidence 466777766 4566677777766777788888 5555555421 122211 222 2234468999875 366667
Q ss_pred HHHHHHHHHhccC
Q 018116 272 LKILKKCREAIAG 284 (360)
Q Consensus 272 ~~~L~~~~~~L~p 284 (360)
..+++++...|++
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 7889999888888
No 417
>PTZ00357 methyltransferase; Provisional
Probab=78.17 E-value=4.7 Score=40.76 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=75.1
Q ss_pred CChhHHhhcCCcHHHHHHHHhhhCcchhHH------------HH------HHHhhhh--cCCCCEEEEeCCCCchHHHHH
Q 018116 154 KNYWDYMNQNPGLSQRFNQAMISDSEMAIF------------IV------KDCCRKI--FEGLGSIVDVGGGNGGFSKII 213 (360)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~------------~~------~~~~~~~--~~~~~~iLDvG~G~G~~~~~l 213 (360)
...|+.+++|+-....|.+++......... .+ +.+.+.. ......|+-||+|-|-+....
T Consensus 639 S~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdra 718 (1072)
T PTZ00357 639 SGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDEC 718 (1072)
T ss_pred hhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHH
Confidence 356788888888877787776543211000 00 0011100 012246899999999988777
Q ss_pred HHHCC----CCeEEEeec-hHHH----hcC-C-----C-----CCCeEEEeCCCCC-CCC-------------CccEEEe
Q 018116 214 SEAFP----GIKCTVLDL-PHAV----ANM-P-----Q-----TENLKYIAGDMFQ-YIP-------------PADAYFF 259 (360)
Q Consensus 214 ~~~~p----~~~~~~~D~-~~~~----~~a-~-----~-----~~ri~~~~~D~~~-~~p-------------~~D~i~~ 259 (360)
+++.. .+++.+++- |+.+ ..- . . .++|+++..|+.+ ..+ .+|++++
T Consensus 719 LrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 719 LHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred HHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH
Confidence 76653 456777776 4522 110 1 1 3579999999987 221 4898875
Q ss_pred ccccccCCh-hHHHHHHHHHHHhccC
Q 018116 260 KLVFHAFGD-EDCLKILKKCREAIAG 284 (360)
Q Consensus 260 ~~~lh~~~~-~~~~~~L~~~~~~L~p 284 (360)
..|--|.| +-..+.|.-+.+.|++
T Consensus 799 -ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 799 -ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred -hhhcccccccCCHHHHHHHHHhhhh
Confidence 33444443 3334567777776763
No 418
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=78.09 E-value=2.3 Score=37.87 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=40.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
...|.+.|... +..++.|||+.+|+ ++.-++|-|+.|.+.|++.+..
T Consensus 7 ~~~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 7 HQILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 34577788764 79999999999999 5688999999999999999975
No 419
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.86 E-value=22 Score=33.02 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=54.9
Q ss_pred CCCCEEEEeCCCC-chHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhH
Q 018116 194 EGLGSIVDVGGGN-GGFSKIISEA-FPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDED 270 (360)
Q Consensus 194 ~~~~~iLDvG~G~-G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~ 270 (360)
.++.+||-+|||. |.++..++++ ....+++++|. ++-++.++..+.. +...+. ....++|+|+-.-- . ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~-~~~~g~d~viD~~G--~---~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDI-PEDLAVDHAFECVG--G---RG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhh-hhccCCcEEEECCC--C---Cc
Confidence 4578999999763 4455666765 55678888887 6555555432221 111111 11124888874321 0 00
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
....++...+.|++ ||+++++-.
T Consensus 235 ~~~~~~~~~~~l~~---~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRP---QGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcC---CcEEEEEee
Confidence 12457788889999 999988764
No 420
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=77.55 E-value=3.1 Score=35.53 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
-+.|..|||+.+|++ +...+.+.|+.|...|++.+..
T Consensus 24 ~~~~~~ela~~~~~~--s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 24 YPPSIREIARAVGLR--SPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCcHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEecCC
Confidence 478999999999994 2688999999999999999984
No 421
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.29 E-value=11 Score=34.68 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=68.8
Q ss_pred EEEeCCCCchHHHHHHHHCCCCeEE-Eeec-hHHHhcCCC-CCCeEEEeCCCCC----CCCCccEEEeccccccCCh---
Q 018116 199 IVDVGGGNGGFSKIISEAFPGIKCT-VLDL-PHAVANMPQ-TENLKYIAGDMFQ----YIPPADAYFFKLVFHAFGD--- 268 (360)
Q Consensus 199 iLDvG~G~G~~~~~l~~~~p~~~~~-~~D~-~~~~~~a~~-~~ri~~~~~D~~~----~~p~~D~i~~~~~lh~~~~--- 268 (360)
|+|+=||.|.++..+.+. +.+++ .+|+ +.+++.-+. .+. .+..+|+.+ ..|+.|+++...-...++.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999999876 46654 5887 666554432 122 445577765 2457888877544433331
Q ss_pred -----hHHHHHHHHHHHhc---cCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 269 -----EDCLKILKKCREAI---AGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 269 -----~~~~~~L~~~~~~L---~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
+..-.++....+++ +| .++++|.+..-. .. .......+|.+.|++.|
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P-----~~~v~ENV~~l~------------------~~--~~~~~~~~i~~~l~~~G 132 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKP-----KFFLLENVKGLV------------------SH--DKGRTFKVIIETLEELG 132 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCC-----CEEEeeccHHHH------------------hc--ccchHHHHHHHHHHhCC
Confidence 11223344444444 55 577777553210 00 11235577888889999
Q ss_pred Ccee
Q 018116 341 FTHY 344 (360)
Q Consensus 341 f~~~ 344 (360)
|.+.
T Consensus 133 Y~v~ 136 (315)
T TIGR00675 133 YKVY 136 (315)
T ss_pred CEEE
Confidence 8753
No 422
>PF13730 HTH_36: Helix-turn-helix domain
Probab=77.20 E-value=2.6 Score=27.52 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=26.9
Q ss_pred CHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 018116 55 TLSELVSALKIQPTKTSNLFRFMRLLVHMGLF 86 (360)
Q Consensus 55 t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l 86 (360)
|.+.||+.+|+ +.+-+.+.++.|...|++
T Consensus 27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 89999999999 578999999999999985
No 423
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=77.17 E-value=34 Score=28.12 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=52.8
Q ss_pred eCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC------CCCccEEEeccccccCChhHHH
Q 018116 202 VGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY------IPPADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 202 vG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~------~p~~D~i~~~~~lh~~~~~~~~ 272 (360)
|=||+|..+..+++.+ .+.+++++-. ++-.+. ..+++++.+|+.++ ..++|.|+....-. ..+ .
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~--~~~--~ 75 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP--PKD--V 75 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST--TTH--H
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhh--ccc--c
Confidence 3467788777777654 3578888877 554444 77899999999873 23799888755321 221 4
Q ss_pred HHHHHHHHhccCCCCCcEEEEEee
Q 018116 273 KILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 273 ~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
...+++.++++..+ =.+++++-.
T Consensus 76 ~~~~~~~~a~~~~~-~~~~v~~s~ 98 (183)
T PF13460_consen 76 DAAKNIIEAAKKAG-VKRVVYLSS 98 (183)
T ss_dssp HHHHHHHHHHHHTT-SSEEEEEEE
T ss_pred cccccccccccccc-cccceeeec
Confidence 44555555554311 135555443
No 424
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=76.65 E-value=2.9 Score=34.65 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=39.5
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
-.|..+||+.+|+ +.+-+.|.+..|...+++.+.. .+.|.++|.-
T Consensus 75 ~~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~------~G~Y~iNP~~ 119 (165)
T PF05732_consen 75 VATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR------NGAYMINPNF 119 (165)
T ss_pred EeeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc------CCeEEECcHH
Confidence 4588999999999 5688999999999999999986 5889998863
No 425
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=76.57 E-value=2.4 Score=25.59 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=22.0
Q ss_pred CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 55 TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 55 t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
|+.|+|+.+|++ .+.||.....|++...
T Consensus 1 ti~e~A~~~gvs-------~~tlR~ye~~Gll~~~ 28 (38)
T PF00376_consen 1 TIGEVAKLLGVS-------PRTLRYYEREGLLPPP 28 (38)
T ss_dssp EHHHHHHHHTS--------HHHHHHHHHTTSS-SS
T ss_pred CHHHHHHHHCCC-------HHHHHHHHHCCCCCCC
Confidence 468999999995 4888999999999443
No 426
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=76.42 E-value=4.3 Score=28.73 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=24.7
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|+..|+. +.|+|+++||.++|++ . .++-.+|..+-=++++.
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~~---~---e~v~~~L~~~p~tEyD~ 69 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGWP---V---EEVRAALAAMPDTEYDD 69 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT-----H---HHHHHHHHH-TTSEEET
T ss_pred HHHHHHc-CCCcCHHHHHHHHCCC---H---HHHHHHHHhCCCceEcC
Confidence 6777887 6899999999999983 3 44444444444455553
No 427
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=76.17 E-value=29 Score=31.73 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=52.5
Q ss_pred CCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCC-CCccEEEeccccccCChhHH
Q 018116 195 GLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYI-PPADAYFFKLVFHAFGDEDC 271 (360)
Q Consensus 195 ~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~-p~~D~i~~~~~lh~~~~~~~ 271 (360)
+..++|=+||| .|.++..+++.+....++++|. +.-++.+....-+ |..+.. .++|+|+-.-- .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i-----~~~~~~~~g~Dvvid~~G-----~--- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL-----DPEKDPRRDYRAIYDASG-----D--- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc-----ChhhccCCCCCEEEECCC-----C---
Confidence 35678888865 5667788888765444667777 5555555421111 111111 25898875422 1
Q ss_pred HHHHHHHHHhccCCCCCcEEEEEee
Q 018116 272 LKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 272 ~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
...++.+.+.|++ +|+++++-.
T Consensus 211 ~~~~~~~~~~l~~---~G~iv~~G~ 232 (308)
T TIGR01202 211 PSLIDTLVRRLAK---GGEIVLAGF 232 (308)
T ss_pred HHHHHHHHHhhhc---CcEEEEEee
Confidence 2356778888999 999988764
No 428
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=76.13 E-value=6.6 Score=37.80 Aligned_cols=101 Identities=11% Similarity=0.043 Sum_probs=57.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC---CccEEEe
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPG--IKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YIP---PADAYFF 259 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~p---~~D~i~~ 259 (360)
+..+.|+|.|.|.-.-++....+. -.++.+|. ..+...... ...+-.....++. +.+ +||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 456777777766544333333333 35788898 555544321 1111111112222 322 4999999
Q ss_pred ccccccCChh-HHHHHHHHHH-HhccCCCCCcEEEEEeeecC
Q 018116 260 KLVFHAFGDE-DCLKILKKCR-EAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ~~~lh~~~~~-~~~~~L~~~~-~~L~p~~~gG~lli~e~~~~ 299 (360)
.+++|++... ....+.++.. +..++ |+.+++++.-..
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~~ 319 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGTT 319 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCCc
Confidence 9999998654 3334444444 44566 889999886544
No 429
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=75.73 E-value=19 Score=35.66 Aligned_cols=96 Identities=7% Similarity=0.073 Sum_probs=59.8
Q ss_pred CCCCEEEEeCCCCc-hHHHHHHHHCCCCeEEEeec-hHHHhcCCCC-CC-eEEE--e-------------CCCC------
Q 018116 194 EGLGSIVDVGGGNG-GFSKIISEAFPGIKCTVLDL-PHAVANMPQT-EN-LKYI--A-------------GDMF------ 248 (360)
Q Consensus 194 ~~~~~iLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~r-i~~~--~-------------~D~~------ 248 (360)
.++.+|+-+|||.- ..++..++.+. .+++++|. ++..+.++.. .. +.+- . .|+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 35789999999964 56666777764 58999999 8888777652 11 1111 1 0100
Q ss_pred -CC-CCCccEEEeccccccCChhHHHHH-HHHHHHhccCCCCCcEEEEEee
Q 018116 249 -QY-IPPADAYFFKLVFHAFGDEDCLKI-LKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 249 -~~-~p~~D~i~~~~~lh~~~~~~~~~~-L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.. ..++|+++-.-.. +......+ .+...+.++| ||.++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCC---CCEEEEEcc
Confidence 00 1358998865432 22112234 5899999999 888776643
No 430
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=75.38 E-value=1.6 Score=33.07 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=33.5
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..|++.|... +.++-++||+.+|+ +..-++++|..|...|++....
T Consensus 16 ~~Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 16 VRILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3467777653 78999999999999 5689999999999999996653
No 431
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=75.37 E-value=3 Score=38.60 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=43.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
...|.+.|.. +.+.+..+||+++|+ +...+.+.++.|...|++-.... +..|++.+..
T Consensus 6 ~~~il~~L~~-~~~~s~~~LA~~lgv---sr~tV~~~l~~L~~~G~~i~~~~-----~~Gy~L~~~~ 63 (319)
T PRK11886 6 MLQLLSLLAD-GDFHSGEQLGEELGI---SRAAIWKHIQTLEEWGLDIFSVK-----GKGYRLAEPL 63 (319)
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceEEec-----CCeEEecCcc
Confidence 3456677765 368999999999999 56899999999999999443321 3468875543
No 432
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.55 E-value=3.9 Score=36.83 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCeEEEeCCCCC-----CCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 237 TENLKYIAGDMFQ-----YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 237 ~~ri~~~~~D~~~-----~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
..||.++.+|+.+ +..+.|.|++..+=.++++.+.-.++.++.+-+.| |.++++-...
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifRtaa 368 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFRTAA 368 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEeccc
Confidence 5789999999866 23369999999999989999999999999999999 8888875543
No 433
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=74.48 E-value=2.9 Score=37.30 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=40.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
...|.+.|... +..++.|||+.+++ ++.-++|-|..|.+.|++.+..
T Consensus 7 ~~~Il~~l~~~-~~~~~~ela~~l~v---S~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 7 HDAIIELVKQQ-GYVSTEELVEHFSV---SPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 45577788764 78999999999999 5688999999999999999985
No 434
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=74.11 E-value=2.2 Score=33.08 Aligned_cols=66 Identities=23% Similarity=0.417 Sum_probs=46.2
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHcCCC--CCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSALKIQ--PTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~~~~--p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
+..+.-|++.|...+.+.|++||.+.+.-. ..+..-+.|-|+.|...|++.+.... +...+|....
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~--~~~~~Y~~~~ 74 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFG--DGESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEET--TSEEEEEESS
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcC--CCcceEeecC
Confidence 345667788887755799999999988531 11345699999999999999997631 1134566654
No 435
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=73.82 E-value=3.1 Score=25.71 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=20.9
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCC
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQ 66 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~ 66 (360)
++..|...|... +..|+.+||+.+|++
T Consensus 4 ~D~~Il~~Lq~d-~r~s~~~la~~lglS 30 (42)
T PF13404_consen 4 LDRKILRLLQED-GRRSYAELAEELGLS 30 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS-
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHHCcC
Confidence 466778888874 899999999999995
No 436
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=73.29 E-value=5.2 Score=27.93 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=37.6
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.|...++. +..|.+||-+.+|+ +..-+...|..|...|++.+..
T Consensus 9 ~IL~~ls~--~c~TLeeL~ekTgi---~k~~LlV~LsrL~k~GiI~Rkw 52 (72)
T PF05584_consen 9 KILIILSK--RCCTLEELEEKTGI---SKNTLLVYLSRLAKRGIIERKW 52 (72)
T ss_pred HHHHHHHh--ccCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 34556665 59999999999999 6788999999999999999873
No 437
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=72.68 E-value=4.3 Score=35.87 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=40.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
...|.+.|.+. +..+++|||+.+++ ++.-++|-|..|...|.+.+..
T Consensus 6 ~~~Il~~l~~~-~~~~~~eLa~~l~V---S~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 6 QQAIVDLLLNH-TSLTTEALAEQLNV---SKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 34467777764 79999999999999 6789999999999999998864
No 438
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=72.56 E-value=42 Score=29.61 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=65.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-----hHHHhcCCCCCCeEEEeCCCCCCC------CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-----PHAVANMPQTENLKYIAGDMFQYI------PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~ri~~~~~D~~~~~------p~~D~i~~~ 260 (360)
.++..+||-+|+++|....++..-- |.--+..++. ...+..|++..+|--+..|...|. +-.|+|++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 5788999999999999887777643 4444555554 245566666677777777876653 23777654
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.+-+ || +++-+-=++...|++ ||.++|.--....
T Consensus 233 Dvaq--pd-q~RivaLNA~~FLk~---gGhfvisikanci 266 (317)
T KOG1596|consen 233 DVAQ--PD-QARIVALNAQYFLKN---GGHFVISIKANCI 266 (317)
T ss_pred cCCC--ch-hhhhhhhhhhhhhcc---CCeEEEEEecccc
Confidence 3322 33 344444567788999 8988876544433
No 439
>PRK12423 LexA repressor; Provisional
Probab=72.09 E-value=3.9 Score=35.12 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=31.3
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-|..|||+.+|+. +...++..|+.|...|+++...
T Consensus 25 ~Ps~~eia~~~g~~--s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 25 PPSLAEIAQAFGFA--SRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEecC
Confidence 57999999999963 3567899999999999999975
No 440
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=71.84 E-value=4 Score=39.59 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=40.9
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
|-..|.. +|.|+.|||+.+|+ +...+.+.|+.| .|+|...+. |...+|+++..
T Consensus 5 ~~~~L~~--g~~~~~eL~~~l~~---sq~~~s~~L~~L--~~~V~~~~~---gr~~~Y~l~~~ 57 (442)
T PRK09775 5 LTTLLLQ--GPLSAAELAARLGV---SQATLSRLLAAL--GDQVVRFGK---ARATRYALLRP 57 (442)
T ss_pred HHHHHhc--CCCCHHHHHHHhCC---CHHHHHHHHHHh--hcceeEecc---CceEEEEeccc
Confidence 3455665 89999999999999 689999999999 888877663 11345777664
No 441
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=71.59 E-value=7.6 Score=32.81 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=53.2
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------CCCeEEEeCCCCCCCCCccEE
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------------------TENLKYIAGDMFQYIPPADAY 257 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------~~ri~~~~~D~~~~~p~~D~i 257 (360)
+|.-+|.|.=++..+++-+-.+.+++++|. ++.++...+ ..|+.+. .|+.......|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 466677775444433333334789999999 776665442 2334433 1211113358887
Q ss_pred Eeccc-cc-c--C-ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 258 FFKLV-FH-A--F-GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 258 ~~~~~-lh-~--~-~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
+++-- -. . - +-....++++.+.+.+++ |.++|++...+..
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvppG 125 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPPG 125 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSSTT
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEEe
Confidence 66321 11 0 0 112366789999999998 8888888766553
No 442
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=70.98 E-value=3.9 Score=27.84 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
.+++.+++.++.|.+. ......-++.+.+.|+++.++ +++++|+.|.
T Consensus 19 ~Gi~~~~~~~~~g~~~--~~~~~~~l~~l~~~Gll~~~~-------~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGIDF--AEEFQKELEELQEDGLLEIDG-------GRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT--T--HHH-HHHHHHHHHTTSEEE-S-------SEEEE-TTTG
T ss_pred CCcCHHHHHHHHCcCH--HHHHHHHHHHHHHCCCEEEeC-------CEEEECcccC
Confidence 5889999999999841 344577899999999999994 9999998764
No 443
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=70.96 E-value=3.7 Score=36.69 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=41.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|.+.|... +.+++.|||+.+++ ++.-++|=|+.|...|++.+..
T Consensus 7 ~~~Il~~L~~~-~~v~v~eLa~~l~V---S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 7 QAAILEYLQKQ-GKTSVEELAQYFDT---TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHHc-CCEEHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 45677888874 79999999999999 5688999999999999999985
No 444
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=70.83 E-value=7.7 Score=34.42 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=49.4
Q ss_pred CCEEEEeCCCCchHHHHH---HHHC--CCCeEEEeec-hHHHh------------------------------cCCC---
Q 018116 196 LGSIVDVGGGNGGFSKII---SEAF--PGIKCTVLDL-PHAVA------------------------------NMPQ--- 236 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l---~~~~--p~~~~~~~D~-~~~~~------------------------------~a~~--- 236 (360)
...|+|.||=.|..++.+ ++.+ ++-++.++|. ..+-+ ...+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 478999999999876544 3333 4556778775 31111 0111
Q ss_pred -CCCeEEEeCCCCCCCCC---ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 237 -TENLKYIAGDMFQYIPP---ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 237 -~~ri~~~~~D~~~~~p~---~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.+++.++.|.|.+..|. -.+.++ ++=.++-+. ....|..++..|.| ||.|++
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll-~lD~DlYes-T~~aLe~lyprl~~---GGiIi~ 210 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALL-HLDCDLYES-TKDALEFLYPRLSP---GGIIIF 210 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEE-EE---SHHH-HHHHHHHHGGGEEE---EEEEEE
T ss_pred CcccEEEECCcchhhhccCCCccEEEE-EEeccchHH-HHHHHHHHHhhcCC---CeEEEE
Confidence 36899999998764442 222222 111122222 46789999999999 665555
No 445
>PF13518 HTH_28: Helix-turn-helix domain
Probab=70.67 E-value=4.9 Score=25.63 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=26.2
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGL 85 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~ 85 (360)
..|+.++|+.+|+ +...+.+|++.....|+
T Consensus 12 g~s~~~~a~~~gi---s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 12 GESVREIAREFGI---SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCCHHHHHHHHCC---CHhHHHHHHHHHHhcCH
Confidence 3499999999999 56899999999988875
No 446
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=70.59 E-value=5.4 Score=32.72 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=57.0
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-CCCeEE-EeCCCCCCC----CCccEEEeccccccC----
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-TENLKY-IAGDMFQYI----PPADAYFFKLVFHAF---- 266 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~ri~~-~~~D~~~~~----p~~D~i~~~~~lh~~---- 266 (360)
++.+-+|...-.+ ..++-++...++..++... ++.-.. .+|++- ...|+.+.+ ..||++.+.+++.|.
T Consensus 3 ~~g~V~GS~~Pwv-Ev~aL~~GA~~iltveyn~-L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGR 80 (177)
T PF03269_consen 3 KSGLVVGSMQPWV-EVMALQHGAAKILTVEYNK-LEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGR 80 (177)
T ss_pred ceEEEEecCCchh-hHHHHHcCCceEEEEeecc-cccCcccccccccccHHHHHHHHHHhhccchhhheechhccccccc
Confidence 4566666664432 3344444455666666522 111111 334332 233443322 259999998888765
Q ss_pred -----ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 267 -----GDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 267 -----~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
++.--.+.+.++++.||| ||.|++.-++-.+
T Consensus 81 YGDPidp~Gdl~~m~~i~~vLK~---GG~L~l~vPvG~d 116 (177)
T PF03269_consen 81 YGDPIDPIGDLRAMAKIKCVLKP---GGLLFLGVPVGTD 116 (177)
T ss_pred cCCCCCccccHHHHHHHHHhhcc---CCeEEEEeecCCc
Confidence 111224678889999999 9999998887654
No 447
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=70.59 E-value=6.5 Score=32.68 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=42.0
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHcCCC--CCCcccHHHHHHHHHhCCceeccc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSALKIQ--PTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~~~~--p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-.+.-|++.|...+++.|++||.+.+.-. ..+..-+.|.|+.|...|+|.+-.
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 445677788887655799999999887431 114577999999999999999975
No 448
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=70.28 E-value=17 Score=32.47 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=64.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC---CccEEEeccccccCChh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIP---PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~p---~~D~i~~~~~lh~~~~~ 269 (360)
+.++-.-+|+|+..|+++-.|.++ +.+++.+|...|.+..-..++|+....|-|+-.| ..|-.+|-.|= .
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE----k- 281 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE----K- 281 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc----C-
Confidence 457788999999999999999998 8899999998888877778899999999888433 47666654331 2
Q ss_pred HHHHHHHHHHHhccC
Q 018116 270 DCLKILKKCREAIAG 284 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p 284 (360)
-.++-..+..+|..
T Consensus 282 -P~rv~~li~~Wl~n 295 (358)
T COG2933 282 -PARVAALIAKWLVN 295 (358)
T ss_pred -cHHHHHHHHHHHHc
Confidence 23455667777875
No 449
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=70.18 E-value=4.4 Score=36.48 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=41.4
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
....|.+.|... +..++.|||+.+++ ++.-++|=|..|.+.|++.+..
T Consensus 18 R~~~Il~~L~~~-~~vtv~eLa~~l~V---S~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 18 RREQIIQRLRQQ-GSVQVNDLSALYGV---STVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHHc-CCEeHHHHHHHHCC---CHHHHHHHHHHHHhCCCeEEEe
Confidence 345677888774 68999999999999 5688999999999999999885
No 450
>PRK00215 LexA repressor; Validated
Probab=70.03 E-value=5.8 Score=34.02 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHcCC-CCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPITLSELVSALKI-QPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~-~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.+.|..|||+.+|+ + ...+.++|+.|...|++++..
T Consensus 21 ~~~~s~~ela~~~~~~~---~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 21 GYPPSRREIADALGLRS---PSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCCHHHHHHHhCCCC---hHHHHHHHHHHHHCCCEEeCC
Confidence 357899999999999 5 478999999999999999875
No 451
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.94 E-value=8.3 Score=32.20 Aligned_cols=43 Identities=7% Similarity=0.169 Sum_probs=31.3
Q ss_pred CccEEEeccccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 253 PADAYFFKLVFHAFGD----------EDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
..|+|+++++||+++. +...+++.+++++|+| . .++|.-...|
T Consensus 50 ~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~---~-allIW~tt~P 102 (183)
T cd01842 50 RLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI---E-CLIVWNTAMP 102 (183)
T ss_pred ceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC---c-cEEEEecCCC
Confidence 3799999999999864 4466778888888888 4 5555555444
No 452
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=69.26 E-value=7.5 Score=36.46 Aligned_cols=35 Identities=31% Similarity=0.740 Sum_probs=29.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeech
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLP 228 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 228 (360)
+.+...++|||.|.|.++..+.-.| ++++.++|-.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegs 185 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGS 185 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccc
Confidence 5678899999999999998777665 7899999983
No 453
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=69.12 E-value=6.1 Score=30.47 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=35.0
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|.+.+. .+.|+.|||+.++++ ..-++-++--|...|++.-..
T Consensus 48 Il~lC~---~~~SVAEiAA~L~lP---lgVvrVLvsDL~~~G~v~v~~ 89 (114)
T PF05331_consen 48 ILELCR---RPLSVAEIAARLGLP---LGVVRVLVSDLADAGLVRVRA 89 (114)
T ss_pred HHHHHC---CCccHHHHHHhhCCC---chhhhhhHHHHHhCCCEEEeC
Confidence 444554 599999999999994 578888999999999998865
No 454
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=69.08 E-value=4.8 Score=29.78 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=33.0
Q ss_pred HHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHH
Q 018116 36 KGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLV 81 (360)
Q Consensus 36 ~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~ 81 (360)
..+.++||+..|-. ++.|-.|||+.+|+ +...+.|+=+.|.
T Consensus 40 ~l~~R~~i~~~Ll~--~~~tQrEIa~~lGi---S~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLN--GNMSQREIASKLGV---SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHhCC---ChhhhhHHHhhcc
Confidence 44568999998875 79999999999999 5677777766654
No 455
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=68.92 E-value=13 Score=32.01 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCchHH--HHHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEeCCCCC-CCCCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFS--KIISEAFPGIKCTVLDL--PHAVANMPQTENLKYIAGDMFQ-YIPPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~--~~l~~~~p~~~~~~~D~--~~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~~ 260 (360)
.+++||=||+|.-... ..|++. +.++++++. .+.+.......++.++.+++.. ...++|+|++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 4579999999975544 234443 678888875 2233332235589999988754 45679998874
No 456
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=68.91 E-value=33 Score=28.04 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=38.3
Q ss_pred CCCCEEEEeCCCCchHH--HHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFS--KIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQ-YIPPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~--~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~~ 260 (360)
-.+++||=||||.=..- ..|++. +.++++++. +..+.....+.+.+....+.+ +..++|+|++.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp-~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP-EICKEMKELPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC-ccCHHHHhccCcEEEecccChhcCCCceEEEEC
Confidence 36789999999865442 334443 677777763 322222223456666555544 45679998874
No 457
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=68.81 E-value=28 Score=30.35 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=42.4
Q ss_pred CCCCEEEEeCCCCchHHHH--HHHHCCCCeEEEe--ec-hHHHhcCCCCCCeEEEeCCCCC-CCCCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKI--ISEAFPGIKCTVL--DL-PHAVANMPQTENLKYIAGDMFQ-YIPPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~--l~~~~p~~~~~~~--D~-~~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~~ 260 (360)
....+||-||||.-..-.. |++. +.+++++ ++ +++.+.+. .++++++..++.. +..++++|++.
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~-~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKK-YGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHh-CCCEEEEeCCCChHHhCCCcEEEEC
Confidence 3567999999998775532 4443 4566655 45 55444433 6789999887754 45678888875
No 458
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=68.80 E-value=77 Score=27.43 Aligned_cols=96 Identities=13% Similarity=0.203 Sum_probs=54.6
Q ss_pred CCCCEEEEeCCCCc----hHHHHHHHHCCCCeEEEeec-hHHH-hc---CC---CCCCeEEEeCCCCC----CCCCccEE
Q 018116 194 EGLGSIVDVGGGNG----GFSKIISEAFPGIKCTVLDL-PHAV-AN---MP---QTENLKYIAGDMFQ----YIPPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G----~~~~~l~~~~p~~~~~~~D~-~~~~-~~---a~---~~~ri~~~~~D~~~----~~p~~D~i 257 (360)
...+.|+++.++.| .++.+.+.+..+-+++.+-. ++-. +. .. ..+.++|+.++-.+ .+.+.|++
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 35678999966544 33444555666667665543 2222 11 11 14567999887533 24478887
Q ss_pred EeccccccCChhHHH-HHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 258 FFKLVFHAFGDEDCL-KILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~-~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
+.- ...++.. ++|+.+. +.| .|.+++......
T Consensus 120 vVD-----c~~~d~~~~vl~~~~--~~~---~GaVVV~~Na~~ 152 (218)
T PF07279_consen 120 VVD-----CKREDFAARVLRAAK--LSP---RGAVVVCYNAFS 152 (218)
T ss_pred EEe-----CCchhHHHHHHHHhc--cCC---CceEEEEecccc
Confidence 652 3344444 6666543 445 577888766544
No 459
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=68.19 E-value=9.7 Score=36.89 Aligned_cols=103 Identities=19% Similarity=0.256 Sum_probs=69.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC----C------CCCccE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ----Y------IPPADA 256 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~----~------~p~~D~ 256 (360)
.....+|-||-|.|.+...+...+|..+.+++.+ |++++.++. ..|..++-.|-.. . ...||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 3456788888888999999999999999999999 999999985 3344444333322 1 114888
Q ss_pred EEe----ccccccCC--hh--HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 257 YFF----KLVFHAFG--DE--DCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 257 i~~----~~~lh~~~--~~--~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
++. .. -|.++ .. -+..+|..++..|+| .|.++|.-...+.
T Consensus 374 l~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 374 LMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPP---RGMFIINLVTRNS 421 (482)
T ss_pred EEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCc---cceEEEEEecCCc
Confidence 765 22 34432 22 245789999999999 6776555444443
No 460
>PRK08507 prephenate dehydrogenase; Validated
Probab=68.04 E-value=15 Score=33.10 Aligned_cols=79 Identities=16% Similarity=0.102 Sum_probs=45.5
Q ss_pred EEEEeCCCC--chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHH
Q 018116 198 SIVDVGGGN--GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKI 274 (360)
Q Consensus 198 ~iLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~ 274 (360)
+|.=||+|. |.++..+.+.....+++++|. ++..+.+.+..-+.. ..+. .+..++|+|++. .+++....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~-~~~~~aD~Vila-----vp~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSF-EELKKCDVIFLA-----IPVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCH-HHHhcCCEEEEe-----CcHHHHHHH
Confidence 466677764 344455554433357888898 666555443221111 1121 112248998875 366777888
Q ss_pred HHHHHHhccC
Q 018116 275 LKKCREAIAG 284 (360)
Q Consensus 275 L~~~~~~L~p 284 (360)
++.+.. +++
T Consensus 75 ~~~l~~-l~~ 83 (275)
T PRK08507 75 LPKLLD-IKE 83 (275)
T ss_pred HHHHhc-cCC
Confidence 888888 887
No 461
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=67.97 E-value=19 Score=33.43 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=53.7
Q ss_pred CCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCC--CCe-EEEeCCCCC---CCCCccEEEecccccc
Q 018116 194 EGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQT--ENL-KYIAGDMFQ---YIPPADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~ri-~~~~~D~~~---~~p~~D~i~~~~~lh~ 265 (360)
.+..+||-.||| .|.++..+++.....+++++|. ++-.+.+++. +.+ .....++.+ ....+|+++-.-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~---- 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS---- 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC----
Confidence 356788888875 4556667777653336888887 6666665541 111 111112111 112488887532
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.. ...++.+.++|++ ||+++++..
T Consensus 244 -G~---~~~~~~~~~~l~~---~G~iv~~G~ 267 (343)
T PRK09880 244 -GH---PSSINTCLEVTRA---KGVMVQVGM 267 (343)
T ss_pred -CC---HHHHHHHHHHhhc---CCEEEEEcc
Confidence 11 1346777888999 999998764
No 462
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=67.91 E-value=4.9 Score=35.87 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=41.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.-.|.++|.+. +.++++|||+.+++ ++.-++|=|+.|...|++.+..
T Consensus 7 ~~~Il~~l~~~-g~v~v~eLa~~~~V---S~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 7 HQKILELLKEK-GKVSVEELAELFGV---SEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHHHc-CcEEHHHHHHHhCC---CHHHHHHhHHHHHHCCcEEEEe
Confidence 34577888874 89999999999999 5788999999999999999986
No 463
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=66.92 E-value=22 Score=30.83 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCC--eEEEeec-hHHHhcCCC----------------------------------
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGI--KCTVLDL-PHAVANMPQ---------------------------------- 236 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~---------------------------------- 236 (360)
+++.++-|=-||+|+++.-+.--+++. ++.+-|+ +.+++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 467899999999999887665554432 6888899 888876541
Q ss_pred --------------CCCeEEEeCCCCCCC-------C-CccEEEeccc---cccC----ChhHHHHHHHHHHHhccCCCC
Q 018116 237 --------------TENLKYIAGDMFQYI-------P-PADAYFFKLV---FHAF----GDEDCLKILKKCREAIAGNGE 287 (360)
Q Consensus 237 --------------~~ri~~~~~D~~~~~-------p-~~D~i~~~~~---lh~~----~~~~~~~~L~~~~~~L~p~~~ 287 (360)
.......+.|++++. + ..|+|+.--- .-+| +.+-...+|..++.+|++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 123667888998832 2 3788876221 2224 234577899999999955
Q ss_pred CcEEEE
Q 018116 288 RGKVLI 293 (360)
Q Consensus 288 gG~lli 293 (360)
++.+.|
T Consensus 207 ~sVV~v 212 (246)
T PF11599_consen 207 RSVVAV 212 (246)
T ss_dssp T-EEEE
T ss_pred CcEEEE
Confidence 555555
No 464
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=65.93 E-value=4.2 Score=36.85 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=46.7
Q ss_pred CCCeEEEeCCCCCCCC-------CccEEEe-ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhh
Q 018116 237 TENLKYIAGDMFQYIP-------PADAYFF-KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT 308 (360)
Q Consensus 237 ~~ri~~~~~D~~~~~p-------~~D~i~~-~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~ 308 (360)
.-+|.|++.|.....+ -||+|++ ++..|.+.++ +.++++| ++ ++|+|...
T Consensus 199 ~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~---~A-~LvvEtaK---------- 256 (289)
T PF14740_consen 199 NVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAP---DA-VLVVETAK---------- 256 (289)
T ss_pred CcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCC---CC-EEEEEcch----------
Confidence 4567888877755332 3999866 4566666654 5556899 55 55555421
Q ss_pred hHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEE
Q 018116 309 EAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 309 ~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
.+.++.-- ...--.+.+.++++++||+....
T Consensus 257 ---fmvdLrKE----q~~~F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 257 ---FMVDLRKE----QLQEFVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred ---hheeCCHH----HHHHHHHHHHHHHHHCCCccccc
Confidence 01111100 01113467889999999986543
No 465
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=65.73 E-value=2.9 Score=30.78 Aligned_cols=84 Identities=17% Similarity=0.289 Sum_probs=44.9
Q ss_pred EEEeCCCCchHHHHHHHHC--CC---CeEEEe-ec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHH
Q 018116 199 IVDVGGGNGGFSKIISEAF--PG---IKCTVL-DL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDC 271 (360)
Q Consensus 199 iLDvG~G~G~~~~~l~~~~--p~---~~~~~~-D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~ 271 (360)
|.=|| .|.++.++++.+ .+ .++..+ +. ++-.+...+.-.+.+...+..+-....|+|++. .++...
T Consensus 2 I~iIG--~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila-----v~p~~~ 74 (96)
T PF03807_consen 2 IGIIG--AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA-----VKPQQL 74 (96)
T ss_dssp EEEES--TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE------S-GGGH
T ss_pred EEEEC--CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE-----ECHHHH
Confidence 34454 455555555443 12 566644 77 665555433222444432322223358998875 466777
Q ss_pred HHHHHHHHHhccCCCCCcEEEEE
Q 018116 272 LKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 272 ~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
..+++.+ ..+.+ ++++|.
T Consensus 75 ~~v~~~i-~~~~~----~~~vis 92 (96)
T PF03807_consen 75 PEVLSEI-PHLLK----GKLVIS 92 (96)
T ss_dssp HHHHHHH-HHHHT----TSEEEE
T ss_pred HHHHHHH-hhccC----CCEEEE
Confidence 8889988 55666 566653
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.73 E-value=6.8 Score=31.65 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=42.7
Q ss_pred HHHhCcchhhhhCCCCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCceeccc
Q 018116 38 AVELGIADIIHSHGRPITLSELVSALKI--QPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~~t~~ela~~~~~--~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
-.+..|++.|..++++.|+++|=..+.- ++.+..-+.|.|+.|...|+|++-.
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 3467889999876678999999887753 3335677999999999999999975
No 467
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=65.55 E-value=5.5 Score=38.50 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=54.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEE------Eeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCT------VLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFG 267 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~------~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~ 267 (360)
.+++|+=||||+=+.+.++--+-.+++++ ++|. +...+.|.+ +.+ ...+..+..+.+|+|++. .|
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF--~v~~~~Ea~~~ADvVviL-----lP 106 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGF--KVGTYEELIPQADLVINL-----TP 106 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCC--ccCCHHHHHHhCCEEEEc-----CC
Confidence 46899999999765544333333344444 2333 223333321 222 223322235679999864 36
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|.....+.+++...|+| |..|.+..-+
T Consensus 107 Dt~q~~v~~~i~p~LK~---Ga~L~fsHGF 133 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQ---GAALGYSHGF 133 (487)
T ss_pred hHHHHHHHHHHHhhCCC---CCEEEecCCc
Confidence 66666777899999999 7777765543
No 468
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=65.49 E-value=8.8 Score=31.60 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=51.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL--PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~ 272 (360)
..++|.-||.|+=..+.++.-+-.++++++-.. +...+.|++. .++ ..++.+....+|+|++. .||+...
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~-Gf~--v~~~~eAv~~aDvV~~L-----~PD~~q~ 74 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKAD-GFE--VMSVAEAVKKADVVMLL-----LPDEVQP 74 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHT-T-E--CCEHHHHHHC-SEEEE------S-HHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHC-CCe--eccHHHHHhhCCEEEEe-----CChHHHH
Confidence 357899999997766666655556888877666 3355555422 222 12222223369998763 4787777
Q ss_pred HHH-HHHHHhccCCCCCcEEEEEe
Q 018116 273 KIL-KKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 273 ~~L-~~~~~~L~p~~~gG~lli~e 295 (360)
++. +.+...|+| |..|++..
T Consensus 75 ~vy~~~I~p~l~~---G~~L~fah 95 (165)
T PF07991_consen 75 EVYEEEIAPNLKP---GATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHS-T---T-EEEESS
T ss_pred HHHHHHHHhhCCC---CCEEEeCC
Confidence 777 889999999 55555544
No 469
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=65.03 E-value=6.4 Score=34.13 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=37.2
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.|++.+.....+.|.+|||+++++ ++.-+++.+.+|+..|++..+-
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~i---S~~Tv~~~~~~~~~~~~~~~~~ 211 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALTI---SRTTARRYLEYCASRHLIIAEI 211 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhCc---cHHHHHHHHHHHHhCCeEEEEe
Confidence 456666641126899999999999 5688999999999999998863
No 470
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=65.03 E-value=20 Score=33.84 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C--CCC-ccEEEe--
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ-Y--IPP-ADAYFF-- 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~-~--~p~-~D~i~~-- 259 (360)
...+++|++|+.+.....+++.|+-++-.|++. .+.+..... .....+..+|+.. + ... ++.+..
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 467999999999999999999998888778777 555544431 2234555555433 1 000 111100
Q ss_pred -----------------------ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcc
Q 018116 260 -----------------------KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDK 304 (360)
Q Consensus 260 -----------------------~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~ 304 (360)
..+.-||++. ..+++.....++| +|.+++.+.+...+...
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~~---~~~v~~~e~~~~~p~gs 322 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLKP---GGKVLILEYIRGLPEGS 322 (364)
T ss_pred chhhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccCc---CceEEehhhcCcCCcCc
Confidence 1222333332 3457778888898 89999999887765544
No 471
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=64.73 E-value=29 Score=35.22 Aligned_cols=85 Identities=27% Similarity=0.364 Sum_probs=54.2
Q ss_pred EEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEeccccccCC
Q 018116 198 SIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHAFG 267 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~~~ 267 (360)
+|+=+ |.|.++..+++.+ .+..++++|. ++.++.+++ .....+.||..++ ..++|.+++.. . +
T Consensus 402 ~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~--~--d 474 (601)
T PRK03659 402 QVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITC--N--E 474 (601)
T ss_pred CEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe--C--C
Confidence 45544 5556666666543 3678999999 888888764 4577889998763 23588877632 1 3
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+++...+...+++ +.| ..+++.
T Consensus 475 ~~~n~~i~~~~r~-~~p---~~~Iia 496 (601)
T PRK03659 475 PEDTMKIVELCQQ-HFP---HLHILA 496 (601)
T ss_pred HHHHHHHHHHHHH-HCC---CCeEEE
Confidence 4444555555554 566 566665
No 472
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=64.63 E-value=34 Score=32.55 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=45.3
Q ss_pred CEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCC------CCCccEEEec
Q 018116 197 GSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQY------IPPADAYFFK 260 (360)
Q Consensus 197 ~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~~------~p~~D~i~~~ 260 (360)
.+||-|||| .|+.....+.+..+.++++.|. +.-++.+.. ..+++....|+.+. +.++|+|+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 468899996 3444444444445579999999 677777654 45899999999773 2368888764
No 473
>PRK11642 exoribonuclease R; Provisional
Probab=64.00 E-value=7.7 Score=40.75 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=37.8
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCC-CcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPT-KTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~-~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|++.|...+.|.+..+|++.++++.. ....|.+.|+.|...|.+.+..
T Consensus 24 Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~ 72 (813)
T PRK11642 24 ILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR 72 (813)
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC
Confidence 55666543479999999999999531 2355999999999999998765
No 474
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=63.92 E-value=22 Score=26.59 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=43.9
Q ss_pred cchhhhhCCCCCCHHHHHHHcC------CCCCCcccHHHHHHHHHhCCceecccc-CC-CCcccceecchhhhhhh
Q 018116 43 IADIIHSHGRPITLSELVSALK------IQPTKTSNLFRFMRLLVHMGLFSKTKV-GG-EKEEEAYGLTAISALLI 110 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~------~~p~~~~~l~~lL~~L~~~g~l~~~~~-~~-~~~~~~y~~t~~~~~l~ 110 (360)
|+..|.. +|.+--||++.+. ++. ++..+...|+.|...|+++.... ++ ++..-.|++|+.|+.+.
T Consensus 9 iL~~L~~--~~~~GYei~~~l~~~~~~~~~i-~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l 81 (100)
T TIGR03433 9 ILKTLSL--GPLHGYGIAQRIQQISEDVLQV-EEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQL 81 (100)
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHcCCcccc-CCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHH
Confidence 4445554 6888888887651 112 56889999999999999998421 11 11123599999998554
No 475
>PRK10736 hypothetical protein; Provisional
Probab=63.84 E-value=7.7 Score=36.63 Aligned_cols=52 Identities=6% Similarity=-0.027 Sum_probs=42.6
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
..|++.|.. .|.++++|+.++|+ +...+...|-.|.-.|++.+.. +++|+.-
T Consensus 311 ~~v~~~l~~--~~~~iD~L~~~~~l---~~~~v~~~L~~LEl~G~v~~~~------g~~~~~~ 362 (374)
T PRK10736 311 PELLANVGD--EVTPVDVVAERAGQ---PVPEVVTQLLELELAGWIAAVP------GGYVRLR 362 (374)
T ss_pred HHHHHhcCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEEcC------CcEEEEe
Confidence 467777764 68999999999999 4688899999999999999986 4556553
No 476
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=63.80 E-value=7.7 Score=28.18 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.-+|+..|++++++ .-...++.|+.|...|++....
T Consensus 40 K~ITps~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 40 KIVTPYTLASKYGI---KISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred cEEcHHHHHHHhcc---hHHHHHHHHHHHHHCCCEEEEe
Confidence 57899999999999 6799999999999999997764
No 477
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=63.28 E-value=6.3 Score=26.69 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=33.7
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
|++.|-.. |+.|..+|.+.+++ +.+.++.-|-.|...|++...
T Consensus 18 V~~~Ll~~-G~ltl~~i~~~t~l---~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 18 VGEVLLSR-GRLTLREIVRRTGL---SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHC--SEEHHHHHHHHT-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHcCCeeee
Confidence 45556553 79999999999999 468999999999999998765
No 478
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=63.23 E-value=9.1 Score=32.08 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 53 PITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 53 ~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
-.|-.+|++.+ |+ +++.++|.++.|+..|++....
T Consensus 70 fpSN~~La~r~~G~---s~~tlrR~l~~LveaGLI~rrD 105 (177)
T PF03428_consen 70 FPSNAQLAERLNGM---SERTLRRHLARLVEAGLIVRRD 105 (177)
T ss_pred ecCHHHHHHHHcCC---CHHHHHHHHHHHHHCCCeeecc
Confidence 46889999999 99 5799999999999999999864
No 479
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=62.98 E-value=6.8 Score=28.81 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=39.4
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCC---CCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcC
Q 018116 43 IADIIHSHGRPITLSELVSALKIQP---TKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKD 112 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p---~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~ 112 (360)
|.+.+... -++|-++....+.-.+ .-..++.=-+.+|...|+++..+ .+.|++|+.|+.+...
T Consensus 25 i~~~v~~~-~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~~~------rG~~~iT~~G~~~l~~ 90 (92)
T PF14338_consen 25 IYERVAER-FGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIERPK------RGIWRITEKGRKALAE 90 (92)
T ss_pred HHHHHHHH-hCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccCCC------CCceEECHhHHHHHhh
Confidence 44445442 4566666555542110 01233444578999999999976 6899999999855543
No 480
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=62.79 E-value=9 Score=32.64 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=32.0
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.|-++||+.+|++ ...+.|+|+.|...|++...+
T Consensus 168 ~~t~~~lA~~lG~t---r~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIVGCS---REMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHhCCC---HHHHHHHHHHHHHCCCEEecC
Confidence 78999999999994 588999999999999999874
No 481
>PRK09462 fur ferric uptake regulator; Provisional
Probab=62.22 E-value=9.6 Score=30.81 Aligned_cols=54 Identities=11% Similarity=0.271 Sum_probs=40.8
Q ss_pred HHHHhCcchhhhhC-CCCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCceeccc
Q 018116 37 GAVELGIADIIHSH-GRPITLSELVSALKI--QPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 37 ~a~~l~lf~~L~~~-~~~~t~~ela~~~~~--~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-.+.-|++.|... +++.|++||-+.+.- +..+..-+.|.|+.|+..|++.+..
T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34567788888753 369999999987732 1114577999999999999998864
No 482
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=61.60 E-value=32 Score=31.65 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC---CCCCccEEEeccccccCCh
Q 018116 196 LGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ---YIPPADAYFFKLVFHAFGD 268 (360)
Q Consensus 196 ~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~---~~p~~D~i~~~~~lh~~~~ 268 (360)
..+|+-+|+|. |..+..++-- -+..++.+|+ ..-+++... ..|+...-.+... ....+|+++-.=.+-.-..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 46788899995 5556666654 3678999999 666666654 6777776554433 3567999875332221122
Q ss_pred hHHHHHHHHHHHhccCCCCCcEE
Q 018116 269 EDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
+ .-+.++..+.|+| |+.|
T Consensus 247 P--kLvt~e~vk~Mkp---GsVi 264 (371)
T COG0686 247 P--KLVTREMVKQMKP---GSVI 264 (371)
T ss_pred c--eehhHHHHHhcCC---CcEE
Confidence 2 3457888899999 6644
No 483
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=61.09 E-value=4.8 Score=25.58 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=22.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGL 85 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~ 85 (360)
++.+...+. .+.|..+||+.+|+ +..-+.+|++...+.|+
T Consensus 7 R~~ii~l~~---~G~s~~~ia~~lgv---s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLR---EGWSIREIAKRLGV---SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHH---HT--HHHHHHHHTS----HHHHHHHHT-------
T ss_pred HHHHHHHHH---CCCCHHHHHHHHCc---CHHHHHHHHHHcccccc
Confidence 344455554 38999999999999 56889999987766663
No 484
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=60.79 E-value=16 Score=33.92 Aligned_cols=94 Identities=14% Similarity=0.222 Sum_probs=60.6
Q ss_pred cCCCCEEEEeC--CCCchHHHHHHHHCCCCeEEEeechHHHhcCCC---CCCeEEEeCCCCCC----CC--CccEEEecc
Q 018116 193 FEGLGSIVDVG--GGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---TENLKYIAGDMFQY----IP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG--~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---~~ri~~~~~D~~~~----~p--~~D~i~~~~ 261 (360)
+.+..+||-.| +|.|.+++.|++++-...++....++-.+.+++ ..-+++...|+.+. .. ++|+|+-.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 56688999988 456689999999986544444444433334433 22345556665442 12 499988532
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
. ...+.+..+.|++ +|+++.+-...
T Consensus 220 -----G----~~~~~~~l~~l~~---~G~lv~ig~~~ 244 (326)
T COG0604 220 -----G----GDTFAASLAALAP---GGRLVSIGALS 244 (326)
T ss_pred -----C----HHHHHHHHHHhcc---CCEEEEEecCC
Confidence 2 2457778888999 89999887765
No 485
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=60.65 E-value=10 Score=33.30 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=39.2
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.|++.|...++-++..+||+++|+ +..-+.+-++.|.+.|+++...
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGV---SRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecc
Confidence 577888752379999999999999 4578999999999999998874
No 486
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=60.34 E-value=5.3 Score=28.07 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK 88 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~ 88 (360)
...|..|||+.+|+ ++..+..++..+...|.+.+
T Consensus 31 eGlS~kEIAe~LGI---S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGR---TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHhcCcccchHHH
Confidence 58999999999999 56889999998888877654
No 487
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=60.13 E-value=11 Score=31.63 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=41.1
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++..|.+.|...+...|+.+||.++|+ +..-+.|-|--|...|.|....
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i---~k~~vNr~LY~L~~~~~v~~~~ 53 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGI---SKHEANRCLYRLLESDAVSCED 53 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCc---cHHHHHHHHHHHhhcCcEecCC
Confidence 456788999886447999999999999 5677999999999999997664
No 488
>PF14557 AphA_like: Putative AphA-like transcriptional regulator
Probab=60.12 E-value=15 Score=30.17 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=50.8
Q ss_pred HHHHHhCcchhhhhCCCCCCHHHHHHHcCC------CCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 36 KGAVELGIADIIHSHGRPITLSELVSALKI------QPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 36 ~~a~~l~lf~~L~~~~~~~t~~ela~~~~~------~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+-+++++++-.|+. +|.+++++|+...- -| +...+.--++.|...|+|+.....+...+..|.+|+.|+
T Consensus 9 re~v~L~vLG~la~--~p~~~~~va~~vrh~~sr~~gp-s~~Ll~~sie~Lr~eGlve~~~g~g~e~~a~l~iT~~Gr 83 (175)
T PF14557_consen 9 REAVRLCVLGTLAR--GPRRYEEVAGAVRHFASRIWGP-SLDLLGTSIELLREEGLVEAVDGEGMEDNALLAITDAGR 83 (175)
T ss_pred HHHHHHHHHHHHhc--CCcCHHHHHHHHHHhccccccC-chhhhhhHHHHHHhcCCcccccccCCCccceeeeCcchH
Confidence 44667777778876 89999999987632 33 568899999999999999988321111245688998875
No 489
>PHA01634 hypothetical protein
Probab=60.11 E-value=12 Score=29.42 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=30.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMP 235 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~ 235 (360)
..++|+|||++.|..++.++-+ +. +++.++. +...+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHH
Confidence 5689999999999999999876 44 5777777 65555443
No 490
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=59.35 E-value=11 Score=32.77 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++|-++||+.+|+ ....+.|.|..|...|++...+
T Consensus 184 ~lt~~~iA~~lG~---sr~tvsR~l~~l~~~g~I~~~~ 218 (235)
T PRK11161 184 TMTRGDIGNYLGL---TVETISRLLGRFQKSGMLAVKG 218 (235)
T ss_pred cccHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 6899999999999 4588999999999999999985
No 491
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=59.31 E-value=21 Score=27.52 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=54.0
Q ss_pred CCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC---CCC---C-CC--CccEEEeccccccCChhHHHHH
Q 018116 205 GNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGD---MFQ---Y-IP--PADAYFFKLVFHAFGDEDCLKI 274 (360)
Q Consensus 205 G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D---~~~---~-~p--~~D~i~~~~~lh~~~~~~~~~~ 274 (360)
|.|.++..+++... .+++++|. +.-.+.+++..--.+...+ +.+ . .+ ++|+|+-+- .. ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g~---~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----GS---GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----SS---HHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEec-----Cc---HHH
Confidence 45888899999887 99999998 6666666542211122221 111 1 22 488887542 21 256
Q ss_pred HHHHHHhccCCCCCcEEEEEeeec
Q 018116 275 LKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 275 L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
++...++|+| +|+++++-...
T Consensus 72 ~~~~~~~l~~---~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRP---GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEE---EEEEEEESSTS
T ss_pred HHHHHHHhcc---CCEEEEEEccC
Confidence 8889999999 99999988766
No 492
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=58.98 E-value=73 Score=23.74 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechH-HHhcCCCCCCeEEEeCCCCCCCCCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPH-AVANMPQTENLKYIAGDMFQYIPPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~ 260 (360)
.+++||=||+|.-.....-.-.--+.+++++.... ..+ +++++....+..+..++|+|++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~-----~~i~~~~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE-----GLIQLIRREFEEDLDGADLVFAA 67 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH-----TSCEEEESS-GGGCTTESEEEE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh-----hHHHHHhhhHHHHHhhheEEEec
Confidence 56789999997665543322222357888887632 222 56777777665456689988864
No 493
>PF13814 Replic_Relax: Replication-relaxation
Probab=58.82 E-value=17 Score=30.46 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=46.1
Q ss_pred hhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccC--C-CC-cccceecchhhhhhhc
Q 018116 46 IIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVG--G-EK-EEEAYGLTAISALLIK 111 (360)
Q Consensus 46 ~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~--~-~~-~~~~y~~t~~~~~l~~ 111 (360)
.|... ..+|.++|+..+..+...++.+.+.|+.|...|++...... . .| ....|.+|+.|..+..
T Consensus 3 ~L~~~-r~lt~~Qi~~l~~~~~~~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l~ 71 (191)
T PF13814_consen 3 LLARH-RFLTTDQIARLLFPSSKSERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLLA 71 (191)
T ss_pred hHHHh-cCcCHHHHHHHHcCCCcchHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHHH
Confidence 34443 68999999999998542234799999999999999887530 0 00 1346899998875553
No 494
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.81 E-value=34 Score=32.92 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=68.5
Q ss_pred CCCEEEEeC-CCCchH------HHHHHHHCCCCeEEEeec--hHHHhcCCC---CCCeEEEeCCCCC-CC----------
Q 018116 195 GLGSIVDVG-GGNGGF------SKIISEAFPGIKCTVLDL--PHAVANMPQ---TENLKYIAGDMFQ-YI---------- 251 (360)
Q Consensus 195 ~~~~iLDvG-~G~G~~------~~~l~~~~p~~~~~~~D~--~~~~~~a~~---~~ri~~~~~D~~~-~~---------- 251 (360)
++..|+=|| -|+|-+ +..+.++....-++..|. |.++++.+. .-+|.|...+-.. |.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 456777777 355543 233333223334677887 888887764 5566666553322 32
Q ss_pred --CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 018116 252 --PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKE 302 (360)
Q Consensus 252 --p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~ 302 (360)
..||+++.--.=-|.-|++...-++++++.++| .-.|+|+|.......
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVvDam~GQdA 228 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVVDAMIGQDA 228 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEEecccchHH
Confidence 148999874443333467788899999999999 899999998876543
No 495
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=58.80 E-value=10 Score=34.57 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHH-HHHhCCceeccc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMR-LLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~-~L~~~g~l~~~~ 90 (360)
+++.+++++|+.+|. ++..+.+.++ .|+..|++...+
T Consensus 253 ~~~~~~~~ia~~lg~---~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 253 GGPVGLKTLAAALGE---DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CCcccHHHHHHHhCC---CcchHHHhhhHHHHHcCCcccCC
Confidence 368999999999999 5688999999 799999998664
No 496
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=58.58 E-value=97 Score=29.84 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=53.1
Q ss_pred CEEEEeCCCCchHHHH--HHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe-------------CCC--CCCCCCccEEE
Q 018116 197 GSIVDVGGGNGGFSKI--ISEAFPGIKCTVLDL-PHAVANMPQTENLKYIA-------------GDM--FQYIPPADAYF 258 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~-------------~D~--~~~~p~~D~i~ 258 (360)
.+|.=||.|.-+...+ |+++ +.+++++|. ++.++..+. .++.+.. +.+ .++....|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINR-GEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHC-CCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEE
Confidence 4688888886544433 4443 678999999 776665331 1111110 101 01123588887
Q ss_pred eccccc-----cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 259 FKLVFH-----AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 259 ~~~~lh-----~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
++---- ..+-......++.+.+.+++ |.++|.....+.
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~----g~iVI~~STv~p 123 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK----GDLVILESTSPV 123 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCC----CCEEEEeCCCCC
Confidence 642210 00113556677888888887 677776665543
No 497
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=58.54 E-value=11 Score=31.63 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
-|.|-+|||+.+|+ ....+.|.|+.|...|++....
T Consensus 142 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 142 LRLSHQAIAEAIGS---TRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 37899999999999 4689999999999999999875
No 498
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=58.47 E-value=12 Score=28.42 Aligned_cols=36 Identities=33% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.-+|+..||+++++ .-...++.|+.|.+.|++....
T Consensus 58 K~ITp~~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 93 (105)
T PF03297_consen 58 KLITPSVLSERLKI---NGSLARKALRELESKGLIKPVS 93 (105)
T ss_dssp SCECHHHHHHHHCC---SCHHHHHHHHHHHHCCSSEEEE
T ss_pred cEeeHHHHHHhHhh---HHHHHHHHHHHHHHCCCEEEEe
Confidence 57899999999999 6799999999999999998875
No 499
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.38 E-value=99 Score=26.33 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC-CccEEEeccccccCChh
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIP-PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p-~~D~i~~~~~lh~~~~~ 269 (360)
...++++|-+|.= +|.+...++.. .++++++|+ |.+-... .++|.|..+ ..+.+ .+|+|+-.--|....++
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~l--p~~v~Fr~~--~~~~~G~~DlivDlTGlGG~~Pe 115 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFL--PNNVKFRNL--LKFIRGEVDLIVDLTGLGGIEPE 115 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcC--CCCccHhhh--cCCCCCceeEEEeccccCCCCHH
Confidence 4567889988864 67766666655 789999999 6555544 445777655 33444 59999988878776664
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 270 DCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.|++ ++| +.+++-++..
T Consensus 116 ----~L~~----fnp----~vfiVEdP~g 132 (254)
T COG4017 116 ----FLAK----FNP----KVFIVEDPKG 132 (254)
T ss_pred ----HHhc----cCC----ceEEEECCCC
Confidence 3433 577 6777766554
No 500
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=58.34 E-value=18 Score=28.20 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=51.1
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHH
Q 018116 58 ELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFIS 137 (360)
Q Consensus 58 ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (360)
+||+.+++ +-+-|--+++++.-+|+++..+ |-..+|+.|+.++..+......++.-... ...+....+.
T Consensus 2 ~La~~l~~---eiDdL~p~~eAaelLgf~~~~~-------Gdi~LT~~G~~f~~a~~~~rK~if~~~l~-~~~Pl~~~I~ 70 (120)
T PF09821_consen 2 QLADELHL---EIDDLLPIVEAAELLGFAEVEE-------GDIRLTPLGRRFAEADIDERKEIFREQLL-RHVPLAAHIR 70 (120)
T ss_pred chHHHhCC---cHHHHHHHHHHHHHcCCeeecC-------CcEEeccchHHHHHCChHHHHHHHHHHHH-hcCCHHHHHH
Confidence 47888888 5678889999999999999984 89999999997775543233344332211 1233445566
Q ss_pred HhhhcC
Q 018116 138 KWFKGN 143 (360)
Q Consensus 138 ~~l~~g 143 (360)
..++..
T Consensus 71 ~~L~~~ 76 (120)
T PF09821_consen 71 RVLRER 76 (120)
T ss_pred HHHHhC
Confidence 666543
Done!