Query 018116
Match_columns 360
No_of_seqs 185 out of 2176
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 10:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 2.3E-54 7.9E-59 404.2 31.2 328 17-360 7-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 2.6E-52 8.9E-57 391.9 33.9 345 11-360 13-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 1.6E-51 5.5E-56 387.3 32.2 345 11-360 14-366 (368)
4 1fp2_A Isoflavone O-methyltran 100.0 3.1E-51 1.1E-55 383.5 32.8 347 2-360 3-352 (352)
5 1zg3_A Isoflavanone 4'-O-methy 100.0 1.4E-50 4.9E-55 379.9 32.6 348 12-360 4-358 (358)
6 3lst_A CALO1 methyltransferase 100.0 2.6E-50 8.9E-55 376.6 33.1 324 15-360 19-347 (348)
7 3gwz_A MMCR; methyltransferase 100.0 1E-49 3.4E-54 375.4 28.6 322 17-360 37-368 (369)
8 3i53_A O-methyltransferase; CO 100.0 1.4E-49 4.8E-54 369.5 21.7 317 19-360 6-331 (332)
9 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.8E-48 6.1E-53 367.4 29.2 342 12-360 16-372 (372)
10 2ip2_A Probable phenazine-spec 100.0 5.1E-48 1.7E-52 359.3 30.3 319 17-360 7-333 (334)
11 3dp7_A SAM-dependent methyltra 100.0 1.4E-45 4.9E-50 346.3 28.2 327 12-360 9-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 4.3E-45 1.5E-49 344.7 25.2 324 16-360 14-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 1.5E-44 5.2E-49 339.3 27.1 322 18-360 19-355 (360)
14 2r3s_A Uncharacterized protein 100.0 2.9E-43 9.8E-48 327.3 28.1 316 19-359 7-333 (335)
15 3mcz_A O-methyltransferase; ad 100.0 4.9E-43 1.7E-47 328.0 29.4 319 10-360 16-348 (352)
16 1x19_A CRTF-related protein; m 100.0 5.3E-43 1.8E-47 328.6 28.4 315 10-360 22-358 (359)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 3.9E-21 1.3E-25 171.5 17.1 164 193-360 68-256 (261)
18 3dtn_A Putative methyltransfer 99.8 2.3E-19 7.9E-24 157.4 16.6 163 194-360 43-225 (234)
19 3hnr_A Probable methyltransfer 99.8 3.4E-18 1.2E-22 148.4 14.6 169 184-360 36-211 (220)
20 3dh0_A SAM dependent methyltra 99.8 1.2E-17 4E-22 144.9 16.7 155 183-360 27-192 (219)
21 3dlc_A Putative S-adenosyl-L-m 99.8 2.7E-18 9.2E-23 148.6 10.2 167 183-359 34-213 (219)
22 1ve3_A Hypothetical protein PH 99.8 2.4E-18 8.3E-23 150.0 9.9 160 194-360 37-226 (227)
23 3ou2_A SAM-dependent methyltra 99.7 4.5E-17 1.5E-21 140.9 16.9 158 184-349 36-205 (218)
24 3ujc_A Phosphoethanolamine N-m 99.7 1.5E-17 5.2E-22 148.3 14.3 153 184-349 46-206 (266)
25 3bus_A REBM, methyltransferase 99.7 3E-17 1E-21 147.3 16.0 155 183-349 51-216 (273)
26 3pfg_A N-methyltransferase; N, 99.7 2.4E-17 8.2E-22 147.2 13.5 163 193-360 48-248 (263)
27 1vl5_A Unknown conserved prote 99.7 3.9E-17 1.3E-21 145.6 14.7 153 182-349 26-190 (260)
28 2o57_A Putative sarcosine dime 99.7 6.5E-17 2.2E-21 147.0 15.3 154 183-349 68-234 (297)
29 1kpg_A CFA synthase;, cyclopro 99.7 7.4E-17 2.5E-21 145.9 15.3 160 184-349 55-228 (287)
30 1xtp_A LMAJ004091AAA; SGPP, st 99.7 1.9E-17 6.6E-22 146.8 10.5 148 184-350 84-239 (254)
31 3dli_A Methyltransferase; PSI- 99.7 1.8E-16 6.2E-21 139.5 16.5 141 193-350 39-185 (240)
32 1nkv_A Hypothetical protein YJ 99.7 9E-17 3.1E-21 142.7 14.5 152 183-349 26-187 (256)
33 3h2b_A SAM-dependent methyltra 99.7 5E-17 1.7E-21 139.2 11.9 138 196-351 42-184 (203)
34 3l8d_A Methyltransferase; stru 99.7 2.3E-16 7.9E-21 138.8 16.0 143 193-349 51-200 (242)
35 3mgg_A Methyltransferase; NYSG 99.7 6.8E-17 2.3E-21 145.2 12.5 152 193-349 35-198 (276)
36 3ocj_A Putative exported prote 99.7 4.2E-17 1.4E-21 149.0 11.2 165 193-360 116-303 (305)
37 3bxo_A N,N-dimethyltransferase 99.7 7.3E-17 2.5E-21 141.7 12.3 162 194-360 39-238 (239)
38 3vc1_A Geranyl diphosphate 2-C 99.7 2.8E-16 9.7E-21 143.9 16.6 144 193-349 115-269 (312)
39 3hem_A Cyclopropane-fatty-acyl 99.7 1.5E-16 5.1E-21 145.0 14.6 162 183-350 62-244 (302)
40 1xxl_A YCGJ protein; structura 99.7 3E-16 1E-20 138.1 14.7 153 184-349 12-174 (239)
41 2fk8_A Methoxy mycolic acid sy 99.7 2.2E-16 7.5E-21 145.0 14.3 160 184-349 81-254 (318)
42 3f4k_A Putative methyltransfer 99.7 2.8E-16 9.5E-21 139.6 14.4 143 193-350 44-197 (257)
43 2qe6_A Uncharacterized protein 99.7 5.2E-16 1.8E-20 139.3 16.1 140 195-345 77-238 (274)
44 3lcc_A Putative methyl chlorid 99.7 1.4E-16 4.9E-21 139.7 12.2 133 196-351 67-209 (235)
45 4fsd_A Arsenic methyltransfera 99.7 3.7E-16 1.3E-20 147.2 15.0 145 193-348 81-250 (383)
46 3g2m_A PCZA361.24; SAM-depende 99.7 1.9E-16 6.4E-21 144.2 12.1 169 183-359 73-290 (299)
47 3kkz_A Uncharacterized protein 99.7 3.2E-16 1.1E-20 140.2 13.3 143 193-350 44-197 (267)
48 3i9f_A Putative type 11 methyl 99.7 1.6E-16 5.6E-21 132.1 10.6 145 186-359 10-158 (170)
49 2qm3_A Predicted methyltransfe 99.7 2E-15 6.9E-20 141.6 19.3 215 42-298 47-280 (373)
50 1pjz_A Thiopurine S-methyltran 99.7 2E-16 6.9E-21 135.7 11.1 134 193-349 20-176 (203)
51 2ex4_A Adrenal gland protein A 99.7 1.6E-16 5.6E-21 139.9 10.8 138 195-350 79-226 (241)
52 3jwg_A HEN1, methyltransferase 99.7 6.4E-16 2.2E-20 134.0 13.6 144 193-346 27-189 (219)
53 3e23_A Uncharacterized protein 99.7 3.2E-16 1.1E-20 135.1 11.5 138 193-349 41-182 (211)
54 3sm3_A SAM-dependent methyltra 99.7 9.2E-16 3.1E-20 134.1 14.1 149 193-349 28-207 (235)
55 2p7i_A Hypothetical protein; p 99.7 9.5E-16 3.2E-20 135.1 13.9 144 194-349 41-199 (250)
56 3ccf_A Cyclopropane-fatty-acyl 99.7 1.1E-15 3.6E-20 137.8 14.3 154 182-349 46-210 (279)
57 3jwh_A HEN1; methyltransferase 99.7 4.5E-16 1.6E-20 134.8 11.4 143 193-345 27-188 (217)
58 3g5l_A Putative S-adenosylmeth 99.7 5.1E-16 1.7E-20 137.7 11.5 150 193-349 42-216 (253)
59 3gu3_A Methyltransferase; alph 99.6 9.8E-16 3.4E-20 138.4 13.3 151 193-348 20-189 (284)
60 3ege_A Putative methyltransfer 99.6 2.3E-15 7.9E-20 134.2 15.6 151 183-349 24-178 (261)
61 3bkw_A MLL3908 protein, S-aden 99.6 3.4E-15 1.2E-19 131.3 15.9 157 185-349 35-214 (243)
62 2p35_A Trans-aconitate 2-methy 99.6 1E-15 3.4E-20 136.1 12.0 153 185-344 25-185 (259)
63 2xvm_A Tellurite resistance pr 99.6 3.1E-15 1.1E-19 127.3 14.1 142 184-349 23-173 (199)
64 1y8c_A S-adenosylmethionine-de 99.6 2.7E-15 9.2E-20 132.0 13.8 95 195-294 37-141 (246)
65 3g07_A 7SK snRNA methylphospha 99.6 2.1E-16 7.3E-21 143.3 6.1 146 194-349 45-269 (292)
66 3bkx_A SAM-dependent methyltra 99.6 4.4E-15 1.5E-19 133.2 14.5 159 183-349 33-219 (275)
67 4htf_A S-adenosylmethionine-de 99.6 1.5E-15 5.1E-20 137.2 11.1 147 195-351 68-234 (285)
68 3ggd_A SAM-dependent methyltra 99.6 2.4E-15 8.3E-20 132.6 11.6 150 193-349 54-219 (245)
69 3cgg_A SAM-dependent methyltra 99.6 2.9E-14 1E-18 120.6 17.8 125 194-349 45-175 (195)
70 3d2l_A SAM-dependent methyltra 99.6 6.8E-15 2.3E-19 129.3 13.9 96 193-294 31-136 (243)
71 3e8s_A Putative SAM dependent 99.6 1.2E-15 4.2E-20 132.5 9.0 153 184-349 43-209 (227)
72 1vlm_A SAM-dependent methyltra 99.6 3E-14 1E-18 123.5 16.6 136 195-349 47-188 (219)
73 2gb4_A Thiopurine S-methyltran 99.6 8.3E-15 2.9E-19 129.7 12.9 133 194-349 67-227 (252)
74 3cc8_A Putative methyltransfer 99.6 1.9E-14 6.6E-19 125.1 13.6 143 194-349 31-185 (230)
75 2i62_A Nicotinamide N-methyltr 99.6 6.5E-15 2.2E-19 131.2 10.6 140 194-350 55-240 (265)
76 2yqz_A Hypothetical protein TT 99.6 1.9E-14 6.4E-19 128.0 13.5 145 193-347 37-194 (263)
77 4hg2_A Methyltransferase type 99.6 2E-14 6.7E-19 127.6 13.2 99 194-300 38-140 (257)
78 3g5t_A Trans-aconitate 3-methy 99.6 1.9E-14 6.4E-19 130.9 13.2 141 194-342 35-197 (299)
79 2zfu_A Nucleomethylin, cerebra 99.6 4E-14 1.4E-18 122.2 14.5 130 184-360 57-190 (215)
80 3m70_A Tellurite resistance pr 99.6 4.3E-14 1.5E-18 127.6 13.9 141 183-347 110-258 (286)
81 2p8j_A S-adenosylmethionine-de 99.5 1.2E-14 4.1E-19 124.8 9.4 150 193-346 21-180 (209)
82 2aot_A HMT, histamine N-methyl 99.5 4.9E-14 1.7E-18 127.7 13.4 141 194-346 51-218 (292)
83 2a14_A Indolethylamine N-methy 99.5 1.2E-14 4.2E-19 129.7 8.7 140 193-350 53-239 (263)
84 3thr_A Glycine N-methyltransfe 99.5 7.8E-15 2.7E-19 132.9 7.1 108 183-297 47-177 (293)
85 3giw_A Protein of unknown func 99.5 8.8E-14 3E-18 123.0 13.3 142 194-345 77-243 (277)
86 1ri5_A MRNA capping enzyme; me 99.5 7E-14 2.4E-18 126.6 12.8 153 193-349 62-250 (298)
87 4e2x_A TCAB9; kijanose, tetron 99.5 4.1E-14 1.4E-18 134.7 11.6 149 183-350 97-254 (416)
88 3q87_B N6 adenine specific DNA 99.5 4.4E-13 1.5E-17 111.4 15.8 119 194-350 22-150 (170)
89 3grz_A L11 mtase, ribosomal pr 99.5 1.3E-13 4.6E-18 118.0 12.3 131 193-360 58-196 (205)
90 1wzn_A SAM-dependent methyltra 99.5 6.4E-13 2.2E-17 117.4 16.9 97 193-294 39-144 (252)
91 3e05_A Precorrin-6Y C5,15-meth 99.5 4.2E-13 1.4E-17 114.8 15.0 124 184-346 31-164 (204)
92 2g72_A Phenylethanolamine N-me 99.5 4.2E-14 1.4E-18 127.9 8.7 139 195-350 71-257 (289)
93 2kw5_A SLR1183 protein; struct 99.5 2.4E-13 8.3E-18 116.0 12.9 133 195-349 30-171 (202)
94 3mq2_A 16S rRNA methyltransfer 99.5 1.8E-13 6E-18 118.5 10.7 147 186-349 20-184 (218)
95 1fbn_A MJ fibrillarin homologu 99.5 2.5E-13 8.4E-18 118.7 11.4 140 193-359 72-226 (230)
96 2b3t_A Protein methyltransfera 99.5 9.1E-13 3.1E-17 118.3 14.5 135 194-360 108-275 (276)
97 3ofk_A Nodulation protein S; N 99.4 2.1E-13 7.1E-18 117.7 9.3 100 193-297 49-156 (216)
98 2gs9_A Hypothetical protein TT 99.4 3.6E-13 1.2E-17 115.8 10.4 129 195-340 36-171 (211)
99 3p2e_A 16S rRNA methylase; met 99.4 2.9E-13 1E-17 117.8 9.5 146 194-350 23-186 (225)
100 1af7_A Chemotaxis receptor met 99.4 4.9E-13 1.7E-17 119.4 10.4 96 195-293 105-250 (274)
101 3htx_A HEN1; HEN1, small RNA m 99.4 2.1E-12 7.3E-17 128.4 14.8 101 193-297 719-836 (950)
102 1dus_A MJ0882; hypothetical pr 99.4 2.4E-12 8.1E-17 108.6 13.2 140 184-360 43-193 (194)
103 3uwp_A Histone-lysine N-methyl 99.4 5.3E-13 1.8E-17 123.8 9.5 112 183-302 163-295 (438)
104 4dzr_A Protein-(glutamine-N5) 99.4 2.6E-13 8.9E-18 116.6 6.1 135 194-359 29-203 (215)
105 1nt2_A Fibrillarin-like PRE-rR 99.4 4.4E-12 1.5E-16 109.1 13.7 137 193-360 55-209 (210)
106 4df3_A Fibrillarin-like rRNA/T 99.4 2.2E-12 7.6E-17 111.9 11.0 141 193-359 75-230 (233)
107 3iv6_A Putative Zn-dependent a 99.4 1.6E-12 5.5E-17 115.1 10.0 106 183-296 35-149 (261)
108 3hm2_A Precorrin-6Y C5,15-meth 99.4 1.4E-12 4.9E-17 108.7 8.9 100 185-296 17-128 (178)
109 2pxx_A Uncharacterized protein 99.4 1.8E-12 6.2E-17 111.4 9.3 102 193-298 40-162 (215)
110 3orh_A Guanidinoacetate N-meth 99.4 1.2E-13 4E-18 121.3 1.8 96 194-295 59-170 (236)
111 2h00_A Methyltransferase 10 do 99.4 2.9E-13 1E-17 119.9 4.2 144 195-349 65-238 (254)
112 3evz_A Methyltransferase; NYSG 99.4 6.2E-12 2.1E-16 109.5 12.5 128 193-351 53-208 (230)
113 3kr9_A SAM-dependent methyltra 99.3 6.5E-12 2.2E-16 108.4 12.2 130 193-359 13-156 (225)
114 2ipx_A RRNA 2'-O-methyltransfe 99.3 4.6E-12 1.6E-16 110.7 11.2 139 193-358 75-229 (233)
115 3mti_A RRNA methylase; SAM-dep 99.3 3.5E-12 1.2E-16 107.3 10.0 132 193-349 20-169 (185)
116 1zx0_A Guanidinoacetate N-meth 99.3 6.6E-13 2.3E-17 116.4 5.6 100 194-297 59-172 (236)
117 3bgv_A MRNA CAP guanine-N7 met 99.3 7.8E-12 2.7E-16 114.3 12.7 100 194-297 33-157 (313)
118 3njr_A Precorrin-6Y methylase; 99.3 1.2E-11 4E-16 105.9 13.0 121 185-347 47-178 (204)
119 1xdz_A Methyltransferase GIDB; 99.3 2.9E-12 9.8E-17 112.6 9.1 121 194-349 69-202 (240)
120 1yzh_A TRNA (guanine-N(7)-)-me 99.3 1.5E-11 5.3E-16 105.9 13.6 99 194-295 40-156 (214)
121 3lec_A NADB-rossmann superfami 99.3 1.3E-11 4.5E-16 106.6 12.7 130 193-359 19-162 (230)
122 3m33_A Uncharacterized protein 99.3 1.8E-12 6.3E-17 112.8 7.3 114 194-349 47-167 (226)
123 1g8a_A Fibrillarin-like PRE-rR 99.3 2.6E-11 8.8E-16 105.4 14.4 141 193-360 71-226 (227)
124 3eey_A Putative rRNA methylase 99.3 5.6E-12 1.9E-16 107.1 9.9 104 193-299 20-143 (197)
125 1l3i_A Precorrin-6Y methyltran 99.3 1.2E-11 4.2E-16 104.0 11.6 119 185-343 25-154 (192)
126 3fpf_A Mtnas, putative unchara 99.3 5.6E-12 1.9E-16 112.8 9.7 95 193-295 120-222 (298)
127 3id6_C Fibrillarin-like rRNA/T 99.3 2.4E-11 8.2E-16 105.6 13.4 141 193-359 74-229 (232)
128 2nxc_A L11 mtase, ribosomal pr 99.3 1.2E-11 4.1E-16 109.6 11.6 124 193-354 118-249 (254)
129 3lpm_A Putative methyltransfer 99.3 2.1E-11 7.3E-16 108.3 12.9 124 193-349 46-201 (259)
130 1yb2_A Hypothetical protein TA 99.3 3.1E-12 1.1E-16 114.7 7.1 124 185-348 102-236 (275)
131 2vdw_A Vaccinia virus capping 99.3 6.1E-12 2.1E-16 114.3 9.1 151 195-349 48-246 (302)
132 3mb5_A SAM-dependent methyltra 99.3 1.6E-11 5.5E-16 108.7 11.6 126 184-349 84-222 (255)
133 3fzg_A 16S rRNA methylase; met 99.3 5.5E-12 1.9E-16 104.8 7.8 135 194-354 48-192 (200)
134 1jsx_A Glucose-inhibited divis 99.3 9.3E-12 3.2E-16 106.5 9.5 91 195-294 65-164 (207)
135 3gnl_A Uncharacterized protein 99.3 2.3E-11 7.8E-16 106.0 11.8 130 193-359 19-162 (244)
136 3g89_A Ribosomal RNA small sub 99.3 5.4E-12 1.8E-16 111.5 7.8 121 194-349 79-212 (249)
137 4dcm_A Ribosomal RNA large sub 99.3 9.9E-12 3.4E-16 116.2 9.8 107 184-295 213-334 (375)
138 3bwc_A Spermidine synthase; SA 99.3 1.8E-11 6E-16 111.4 10.9 129 194-349 94-240 (304)
139 2pjd_A Ribosomal RNA small sub 99.3 5.2E-12 1.8E-16 117.0 7.1 109 183-296 186-304 (343)
140 2yxd_A Probable cobalt-precorr 99.2 5.5E-11 1.9E-15 99.2 11.8 120 184-346 26-154 (183)
141 2avn_A Ubiquinone/menaquinone 99.2 1.4E-11 4.8E-16 109.5 8.2 148 195-351 54-215 (260)
142 2frn_A Hypothetical protein PH 99.2 8.8E-11 3E-15 105.4 13.1 121 193-345 123-253 (278)
143 2ozv_A Hypothetical protein AT 99.2 6E-11 2.1E-15 105.4 11.8 99 193-294 34-169 (260)
144 2ld4_A Anamorsin; methyltransf 99.2 1.7E-11 5.9E-16 102.2 7.7 114 193-348 10-133 (176)
145 3dxy_A TRNA (guanine-N(7)-)-me 99.2 1.3E-11 4.6E-16 106.7 7.3 98 195-295 34-150 (218)
146 1u2z_A Histone-lysine N-methyl 99.2 3.3E-11 1.1E-15 113.9 10.4 110 184-301 233-365 (433)
147 2fca_A TRNA (guanine-N(7)-)-me 99.2 3.6E-11 1.2E-15 103.6 9.6 98 195-295 38-153 (213)
148 2y1w_A Histone-arginine methyl 99.2 2.5E-11 8.7E-16 112.5 8.4 105 184-294 41-154 (348)
149 3duw_A OMT, O-methyltransferas 99.2 1E-10 3.5E-15 101.3 11.6 99 193-299 56-171 (223)
150 3lbf_A Protein-L-isoaspartate 99.2 4.9E-11 1.7E-15 102.3 9.3 98 185-297 69-176 (210)
151 2pwy_A TRNA (adenine-N(1)-)-me 99.2 5.8E-11 2E-15 105.1 10.0 125 184-348 87-223 (258)
152 2yxe_A Protein-L-isoaspartate 99.2 5.3E-11 1.8E-15 102.4 9.1 99 185-296 69-178 (215)
153 3hp7_A Hemolysin, putative; st 99.2 4.8E-11 1.6E-15 106.9 8.9 140 185-349 76-232 (291)
154 3p9n_A Possible methyltransfer 99.2 1.2E-10 4.2E-15 98.1 10.9 100 194-298 43-156 (189)
155 3b3j_A Histone-arginine methyl 99.2 3.2E-11 1.1E-15 116.2 8.0 105 183-293 148-261 (480)
156 1ej0_A FTSJ; methyltransferase 99.2 1.1E-10 3.7E-15 96.8 10.3 98 193-297 20-138 (180)
157 3lcv_B Sisomicin-gentamicin re 99.2 3.9E-11 1.3E-15 104.3 7.6 136 194-352 131-274 (281)
158 3tfw_A Putative O-methyltransf 99.2 4.3E-11 1.5E-15 105.6 8.2 99 193-299 61-174 (248)
159 1o9g_A RRNA methyltransferase; 99.2 4.2E-11 1.4E-15 105.7 8.1 99 195-296 51-215 (250)
160 3r3h_A O-methyltransferase, SA 99.2 1.1E-10 3.8E-15 102.5 10.4 99 194-300 59-175 (242)
161 2bm8_A Cephalosporin hydroxyla 99.2 1.3E-10 4.4E-15 101.8 10.7 94 195-296 81-188 (236)
162 3ntv_A MW1564 protein; rossman 99.2 4.5E-11 1.5E-15 104.4 7.3 99 193-299 69-180 (232)
163 3ckk_A TRNA (guanine-N(7)-)-me 99.2 1E-10 3.5E-15 102.3 9.4 99 194-295 45-168 (235)
164 3dmg_A Probable ribosomal RNA 99.1 1.3E-10 4.3E-15 108.8 10.6 96 195-295 233-340 (381)
165 1nv8_A HEMK protein; class I a 99.1 1.1E-10 3.8E-15 105.0 9.8 95 194-293 122-247 (284)
166 1o54_A SAM-dependent O-methylt 99.1 6.9E-11 2.4E-15 106.0 8.3 101 184-296 103-214 (277)
167 2plw_A Ribosomal RNA methyltra 99.1 4.4E-10 1.5E-14 95.5 12.9 103 185-295 13-154 (201)
168 1vbf_A 231AA long hypothetical 99.1 1.3E-10 4.5E-15 101.1 9.6 99 184-297 61-167 (231)
169 3u81_A Catechol O-methyltransf 99.1 4.5E-11 1.5E-15 103.6 6.3 99 193-297 56-172 (221)
170 3q7e_A Protein arginine N-meth 99.1 8.6E-11 2.9E-15 109.0 8.3 96 193-292 64-170 (349)
171 2gpy_A O-methyltransferase; st 99.1 1.1E-10 3.8E-15 101.8 8.5 98 193-298 52-163 (233)
172 1jg1_A PIMT;, protein-L-isoasp 99.1 1.1E-10 3.7E-15 102.1 8.4 100 183-296 81-190 (235)
173 3tr6_A O-methyltransferase; ce 99.1 9.4E-11 3.2E-15 101.6 7.2 98 194-299 63-178 (225)
174 3gjy_A Spermidine synthase; AP 99.1 1.2E-10 4E-15 105.5 7.7 97 197-296 91-201 (317)
175 1dl5_A Protein-L-isoaspartate 99.1 2E-10 6.8E-15 105.1 9.3 101 184-297 66-177 (317)
176 3bzb_A Uncharacterized protein 99.1 5.9E-10 2E-14 100.2 12.0 97 194-294 78-204 (281)
177 1p91_A Ribosomal RNA large sub 99.1 2.1E-10 7.1E-15 102.3 8.8 93 194-298 84-181 (269)
178 3opn_A Putative hemolysin; str 99.1 1.5E-10 5.1E-15 101.0 7.1 147 185-349 28-184 (232)
179 3r0q_C Probable protein argini 99.1 1.6E-10 5.6E-15 108.2 7.6 101 193-297 61-171 (376)
180 2b25_A Hypothetical protein; s 99.1 2.2E-10 7.7E-15 105.6 8.3 102 184-297 96-221 (336)
181 2vdv_E TRNA (guanine-N(7)-)-me 99.1 1.7E-10 5.8E-15 101.6 6.8 94 193-294 47-172 (246)
182 1ws6_A Methyltransferase; stru 99.1 1.6E-10 5.5E-15 95.4 6.2 94 195-297 41-149 (171)
183 2fyt_A Protein arginine N-meth 99.1 4.9E-10 1.7E-14 103.5 10.1 96 193-292 62-168 (340)
184 3sso_A Methyltransferase; macr 99.1 2.2E-10 7.4E-15 106.1 7.6 95 194-297 215-326 (419)
185 2hnk_A SAM-dependent O-methylt 99.1 5.6E-10 1.9E-14 97.8 9.9 98 193-298 58-184 (239)
186 1g6q_1 HnRNP arginine N-methyl 99.0 4.3E-10 1.5E-14 103.4 9.2 96 193-292 36-142 (328)
187 3adn_A Spermidine synthase; am 99.0 2.8E-10 9.6E-15 102.7 7.6 99 194-295 82-198 (294)
188 3frh_A 16S rRNA methylase; met 99.0 9.6E-10 3.3E-14 94.7 10.4 95 194-296 104-206 (253)
189 2fhp_A Methylase, putative; al 99.0 3.4E-10 1.2E-14 94.9 7.3 98 194-298 43-157 (187)
190 2avd_A Catechol-O-methyltransf 99.0 2.9E-10 9.8E-15 98.8 6.9 98 193-298 67-182 (229)
191 3c3p_A Methyltransferase; NP_9 99.0 1.5E-10 5.3E-15 99.2 5.1 97 194-298 55-163 (210)
192 3dr5_A Putative O-methyltransf 99.0 1.9E-10 6.6E-15 99.6 5.7 94 197-298 58-166 (221)
193 2esr_A Methyltransferase; stru 99.0 1.6E-10 5.5E-15 96.2 4.6 98 194-298 30-141 (177)
194 2ift_A Putative methylase HI07 99.0 3E-10 1E-14 96.9 6.2 97 195-298 53-166 (201)
195 2nyu_A Putative ribosomal RNA 99.0 1.1E-09 3.9E-14 92.5 9.5 97 193-296 20-146 (196)
196 1sui_A Caffeoyl-COA O-methyltr 99.0 5.3E-10 1.8E-14 98.5 7.6 98 193-298 77-193 (247)
197 2pbf_A Protein-L-isoaspartate 99.0 1.5E-09 5.2E-14 94.1 10.4 94 193-297 78-195 (227)
198 1ixk_A Methyltransferase; open 99.0 1.6E-09 5.4E-14 99.0 10.9 103 193-298 116-249 (315)
199 4azs_A Methyltransferase WBDD; 99.0 2.3E-10 7.9E-15 112.9 5.7 103 193-300 64-178 (569)
200 3gdh_A Trimethylguanosine synt 99.0 7.5E-11 2.6E-15 103.4 1.9 137 194-353 77-223 (241)
201 3dou_A Ribosomal RNA large sub 99.0 6E-10 2.1E-14 94.2 7.3 102 184-295 15-139 (191)
202 1r18_A Protein-L-isoaspartate( 99.0 5E-10 1.7E-14 97.3 7.0 92 193-295 82-194 (227)
203 2oxt_A Nucleoside-2'-O-methylt 99.0 1.1E-09 3.9E-14 97.2 9.3 98 193-297 72-187 (265)
204 2wa2_A Non-structural protein 99.0 1.2E-09 4E-14 97.7 8.3 97 193-296 80-194 (276)
205 3c3y_A Pfomt, O-methyltransfer 99.0 1.2E-09 4E-14 95.7 8.0 97 193-297 68-183 (237)
206 1i1n_A Protein-L-isoaspartate 99.0 2E-09 6.8E-14 93.3 9.4 93 193-296 75-183 (226)
207 2p41_A Type II methyltransfera 99.0 1.6E-09 5.3E-14 98.4 8.8 95 193-293 80-189 (305)
208 3cbg_A O-methyltransferase; cy 99.0 6.3E-10 2.2E-14 97.1 6.0 98 194-299 71-186 (232)
209 3tma_A Methyltransferase; thum 98.9 2.6E-09 8.9E-14 99.2 10.2 108 183-295 193-317 (354)
210 2yvl_A TRMI protein, hypotheti 98.9 3E-09 1E-13 93.4 10.0 99 185-297 83-192 (248)
211 1i9g_A Hypothetical protein RV 98.9 2.2E-09 7.4E-14 96.2 9.2 102 184-297 90-205 (280)
212 2i7c_A Spermidine synthase; tr 98.9 8.5E-10 2.9E-14 99.2 6.3 98 194-294 77-191 (283)
213 3a27_A TYW2, uncharacterized p 98.9 2.6E-09 8.7E-14 95.5 9.3 98 193-299 117-223 (272)
214 1zq9_A Probable dimethyladenos 98.9 9.6E-10 3.3E-14 98.9 6.5 101 183-291 18-143 (285)
215 2fpo_A Methylase YHHF; structu 98.9 1.9E-09 6.5E-14 91.9 7.9 96 195-297 54-162 (202)
216 1uir_A Polyamine aminopropyltr 98.9 1E-09 3.5E-14 100.1 6.4 100 194-296 76-196 (314)
217 1mjf_A Spermidine synthase; sp 98.9 1E-09 3.5E-14 98.6 6.1 98 194-295 74-193 (281)
218 1iy9_A Spermidine synthase; ro 98.9 9.8E-10 3.3E-14 98.4 5.9 98 194-294 74-188 (275)
219 1xj5_A Spermidine synthase 1; 98.9 1.1E-09 3.9E-14 100.4 6.3 98 194-294 119-234 (334)
220 2b2c_A Spermidine synthase; be 98.9 9.7E-10 3.3E-14 100.1 5.7 98 194-295 107-222 (314)
221 2pt6_A Spermidine synthase; tr 98.9 1.2E-09 4.2E-14 99.8 6.1 97 194-294 115-229 (321)
222 2o07_A Spermidine synthase; st 98.9 1.2E-09 4.1E-14 99.2 5.5 99 194-295 94-209 (304)
223 4hc4_A Protein arginine N-meth 98.9 5.5E-09 1.9E-13 97.0 9.1 94 195-292 83-186 (376)
224 1wy7_A Hypothetical protein PH 98.9 1.8E-08 6E-13 85.9 11.4 88 194-282 48-141 (207)
225 1ne2_A Hypothetical protein TA 98.9 3.7E-09 1.3E-13 89.7 7.1 88 194-282 50-139 (200)
226 2cmg_A Spermidine synthase; tr 98.8 5.8E-09 2E-13 92.5 8.2 89 194-294 71-170 (262)
227 2h1r_A Dimethyladenosine trans 98.8 5.5E-09 1.9E-13 94.6 7.6 97 183-284 32-151 (299)
228 1inl_A Spermidine synthase; be 98.8 2.7E-09 9.4E-14 96.5 5.5 97 195-294 90-204 (296)
229 3k6r_A Putative transferase PH 98.8 1.4E-08 4.8E-13 90.5 9.8 120 193-344 123-252 (278)
230 3ajd_A Putative methyltransfer 98.8 7E-09 2.4E-13 92.7 7.8 104 193-299 81-215 (274)
231 3tm4_A TRNA (guanine N2-)-meth 98.8 1.4E-08 4.7E-13 94.9 9.3 121 194-350 216-353 (373)
232 2yxl_A PH0851 protein, 450AA l 98.8 2.4E-08 8.4E-13 95.6 10.5 104 193-299 257-393 (450)
233 2ih2_A Modification methylase 98.8 2.7E-08 9.4E-13 94.4 10.8 96 195-296 39-165 (421)
234 2f8l_A Hypothetical protein LM 98.7 1.2E-08 4.2E-13 94.2 7.0 99 195-296 130-257 (344)
235 2igt_A SAM dependent methyltra 98.7 2.6E-08 8.7E-13 91.5 8.4 98 195-297 153-274 (332)
236 2xyq_A Putative 2'-O-methyl tr 98.7 3.8E-08 1.3E-12 88.2 9.0 115 193-347 61-195 (290)
237 1qam_A ERMC' methyltransferase 98.7 2.8E-08 9.6E-13 87.2 7.3 88 184-275 21-115 (244)
238 1yub_A Ermam, rRNA methyltrans 98.7 1.3E-08 4.3E-13 89.5 4.7 104 183-295 19-145 (245)
239 1sqg_A SUN protein, FMU protei 98.7 6.6E-08 2.2E-12 92.1 9.6 104 193-299 244-378 (429)
240 2frx_A Hypothetical protein YE 98.6 2.2E-07 7.4E-12 89.4 11.6 102 195-299 117-250 (479)
241 3m6w_A RRNA methylase; rRNA me 98.6 6.8E-08 2.3E-12 92.1 7.6 103 193-299 99-233 (464)
242 3b5i_A S-adenosyl-L-methionine 98.6 9.9E-07 3.4E-11 81.7 14.6 151 196-349 53-298 (374)
243 2yx1_A Hypothetical protein MJ 98.6 7.8E-08 2.7E-12 88.5 7.1 93 194-298 194-294 (336)
244 2b78_A Hypothetical protein SM 98.5 3.5E-08 1.2E-12 92.6 4.2 98 194-295 211-331 (385)
245 3gru_A Dimethyladenosine trans 98.5 1.6E-07 5.5E-12 84.4 8.3 88 183-275 40-135 (295)
246 3c0k_A UPF0064 protein YCCW; P 98.5 7.8E-08 2.7E-12 90.6 6.0 98 194-295 219-339 (396)
247 1uwv_A 23S rRNA (uracil-5-)-me 98.5 1.2E-06 3.9E-11 83.5 13.9 90 193-293 284-387 (433)
248 2as0_A Hypothetical protein PH 98.5 6.9E-08 2.4E-12 90.9 5.0 98 195-296 217-336 (396)
249 3m4x_A NOL1/NOP2/SUN family pr 98.5 2.2E-07 7.4E-12 88.5 8.4 104 193-299 103-238 (456)
250 1wxx_A TT1595, hypothetical pr 98.5 1.4E-07 4.7E-12 88.5 6.5 97 195-296 209-326 (382)
251 2efj_A 3,7-dimethylxanthine me 98.5 1.9E-06 6.7E-11 79.8 13.3 149 196-347 53-290 (384)
252 3k0b_A Predicted N6-adenine-sp 98.4 4.8E-07 1.6E-11 84.8 9.1 111 183-296 191-351 (393)
253 2k4m_A TR8_protein, UPF0146 pr 98.4 8.3E-07 2.8E-11 69.9 8.8 85 193-297 33-123 (153)
254 4dmg_A Putative uncharacterize 98.4 3.4E-07 1.2E-11 85.8 7.8 99 194-297 213-328 (393)
255 3ldg_A Putative uncharacterize 98.4 1.4E-06 4.8E-11 81.3 11.4 112 182-296 183-344 (384)
256 2okc_A Type I restriction enzy 98.4 2.7E-07 9.1E-12 88.3 6.0 100 194-296 170-308 (445)
257 1m6y_A S-adenosyl-methyltransf 98.4 3.7E-07 1.3E-11 82.3 6.3 77 182-260 15-105 (301)
258 3ftd_A Dimethyladenosine trans 98.4 6.3E-07 2.2E-11 78.7 7.6 90 183-275 21-116 (249)
259 3ldu_A Putative methylase; str 98.3 7.4E-07 2.5E-11 83.4 7.7 111 183-296 185-345 (385)
260 3fut_A Dimethyladenosine trans 98.3 1E-06 3.5E-11 78.2 7.9 89 183-277 37-133 (271)
261 1m6e_X S-adenosyl-L-methionnin 98.3 6.9E-06 2.4E-10 75.5 13.1 149 195-346 51-277 (359)
262 2jjq_A Uncharacterized RNA met 98.3 2.7E-06 9.2E-11 80.6 10.6 90 194-294 289-386 (425)
263 4gqb_A Protein arginine N-meth 98.3 5E-07 1.7E-11 88.9 5.4 127 155-291 322-463 (637)
264 2qfm_A Spermine synthase; sper 98.3 8.3E-07 2.8E-11 81.3 5.9 97 194-294 187-313 (364)
265 3evf_A RNA-directed RNA polyme 98.3 2.8E-06 9.6E-11 74.3 8.8 102 193-298 72-186 (277)
266 3tqs_A Ribosomal RNA small sub 98.3 9.7E-07 3.3E-11 77.7 6.0 81 183-269 19-111 (255)
267 3uzu_A Ribosomal RNA small sub 98.3 4.2E-07 1.4E-11 81.1 3.6 68 183-252 32-105 (279)
268 3v97_A Ribosomal RNA large sub 98.2 1.8E-06 6.2E-11 86.9 8.5 98 194-295 538-657 (703)
269 1qyr_A KSGA, high level kasuga 98.2 9.4E-07 3.2E-11 77.7 5.5 89 183-275 11-111 (252)
270 1rjd_A PPM1P, carboxy methyl t 98.2 2E-05 6.7E-10 72.1 14.4 143 194-342 96-281 (334)
271 3o4f_A Spermidine synthase; am 98.2 2.8E-06 9.7E-11 75.7 7.4 97 194-294 82-197 (294)
272 3ua3_A Protein arginine N-meth 98.2 3.2E-06 1.1E-10 83.2 7.7 127 155-292 377-531 (745)
273 2qy6_A UPF0209 protein YFCK; s 98.1 2.6E-06 8.8E-11 75.1 6.2 129 195-358 60-244 (257)
274 2r6z_A UPF0341 protein in RSP 98.1 5.3E-06 1.8E-10 73.1 6.7 71 193-265 81-173 (258)
275 3gcz_A Polyprotein; flavivirus 98.1 5.2E-06 1.8E-10 72.7 6.2 106 183-293 80-199 (282)
276 3bt7_A TRNA (uracil-5-)-methyl 98.0 2.6E-06 8.8E-11 79.4 3.7 88 196-296 214-327 (369)
277 3v97_A Ribosomal RNA large sub 98.0 1.6E-05 5.6E-10 80.0 9.3 110 182-296 179-348 (703)
278 2dul_A N(2),N(2)-dimethylguano 98.0 9.1E-06 3.1E-10 75.7 6.6 92 195-295 47-164 (378)
279 2b9e_A NOL1/NOP2/SUN domain fa 97.9 3.9E-05 1.3E-09 69.4 9.2 67 193-259 100-180 (309)
280 4auk_A Ribosomal RNA large sub 97.8 0.00012 4E-09 67.2 11.3 84 193-284 209-295 (375)
281 3axs_A Probable N(2),N(2)-dime 97.8 6.1E-06 2.1E-10 77.0 2.8 93 194-295 51-158 (392)
282 2ar0_A M.ecoki, type I restric 97.8 3.2E-05 1.1E-09 75.5 7.4 100 194-296 168-313 (541)
283 3iei_A Leucine carboxyl methyl 97.8 0.0012 4E-08 60.1 16.7 146 195-349 90-281 (334)
284 3eld_A Methyltransferase; flav 97.7 9.3E-05 3.2E-09 65.3 7.9 98 193-293 79-189 (300)
285 2uyo_A Hypothetical protein ML 97.7 0.00022 7.5E-09 64.4 10.4 144 194-344 101-274 (310)
286 2oyr_A UPF0341 protein YHIQ; a 97.6 5.2E-05 1.8E-09 66.6 5.4 71 193-265 84-176 (258)
287 1wg8_A Predicted S-adenosylmet 97.6 0.00013 4.4E-09 64.3 7.2 75 181-259 10-95 (285)
288 3p8z_A Mtase, non-structural p 97.6 0.00022 7.6E-09 60.5 8.1 111 183-300 68-190 (267)
289 3ll7_A Putative methyltransfer 97.5 3.6E-05 1.2E-09 72.0 3.2 64 194-259 92-169 (410)
290 3s1s_A Restriction endonucleas 97.5 0.0003 1E-08 70.5 9.5 100 194-296 320-466 (878)
291 2px2_A Genome polyprotein [con 97.4 0.00032 1.1E-08 60.5 7.6 106 183-293 63-181 (269)
292 3cvo_A Methyltransferase-like 97.4 0.00048 1.6E-08 57.9 8.6 90 194-297 29-155 (202)
293 2vz8_A Fatty acid synthase; tr 97.4 5.6E-05 1.9E-09 85.8 3.3 142 195-348 1240-1394(2512)
294 3lkz_A Non-structural protein 97.4 0.00041 1.4E-08 60.9 7.8 105 183-293 84-202 (321)
295 3c6k_A Spermine synthase; sper 97.4 0.00016 5.5E-09 66.5 5.2 96 194-293 204-329 (381)
296 3lkd_A Type I restriction-modi 97.3 0.00057 2E-08 66.5 8.9 98 195-295 221-358 (542)
297 3khk_A Type I restriction-modi 97.3 0.00016 5.3E-09 70.6 4.9 97 196-295 245-395 (544)
298 3b73_A PHIH1 repressor-like pr 97.1 0.0003 1E-08 53.1 3.7 64 40-113 15-80 (111)
299 2heo_A Z-DNA binding protein 1 97.1 0.00024 8.3E-09 48.5 2.4 55 40-103 12-66 (67)
300 1y0u_A Arsenical resistance op 96.9 0.0012 4.2E-08 48.4 5.4 62 33-107 26-87 (96)
301 3pqk_A Biofilm growth-associat 96.8 0.002 6.8E-08 47.7 5.5 65 33-105 18-82 (102)
302 3tka_A Ribosomal RNA small sub 96.7 0.003 1E-07 57.0 7.2 78 181-260 45-135 (347)
303 1xmk_A Double-stranded RNA-spe 96.6 0.0016 5.3E-08 45.8 3.4 60 40-107 13-73 (79)
304 2wk1_A NOVP; transferase, O-me 96.6 0.0073 2.5E-07 53.5 8.4 96 194-297 105-245 (282)
305 3mq0_A Transcriptional repress 96.5 0.0017 5.7E-08 57.6 3.7 60 41-109 33-92 (275)
306 3vyw_A MNMC2; tRNA wobble urid 96.4 0.011 3.7E-07 52.8 8.7 130 194-359 95-258 (308)
307 2hzt_A Putative HTH-type trans 96.4 0.003 1E-07 47.3 4.4 63 43-110 19-82 (107)
308 3ech_A MEXR, multidrug resista 96.4 0.0089 3E-07 46.8 7.4 94 14-111 8-106 (142)
309 3jth_A Transcription activator 96.4 0.0019 6.4E-08 47.5 3.1 66 33-106 18-83 (98)
310 2oqg_A Possible transcriptiona 96.3 0.0021 7.3E-08 48.5 3.0 66 34-107 17-82 (114)
311 3f6o_A Probable transcriptiona 96.3 0.0019 6.3E-08 49.4 2.5 68 32-107 12-79 (118)
312 1u2w_A CADC repressor, cadmium 96.2 0.003 1E-07 48.6 3.4 68 32-106 36-103 (122)
313 2zwa_A Leucine carboxyl methyl 96.2 0.077 2.6E-06 53.3 14.4 148 195-349 107-309 (695)
314 1ub9_A Hypothetical protein PH 96.1 0.0032 1.1E-07 46.2 3.1 72 33-108 11-82 (100)
315 3f6v_A Possible transcriptiona 96.1 0.0031 1E-07 50.5 3.0 69 31-107 51-119 (151)
316 3cuo_A Uncharacterized HTH-typ 96.0 0.0037 1.3E-07 45.7 3.1 67 34-107 20-86 (99)
317 4a5n_A Uncharacterized HTH-typ 96.0 0.006 2.1E-07 47.4 4.3 83 15-111 12-95 (131)
318 4fzv_A Putative methyltransfer 96.0 0.02 6.8E-07 52.5 8.4 106 193-301 146-290 (359)
319 3r4k_A Transcriptional regulat 96.0 0.0026 8.8E-08 55.9 2.3 61 41-109 9-69 (260)
320 3df8_A Possible HXLR family tr 96.0 0.0046 1.6E-07 46.6 3.4 76 18-111 16-94 (111)
321 1z7u_A Hypothetical protein EF 96.0 0.0056 1.9E-07 46.2 3.9 63 43-110 27-90 (112)
322 3r24_A NSP16, 2'-O-methyl tran 96.0 0.016 5.5E-07 50.9 7.1 91 193-293 107-215 (344)
323 2xrn_A HTH-type transcriptiona 96.0 0.0039 1.3E-07 54.1 3.3 62 41-110 9-70 (241)
324 1r1u_A CZRA, repressor protein 96.0 0.0039 1.3E-07 46.6 2.9 66 33-106 21-86 (106)
325 2f2e_A PA1607; transcription f 95.9 0.0075 2.6E-07 47.9 4.4 55 52-110 36-90 (146)
326 1yyv_A Putative transcriptiona 95.9 0.0075 2.6E-07 46.9 4.2 80 17-110 23-103 (131)
327 2kko_A Possible transcriptiona 95.9 0.0022 7.4E-08 48.2 1.0 65 34-106 21-85 (108)
328 1mkm_A ICLR transcriptional re 95.8 0.0062 2.1E-07 53.0 4.1 60 41-109 11-70 (249)
329 3bdd_A Regulatory protein MARR 95.8 0.02 7E-07 44.5 6.7 67 40-110 33-99 (142)
330 2fsw_A PG_0823 protein; alpha- 95.8 0.0062 2.1E-07 45.5 3.4 80 17-110 13-93 (107)
331 2o0y_A Transcriptional regulat 95.8 0.0062 2.1E-07 53.4 3.8 60 41-109 26-85 (260)
332 1qgp_A Protein (double strande 95.7 0.0061 2.1E-07 42.6 2.8 57 40-104 16-75 (77)
333 2jsc_A Transcriptional regulat 95.7 0.0049 1.7E-07 47.0 2.4 65 34-106 17-81 (118)
334 1r7j_A Conserved hypothetical 95.7 0.009 3.1E-07 43.6 3.7 47 54-110 21-67 (95)
335 3bja_A Transcriptional regulat 95.6 0.012 4.2E-07 45.6 4.8 68 40-111 35-102 (139)
336 1oyi_A Double-stranded RNA-bin 95.6 0.0074 2.5E-07 42.4 2.9 60 38-106 17-76 (82)
337 1i4w_A Mitochondrial replicati 95.6 0.015 5.1E-07 53.2 5.7 55 195-249 58-116 (353)
338 2g7u_A Transcriptional regulat 95.6 0.0081 2.8E-07 52.6 3.8 60 41-110 17-76 (257)
339 1qbj_A Protein (double-strande 95.5 0.011 3.6E-07 41.8 3.5 60 40-107 12-74 (81)
340 3g3z_A NMB1585, transcriptiona 95.4 0.016 5.5E-07 45.5 4.8 69 39-111 32-100 (145)
341 1r1t_A Transcriptional repress 95.4 0.01 3.4E-07 45.6 3.4 66 33-106 41-106 (122)
342 2jt1_A PEFI protein; solution 95.4 0.0075 2.6E-07 42.1 2.3 45 43-90 9-58 (77)
343 3k0l_A Repressor protein; heli 95.4 0.018 6.1E-07 46.2 5.0 68 40-111 48-115 (162)
344 1on2_A Transcriptional regulat 95.4 0.012 4.2E-07 46.2 3.9 50 52-110 21-70 (142)
345 2zig_A TTHA0409, putative modi 95.4 0.018 6.2E-07 51.4 5.4 40 194-235 234-274 (297)
346 3e6m_A MARR family transcripti 95.4 0.048 1.6E-06 43.6 7.5 68 40-111 55-122 (161)
347 2fu4_A Ferric uptake regulatio 95.4 0.008 2.8E-07 42.5 2.5 49 39-90 18-72 (83)
348 2wte_A CSA3; antiviral protein 95.3 0.011 3.9E-07 51.1 3.8 63 40-111 154-216 (244)
349 2ia2_A Putative transcriptiona 95.3 0.008 2.7E-07 52.8 2.8 57 41-107 24-80 (265)
350 3nrv_A Putative transcriptiona 95.2 0.012 4.2E-07 46.3 3.5 69 39-111 41-109 (148)
351 3cdh_A Transcriptional regulat 95.2 0.028 9.7E-07 44.6 5.6 68 40-111 45-112 (155)
352 3s2w_A Transcriptional regulat 95.2 0.043 1.5E-06 43.7 6.7 67 41-111 53-119 (159)
353 2pg4_A Uncharacterized protein 95.2 0.038 1.3E-06 40.1 5.7 63 44-111 21-84 (95)
354 1xn7_A Hypothetical protein YH 95.1 0.014 4.8E-07 40.8 3.1 43 43-89 7-49 (78)
355 3f3x_A Transcriptional regulat 95.1 0.027 9.3E-07 44.1 5.2 68 39-111 38-105 (144)
356 3oop_A LIN2960 protein; protei 95.1 0.01 3.5E-07 46.5 2.5 68 40-111 39-106 (143)
357 1tbx_A ORF F-93, hypothetical 95.1 0.017 5.7E-07 42.3 3.6 65 40-111 10-78 (99)
358 2qww_A Transcriptional regulat 95.1 0.051 1.8E-06 42.9 6.7 68 40-111 43-112 (154)
359 2nyx_A Probable transcriptiona 95.1 0.053 1.8E-06 43.7 6.9 68 40-111 47-114 (168)
360 2y75_A HTH-type transcriptiona 95.0 0.023 7.7E-07 43.9 4.4 48 52-106 25-72 (129)
361 3ufb_A Type I restriction-modi 95.0 0.11 3.6E-06 50.5 9.9 104 193-296 215-363 (530)
362 2k02_A Ferrous iron transport 95.0 0.013 4.5E-07 41.8 2.6 44 43-90 7-50 (87)
363 2nnn_A Probable transcriptiona 95.0 0.0097 3.3E-07 46.3 2.2 68 40-111 40-107 (140)
364 2hr3_A Probable transcriptiona 94.9 0.028 9.7E-07 44.0 4.8 70 39-111 36-105 (147)
365 2gxg_A 146AA long hypothetical 94.9 0.028 9.7E-07 43.9 4.7 67 40-111 39-105 (146)
366 3bj6_A Transcriptional regulat 94.9 0.084 2.9E-06 41.5 7.5 67 40-110 42-108 (152)
367 3fm5_A Transcriptional regulat 94.8 0.047 1.6E-06 43.0 5.9 70 39-111 40-109 (150)
368 2htj_A P fimbrial regulatory p 94.8 0.02 6.7E-07 40.3 3.2 45 41-89 3-47 (81)
369 3bro_A Transcriptional regulat 94.8 0.024 8.2E-07 44.1 4.1 69 40-111 36-105 (141)
370 3kp7_A Transcriptional regulat 94.8 0.1 3.4E-06 41.1 7.9 67 40-111 40-108 (151)
371 1lj9_A Transcriptional regulat 94.8 0.019 6.4E-07 44.9 3.4 68 40-111 31-98 (144)
372 3hsr_A HTH-type transcriptiona 94.8 0.015 5E-07 45.5 2.7 68 40-111 38-105 (140)
373 3boq_A Transcriptional regulat 94.8 0.065 2.2E-06 42.6 6.7 69 40-111 49-117 (160)
374 3eco_A MEPR; mutlidrug efflux 94.8 0.022 7.4E-07 44.3 3.7 69 40-111 33-102 (139)
375 1jgs_A Multiple antibiotic res 94.8 0.024 8.3E-07 43.9 4.0 68 40-111 36-103 (138)
376 2fbh_A Transcriptional regulat 94.8 0.024 8.1E-07 44.4 3.9 67 40-110 39-106 (146)
377 3deu_A Transcriptional regulat 94.8 0.015 5.3E-07 47.0 2.9 69 40-111 55-123 (166)
378 2rdp_A Putative transcriptiona 94.6 0.024 8.1E-07 44.7 3.7 68 40-111 44-111 (150)
379 2eth_A Transcriptional regulat 94.6 0.03 1E-06 44.5 4.2 68 40-111 46-113 (154)
380 2fa5_A Transcriptional regulat 94.6 0.027 9.3E-07 45.0 3.9 68 40-111 51-118 (162)
381 2bv6_A MGRA, HTH-type transcri 94.6 0.032 1.1E-06 43.5 4.2 68 40-111 39-106 (142)
382 4hbl_A Transcriptional regulat 94.5 0.049 1.7E-06 42.9 5.3 68 40-111 43-110 (149)
383 1s3j_A YUSO protein; structura 94.5 0.094 3.2E-06 41.4 7.0 68 40-111 39-106 (155)
384 3bpv_A Transcriptional regulat 94.5 0.022 7.6E-07 44.1 3.0 68 40-111 31-98 (138)
385 3tgn_A ADC operon repressor AD 94.4 0.031 1.1E-06 43.8 3.9 67 39-110 39-105 (146)
386 2x4h_A Hypothetical protein SS 94.4 0.035 1.2E-06 43.2 4.1 50 51-110 29-78 (139)
387 3cjn_A Transcriptional regulat 94.3 0.03 1E-06 44.8 3.6 67 40-110 54-120 (162)
388 4aik_A Transcriptional regulat 94.3 0.053 1.8E-06 43.1 5.0 69 40-111 33-101 (151)
389 2pex_A Transcriptional regulat 94.3 0.031 1.1E-06 44.2 3.5 68 40-111 49-116 (153)
390 3jw4_A Transcriptional regulat 94.2 0.029 9.9E-07 44.2 3.3 69 40-111 43-112 (148)
391 2a61_A Transcriptional regulat 94.2 0.024 8.1E-07 44.4 2.7 68 40-111 35-102 (145)
392 1z91_A Organic hydroperoxide r 94.2 0.043 1.5E-06 42.9 4.2 68 40-111 42-109 (147)
393 1sfx_A Conserved hypothetical 94.2 0.026 8.8E-07 41.6 2.7 48 39-90 21-68 (109)
394 1ylf_A RRF2 family protein; st 94.1 0.048 1.6E-06 43.3 4.3 72 33-123 15-86 (149)
395 3k69_A Putative transcription 94.1 0.091 3.1E-06 42.3 6.0 63 33-107 13-75 (162)
396 3lwf_A LIN1550 protein, putati 94.0 0.049 1.7E-06 43.8 4.2 47 52-105 43-89 (159)
397 2h09_A Transcriptional regulat 94.0 0.03 1E-06 44.6 3.0 55 46-110 48-102 (155)
398 2lkp_A Transcriptional regulat 93.9 0.03 1E-06 42.4 2.7 53 33-90 27-79 (119)
399 2qvo_A Uncharacterized protein 93.9 0.047 1.6E-06 39.6 3.6 53 53-111 30-82 (95)
400 2frh_A SARA, staphylococcal ac 93.9 0.03 1E-06 43.0 2.6 69 40-111 39-108 (127)
401 2fbi_A Probable transcriptiona 93.8 0.023 7.9E-07 44.2 2.0 68 40-111 38-105 (142)
402 3nqo_A MARR-family transcripti 93.8 0.098 3.4E-06 43.1 5.9 71 38-111 41-112 (189)
403 2obp_A Putative DNA-binding pr 93.8 0.083 2.8E-06 38.4 4.6 54 52-110 35-88 (96)
404 1xd7_A YWNA; structural genomi 93.8 0.061 2.1E-06 42.4 4.3 57 52-123 23-79 (145)
405 2zkz_A Transcriptional repress 93.7 0.025 8.4E-07 41.5 1.8 66 33-106 22-87 (99)
406 3hrs_A Metalloregulator SCAR; 93.7 0.06 2E-06 45.6 4.5 52 51-111 18-69 (214)
407 1bja_A Transcription regulator 93.7 0.061 2.1E-06 38.9 3.7 61 40-111 18-79 (95)
408 3r0a_A Putative transcriptiona 93.7 0.032 1.1E-06 42.8 2.4 48 40-90 28-76 (123)
409 2fbk_A Transcriptional regulat 93.6 0.032 1.1E-06 45.7 2.5 69 40-111 71-141 (181)
410 3t8r_A Staphylococcus aureus C 93.5 0.053 1.8E-06 42.7 3.6 48 52-106 27-74 (143)
411 3u2r_A Regulatory protein MARR 93.2 0.11 3.7E-06 41.8 5.0 69 40-111 48-117 (168)
412 2lnb_A Z-DNA-binding protein 1 92.9 0.058 2E-06 36.9 2.4 55 40-103 21-75 (80)
413 1g55_A DNA cytosine methyltran 92.6 0.56 1.9E-05 42.6 9.5 125 196-345 2-145 (343)
414 2qlz_A Transcription factor PF 92.5 0.026 9E-07 48.4 0.4 67 33-107 7-79 (232)
415 2p4w_A Transcriptional regulat 92.4 0.083 2.8E-06 44.2 3.3 70 33-107 10-81 (202)
416 3iht_A S-adenosyl-L-methionine 92.4 0.12 4.2E-06 40.7 4.0 54 196-249 41-94 (174)
417 3i71_A Ethanolamine utilizatio 92.4 0.16 5.6E-06 32.3 3.8 50 46-105 11-60 (68)
418 4g6q_A Putative uncharacterize 91.7 0.058 2E-06 44.4 1.6 72 33-109 18-92 (182)
419 2fxa_A Protease production reg 91.7 0.079 2.7E-06 44.5 2.4 68 40-111 50-117 (207)
420 3u1d_A Uncharacterized protein 91.5 0.2 7E-06 39.5 4.5 69 39-110 30-105 (151)
421 3g7u_A Cytosine-specific methy 91.4 1.1 3.8E-05 41.2 10.0 96 197-299 3-122 (376)
422 4b8x_A SCO5413, possible MARR- 91.2 0.11 3.8E-06 40.9 2.7 68 41-111 38-106 (147)
423 1okr_A MECI, methicillin resis 91.1 0.067 2.3E-06 40.6 1.2 61 41-110 13-80 (123)
424 2o03_A Probable zinc uptake re 91.0 0.14 4.9E-06 39.5 3.1 51 37-90 10-65 (131)
425 1q1h_A TFE, transcription fact 90.9 0.087 3E-06 39.2 1.7 47 40-89 20-66 (110)
426 1g60_A Adenine-specific methyl 90.8 0.33 1.1E-05 42.2 5.6 40 194-235 211-251 (260)
427 2pn6_A ST1022, 150AA long hypo 90.6 0.16 5.6E-06 40.0 3.1 47 39-89 4-50 (150)
428 1uly_A Hypothetical protein PH 90.6 0.21 7.2E-06 41.4 3.9 52 33-89 15-66 (192)
429 2fe3_A Peroxide operon regulat 90.5 0.26 9E-06 38.7 4.3 62 37-103 21-87 (145)
430 2c7p_A Modification methylase 90.5 1.9 6.6E-05 38.7 10.6 120 196-345 11-149 (327)
431 2cfx_A HTH-type transcriptiona 90.4 0.19 6.4E-06 39.4 3.3 47 40-90 7-53 (144)
432 2esh_A Conserved hypothetical 90.3 0.63 2.2E-05 35.0 6.1 71 35-110 10-90 (118)
433 2w25_A Probable transcriptiona 90.2 0.19 6.5E-06 39.7 3.3 47 40-90 9-55 (150)
434 1p6r_A Penicillinase repressor 89.9 0.12 4E-06 36.2 1.6 50 40-90 11-61 (82)
435 2xvc_A ESCRT-III, SSO0910; cel 89.9 0.16 5.5E-06 32.4 2.0 47 40-89 12-58 (59)
436 4esf_A PADR-like transcription 89.8 0.52 1.8E-05 35.5 5.3 72 34-110 7-86 (117)
437 1p4x_A Staphylococcal accessor 89.7 0.23 7.9E-06 43.0 3.6 69 40-111 160-229 (250)
438 4fx0_A Probable transcriptiona 89.6 0.25 8.6E-06 38.9 3.5 66 41-110 36-105 (148)
439 2p5v_A Transcriptional regulat 89.5 0.23 7.8E-06 39.8 3.3 47 40-90 12-58 (162)
440 2cg4_A Regulatory protein ASNC 89.2 0.22 7.4E-06 39.4 2.9 47 40-90 10-56 (152)
441 2d1h_A ST1889, 109AA long hypo 89.2 0.15 5.3E-06 37.3 1.8 36 52-90 35-70 (109)
442 2k4b_A Transcriptional regulat 89.1 0.11 3.7E-06 38.1 0.9 50 40-90 37-87 (99)
443 3i4p_A Transcriptional regulat 88.9 0.26 9E-06 39.5 3.2 47 39-89 4-50 (162)
444 2cyy_A Putative HTH-type trans 88.9 0.22 7.4E-06 39.4 2.6 47 40-90 9-55 (151)
445 1ku9_A Hypothetical protein MJ 88.6 0.21 7.1E-06 38.9 2.4 47 41-90 29-75 (152)
446 2dbb_A Putative HTH-type trans 88.6 0.27 9.1E-06 38.8 3.0 47 40-90 11-57 (151)
447 1i1g_A Transcriptional regulat 88.5 0.25 8.6E-06 38.3 2.8 47 40-90 6-52 (141)
448 1j5y_A Transcriptional regulat 88.5 0.45 1.5E-05 39.1 4.4 58 38-105 21-79 (187)
449 3cta_A Riboflavin kinase; stru 88.5 0.28 9.7E-06 41.7 3.3 54 52-111 26-79 (230)
450 2ia0_A Putative HTH-type trans 88.4 0.31 1.1E-05 39.5 3.3 47 39-89 18-64 (171)
451 2e1c_A Putative HTH-type trans 88.3 0.29 9.9E-06 39.7 3.1 47 39-89 28-74 (171)
452 1v4r_A Transcriptional repress 88.2 0.47 1.6E-05 34.6 3.9 52 35-90 16-69 (102)
453 3tos_A CALS11; methyltransfera 88.1 0.71 2.4E-05 40.0 5.5 94 196-297 70-218 (257)
454 3ggo_A Prephenate dehydrogenas 88.0 1.5 5.1E-05 39.2 7.9 84 196-284 33-120 (314)
455 2oo3_A Protein involved in cat 88.0 1 3.4E-05 39.6 6.5 98 196-300 92-203 (283)
456 2xig_A Ferric uptake regulatio 87.8 0.43 1.5E-05 37.7 3.7 51 37-90 26-81 (150)
457 1fx7_A Iron-dependent represso 87.5 0.27 9.3E-06 41.9 2.5 49 54-111 25-73 (230)
458 3k2z_A LEXA repressor; winged 87.1 0.36 1.2E-05 40.0 3.0 37 51-90 22-58 (196)
459 3qv2_A 5-cytosine DNA methyltr 86.8 2.1 7.1E-05 38.5 8.1 125 195-345 9-156 (327)
460 1mzb_A Ferric uptake regulatio 86.8 0.35 1.2E-05 37.5 2.6 60 38-102 18-83 (136)
461 2vn2_A DNAD, chromosome replic 86.5 0.63 2.1E-05 35.6 3.9 35 53-90 51-85 (128)
462 3mwm_A ZUR, putative metal upt 86.4 0.44 1.5E-05 37.1 3.0 62 37-103 13-79 (139)
463 1lss_A TRK system potassium up 86.2 3.7 0.00013 31.0 8.4 86 197-293 5-100 (140)
464 1sfu_A 34L protein; protein/Z- 86.2 0.79 2.7E-05 31.3 3.7 52 44-103 21-72 (75)
465 3hhh_A Transcriptional regulat 86.1 0.85 2.9E-05 34.3 4.4 73 33-110 8-88 (116)
466 2py6_A Methyltransferase FKBM; 86.0 1.1 3.6E-05 41.8 5.9 53 194-246 225-290 (409)
467 3f8b_A Transcriptional regulat 85.9 1.3 4.4E-05 33.2 5.3 73 33-110 7-89 (116)
468 3pvc_A TRNA 5-methylaminomethy 85.7 0.83 2.9E-05 45.6 5.4 118 195-347 58-231 (689)
469 3elk_A Putative transcriptiona 85.7 0.87 3E-05 34.2 4.2 73 33-110 9-89 (117)
470 2qq9_A Diphtheria toxin repres 85.5 0.81 2.8E-05 38.8 4.5 50 53-111 24-73 (226)
471 3fwz_A Inner membrane protein 85.5 2.6 8.7E-05 32.4 7.1 87 196-293 7-103 (140)
472 2p8t_A Hypothetical protein PH 85.4 0.84 2.9E-05 37.8 4.3 49 52-110 29-77 (200)
473 1zkd_A DUF185; NESG, RPR58, st 84.9 0.91 3.1E-05 41.8 4.8 36 194-229 79-121 (387)
474 3ps9_A TRNA 5-methylaminomethy 84.7 2 6.9E-05 42.7 7.6 33 195-227 66-110 (676)
475 2dk5_A DNA-directed RNA polyme 84.6 0.66 2.2E-05 33.2 2.9 47 41-90 23-70 (91)
476 1hsj_A Fusion protein consisti 84.5 0.47 1.6E-05 45.1 2.8 69 40-111 406-475 (487)
477 2pjp_A Selenocysteine-specific 84.5 0.9 3.1E-05 34.3 3.9 55 40-105 9-63 (121)
478 3ew7_A LMO0794 protein; Q8Y8U8 84.5 4.2 0.00014 33.4 8.5 95 198-296 2-103 (221)
479 1yg2_A Gene activator APHA; vi 84.4 0.88 3E-05 37.0 4.1 64 40-108 4-77 (179)
480 2g9w_A Conserved hypothetical 84.0 0.54 1.8E-05 36.4 2.5 48 40-90 11-62 (138)
481 3b1f_A Putative prephenate deh 83.7 2.9 9.9E-05 36.5 7.5 83 197-284 7-93 (290)
482 1xma_A Predicted transcription 83.6 0.67 2.3E-05 36.4 2.9 72 34-110 37-118 (145)
483 1cf7_A Protein (transcription 83.5 0.74 2.5E-05 31.7 2.7 37 52-90 29-65 (76)
484 1p4x_A Staphylococcal accessor 83.4 0.93 3.2E-05 39.1 3.9 69 40-111 36-105 (250)
485 2dph_A Formaldehyde dismutase; 83.0 3 0.0001 38.4 7.6 101 193-297 183-301 (398)
486 3ius_A Uncharacterized conserv 82.7 7.2 0.00024 33.6 9.6 94 197-296 6-103 (286)
487 3llv_A Exopolyphosphatase-rela 82.4 6.5 0.00022 29.9 8.3 62 196-260 6-77 (141)
488 2v79_A DNA replication protein 82.3 1.1 3.7E-05 34.7 3.5 35 52-89 50-84 (135)
489 2w57_A Ferric uptake regulatio 82.2 0.55 1.9E-05 37.1 1.9 50 38-90 17-72 (150)
490 1bia_A BIRA bifunctional prote 82.0 0.9 3.1E-05 40.8 3.4 57 40-105 7-63 (321)
491 3s2e_A Zinc-containing alcohol 82.0 3.5 0.00012 36.9 7.5 92 193-296 164-264 (340)
492 3l7w_A Putative uncharacterize 82.0 0.77 2.6E-05 33.9 2.5 69 37-110 8-81 (108)
493 3h2s_A Putative NADH-flavin re 81.8 8.6 0.00029 31.6 9.4 95 198-296 2-105 (224)
494 3uko_A Alcohol dehydrogenase c 81.5 3.9 0.00013 37.3 7.7 94 193-297 191-297 (378)
495 2o0m_A Transcriptional regulat 81.5 0.29 1E-05 44.5 0.0 61 40-111 22-82 (345)
496 1pl8_A Human sorbitol dehydrog 81.4 4.8 0.00016 36.4 8.2 93 193-296 169-274 (356)
497 3ubt_Y Modification methylase 81.0 6.8 0.00023 34.8 9.0 119 198-344 2-138 (331)
498 2b0l_A GTP-sensing transcripti 80.8 1.1 3.6E-05 32.8 2.9 47 40-90 30-77 (102)
499 4h0n_A DNMT2; SAH binding, tra 80.3 2.2 7.7E-05 38.4 5.5 125 197-346 4-146 (333)
500 1sd4_A Penicillinase repressor 80.3 0.63 2.2E-05 35.1 1.6 50 40-90 12-62 (126)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=2.3e-54 Score=404.24 Aligned_cols=328 Identities=19% Similarity=0.306 Sum_probs=291.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
++...+++++.||+.+++|++|+++||||.|.+.++|+|++|||+++|+ +++.+.||||+|++.|++++..+ +.
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~---~~ 80 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETR---GG 80 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEecc---Cc
Confidence 6777899999999999999999999999999875579999999999999 67999999999999999987542 11
Q ss_pred ccceecchhhh-hhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhC---CChhHHhhcCCcHHHHHHH
Q 018116 97 EEAYGLTAISA-LLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHG---KNYWDYMNQNPGLSQRFNQ 172 (360)
Q Consensus 97 ~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~ 172 (360)
.+.|++|+.+. +|.++++.++..++.+.. +..+..|..|.+.+++|+ +++...+| .++|+++.++++....|.+
T Consensus 81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~ 158 (353)
T 4a6d_A 81 KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQ 158 (353)
T ss_dssp EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHH
T ss_pred cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHH
Confidence 46799999987 677788888888877653 346788999999999998 67887777 3789999999999999999
Q ss_pred HhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC------CCCeEEEeCC
Q 018116 173 AMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ------TENLKYIAGD 246 (360)
Q Consensus 173 ~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~ri~~~~~D 246 (360)
+|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+|
T Consensus 159 aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD 236 (353)
T 4a6d_A 159 ALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGD 236 (353)
T ss_dssp HHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESC
T ss_pred HHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCc
Confidence 999988777788888888 78889999999999999999999999999999999999887653 5899999999
Q ss_pred CCC-CCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc
Q 018116 247 MFQ-YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK 325 (360)
Q Consensus 247 ~~~-~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~ 325 (360)
+++ +.|++|+|+++++||+|+|++++++|++++++|+| ||+|+|+|.+.++....+ .....+|+.|+...+|+
T Consensus 237 ~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~g~ 310 (353)
T 4a6d_A 237 FFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTEGQ 310 (353)
T ss_dssp TTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSSCC
T ss_pred cccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCCCc
Confidence 998 46689999999999999999999999999999999 999999999988765543 34467899999888999
Q ss_pred ccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 326 ERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.||.+||+++|+++||+.++++++++..++|+|+|
T Consensus 311 ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 311 ERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 99999999999999999999999999999999987
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=2.6e-52 Score=391.90 Aligned_cols=345 Identities=24% Similarity=0.434 Sum_probs=297.8
Q ss_pred chhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCC-CCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCcee
Q 018116 11 SVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHG-RPITLSELVSALKI--QPTKTSNLFRFMRLLVHMGLFS 87 (360)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~-~~~t~~ela~~~~~--~p~~~~~l~~lL~~L~~~g~l~ 87 (360)
...+..++...++++++|++.+++|++|+++|||++|..++ +|+|++|||+++|+ +|.++..++||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 55667788999999999999999999999999999998753 69999999999997 6533449999999999999999
Q ss_pred ccccC-CCC-cccceecchhhhhhhcCC-CCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCC
Q 018116 88 KTKVG-GEK-EEEAYGLTAISALLIKDK-SYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNP 164 (360)
Q Consensus 88 ~~~~~-~~~-~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~ 164 (360)
++... ++| .+++|++|+.++.|..++ +.++.+++.+...+.++..|.+|.+++|+|. +||+..+|.++|+++.++|
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~ 171 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDP 171 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCH
Confidence 86210 000 026899999999887654 5688888777656667889999999999987 7999999999999999999
Q ss_pred cHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 018116 165 GLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIA 244 (360)
Q Consensus 165 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~ 244 (360)
+..+.|+++|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+|++|+.
T Consensus 172 ~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 250 (364)
T 3p9c_A 172 RFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVG 250 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEe
Confidence 99999999999887766677777775 25678999999999999999999999999999999999999998889999999
Q ss_pred CCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc-ccC
Q 018116 245 GDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV-SVD 323 (360)
Q Consensus 245 ~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~ 323 (360)
+|+++++|..|+|++++++|+|+++++.++|++++++|+| ||+|+|.|.+.++.............+++.|+. ..+
T Consensus 251 ~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~ 327 (364)
T 3p9c_A 251 GDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG 327 (364)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred CCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccC
Confidence 9999877766999999999999999999999999999999 999999999987754432122233567888774 468
Q ss_pred CcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 324 GKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 324 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
|+.||.++|+++|+++||+.+++.++++..++||++|
T Consensus 328 g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 328 GRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 9999999999999999999999999999999999997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=1.6e-51 Score=387.25 Aligned_cols=345 Identities=28% Similarity=0.476 Sum_probs=294.1
Q ss_pred chhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhC---CCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCce
Q 018116 11 SVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSH---GRPITLSELVSALK-IQPTKTSNLFRFMRLLVHMGLF 86 (360)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~---~~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~~~g~l 86 (360)
.+.+..++...+++++.|++.+++|++|+++|||+.|... ++|+|++|||+++| .+|.+++.+.||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 5567788999999999999999999999999999999873 24799999999998 4653446999999999999999
Q ss_pred eccccC-CCC-cccceecchhhhhhhcC-CCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcC
Q 018116 87 SKTKVG-GEK-EEEAYGLTAISALLIKD-KSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQN 163 (360)
Q Consensus 87 ~~~~~~-~~~-~~~~y~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~ 163 (360)
++.... ++| .+++|++|+.++.|..+ ++.++++++.+...+.++..|.+|.+++++|. ++|+..+|.++|+|+.++
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~ 172 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTD 172 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTC
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhC
Confidence 986200 000 02689999999977754 46788888877656667889999999999987 799999999999999999
Q ss_pred CcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 018116 164 PGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYI 243 (360)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~ 243 (360)
++..+.|.++|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++|+
T Consensus 173 ~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 251 (368)
T 3reo_A 173 HRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHL 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEE
Confidence 999999999999887766677777765 2567799999999999999999999999999999999999999888899999
Q ss_pred eCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc-c
Q 018116 244 AGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS-V 322 (360)
Q Consensus 244 ~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 322 (360)
.+|+++++|..|+|++.+++|+|+++++.++|++++++|+| ||+|+|.|.+.++.............+++.|+.. .
T Consensus 252 ~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 328 (368)
T 3reo_A 252 GGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNP 328 (368)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSS
T ss_pred ecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcC
Confidence 99999877766999999999999999999999999999999 9999999999877554321222345677777754 4
Q ss_pred CCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 323 DGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 323 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+|+.||.++|+++|+++||+.+++.+..+..++|+++|
T Consensus 329 ~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 329 GGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp BCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 88999999999999999999999999999999999987
No 4
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=3.1e-51 Score=383.51 Aligned_cols=347 Identities=45% Similarity=0.837 Sum_probs=296.9
Q ss_pred ccccccCCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHH
Q 018116 2 DTIENEGGISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLV 81 (360)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~ 81 (360)
.|||... ..+++++..++++++.+++.+++|++++++|||+.|+..++|.|++|||+++|++|.+++.+.||||+|+
T Consensus 3 ~~~~~~~---~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~ 79 (352)
T 1fp2_A 3 SSINGRK---PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLA 79 (352)
T ss_dssp -----CC---STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHH
T ss_pred ccccCCC---hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHH
Confidence 3677744 4788899999999999999999999999999999998743599999999999998766889999999999
Q ss_pred hCCceecc--ccCCCCcccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhh-cCCCchhHHhhCCChhH
Q 018116 82 HMGLFSKT--KVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFK-GNDISVWETVHGKNYWD 158 (360)
Q Consensus 82 ~~g~l~~~--~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~~g~~~~~ 158 (360)
+.|+|++. + +++|++|+.++.|..+++.++++++.+..++.++..|.+|+++++ +|. ++|+..+|.++|+
T Consensus 80 ~~gll~~~~~~------~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~ 152 (352)
T 1fp2_A 80 HNGFFEIITKE------EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWD 152 (352)
T ss_dssp HTTSEEEEESS------SEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHH
T ss_pred hCCeEEEecCC------CCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHH
Confidence 99999987 3 489999999999998887788888877655556788999999999 665 7899889999999
Q ss_pred HhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCC
Q 018116 159 YMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTE 238 (360)
Q Consensus 159 ~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 238 (360)
++.++|+....|.+.|........+. +..+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++..
T Consensus 153 ~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 231 (352)
T 1fp2_A 153 FLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN 231 (352)
T ss_dssp HHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBT
T ss_pred HHHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCC
Confidence 99999999999999999887666555 77773336788999999999999999999999999999999999999998767
Q ss_pred CeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh
Q 018116 239 NLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM 318 (360)
Q Consensus 239 ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 318 (360)
+++++.+|+++++|+||+|++.+++|||+++++.++|++++++|+|+++||+|+|.|...++....+........+++.|
T Consensus 232 ~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 311 (352)
T 1fp2_A 232 NLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM 311 (352)
T ss_dssp TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG
T ss_pred CcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHH
Confidence 79999999988777899999999999999999999999999999972237999999998876543211112334567766
Q ss_pred hcccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 319 SVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 319 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+. .+++.++.++|.++|+++||+.+++.+.++..++|+++|
T Consensus 312 ~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 312 AC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp GG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred Hh-ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 65 558889999999999999999999999988889999987
No 5
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=1.4e-50 Score=379.86 Aligned_cols=348 Identities=48% Similarity=0.816 Sum_probs=297.6
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc
Q 018116 12 VRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV 91 (360)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~ 91 (360)
.++++++..++++++.+++.+++|++++++|||+.|+..++|.|++|||+++|++|.+++.+.||||+|++.|+|++...
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~ 83 (358)
T 1zg3_A 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIV 83 (358)
T ss_dssp TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecc
Confidence 36788999999999999999999999999999999987435999999999999987678999999999999999998710
Q ss_pred --CC-CCc-ccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCC-CchhHHhhCCChhHHhhcCCcH
Q 018116 92 --GG-EKE-EEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGND-ISVWETVHGKNYWDYMNQNPGL 166 (360)
Q Consensus 92 --~~-~~~-~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~~g~~~~~~~~~~~~~ 166 (360)
.+ +|. +++|++|+.++.|.++++.++++++.+..++.++..|.+|++++++|. .++|+.++|.++|+++.++|+.
T Consensus 84 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~ 163 (358)
T 1zg3_A 84 KGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSES 163 (358)
T ss_dssp CCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGH
T ss_pred cccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhh
Confidence 00 000 278999999999988887788888887655566789999999999983 2789988999999999999999
Q ss_pred HH--HHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 018116 167 SQ--RFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIA 244 (360)
Q Consensus 167 ~~--~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~ 244 (360)
.. .|.+.|........ .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++..+++++.
T Consensus 164 ~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 242 (358)
T 1zg3_A 164 STLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVG 242 (358)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEE
T ss_pred hhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEe
Confidence 99 99999988766555 6777774336778999999999999999999999999999999999999988767799999
Q ss_pred CCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCC
Q 018116 245 GDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG 324 (360)
Q Consensus 245 ~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 324 (360)
+|+++++|+||+|++++++|+|+++++.++|++++++|+|+++||+|+|.|.+.++....+........+++.|+...+|
T Consensus 243 ~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 322 (358)
T 1zg3_A 243 GDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 322 (358)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCC
Confidence 99998777899999999999999999999999999999972126999999999876544311122345677777766678
Q ss_pred cccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 325 KERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+.++.++|.++|+++||+.+++.+.++..++|+++|
T Consensus 323 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 323 KERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 999999999999999999999999988899999987
No 6
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=2.6e-50 Score=376.65 Aligned_cols=324 Identities=25% Similarity=0.383 Sum_probs=288.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCC
Q 018116 15 LFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGE 94 (360)
Q Consensus 15 ~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~ 94 (360)
..++..++++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.||||+|++.|+|++ +
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~---- 88 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S---- 88 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c----
Confidence 34678899999999999999999999999999986 79999999999999 56899999999999999999 4
Q ss_pred CcccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHh
Q 018116 95 KEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAM 174 (360)
Q Consensus 95 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 174 (360)
+++|++|+.+..|..+++.++.+++.+...+..+..|.+|++++++|. ++|+..+|.++|+++.++|+....|.++|
T Consensus 89 --~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 165 (348)
T 3lst_A 89 --DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGM 165 (348)
T ss_dssp --TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHH
T ss_pred --CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHH
Confidence 589999999998888777788888876555556789999999999887 68888899999999999999999999999
Q ss_pred hhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCC
Q 018116 175 ISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-----TENLKYIAGDMFQ 249 (360)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~ri~~~~~D~~~ 249 (360)
..........+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+. .+||+++.+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 243 (348)
T 3lst_A 166 ETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLR 243 (348)
T ss_dssp HHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTT
T ss_pred HHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCC
Confidence 9888777778888888 77889999999999999999999999999999999877763321 5789999999987
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 250 YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 250 ~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
++|+||+|++.+++|||+++++.++|++++++|+| ||+|+|.|.+.++.... ......++.|+...+++.++.
T Consensus 244 ~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~~~~~~t~ 316 (348)
T 3lst_A 244 EVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDA----HQSKEMDFMMLAARTGQERTA 316 (348)
T ss_dssp CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSC----CHHHHHHHHHHHTTSCCCCBH
T ss_pred CCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhhhcChhhhhcCCCcCCCH
Confidence 77799999999999999999999999999999999 99999999988776433 223466777776678899999
Q ss_pred HHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 330 EEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
++|.++|+++||+++++.+..+..++|+++|
T Consensus 317 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 317 AELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 9999999999999999999878899999986
No 7
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=1e-49 Score=375.40 Aligned_cols=322 Identities=25% Similarity=0.458 Sum_probs=288.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
....++++++.|++.+++|++++++|||+.|+. +|.|++|||+++|+ +++.+.||||+|++.|++++.+
T Consensus 37 ~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~------ 105 (369)
T 3gwz_A 37 AAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG------ 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC------
Confidence 556789999999999999999999999999985 79999999999999 5689999999999999999976
Q ss_pred ccc-eecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhh
Q 018116 97 EEA-YGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMI 175 (360)
Q Consensus 97 ~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 175 (360)
+++ |++|+.++.|..+++.++.+++.+...+..+..|.+|.++++++. ++|...+|.++|+++.++++....|.++|.
T Consensus 106 ~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 184 (369)
T 3gwz_A 106 HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMG 184 (369)
T ss_dssp STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHH
Confidence 578 999999998888777778888877655445788999999999987 678888999999999999999999999999
Q ss_pred hCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCC
Q 018116 176 SDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMF 248 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~ 248 (360)
.........+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.+++ .+||+|+.+|++
T Consensus 185 ~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 262 (369)
T 3gwz_A 185 SVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF 262 (369)
T ss_dssp HHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC
Confidence 887777777888887 67889999999999999999999999999999999888887763 578999999999
Q ss_pred CCCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 249 QYIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 249 ~~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
+++| +||+|++.+++|+|+++++.++|++++++|+| ||+|+|.|.+.++.... . ....++.|+...+++.+
T Consensus 263 ~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~~g~~~ 334 (369)
T 3gwz_A 263 ETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLLVLVGGAER 334 (369)
T ss_dssp TCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHHSCCCB
T ss_pred CCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHHhhcCCccC
Confidence 8777 79999999999999999999999999999999 99999999998776443 1 35677777766789999
Q ss_pred CHHHHHHHHHHCCCceeEEEe-eCCceeEEEEeC
Q 018116 328 TDEEWKTLFLDAGFTHYKITN-VFGLKSLIEVYP 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 360 (360)
+.++|.++|+++||+++++.+ ..+..++|+++|
T Consensus 335 t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 335 SESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp CHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 999999999999999999999 578899999986
No 8
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=1.4e-49 Score=369.46 Aligned_cols=317 Identities=25% Similarity=0.369 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCccc
Q 018116 19 HGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEE 98 (360)
Q Consensus 19 ~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~ 98 (360)
...+++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.||||+|++.|++++.+ ++
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~------~~ 74 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG------QG 74 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC------CC
Confidence 4567899999999999999999999999985 79999999999999 5689999999999999999986 58
Q ss_pred ceecchhhhhhhcCCCCChhhhhhhhcCcccc-chhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhC
Q 018116 99 AYGLTAISALLIKDKSYCLSPLVSGILDPENI-FPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISD 177 (360)
Q Consensus 99 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 177 (360)
.|++|+.++.|..+++.++.+++.+...+..+ ..|.+|+++++++. ++|+..+|.++|+++.++|+....|.++|...
T Consensus 75 ~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 153 (332)
T 3i53_A 75 VYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHH 153 (332)
T ss_dssp BEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 99999999988877777788887765332334 78999999999987 67888899999999999999999999999887
Q ss_pred cchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCC
Q 018116 178 SEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQY 250 (360)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~~ 250 (360)
.....+.+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .+||+|+.+|++++
T Consensus 154 ~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 231 (332)
T 3i53_A 154 LELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231 (332)
T ss_dssp HHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC
Confidence 6655555666666 56678999999999999999999999999999999888887763 47899999999987
Q ss_pred CC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 251 IP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 251 ~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
+| +||+|++++++|||+++++.++|++++++|+| ||+|+|.|.+.++. .. ...+++.|+...+++.++.
T Consensus 232 ~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~~t~ 301 (332)
T 3i53_A 232 LPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKERSL 301 (332)
T ss_dssp CCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCCCCH
T ss_pred CCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCCCCH
Confidence 77 79999999999999999999999999999999 99999999988765 21 1356777766678999999
Q ss_pred HHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 330 EEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
++|.++|+++||+++++.+.++ .++|++++
T Consensus 302 ~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 302 AELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999999999999988 99999975
No 9
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.8e-48 Score=367.40 Aligned_cols=342 Identities=27% Similarity=0.502 Sum_probs=277.4
Q ss_pred hhhhcchHHHHH--HHHHHHHHHHHHHHHHHhCcchhhhhCCC-C---CCHHHHHHHcCC---CCCCcccHHHHHHHHHh
Q 018116 12 VRELFEGHGQVI--RLVFNHLSAMSLKGAVELGIADIIHSHGR-P---ITLSELVSALKI---QPTKTSNLFRFMRLLVH 82 (360)
Q Consensus 12 ~~~~~~~~~~~~--~~~~g~~~~~~L~~a~~l~lf~~L~~~~~-~---~t~~ela~~~~~---~p~~~~~l~~lL~~L~~ 82 (360)
.++.+++...++ +++.|++.+++|++++++|||+.|+.. + | .|++|||+++|+ +|.+++.+.||||+|++
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~-g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~ 94 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA-TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS 94 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC-SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhc-CCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh
Confidence 345668888899 999999999999999999999999863 3 6 999999999999 77667999999999999
Q ss_pred CCceecc----ccCCCCcccceecchhhhhhhcCCC-CChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChh
Q 018116 83 MGLFSKT----KVGGEKEEEAYGLTAISALLIKDKS-YCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYW 157 (360)
Q Consensus 83 ~g~l~~~----~~~~~~~~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~ 157 (360)
.|+|++. +++ ..+++|++|+.+..|..+++ .++++++.+..++.++..|.+|+++++++..+||+..+|.++|
T Consensus 95 ~gll~~~~~~~~~g--~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~ 172 (372)
T 1fp1_D 95 YSVLTSTTRTIEDG--GAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKY 172 (372)
T ss_dssp TTSEEEEEEECTTS--CEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC-------------
T ss_pred CCceEecccccCCC--CcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHH
Confidence 9999987 210 00258999999998888876 6788888876555667889999999998833789888899999
Q ss_pred HHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCC
Q 018116 158 DYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQT 237 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 237 (360)
+++.++|+....|.+.|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++.
T Consensus 173 ~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~ 251 (372)
T 1fp1_D 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL 251 (372)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC
T ss_pred HHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhc
Confidence 999999999999999998877666677777774 2567789999999999999999999999999999999999999877
Q ss_pred CCeEEEeCCCCCCCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh
Q 018116 238 ENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL 317 (360)
Q Consensus 238 ~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~ 317 (360)
++++++.+|+++++|.||+|++.+++|||+++++.++|++++++|+| ||+|+|.|...+.....+.........++.
T Consensus 252 ~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~ 328 (372)
T 1fp1_D 252 SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNL 328 (372)
T ss_dssp TTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHH
Confidence 78999999998877789999999999999999999999999999999 999999999887654321011123456776
Q ss_pred hhcccCCcccCHHHHHHHHHHCCCceeEEEee-CCceeEEEEeC
Q 018116 318 MSVSVDGKERTDEEWKTLFLDAGFTHYKITNV-FGLKSLIEVYP 360 (360)
Q Consensus 318 ~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 360 (360)
|+...+++.++.++|.++|+++||+++++.+. ++..++|+++|
T Consensus 329 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 329 MFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 66545688999999999999999999999985 45259999987
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.1e-48 Score=359.27 Aligned_cols=319 Identities=26% Similarity=0.406 Sum_probs=282.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCc
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKE 96 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 96 (360)
.+...+++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.|||++|++.|++++.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 567889999999999999999999999999975 79999999999999 5799999999999999999985
Q ss_pred ccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhh
Q 018116 97 EEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMIS 176 (360)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 176 (360)
++.|++|+.++.|. +++.++.+++.+..++.. ..|.+|+++++++. ++|+..+|.++|+++.++|+....|.+.| .
T Consensus 76 ~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~ 151 (334)
T 2ip2_A 76 RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-K 151 (334)
T ss_dssp TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-G
T ss_pred CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-H
Confidence 58999999999888 777788888877655444 88999999999987 78988899999999999999999999999 7
Q ss_pred CcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC
Q 018116 177 DSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ 249 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~ 249 (360)
......+.+++.++ +.+ .+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++++++.+|+++
T Consensus 152 ~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 228 (334)
T 2ip2_A 152 ASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ 228 (334)
T ss_dssp GGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT
T ss_pred HHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC
Confidence 77666677888777 566 9999999999999999999999999999999877777653 4789999999988
Q ss_pred CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccC
Q 018116 250 YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERT 328 (360)
Q Consensus 250 ~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t 328 (360)
++| +||+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++.... .....+++.|+...+|+.++
T Consensus 229 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t 301 (334)
T 2ip2_A 229 EVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGRHRT 301 (334)
T ss_dssp CCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCCCCB
T ss_pred CCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCcCCC
Confidence 766 59999999999999999999999999999999 99999999988765432 23356677776656788999
Q ss_pred HHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 329 DEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.++|.++++++||+++++.+.++..++|+++|
T Consensus 302 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 302 TEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999999999988899999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=1.4e-45 Score=346.31 Aligned_cols=327 Identities=16% Similarity=0.202 Sum_probs=266.1
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecccc
Q 018116 12 VRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKV 91 (360)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~ 91 (360)
+.+++++..++++++.|++.+++|++++++|||+.|+.+++|+|++|||+++|+ +++.++||||+|++.|+|+++
T Consensus 9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~-- 83 (363)
T 3dp7_A 9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLE-- 83 (363)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEE--
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEec--
Confidence 346778999999999999999999999999999999874479999999999999 579999999999999999886
Q ss_pred CCCCcccceecchhhhhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhC--CChhHHhhcCCcHHHH
Q 018116 92 GGEKEEEAYGLTAISALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHG--KNYWDYMNQNPGLSQR 169 (360)
Q Consensus 92 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g--~~~~~~~~~~~~~~~~ 169 (360)
+++|++|+.+.+|..+++.+ .++.+. .+..++.|.+|++++|+|. .++...+| .++|+++.++|+....
T Consensus 84 -----~~~y~~t~~s~~L~~~~~~~--~~~~~~-~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (363)
T 3dp7_A 84 -----EDRYVLAKAGWFLLNDKMAR--VNMEFN-HDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQK 154 (363)
T ss_dssp -----TTEEEECHHHHHHHHCHHHH--HHHHHH-HHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHH
T ss_pred -----CCEEecccchHHhhCCCccc--chheee-cHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHH
Confidence 48999999999988776422 233332 2356789999999999987 56667777 6899999999987663
Q ss_pred ----HHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CC
Q 018116 170 ----FNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TE 238 (360)
Q Consensus 170 ----~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ 238 (360)
|...|.... ...++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+
T Consensus 155 ~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 229 (363)
T 3dp7_A 155 SWFGFDHFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE 229 (363)
T ss_dssp HHHHHHHHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGG
T ss_pred HHHHHHHHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCccc
Confidence 556665433 223444444 35778999999999999999999999999999999888887663 36
Q ss_pred CeEEEeCCCCCC---CC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchh-hhhHhHh
Q 018116 239 NLKYIAGDMFQY---IP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQ-VTEAKLL 313 (360)
Q Consensus 239 ri~~~~~D~~~~---~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~-~~~~~~~ 313 (360)
||+++.+|++++ +| +||+|++.+++|+|+++++.++|++++++|+| ||+|+|.|.+.+....... +......
T Consensus 230 ~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~ 306 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQIS 306 (363)
T ss_dssp GEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHHHH
T ss_pred ceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHHhh
Confidence 899999999984 66 69999999999999999999999999999999 9999999998877544321 0011122
Q ss_pred hhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCC-ceeEEEEeC
Q 018116 314 GDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFG-LKSLIEVYP 360 (360)
Q Consensus 314 ~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 360 (360)
.++.++...+++.++.++|.++|+++||+++++.+..+ ..++|+++|
T Consensus 307 ~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 307 LYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred hhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 33334444567889999999999999999999997754 588999875
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=4.3e-45 Score=344.72 Aligned_cols=324 Identities=21% Similarity=0.331 Sum_probs=276.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCC
Q 018116 16 FEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK 95 (360)
Q Consensus 16 ~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 95 (360)
.+...++++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.||||+|++.|++++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~----- 83 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE----- 83 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC-----
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC-----
Confidence 3456789999999999999999999999999964 79999999999999 5799999999999999999865
Q ss_pred ccc--ceecchhhhhhhcCCCCChhhhhhhhcCcccc-chhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHH
Q 018116 96 EEE--AYGLTAISALLIKDKSYCLSPLVSGILDPENI-FPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQ 172 (360)
Q Consensus 96 ~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 172 (360)
++ .|++|+.+..|..+++.++.+++.+...+..+ ..|.+|.+.+++|. +++...+|.++|+++..+++....|.+
T Consensus 84 -~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~ 161 (374)
T 1qzz_A 84 -KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDA 161 (374)
T ss_dssp -C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred -CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHH
Confidence 46 89999999999888877888887765433345 78899999999987 678888899999999999999999999
Q ss_pred HhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeC
Q 018116 173 AMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAG 245 (360)
Q Consensus 173 ~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~ 245 (360)
.|..........+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 239 (374)
T 1qzz_A 162 LMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239 (374)
T ss_dssp TCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 998877666677888777 67789999999999999999999999999999999888877653 358999999
Q ss_pred CCCCCCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee--ecCCCCcchhhhhHhHhhhhhhhccc
Q 018116 246 DMFQYIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI--VINEKEDKHQVTEAKLLGDTLMSVSV 322 (360)
Q Consensus 246 D~~~~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~--~~~~~~~~~~~~~~~~~~d~~~~~~~ 322 (360)
|+++++| +||+|++.+++|||+++++.++|++++++|+| ||+++|.|. +.++.... .....+++.++...
T Consensus 240 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~ 312 (374)
T 1qzz_A 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFM 312 (374)
T ss_dssp CTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHHHHhC
Confidence 9988666 49999999999999999989999999999999 999999998 76543221 22345666666556
Q ss_pred CCcccCHHHHHHHHHHCCCceeEEEeeCCce-----eEEEEeC
Q 018116 323 DGKERTDEEWKTLFLDAGFTHYKITNVFGLK-----SLIEVYP 360 (360)
Q Consensus 323 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~ 360 (360)
+++.++.++|.++|+++||+++++.+.++.. ++|+++|
T Consensus 313 ~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 313 GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 7889999999999999999999999998777 8998874
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.5e-44 Score=339.26 Aligned_cols=322 Identities=23% Similarity=0.386 Sum_probs=278.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcc
Q 018116 18 GHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEE 97 (360)
Q Consensus 18 ~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 97 (360)
...++++++.|++.+++|++++++|||+.|.. ++.|++|||+++|+ +++.+.|+|++|++.|++++.+ +
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~------~ 87 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------P 87 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------T
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC------C
Confidence 35778999999999999999999999999975 79999999999999 5799999999999999999965 5
Q ss_pred cceecchhhhhhhcCCCCChhhhhhhhcCcc-ccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhh
Q 018116 98 EAYGLTAISALLIKDKSYCLSPLVSGILDPE-NIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMIS 176 (360)
Q Consensus 98 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 176 (360)
++|++|+.+..|..+++.++..++.+...+. .+..|..|.+.+++|. ++++..+|.++|+++..+|+....|...|..
T Consensus 88 g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~ 166 (360)
T 1tw3_A 88 GEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLAC 166 (360)
T ss_dssp TEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTT
T ss_pred CeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHH
Confidence 8999999999999888778888876654332 4678899999999987 5788888999999999999999999999988
Q ss_pred CcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC
Q 018116 177 DSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ 249 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~ 249 (360)
......+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++++++.+|+++
T Consensus 167 ~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 244 (360)
T 1tw3_A 167 DQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE 244 (360)
T ss_dssp TTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 77777777888887 67789999999999999999999999999999999777776653 3589999999988
Q ss_pred CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee-cCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 250 YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV-INEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 250 ~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
++| +||+|++.+++|+|+++++.++|++++++|+| ||++++.|.. .++.... .....+++.|+...+++.+
T Consensus 245 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 317 (360)
T 1tw3_A 245 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGALR 317 (360)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCCCC
T ss_pred CCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCcCC
Confidence 666 49999999999999999989999999999999 9999999988 5543222 1234566666655578899
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCc-----eeEEEEeC
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGL-----KSLIEVYP 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~ 360 (360)
+.++|.++|+++||+++++.+.++. .++|+++|
T Consensus 318 t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 318 TREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 9999999999999999999988765 78999875
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=2.9e-43 Score=327.31 Aligned_cols=316 Identities=17% Similarity=0.228 Sum_probs=270.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCccc
Q 018116 19 HGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEE 98 (360)
Q Consensus 19 ~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~ 98 (360)
..++++++.|++.+++|++++++|||+.|+. +|.|++|||+++|+ +++.+.|||++|++.|++++. ++
T Consensus 7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~-------~~ 74 (335)
T 2r3s_A 7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ-------AE 74 (335)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec-------CC
Confidence 3678999999999999999999999999986 79999999999999 579999999999999999885 58
Q ss_pred ceecchhh-hhhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhC
Q 018116 99 AYGLTAIS-ALLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISD 177 (360)
Q Consensus 99 ~y~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 177 (360)
+|++|+.+ ..|..+++.++.+++.+..++..+..|.+|+++++++. ++++ + |+++.++++....|.+.|...
T Consensus 75 ~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~ 147 (335)
T 2r3s_A 75 GYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPM 147 (335)
T ss_dssp EEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGG
T ss_pred EEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHH
Confidence 99999999 58888877788888887655456788999999999987 3433 3 888889999999999999887
Q ss_pred cchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-
Q 018116 178 SEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ- 249 (360)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~- 249 (360)
.......+++.+++.+.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.+|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 227 (335)
T 2r3s_A 148 MANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV 227 (335)
T ss_dssp GHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS
T ss_pred HhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC
Confidence 76666777888872117789999999999999999999999999999999888777664 3579999999987
Q ss_pred CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc-CCccc
Q 018116 250 YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV-DGKER 327 (360)
Q Consensus 250 ~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~ 327 (360)
+.+ +||+|++.+++|+|+++++.++|++++++|+| ||++++.|...++....+ .....+++.|+... +++.+
T Consensus 228 ~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 301 (335)
T 2r3s_A 228 DYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAY 301 (335)
T ss_dssp CCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcC
Confidence 555 49999999999999999999999999999999 999999999887654322 23355667666554 78899
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
+.++|.++++++||+.+++.+.++..++++++
T Consensus 302 t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 302 TFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred CHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 99999999999999999999998877877664
No 15
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=4.9e-43 Score=328.00 Aligned_cols=319 Identities=15% Similarity=0.205 Sum_probs=264.1
Q ss_pred CchhhhcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 10 ISVRELFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
..+...++.+.++++++.|++.+++|++++++|||++|. +|.|++|||+++|+ +++.+.||||+|++.|++++.
T Consensus 16 ~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~ 89 (352)
T 3mcz_A 16 TEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKE 89 (352)
T ss_dssp CCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEec
Confidence 455566677777999999999999999999999999996 49999999999999 568999999999999999998
Q ss_pred ccCCCCcccceecchhhh-hhhcCCCCChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHH
Q 018116 90 KVGGEKEEEAYGLTAISA-LLIKDKSYCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQ 168 (360)
Q Consensus 90 ~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (360)
+ ++|++|+.+. ++.++++.+++.++.+.. ..+..|.+|++++++|.+.+|+.. .++..+++...
T Consensus 90 ~-------~~y~~t~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~ 154 (352)
T 3mcz_A 90 G-------DAFRNTALTERYLTTTSADYIGPIVEHQY--LQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARD 154 (352)
T ss_dssp T-------TEEEECHHHHHHHSTTCTTCCHHHHHHHH--TTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHH
T ss_pred C-------CeeecCHHHHhhccCCChhhHHHHHHHhH--HHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHH
Confidence 4 7899999998 666777778887776542 357889999999999875544321 23456788888
Q ss_pred HHHHHhhhCcchhHHHHHHHhhhhcCC-CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCe
Q 018116 169 RFNQAMISDSEMAIFIVKDCCRKIFEG-LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENL 240 (360)
Q Consensus 169 ~~~~~m~~~~~~~~~~~~~~~~~~~~~-~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri 240 (360)
.|.++|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .+|+
T Consensus 155 ~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (352)
T 3mcz_A 155 AFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRV 231 (352)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCce
Confidence 999998873222 236777777 555 89999999999999999999999999999999888776653 4689
Q ss_pred EEEeCCCCCC---CC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh
Q 018116 241 KYIAGDMFQY---IP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT 316 (360)
Q Consensus 241 ~~~~~D~~~~---~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 316 (360)
+++.+|++++ .+ +||+|++.+++|||+++++.++|++++++|+| ||+|+|.|.+.++....+ .....+++
T Consensus 232 ~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~ 305 (352)
T 3mcz_A 232 EFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSL 305 (352)
T ss_dssp EEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHH
T ss_pred EEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhH
Confidence 9999999984 45 49999999999999999999999999999999 999999999988765432 23456777
Q ss_pred hhhccc-CCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 317 LMSVSV-DGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 317 ~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.|+... +++.++.++|.++|+++||++++.. .+...+++++|
T Consensus 306 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 306 HMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 776544 7889999999999999999998843 45677887765
No 16
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=5.3e-43 Score=328.61 Aligned_cols=315 Identities=19% Similarity=0.310 Sum_probs=266.9
Q ss_pred CchhhhcchHHHHHHHHH-HHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec
Q 018116 10 ISVRELFEGHGQVIRLVF-NHLSAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK 88 (360)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~ 88 (360)
+...++.++..++++++. |++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.||||+|++.|+|++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~ 96 (359)
T 1x19_A 22 MSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINL 96 (359)
T ss_dssp ECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE
T ss_pred CCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEe
Confidence 345567788889999986 8999999999999999999986 79999999999999 57999999999999999999
Q ss_pred cccCCCCcccceecchh-hhhhhcCCC---CChhhhhhhhcCccccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCC
Q 018116 89 TKVGGEKEEEAYGLTAI-SALLIKDKS---YCLSPLVSGILDPENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNP 164 (360)
Q Consensus 89 ~~~~~~~~~~~y~~t~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~ 164 (360)
.+ ++|++|+. +.+|.++++ .++++++.+. .+..++.|.+|+++++++.+ |+++.++|
T Consensus 97 ~~-------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-----------~~~~~~~p 157 (359)
T 1x19_A 97 ED-------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN-----------FKGQVPYP 157 (359)
T ss_dssp ET-------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-----------CCCSSCSS
T ss_pred eC-------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-----------CcccccCc
Confidence 74 79999996 458888776 6788877664 23467889999999998752 67777888
Q ss_pred c---HHHHHHHHhhhCcc-hhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC----
Q 018116 165 G---LSQRFNQAMISDSE-MAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---- 236 (360)
Q Consensus 165 ~---~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---- 236 (360)
+ ....|.+.|..... .....+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++
T Consensus 158 ~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 235 (359)
T 1x19_A 158 PVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE 235 (359)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHh
Confidence 8 89999999998887 66777888887 67889999999999999999999999999999999888877653
Q ss_pred ---CCCeEEEeCCCCC-CCCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhH
Q 018116 237 ---TENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKL 312 (360)
Q Consensus 237 ---~~ri~~~~~D~~~-~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~ 312 (360)
.+|++++.+|+++ +.+++|+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++.... ....
T Consensus 236 ~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~ 308 (359)
T 1x19_A 236 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENP----NFDY 308 (359)
T ss_dssp TTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCTTSC----CHHH
T ss_pred cCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCCCCc----hHHH
Confidence 4679999999988 56678999999999999999999999999999999 99999999988765221 1112
Q ss_pred hhhhhhhc-ccCCcc----cCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 313 LGDTLMSV-SVDGKE----RTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 313 ~~d~~~~~-~~~g~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.+ .++. ..+++. ++.++|.++|+++||+++++.+.+ ..++++++|
T Consensus 309 ~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 309 LS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 22 2322 234666 899999999999999999999988 788999876
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.87 E-value=3.9e-21 Score=171.45 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=123.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~~~ 261 (360)
.+++.+|||||||+|.++..+++++ |+++++++|+ +.|++.|++ ..+|+++++|+.+ +.++||+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4678999999999999999999986 6889999999 999988763 4689999999987 677899999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc---c-----------cCCccc
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV---S-----------VDGKER 327 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---~-----------~~g~~~ 327 (360)
++||+++++..++|++++++|+| ||+|++.|............ ......++.... . .--...
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999998888999999999999 99999999887664332100 000111110000 0 001235
Q ss_pred CHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 328 TDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+.+++.++|+++||+.++++.-...+..++|+|
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 889999999999999998865544444444544
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.82 E-value=2.3e-19 Score=157.40 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=126.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC-CccEEEeccccccC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAF 266 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~ 266 (360)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||+
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 4668999999999999999999999999999999 888877653 3489999999987 443 69999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh-----------h--hcccCCcccCHHHHH
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL-----------M--SVSVDGKERTDEEWK 333 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-----------~--~~~~~g~~~t~~e~~ 333 (360)
++++..++|++++++|+| ||++++.+...+......... ...+.... . ........++.+++.
T Consensus 123 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (234)
T 3dtn_A 123 EDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENLN-KTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQL 198 (234)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHHH-HHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhHH-HHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHH
Confidence 998888899999999999 999999998876543221000 00000000 0 000123456889999
Q ss_pred HHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 334 TLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
++|+++||+.+++......++++..+|
T Consensus 199 ~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 199 NWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp HHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred HHHHHcCCCceeeeeeecceeEEEEEe
Confidence 999999999999988887777776553
No 19
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.77 E-value=3.4e-18 Score=148.40 Aligned_cols=169 Identities=14% Similarity=0.198 Sum_probs=122.2
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC-CccEEE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YIP-PADAYF 258 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~p-~~D~i~ 258 (360)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|+
T Consensus 36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 111 (220)
T 3hnr_A 36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV 111 (220)
T ss_dssp HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence 4555555 457889999999999999999987 679999999 888887764 2589999999987 443 699999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh--hhcccCCcccCHHHHHHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL--MSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~g~~~t~~e~~~ll 336 (360)
+..++||+++++...+|++++++|+| ||.+++.+...................... .........++.++|.++|
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence 99999999998877899999999999 999999987665432111000000000000 0000011344889999999
Q ss_pred HHCCCceeEEEeeCCceeEEEEeC
Q 018116 337 LDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+++||+++.+. ...+.+++.+.|
T Consensus 189 ~~aGf~v~~~~-~~~~~w~~~~~~ 211 (220)
T 3hnr_A 189 ENNGFHVTFTR-LNHFVWVMEATK 211 (220)
T ss_dssp HHTTEEEEEEE-CSSSEEEEEEEE
T ss_pred HHCCCEEEEee-ccceEEEEeehh
Confidence 99999766554 446777776653
No 20
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.77 E-value=1.2e-17 Score=144.92 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=125.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p- 252 (360)
..++..++ ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..++++..+|+.+ +.+
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 44555565 6678899999999999999999997 7889999999 888887764 2589999999977 444
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
.||+|++..++||+++. ..+|++++++|+| ||.+++.+.......... .....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGP----------------PPEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSC----------------CGGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCC----------------chhcccCHHH
Confidence 59999999999999764 5789999999999 999999887665532211 0012458999
Q ss_pred HHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 332 WKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
|.++++++||+++++.........+.++|
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999999999887777776654
No 21
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.75 E-value=2.7e-18 Score=148.57 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=120.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p- 252 (360)
..+++.++ ..+. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 33444444 3334 9999999999999999998 8889999999 888887764 3589999999987 554
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhH-h-HhhhhhhhcccCCcccCH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEA-K-LLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~-~-~~~d~~~~~~~~g~~~t~ 329 (360)
.||+|++..++||+++. .++|++++++|+| ||++++.+...+...... .... . ....+..........++.
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDS-ISAEMIRKNPDWKEFNRKNISQENV 183 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHH-HHHHHHHHCTTHHHHHHHHSSHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHH-HHHHHHHhHHHHHhhhhhccccCCH
Confidence 59999999999999664 5789999999999 999999875544311110 0000 0 000000000011234578
Q ss_pred HHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 330 EEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
++|.++|+++||+.+++.......+++..+
T Consensus 184 ~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 184 ERFQNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHHHHcCCCeEEEEecCCceEEEEec
Confidence 999999999999999999887777766544
No 22
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.75 E-value=2.4e-18 Score=149.96 Aligned_cols=160 Identities=17% Similarity=0.172 Sum_probs=117.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CccEEEeccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PADAYFFKLVFH 264 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh 264 (360)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3478999999999999999999876 9999999 888887764 3789999999987 444 599999999988
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc---cC------------------
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS---VD------------------ 323 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~------------------ 323 (360)
++..++..++|++++++|+| ||++++.+...+...... ...........+... ..
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 190 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence 87877788999999999999 999999877533211100 000000000000000 00
Q ss_pred CcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 324 GKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 324 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
....+ .+|.++|+++||+.+++..+....++|+.+|
T Consensus 191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 01112 4899999999999999999988888999886
No 23
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.75 E-value=4.5e-17 Score=140.90 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=113.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCCCC--CccEEE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQYIP--PADAYF 258 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~~~p--~~D~i~ 258 (360)
.++..+. ...+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|+
T Consensus 36 ~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 36 AALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 3444443 1445679999999999999999998 679999999 888888775 3789999999987533 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccC-------CcccCHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVD-------GKERTDEE 331 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-------g~~~t~~e 331 (360)
+.+++||+++++...+|++++++|+| ||.+++.+...+...... ... ............. ....+.++
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQ-QDD-SEPEVAVRRTLQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccch-hhh-cccccceeeecCCcchhhHhhcCCCHHH
Confidence 99999999998888999999999999 999999988764322110 000 0000000000011 12459999
Q ss_pred HHHHHHHCCCceeEEEee
Q 018116 332 WKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~ 349 (360)
|.++++++||++......
T Consensus 188 ~~~~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVH 205 (218)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHCCCEEEeeecc
Confidence 999999999995444433
No 24
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.74 E-value=1.5e-17 Score=148.35 Aligned_cols=153 Identities=20% Similarity=0.305 Sum_probs=120.2
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D 255 (360)
.+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||
T Consensus 46 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 46 KILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 3344444 5677899999999999999999987 789999999 888877654 2789999999987 554 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+|++..++||+++++...+|++++++|+| ||++++.+...+...... . ....... ..+...++.++|.++
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~--~~~~~~~--~~~~~~~~~~~~~~~ 192 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---D--EFKEYVK--QRKYTLITVEEYADI 192 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---H--HHHHHHH--HHTCCCCCHHHHHHH
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---H--HHHHHHh--cCCCCCCCHHHHHHH
Confidence 99999999999888889999999999999 999999998776522111 0 1111110 112346699999999
Q ss_pred HHHCCCceeEEEee
Q 018116 336 FLDAGFTHYKITNV 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
++++||+++++...
T Consensus 193 l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 193 LTACNFKNVVSKDL 206 (266)
T ss_dssp HHHTTCEEEEEEEC
T ss_pred HHHcCCeEEEEEeC
Confidence 99999999988765
No 25
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.74 E-value=3e-17 Score=147.27 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=120.1
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p- 252 (360)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 44555555 5678899999999999999999987 689999999 888877653 4589999999987 554
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
.||+|++..++||+++. .++|++++++|+| ||++++.+.......... . ....+........+..++.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEGA---K-KEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCHH---H-HHHHHHHHHHHTCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCChh---H-HHHHHHHHhhcCccCCCCHHH
Confidence 59999999999999875 5789999999999 999999998776533221 0 011111111112356779999
Q ss_pred HHHHHHHCCCceeEEEee
Q 018116 332 WKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~ 349 (360)
|.++++++||+++++..+
T Consensus 199 ~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDI 216 (273)
T ss_dssp HHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHcCCeEEEEEEC
Confidence 999999999999988766
No 26
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.73 E-value=2.4e-17 Score=147.19 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=117.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEEEecc-ccccCC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAYFFKL-VFHAFG 267 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i~~~~-~lh~~~ 267 (360)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 345689999999999999999988 458999999 999988775 5689999999987 444 599999998 999997
Q ss_pred h-hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhh--------------------hHhHhhhhhhhccc-C--
Q 018116 268 D-EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT--------------------EAKLLGDTLMSVSV-D-- 323 (360)
Q Consensus 268 ~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~--------------------~~~~~~d~~~~~~~-~-- 323 (360)
+ ++..++|++++++|+| ||.+++.+...+......... ......++.+.... +
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 5 5677899999999999 888888654333321100000 00000011111000 1
Q ss_pred ---------CcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 324 ---------GKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 324 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.+.++.++|.++|+++||+++++...++...+++++|
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2345899999999999999999987777666776654
No 27
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.73 E-value=3.9e-17 Score=145.59 Aligned_cols=153 Identities=14% Similarity=0.262 Sum_probs=116.9
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p- 252 (360)
...+++.++ ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 345566665 56788999999999999999999865 9999999 889887764 2579999999977 554
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-hhhc-ccCCcccCH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-LMSV-SVDGKERTD 329 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~-~~~g~~~t~ 329 (360)
.||+|++..++||+++. ..+|++++++|+| ||++++.+...+..... . .+... .... ......++.
T Consensus 102 ~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~ 170 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDAF---D---VFYNYVEKERDYSHHRAWKK 170 (260)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHHH---H---HHHHHHHHHHCTTCCCCCBH
T ss_pred CCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCCCHHH---H---HHHHHHHHhcCccccCCCCH
Confidence 59999999999999876 4789999999999 99999998876553211 1 11111 1111 112355789
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
++|.++|+++||+++.+...
T Consensus 171 ~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 171 SDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEEe
Confidence 99999999999998877655
No 28
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.72 E-value=6.5e-17 Score=147.00 Aligned_cols=154 Identities=17% Similarity=0.270 Sum_probs=118.1
Q ss_pred HHHHHHhhh--hcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC
Q 018116 183 FIVKDCCRK--IFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YI 251 (360)
Q Consensus 183 ~~~~~~~~~--~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~ 251 (360)
..+++.++| .+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ ++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence 344555510 15678899999999999999999986 569999999 888887753 3689999999987 55
Q ss_pred C--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 252 P--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 252 p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
+ .||+|++..++||+++ ..++|++++++|+| ||++++.+.......... .....+.... .....+.
T Consensus 147 ~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~ 214 (297)
T 2o57_A 147 EDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRIK----LHDMGSL 214 (297)
T ss_dssp CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHHT----CSSCCCH
T ss_pred CCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHhc----CCCCCCH
Confidence 4 5999999999999988 46889999999999 999999998776543321 0111111111 1234589
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
++|.++++++||+++++..+
T Consensus 215 ~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 215 GLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHCCCeEEEEEEC
Confidence 99999999999999988765
No 29
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.72 E-value=7.4e-17 Score=145.89 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=119.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCcc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D 255 (360)
.+++.++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ .++++++.+|+.+....||
T Consensus 55 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD 131 (287)
T 1kpg_A 55 LALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVD 131 (287)
T ss_dssp HHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCS
T ss_pred HHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCee
Confidence 3445455 56778999999999999999997764 59999999 888887653 3689999999865225699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch----hh-hhHhHhhhhh-hhcccCCcccCH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH----QV-TEAKLLGDTL-MSVSVDGKERTD 329 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~----~~-~~~~~~~d~~-~~~~~~g~~~t~ 329 (360)
+|++..++||+++++..++|++++++|+| ||++++.+...+...... +. .......++. .....++..++.
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 208 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 208 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCH
Confidence 99999999999877778999999999999 999999998775422100 00 0000111111 111234567799
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
++|.++++++||+++++...
T Consensus 209 ~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 209 PMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHhCCcEEEEEEeC
Confidence 99999999999999988765
No 30
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.72 E-value=1.9e-17 Score=146.81 Aligned_cols=148 Identities=19% Similarity=0.230 Sum_probs=116.0
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Ccc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D 255 (360)
.++..++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.. +.+ .||
T Consensus 84 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 3444444 4567899999999999999999886 567999999 888887764 2689999999876 444 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+|++.+++||+++++..++|++++++|+| ||++++.+......... .+. ......++.++|.++
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccce---------ecc----cCCcccCCHHHHHHH
Confidence 99999999999988889999999999999 99999988754332111 000 012235699999999
Q ss_pred HHHCCCceeEEEeeC
Q 018116 336 FLDAGFTHYKITNVF 350 (360)
Q Consensus 336 l~~aGf~~~~~~~~~ 350 (360)
|+++||+++++....
T Consensus 225 l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 225 FNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHTCCEEEEEECT
T ss_pred HHHCCCEEEEeeecC
Confidence 999999999987663
No 31
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.71 E-value=1.8e-16 Score=139.52 Aligned_cols=141 Identities=18% Similarity=0.263 Sum_probs=111.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ---YIP--PADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh~~ 266 (360)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++||+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999988 668999999 8999888644 9999999866 444 59999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
++++...+|++++++|+| ||++++....... . .. ..+.. .........+.+++.++++++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~---~---~~---~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTS---L---YS---LINFY-IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTS---H---HH---HHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcch---h---HH---HHHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 988888999999999999 9999987654221 1 01 11111 1112235568999999999999999888
Q ss_pred EeeC
Q 018116 347 TNVF 350 (360)
Q Consensus 347 ~~~~ 350 (360)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7663
No 32
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.71 E-value=9e-17 Score=142.71 Aligned_cols=152 Identities=17% Similarity=0.139 Sum_probs=116.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p- 252 (360)
..++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 34445555 5678899999999999999999987 679999999 888887753 3689999999977 333
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++..++||+++. .++|++++++|+| ||++++.+.......... . ..... ........++.++|
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~ 170 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQAC-GVSSTSDFLTLPGL 170 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHTT-TCSCGGGSCCHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHHH-hcccccccCCHHHH
Confidence 59999999999999864 5789999999999 999999998765543321 0 10100 00111245689999
Q ss_pred HHHHHHCCCceeEEEee
Q 018116 333 KTLFLDAGFTHYKITNV 349 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~ 349 (360)
.++++++||+++++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999998887543
No 33
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.71 E-value=5e-17 Score=139.24 Aligned_cols=138 Identities=17% Similarity=0.109 Sum_probs=112.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEeccccccCChhH
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDED 270 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~ 270 (360)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 789999999999999999987 669999999 899988875 6789999999977 443 599999999999999777
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
..++|++++++|+| ||.+++.+...+..... .. .......++.++|.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGPSLEPM---------YH----PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCSSCEEE---------CC----SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCCchhhh---------hc----hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 88999999999999 99999887654431110 00 0112345689999999999999999998775
Q ss_pred C
Q 018116 351 G 351 (360)
Q Consensus 351 ~ 351 (360)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 4
No 34
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.71 E-value=2.3e-16 Score=138.78 Aligned_cols=143 Identities=18% Similarity=0.210 Sum_probs=111.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEEEecccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAYFFKLVFHA 265 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~ 265 (360)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++||
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 356789999999999999999987 679999999 888887764 5789999999987 444 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+++. ..+|++++++|+| ||.+++.+.......... .... ...........+.+++.++++++||++++
T Consensus 129 ~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKS---DGYACIAILGPTAKPREN------SYPR-LYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGGG------GGGG-GGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhhh------hhhh-hccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 9765 4789999999999 999999886543322111 1111 11111123457899999999999999999
Q ss_pred EEee
Q 018116 346 ITNV 349 (360)
Q Consensus 346 ~~~~ 349 (360)
...+
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8765
No 35
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.70 E-value=6.8e-17 Score=145.21 Aligned_cols=152 Identities=15% Similarity=0.296 Sum_probs=114.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++..+|+.+ +.+ .||+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 46788999999999999999999999999999999 888887753 3579999999977 443 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh--hhcccCCcccCHHHHHHHHHHCC
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL--MSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
+||+++.. .+|++++++|+| ||.+++.+.........+............ .....++..++..++.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 99998864 789999999999 999999886543221100000000111111 11123455567789999999999
Q ss_pred CceeEEEee
Q 018116 341 FTHYKITNV 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999888755
No 36
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.70 E-value=4.2e-17 Score=148.97 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=118.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHH-HHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIIS-EAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~ 261 (360)
+.+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999986 6788999999999 888887763 3569999999977 443 699999999
Q ss_pred ccccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchh------hhhHh-HhhhhhhhcccC---CcccCHH
Q 018116 262 VFHAFGDE-DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQ------VTEAK-LLGDTLMSVSVD---GKERTDE 330 (360)
Q Consensus 262 ~lh~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~------~~~~~-~~~d~~~~~~~~---g~~~t~~ 330 (360)
++||++++ ...++|++++++|+| ||++++.+...+....... ..... ......+..... ...++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 99999755 445799999999999 9999998876544322110 00000 000000100111 1346999
Q ss_pred HHHHHHHHCCCceeEEEeeCC-ceeEEEEeC
Q 018116 331 EWKTLFLDAGFTHYKITNVFG-LKSLIEVYP 360 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 360 (360)
++.++|+++||+++++..... ....+.++|
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999999999987633 344555543
No 37
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.70 E-value=7.3e-17 Score=141.66 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=116.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEEEe-ccccccCCh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAYFF-KLVFHAFGD 268 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i~~-~~~lh~~~~ 268 (360)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4678999999999999999999866 8999999 999888765 4679999999977 444 5999995 559999854
Q ss_pred -hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhh--------------------HhHhhhhhhhccc-CC--
Q 018116 269 -EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTE--------------------AKLLGDTLMSVSV-DG-- 324 (360)
Q Consensus 269 -~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~-~g-- 324 (360)
++..++|++++++|+| ||++++.+...++......... ......+.++... ++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 6778999999999999 8999887665543321100000 0000001111111 11
Q ss_pred ---------cccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 325 ---------KERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 325 ---------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
+.++.++|.++|+++||+++.+....+...+++++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999998777766666677777765
No 38
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.70 E-value=2.8e-16 Score=143.88 Aligned_cols=144 Identities=11% Similarity=0.119 Sum_probs=113.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
+.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 4567899999999999999999986 689999999 888887763 3589999999987 544 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++||++ ..++|++++++|+| ||++++.+.......... ........-.. ....++.++|.++++++||
T Consensus 194 ~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~s~~~~~~~l~~aGf 261 (312)
T 3vc1_A 194 STMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP--SKWVSQINAHF----ECNIHSRREYLRAMADNRL 261 (312)
T ss_dssp CGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC--CHHHHHHHHHH----TCCCCBHHHHHHHHHTTTE
T ss_pred chhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccch--hHHHHHHHhhh----cCCCCCHHHHHHHHHHCCC
Confidence 999995 56899999999999 999999998876643211 01111111111 1236689999999999999
Q ss_pred ceeEEEee
Q 018116 342 THYKITNV 349 (360)
Q Consensus 342 ~~~~~~~~ 349 (360)
+++++..+
T Consensus 262 ~~~~~~~~ 269 (312)
T 3vc1_A 262 VPHTIVDL 269 (312)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99988775
No 39
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.70 E-value=1.5e-16 Score=145.01 Aligned_cols=162 Identities=16% Similarity=0.179 Sum_probs=121.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~ 254 (360)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ .++++++.+|+.+....|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 34455555 67788999999999999999999987 89999999 888887764 348999999986553369
Q ss_pred cEEEeccccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhh-----hHhHhhhhhh-hcc
Q 018116 255 DAYFFKLVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVT-----EAKLLGDTLM-SVS 321 (360)
Q Consensus 255 D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~d~~~-~~~ 321 (360)
|+|++..++||+++ +....+|++++++|+| ||++++.+...+......... ......++.. ...
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 99999999999954 5667899999999999 999999988776532110000 0000011111 122
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.++..++.+++.++++++||+++++....
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 35677899999999999999999887764
No 40
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.69 E-value=3e-16 Score=138.13 Aligned_cols=153 Identities=18% Similarity=0.264 Sum_probs=115.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--P 253 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~ 253 (360)
.++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .
T Consensus 12 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 12 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred hHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 3444455 67889999999999999999998864 8999999 888887764 2689999999976 444 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++..++||+++. .++|++++++|+| ||++++.+...+..... ......... .........++.++|.
T Consensus 88 fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPVL---DEFVNHLNR-LRDPSHVRESSLSEWQ 158 (239)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHHH---HHHHHHHHH-HHCTTCCCCCBHHHHH
T ss_pred EEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCChhH---HHHHHHHHH-hccccccCCCCHHHHH
Confidence 9999999999999875 5789999999999 99999998876553211 111111110 0011123557899999
Q ss_pred HHHHHCCCceeEEEee
Q 018116 334 TLFLDAGFTHYKITNV 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
++|+++||+++++...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998877654
No 41
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.69 E-value=2.2e-16 Score=144.98 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=120.0
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCcc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D 255 (360)
.+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+....||
T Consensus 81 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD 157 (318)
T 2fk8_A 81 LNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD 157 (318)
T ss_dssp HHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred HHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcC
Confidence 3444444 5677899999999999999999987 679999999 888887763 3679999999865324699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch----hhh-hHhHhhhhhh-hcccCCcccCH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH----QVT-EAKLLGDTLM-SVSVDGKERTD 329 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~----~~~-~~~~~~d~~~-~~~~~g~~~t~ 329 (360)
+|++..++||+++++..++|++++++|+| ||++++.+...+...... +.. ......++.. ....++..++.
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 234 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCH
Confidence 99999999999887788999999999999 999999998875522100 000 0000111111 11234567799
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
+++.++++++||+++++...
T Consensus 235 ~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHhCCCEEEEEEec
Confidence 99999999999999887665
No 42
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.69 E-value=2.8e-16 Score=139.61 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=112.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
..+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 456789999999999999999999876 9999999 888887653 4679999999976 444 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++||++ ..++|++++++|+| ||++++.+........... ........ .....+.++|.++++++||
T Consensus 123 ~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~l~~aGf 188 (257)
T 3f4k_A 123 AIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTSERPAE------IEDFWMDA--YPEISVIPTCIDKMERAGY 188 (257)
T ss_dssp CSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCHH------HHHHHHHH--CTTCCBHHHHHHHHHHTTE
T ss_pred hHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChHH------HHHHHHHh--CCCCCCHHHHHHHHHHCCC
Confidence 999994 35789999999999 9999999987554433210 11111111 1235689999999999999
Q ss_pred ceeEEEeeC
Q 018116 342 THYKITNVF 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
+++++...+
T Consensus 189 ~~v~~~~~~ 197 (257)
T 3f4k_A 189 TPTAHFILP 197 (257)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 999987764
No 43
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.69 E-value=5.2e-16 Score=139.33 Aligned_cols=140 Identities=17% Similarity=0.245 Sum_probs=110.4
Q ss_pred CCCEEEEeCCCC---chHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC------------C--C
Q 018116 195 GLGSIVDVGGGN---GGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQY------------I--P 252 (360)
Q Consensus 195 ~~~~iLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~------------~--p 252 (360)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++|+.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 458999999999 999888888899999999999 999987764 47899999999752 2 3
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++..+|||+++++..++|++++++|+| ||+|++.+...+. ... . ....+...........++.+++
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~--~~~-~---~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG--LPA-Q---QKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS--CHH-H---HHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc--hHH-H---HHHHHHHHhcCCCCccCCHHHH
Confidence 69999999999999998888999999999999 9999999987532 111 1 1122222211123567899999
Q ss_pred HHHHHHCCCceeE
Q 018116 333 KTLFLDAGFTHYK 345 (360)
Q Consensus 333 ~~ll~~aGf~~~~ 345 (360)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5997665
No 44
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.69 E-value=1.4e-16 Score=139.69 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=108.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 45999999999999999876 5789999999 888887764 2569999999988333 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+++++..++|++++++|+| ||++++.+.........+ ...++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEE
Confidence 9988888999999999999 999998776543321110 1225899999999999999999
Q ss_pred EEeeCC
Q 018116 346 ITNVFG 351 (360)
Q Consensus 346 ~~~~~~ 351 (360)
+...+.
T Consensus 204 ~~~~~~ 209 (235)
T 3lcc_A 204 VEENPH 209 (235)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 887743
No 45
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.68 E-value=3.7e-16 Score=147.17 Aligned_cols=145 Identities=16% Similarity=0.256 Sum_probs=113.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCCC--------------CCeEEEeCCCCC-------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQT--------------ENLKYIAGDMFQ------- 249 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~ri~~~~~D~~~------- 249 (360)
..++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++|+.+|+.+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 3467899999999999999999987 7899999999 8888877641 699999999976
Q ss_pred CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 250 YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 250 ~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
+++ .||+|++..++|++++. .++|++++++|+| ||+|++.+.......... ............+...
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 229 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSEA------AQQDPILYGECLGGAL 229 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCHH------HHHCHHHHHTTCTTCC
T ss_pred CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCHh------HhhhHHHhhcccccCC
Confidence 343 59999999999999875 5889999999999 999999998776543321 1111111212234567
Q ss_pred CHHHHHHHHHHCCCceeEEEe
Q 018116 328 TDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~ 348 (360)
+.++|.++|+++||+.+++..
T Consensus 230 ~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 230 YLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp BHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 889999999999999876644
No 46
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.68 E-value=1.9e-16 Score=144.16 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=117.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C----CCeEEEeCCCCC-CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----T----ENLKYIAGDMFQ-YI 251 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~----~ri~~~~~D~~~-~~ 251 (360)
..+++.++ ....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +.
T Consensus 73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 34444444 33459999999999999999987 679999999 899988764 1 789999999987 44
Q ss_pred C-CccEEEe-ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch-----hhh-hHhHhhhhhh-----
Q 018116 252 P-PADAYFF-KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH-----QVT-EAKLLGDTLM----- 318 (360)
Q Consensus 252 p-~~D~i~~-~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-----~~~-~~~~~~d~~~----- 318 (360)
+ .||+|++ ..++|++++++..++|++++++|+| ||+|++.....+...... .+. .....+.+..
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 4 5998886 4778888888889999999999999 899888776544210000 000 0000000000
Q ss_pred -----hc-c-------------cCCcccCHHHHHHHHHHCCCceeEEEeeCC------ceeEEEEe
Q 018116 319 -----SV-S-------------VDGKERTDEEWKTLFLDAGFTHYKITNVFG------LKSLIEVY 359 (360)
Q Consensus 319 -----~~-~-------------~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~ 359 (360)
.. . ...+.++.++|.++|+++||+++++.++.. ...++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 00 0 011245999999999999999999998852 23466654
No 47
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.68 E-value=3.2e-16 Score=140.17 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=113.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~ 261 (360)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 456789999999999999999988 8889999999 888887764 3789999999977 444 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++||++ ..++|++++++|+| ||++++.+.......... . ..+.... ......+.+++.++++++||
T Consensus 123 ~~~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf 188 (267)
T 3kkz_A 123 AIYNIG---FERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWMD--AYPEIDTIPNQVAKIHKAGY 188 (267)
T ss_dssp CGGGTC---HHHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCEEHHHHHHHHHHTTE
T ss_pred CceecC---HHHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence 999993 35789999999999 999999998765443321 1 1111111 01245689999999999999
Q ss_pred ceeEEEeeC
Q 018116 342 THYKITNVF 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
+++++..++
T Consensus 189 ~~v~~~~~~ 197 (267)
T 3kkz_A 189 LPVATFILP 197 (267)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999988765
No 48
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.68 E-value=1.6e-16 Score=132.08 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=116.4
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCC--CCccEEEecc
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYI--PPADAYFFKL 261 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~--p~~D~i~~~~ 261 (360)
++.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++ .+++++..+| .+. ..||+|++..
T Consensus 10 ~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 10 LPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp HHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 34444 66788999999999999999999873 9999999 888888765 6789999999 333 3699999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
++||+++. ..+|++++++|+| ||++++.+.........+ . ....++.++|.++++ ||
T Consensus 84 ~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~-------------~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 84 SFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIGP---P-------------LSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp CSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSS---C-------------GGGCCCHHHHHHHTT--TE
T ss_pred chhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccCc---h-------------HhhhcCHHHHHHHHh--Cc
Confidence 99999764 5789999999999 999999987765433221 0 012358999999999 99
Q ss_pred ceeEEEeeCCceeEEEEe
Q 018116 342 THYKITNVFGLKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~~~~~~vi~~~ 359 (360)
+++++.........+.+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEEEECSSTTEEEEEEE
T ss_pred EEEEccCCCCceEEEEEe
Confidence 999999998776666554
No 49
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.68 E-value=2e-15 Score=141.55 Aligned_cols=215 Identities=11% Similarity=-0.006 Sum_probs=139.0
Q ss_pred CcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh-hhhcCCCCChhhh
Q 018116 42 GIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA-LLIKDKSYCLSPL 120 (360)
Q Consensus 42 ~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~ 120 (360)
++|..| . +|.|++|||+.+|+ +++.+++||+.|.+.|+++.. ++ |++|+.+. ++.........+.
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~-------~~-~~lt~~~~~~l~~~~~~~~~~~ 112 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE-------DG-VKLTEKGEELVAEYGIGKRYDF 112 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS-------SS-SEECHHHHHHHHHHTCCCCCC-
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC-------CC-EEECHHHHHHHHhcCccccccc
Confidence 789888 5 69999999999999 579999999999999999885 34 99999876 4444221111111
Q ss_pred hhhh-cC-c----cccchhhhHHHhhhcCCCchhHHhhCCChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcC
Q 018116 121 VSGI-LD-P----ENIFPLHFISKWFKGNDISVWETVHGKNYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFE 194 (360)
Q Consensus 121 ~~~~-~~-~----~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 194 (360)
+... .+ . .+...|..+.+.++... .+. ..|+.....++. .. ..++........
T Consensus 113 ~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~-~~~------~~~~~~~~~~~~--~~------------~~~l~~~~~~~~ 171 (373)
T 2qm3_A 113 TCPHCQGKTVDLQAFADLLEQFREIVKDRP-EPL------HEFDQAYVTPET--TV------------ARVILMHTRGDL 171 (373)
T ss_dssp -----------CGGGHHHHHHHHHHHTTCC-CCC------GGGTCCCBCHHH--HH------------HHHHHHHHTTCS
T ss_pred cchhhcCCCcchhhhHHHHHHHHHHHhcCC-ccc------hhcCCeecCHHH--HH------------HHHHHHhhcCCC
Confidence 1000 00 0 01112334444444332 110 011110001110 00 011100110023
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-----CccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-----PADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-----~~D~i~~~~~ 262 (360)
++.+||||| |+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|+.+..| .||+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 568999999 99999999999988889999999 999988764 2389999999987432 5999999876
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
++.. ....+|+++.++|+| ||++++++...
T Consensus 251 ~~~~---~~~~~l~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 251 ETLE---AIRAFVGRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp SSHH---HHHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred CchH---HHHHHHHHHHHHccc---CCeEEEEEEec
Confidence 6543 247899999999999 99876666543
No 50
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.67 E-value=2e-16 Score=135.73 Aligned_cols=134 Identities=10% Similarity=0.053 Sum_probs=105.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCC-CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------------------TENLKYIAGDMFQ-YI- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~ri~~~~~D~~~-~~- 251 (360)
..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..+++++++|+.+ +.
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999997 679999999 999887753 2589999999987 43
Q ss_pred --CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCH
Q 018116 252 --PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTD 329 (360)
Q Consensus 252 --p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~ 329 (360)
..||+|++..++|++++++..+++++++++|+| ||+++++....+..... ......+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 359999999999999988888899999999999 99865554433211000 00112488
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
+++.+++++ ||+++.+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998777655
No 51
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.67 E-value=1.6e-16 Score=139.89 Aligned_cols=138 Identities=15% Similarity=0.232 Sum_probs=111.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC--CccEEEeccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP--PADAYFFKLVFH 264 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh 264 (360)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.. +.+ .||+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998876 569999999 888887764 2368999999866 333 499999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
|+++++..++|++++++|+| ||++++.+...... . .++. ......++.++|.++|+++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~--~--------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEG--V--------ILDD----VDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSS--E--------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCc--c--------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence 99998888999999999999 99999999876541 1 0000 012234589999999999999999
Q ss_pred EEEeeC
Q 018116 345 KITNVF 350 (360)
Q Consensus 345 ~~~~~~ 350 (360)
++....
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 987663
No 52
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.67 E-value=6.4e-16 Score=133.97 Aligned_cols=144 Identities=11% Similarity=0.039 Sum_probs=104.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCeEEEeCCCCC-CC--CCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------T----ENLKYIAGDMFQ-YI--PPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~ri~~~~~D~~~-~~--p~~D~i 257 (360)
..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . .+++++.+|+.. +. ..||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 35678999999999999999999988899999999 888887764 1 289999999965 33 269999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH----
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK---- 333 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~---- 333 (360)
++..++||+++++..++|++++++|+| ||.+++.. ......... ...............++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTP-NKEYNFHYG------NLFEGNLRHRDHRFEWTRKEFQTWAV 176 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEE-BGGGGGCCC------CT-----GGGCCTTSBCHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEcc-chhhhhhhc------ccCcccccccCceeeecHHHHHHHHH
Confidence 999999999998888999999999999 88544433 221110000 0000000001112345888888
Q ss_pred HHHHHCCCceeEE
Q 018116 334 TLFLDAGFTHYKI 346 (360)
Q Consensus 334 ~ll~~aGf~~~~~ 346 (360)
++++++||++...
T Consensus 177 ~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 177 KVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHTEEEEEE
T ss_pred HHHHHCCcEEEEE
Confidence 8899999965443
No 53
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.67 E-value=3.2e-16 Score=135.13 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=109.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC-CccEEEeccccccCChh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP-PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~~~~ 269 (360)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.. +.+ .||+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999987 679999999 8888888754478888999876 422 59999999999999988
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC-CceeEEEe
Q 018116 270 DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG-FTHYKITN 348 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG-f~~~~~~~ 348 (360)
+...+|++++++|+| ||++++........... ... .....++.++|.++|+++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRD--------KLA------RYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC--------TTS------CEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc--------ccc------hhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 889999999999999 89988875433221111 000 0113469999999999999 99998876
Q ss_pred e
Q 018116 349 V 349 (360)
Q Consensus 349 ~ 349 (360)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 5
No 54
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.66 E-value=9.2e-16 Score=134.08 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=110.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCC-CCC--CccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQ-YIP--PADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~-~~p--~~D~i 257 (360)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.. +.+ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 356789999999999999999988 679999999 888776653 2368999999977 443 59999
Q ss_pred EeccccccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc--------------
Q 018116 258 FFKLVFHAFGDE-DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV-------------- 322 (360)
Q Consensus 258 ~~~~~lh~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-------------- 322 (360)
++..++||+++. ...++|++++++|+| ||++++.+......... . .......+......
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcc
Confidence 999999999764 466899999999999 99999998766443221 1 11111111110000
Q ss_pred -CCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 323 -DGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 323 -~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....++.++|.++|+++||+++++...
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 013569999999999999999888644
No 55
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.66 E-value=9.5e-16 Score=135.12 Aligned_cols=144 Identities=14% Similarity=0.184 Sum_probs=107.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCCCC--CccEEEeccccccCCh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQYIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~~~~ 268 (360)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567899999999999999998865 7999999 888887764 2289999999876433 5999999999999987
Q ss_pred hHHHHHHHHHH-HhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhh---------hhcccCCcccCHHHHHHHHHH
Q 018116 269 EDCLKILKKCR-EAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTL---------MSVSVDGKERTDEEWKTLFLD 338 (360)
Q Consensus 269 ~~~~~~L~~~~-~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---------~~~~~~g~~~t~~e~~~ll~~ 338 (360)
. .++|++++ ++|+| ||++++.++....... ......... .........++.+++.++|++
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLVCPNANAVSR-----QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCHHH-----HHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEEcCChHHHHH-----HHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 6 57899999 99999 9999998754332100 000000000 000112346799999999999
Q ss_pred CCCceeEEEee
Q 018116 339 AGFTHYKITNV 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
+||+++++...
T Consensus 189 ~Gf~~~~~~~~ 199 (250)
T 2p7i_A 189 AGLQVTYRSGI 199 (250)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEeee
Confidence 99999988654
No 56
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.66 E-value=1.1e-15 Score=137.75 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=114.0
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEE
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAY 257 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i 257 (360)
...+++.+. ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..++++..+|+.. +.+ .||+|
T Consensus 46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 121 (279)
T 3ccf_A 46 GEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAV 121 (279)
T ss_dssp CCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEE
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEE
Confidence 345556565 56778999999999999999998 7889999999 888887764 4789999999977 444 59999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh-h------cccCCcccCHH
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM-S------VSVDGKERTDE 330 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~------~~~~g~~~t~~ 330 (360)
++..++||+++. .++|++++++|+| ||++++......... . . ......... . .......++.+
T Consensus 122 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (279)
T 3ccf_A 122 FSNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFGGKGNIK-Y--I--LEALYNALETLGIHNPQALNPWYFPSIG 191 (279)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECTTTTH-H--H--HHHHHHHHHHHTCCCGGGGCCCCCCCHH
T ss_pred EEcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEecCCcchH-H--H--HHHHHHHHHhcCCccccCcCceeCCCHH
Confidence 999999999875 4789999999999 999988765432211 0 0 011111100 0 00112345899
Q ss_pred HHHHHHHHCCCceeEEEee
Q 018116 331 EWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~ 349 (360)
+|.++|+++||+++++...
T Consensus 192 ~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 192 EYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHcCCEEEEEEEe
Confidence 9999999999998877654
No 57
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.66 E-value=4.5e-16 Score=134.78 Aligned_cols=143 Identities=13% Similarity=0.027 Sum_probs=103.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-------CCeEEEeCCCCC-CC--CCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T-------ENLKYIAGDMFQ-YI--PPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-------~ri~~~~~D~~~-~~--p~~D~i 257 (360)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ . .+++++.+|+.. +. ..||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 45678999999999999999999988899999999 888887753 1 289999999865 33 269999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH----
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK---- 333 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~---- 333 (360)
++..++||+++++..++|++++++|+| ||.+++........ ..................++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPNIEYNV-------KFANLPAGKLRHKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBHHHHH-------HTC-----------CCSCBCHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccCcccch-------hhcccccccccccccccccCHHHHHHHHH
Confidence 999999999998888999999999999 88555543311000 0000000000001112345888888
Q ss_pred HHHHHCCCceeE
Q 018116 334 TLFLDAGFTHYK 345 (360)
Q Consensus 334 ~ll~~aGf~~~~ 345 (360)
++++++||++..
T Consensus 177 ~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 177 KITERFAYNVQF 188 (217)
T ss_dssp HHHHHSSEEEEE
T ss_pred HHHHHcCceEEE
Confidence 899999997644
No 58
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.65 E-value=5.1e-16 Score=137.69 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=107.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEEEecccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAYFFKLVFHA 265 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~ 265 (360)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.. +.+ .||+|++..++||
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhh
Confidence 346789999999999999999998554 9999999 888887764 5789999999976 443 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC------------CCcchhhhhHhHhhhhhhh----c--ccCCccc
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE------------KEDKHQVTEAKLLGDTLMS----V--SVDGKER 327 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~------------~~~~~~~~~~~~~~d~~~~----~--~~~g~~~ 327 (360)
+++. .++|++++++|+| ||++++....... ....... .....++-... . ......+
T Consensus 121 ~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (253)
T 3g5l_A 121 IASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHW-PVDRYFNESMRTSHFLGEDVQKYHR 194 (253)
T ss_dssp CSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEE-EECCTTCCCEEEEEETTEEEEEECC
T ss_pred hhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEE-EeccccccceEEEeeccccCccEec
Confidence 9664 6889999999999 9999886543210 0000000 00000000000 0 0011234
Q ss_pred CHHHHHHHHHHCCCceeEEEee
Q 018116 328 TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
|.++|.++|+++||+++++...
T Consensus 195 t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 195 TVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp CHHHHHHHHHHTTEEEEEEECC
T ss_pred CHHHHHHHHHHcCCeeeeeecC
Confidence 9999999999999999998755
No 59
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.65 E-value=9.8e-16 Score=138.38 Aligned_cols=151 Identities=15% Similarity=0.203 Sum_probs=110.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~~l 263 (360)
..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 45778999999999999999999998 489999999 888876653 3489999999987 444 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec-----C---CCCcchhhhhHhHhhhhhhh--cccCCcccCHHHHH
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI-----N---EKEDKHQVTEAKLLGDTLMS--VSVDGKERTDEEWK 333 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~-----~---~~~~~~~~~~~~~~~d~~~~--~~~~g~~~t~~e~~ 333 (360)
||+++. .++|++++++|+| ||.+++.++.. . .............+..+... ...+....+..++.
T Consensus 100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCH--HHHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 999876 4789999999999 99999988761 1 11110000000111111110 01233345667899
Q ss_pred HHHHHCCCceeEEEe
Q 018116 334 TLFLDAGFTHYKITN 348 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~ 348 (360)
++|+++||+.+++..
T Consensus 175 ~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 175 IYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHcCCCeEEEEE
Confidence 999999999887743
No 60
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.65 E-value=2.3e-15 Score=134.21 Aligned_cols=151 Identities=14% Similarity=0.168 Sum_probs=113.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYF 258 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~ 258 (360)
..+++.++ ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.++...+++|+.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 34445554 56789999999999999999997 6889999999 9999999876699999999977 544 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHH
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLD 338 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~ 338 (360)
+.+++||+++. .++|++++++|+ ||++++.+...+...... ......... .......++.+++. +|++
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIRLAQRIW---LYDYFPFLW--EDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGGGCCCCG---GGGTCHHHH--HHHHTSCCHHHHHH-HHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCchhHHHH---HHHHHHHHh--hhhhhhCCCHHHHH-HHHH
Confidence 99999999764 578999999998 499999887654332211 000000000 01113345778888 9999
Q ss_pred CCCceeEEEee
Q 018116 339 AGFTHYKITNV 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
+||+.+++...
T Consensus 168 aGF~~v~~~~~ 178 (261)
T 3ege_A 168 NTKRRVEAIPF 178 (261)
T ss_dssp HHCSEEEEEEC
T ss_pred cCCCceeEEEe
Confidence 99998888665
No 61
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.65 E-value=3.4e-15 Score=131.29 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=108.7
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC--CccEE
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP--PADAY 257 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p--~~D~i 257 (360)
+...++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|
T Consensus 35 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 35 LRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHSC--CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 444444 4567899999999999999999872 239999999 888887754 3579999999976 443 59999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch-hh--h-------hHhHhhh-----hhhhc-c
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH-QV--T-------EAKLLGD-----TLMSV-S 321 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~--~-------~~~~~~d-----~~~~~-~ 321 (360)
++..++||+++. .++|++++++|+| ||++++............ .. . .....+. ..... .
T Consensus 112 ~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
T 3bkw_A 112 YSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186 (243)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred EEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence 999999999764 5889999999999 999998764321000000 00 0 0000000 00000 0
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.....++.++|.++|+++||+++++...
T Consensus 187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 1122358999999999999999988764
No 62
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.64 E-value=1e-15 Score=136.09 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=109.8
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC-CccEEEec
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP-PADAYFFK 260 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p-~~D~i~~~ 260 (360)
++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 25 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 102 (259)
T 2p35_A 25 LLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYAN 102 (259)
T ss_dssp HHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEe
Confidence 444444 45678999999999999999999999999999999 899888765 5789999999977 422 59999999
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc----ccCCcccCHHHHHHHH
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV----SVDGKERTDEEWKTLF 336 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~----~~~g~~~t~~e~~~ll 336 (360)
.++||+++. .++|++++++|+| ||++++......................+.... .......+.++|.++|
T Consensus 103 ~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (259)
T 2p35_A 103 AVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNAL 177 (259)
T ss_dssp SCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHH
T ss_pred CchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHH
Confidence 999999764 5789999999999 999998875432211100000000000000000 0123456899999999
Q ss_pred HHCCCcee
Q 018116 337 LDAGFTHY 344 (360)
Q Consensus 337 ~~aGf~~~ 344 (360)
+++||.+.
T Consensus 178 ~~aGf~v~ 185 (259)
T 2p35_A 178 SPKSSRVD 185 (259)
T ss_dssp GGGEEEEE
T ss_pred HhcCCceE
Confidence 99999743
No 63
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.63 E-value=3.1e-15 Score=127.35 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=110.9
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-Cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p-~~ 254 (360)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .|
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 3444444 446679999999999999999987 679999999 888887764 2479999999876 334 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++||+++++..++|++++++|+| ||.+++++.........+ ......++.+++.+
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRR 160 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHH
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHH
Confidence 999999999999988888999999999999 999998887655432110 01123458899999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+|++ |++++....
T Consensus 161 ~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 161 YYEG--WERVKYNED 173 (199)
T ss_dssp HTTT--SEEEEEECC
T ss_pred HhcC--CeEEEeccc
Confidence 9987 988877543
No 64
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.63 E-value=2.7e-15 Score=132.03 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=81.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecc-cccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKL-VFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~-~lh~ 265 (360)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 6789999999999999999988 568999999 888887764 2389999999976 444 699999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 266 FG-DEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 266 ~~-~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
++ +++..++|++++++|+| ||.+++.
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~ 141 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFD 141 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 94 36778999999999999 8888763
No 65
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.62 E-value=2.1e-16 Score=143.33 Aligned_cols=146 Identities=15% Similarity=0.240 Sum_probs=105.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCC-----------------------------------
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQT----------------------------------- 237 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 237 (360)
.+..+|||||||+|.++..+++.++..+++++|+ +.+++.|++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 4678999999999999999999999999999999 8888766420
Q ss_pred -----------------------------CCeEEEeCCCCCCC--------CCccEEEeccccccC----ChhHHHHHHH
Q 018116 238 -----------------------------ENLKYIAGDMFQYI--------PPADAYFFKLVFHAF----GDEDCLKILK 276 (360)
Q Consensus 238 -----------------------------~ri~~~~~D~~~~~--------p~~D~i~~~~~lh~~----~~~~~~~~L~ 276 (360)
.+|+|..+|+.... +.||+|++..+++|+ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998622 259999999999776 6778889999
Q ss_pred HHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHH--CCCceeEEEee
Q 018116 277 KCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLD--AGFTHYKITNV 349 (360)
Q Consensus 277 ~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~--aGf~~~~~~~~ 349 (360)
+++++|+| ||+|++....... +......... ...........++++.++|.+ +||+.+++...
T Consensus 205 ~~~~~Lkp---GG~lil~~~~~~~------y~~~~~~~~~-~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRP---GGILVLEPQPWSS------YGKRKTLTET-IYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEE---EEEEEEECCCHHH------HHTTTTSCHH-HHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCC---CcEEEEecCCchh------hhhhhcccHH-HHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999 8888774321110 0000000000 000001123357899999999 99988887655
No 66
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.62 E-value=4.4e-15 Score=133.24 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=114.0
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hH------HHhcCCC-------CCCeEEEeCC-
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PH------AVANMPQ-------TENLKYIAGD- 246 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~-------~~ri~~~~~D- 246 (360)
..+++.++ ..+..+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ .++++++.+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34555555 6778899999999999999999996 7789999999 54 6666543 2689999998
Q ss_pred CCC---CCC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhH-hHhhhhhh--
Q 018116 247 MFQ---YIP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEA-KLLGDTLM-- 318 (360)
Q Consensus 247 ~~~---~~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~d~~~-- 318 (360)
+.. +++ .||+|++..++||+++.+ .+++.++++++| ||++++.+...+...... .... .......+
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 184 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYA 184 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhh
Confidence 433 223 599999999999999875 377777787888 999999998876543221 1110 00100000
Q ss_pred hc---cc-CCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 319 SV---SV-DGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 319 ~~---~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.. .. ....++.+++.++++++||+++++..+
T Consensus 185 ~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 185 IAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00 01 113569999999999999999888766
No 67
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.62 E-value=1.5e-15 Score=137.16 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=109.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CC--CccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y-IP--PADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~-~p--~~D~i~~~~~ 262 (360)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ + .+ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999988 779999999 888887764 2789999999977 3 23 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc--------ccCCcccCHHHHHH
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV--------SVDGKERTDEEWKT 334 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~g~~~t~~e~~~ 334 (360)
+||+++. .++|++++++|+| ||.+++.+.......... .....+...... ......++.+++.+
T Consensus 146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL 217 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence 9999876 5789999999999 999998876543211000 000000000000 01124568999999
Q ss_pred HHHHCCCceeEEEeeCC
Q 018116 335 LFLDAGFTHYKITNVFG 351 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~ 351 (360)
+|+++||+++++..+..
T Consensus 218 ~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 218 WLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp HHHHTTCEEEEEEEESS
T ss_pred HHHHCCCceeeeeeEEE
Confidence 99999999999887743
No 68
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=2.4e-15 Score=132.61 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=109.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC-------CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP-------PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p-------~~D~i~~~ 260 (360)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 35678999999999999999999977 8999999 888887754 4589999999987 221 38999999
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhH--h--HhhhhhhhcccCCcccCHHHHHHHH
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEA--K--LLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~--~--~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
.++||+++++..++|++++++|+| ||++++.+...+........... . ......+........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999988889999999999999 99999999865431100000000 0 0000001000111236899999999
Q ss_pred HHCCCceeEEEee
Q 018116 337 LDAGFTHYKITNV 349 (360)
Q Consensus 337 ~~aGf~~~~~~~~ 349 (360)
+||++++...+
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99998876544
No 69
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.61 E-value=2.9e-14 Score=120.61 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=105.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEec-cccccCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFK-LVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~-~~lh~~~ 267 (360)
.+..+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. .++|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 56789999999999999999987 679999999 888887765 5679999999987 444 59999998 8999998
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEE
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+++..++|++++++|+| ||.+++.... ...++.+++.++++++||+++++.
T Consensus 123 ~~~~~~~l~~~~~~l~~---~G~l~~~~~~--------------------------~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 123 EDGREPALANIHRALGA---DGRAVIGFGA--------------------------GRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEEEET--------------------------TSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCC---CCEEEEEeCC--------------------------CCCcCHHHHHHHHHHcCCEEeeee
Confidence 88888999999999999 8988875421 112478999999999999998886
Q ss_pred ee
Q 018116 348 NV 349 (360)
Q Consensus 348 ~~ 349 (360)
..
T Consensus 174 ~~ 175 (195)
T 3cgg_A 174 ES 175 (195)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 70
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.61 E-value=6.8e-15 Score=129.33 Aligned_cols=96 Identities=20% Similarity=0.337 Sum_probs=80.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecc-cc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKL-VF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~-~l 263 (360)
+.+..+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 345689999999999999998876 79999999 888887764 3679999999876 444 599999986 99
Q ss_pred ccC-ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 264 HAF-GDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 264 h~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
||+ +.++..++|++++++|+| ||.+++.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~ 136 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTD---GGKLLFD 136 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCC---CeEEEEE
Confidence 998 556778999999999999 8888763
No 71
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.61 E-value=1.2e-15 Score=132.50 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=110.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-----CC-C-cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-----IP-P-AD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-----~p-~-~D 255 (360)
.++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+... .+ . ||
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3455554 456699999999999999999987 679999999 99998887767888888887541 12 3 99
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc------cCCcccCH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS------VDGKERTD 329 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~------~~g~~~t~ 329 (360)
+|++.+++| .++. .++|++++++|+| ||++++.+.......... +.. .+........ .....++.
T Consensus 119 ~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3e8s_A 119 LICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-YQD--GWREESFAGFAGDWQPMPWYFRTL 189 (227)
T ss_dssp EEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-CSC--EEEEECCTTSSSCCCCEEEEECCH
T ss_pred EEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-ccc--ccchhhhhccccCcccceEEEecH
Confidence 999999999 5543 5789999999999 999999887654332110 000 0000000000 01134599
Q ss_pred HHHHHHHHHCCCceeEEEee
Q 018116 330 EEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
++|.++|+++||+++++...
T Consensus 190 ~~~~~~l~~aGf~~~~~~~~ 209 (227)
T 3e8s_A 190 ASWLNALDMAGLRLVSLQEP 209 (227)
T ss_dssp HHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHcCCeEEEEecC
Confidence 99999999999999998763
No 72
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.60 E-value=3e-14 Score=123.54 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=102.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDED 270 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~ 270 (360)
+..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+ .||+|++.+++||+++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 118 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 118 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence 3789999999999999888754 99999 8888887644 79999999876 443 59999999999999765
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh--cccCCcccCHHHHHHHHHHCCCceeEEEe
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS--VSVDGKERTDEEWKTLFLDAGFTHYKITN 348 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
.++|++++++|+| ||.+++.+...... ... ........ .......++.++|.++|+++||+++++..
T Consensus 119 -~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 119 -ERALKEAYRILKK---GGYLIVGIVDRESF-----LGR--EYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp -HHHHHHHHHHEEE---EEEEEEEEECSSSH-----HHH--HHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -HHHHHHHHHHcCC---CcEEEEEEeCCccH-----HHH--HHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 5789999999999 99999877643221 000 11111000 01123456999999999999999988866
Q ss_pred e
Q 018116 349 V 349 (360)
Q Consensus 349 ~ 349 (360)
.
T Consensus 188 ~ 188 (219)
T 1vlm_A 188 T 188 (219)
T ss_dssp E
T ss_pred c
Confidence 5
No 73
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.59 E-value=8.3e-15 Score=129.75 Aligned_cols=133 Identities=10% Similarity=0.002 Sum_probs=105.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------------------TENLKYIAGDMFQ 249 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~ri~~~~~D~~~ 249 (360)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++|+++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999987 679999999 888886632 2589999999988
Q ss_pred -CC---CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc
Q 018116 250 -YI---PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK 325 (360)
Q Consensus 250 -~~---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~ 325 (360)
+. ..||+|++..++|++++++..+++++++++|+| ||+++++....+..... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 33 369999999999999988888999999999999 99997766553321100 0011
Q ss_pred ccCHHHHHHHHHHCCCceeEEEee
Q 018116 326 ERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..+.+++.++|++ +|+++.....
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2589999999987 5988776544
No 74
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.58 E-value=1.9e-14 Score=125.10 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=105.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCC--CccEEEeccccccCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ---YIP--PADAYFFKLVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh~~~ 267 (360)
.+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++. ..++..+|+.+ +.+ .||+|++.+++||++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 46789999999999999999988 4 89999999 8888887642 24788999865 233 599999999999998
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhh------hcccCCcccCHHHHHHHHHHCCC
Q 018116 268 DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLM------SVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~------~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+. .++|++++++|+| ||.+++..+....... . ......... ........++.++|.++++++||
T Consensus 108 ~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 177 (230)
T 3cc8_A 108 DP--WAVIEKVKPYIKQ---NGVILASIPNVSHISV---L--APLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY 177 (230)
T ss_dssp CH--HHHHHHTGGGEEE---EEEEEEEEECTTSHHH---H--HHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTE
T ss_pred CH--HHHHHHHHHHcCC---CCEEEEEeCCcchHHH---H--HHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCC
Confidence 76 4789999999999 9999987654322100 0 000000000 00011245699999999999999
Q ss_pred ceeEEEee
Q 018116 342 THYKITNV 349 (360)
Q Consensus 342 ~~~~~~~~ 349 (360)
+++++...
T Consensus 178 ~~~~~~~~ 185 (230)
T 3cc8_A 178 SISKVDRV 185 (230)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEec
Confidence 99988776
No 75
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.57 E-value=6.5e-15 Score=131.17 Aligned_cols=140 Identities=15% Similarity=0.131 Sum_probs=104.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CC-------------------------------
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TE------------------------------- 238 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~------------------------------- 238 (360)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999998887754 58999999 888887753 11
Q ss_pred -Ce-EEEeCCCCCC-C------CCccEEEeccccccCCh--hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhh
Q 018116 239 -NL-KYIAGDMFQY-I------PPADAYFFKLVFHAFGD--EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQV 307 (360)
Q Consensus 239 -ri-~~~~~D~~~~-~------p~~D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 307 (360)
++ ++..+|+.+. . ..||+|++..++|++++ ++..++|++++++|+| ||++++.+..... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~---~--- 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSS---Y--- 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCC---E---
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCc---e---
Confidence 27 9999999772 1 24999999999996543 3567899999999999 9999998843321 0
Q ss_pred hhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 308 TEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 308 ~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
+... .........+.+++.++|+++||+++++...+
T Consensus 205 ------~~~~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 ------YMIG-EQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ------EEET-TEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ------EEcC-CccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0000 00001234588999999999999999887664
No 76
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.57 E-value=1.9e-14 Score=128.05 Aligned_cols=145 Identities=13% Similarity=0.109 Sum_probs=104.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 679999999 888877653 4789999999976 444 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc----CCcccCHHHHHHHHHHC
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV----DGKERTDEEWKTLFLDA 339 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~g~~~t~~e~~~ll~~a 339 (360)
||+++. .++|++++++|+| ||.+++. ...+..... ......+..+...... .....+.+++.++|+++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAEASPE--WTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEECCCHH--HHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCCccHH--HHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence 999864 5789999999999 8998887 222111110 0000111111110000 11245789999999999
Q ss_pred CCceeEEE
Q 018116 340 GFTHYKIT 347 (360)
Q Consensus 340 Gf~~~~~~ 347 (360)
||+++.+.
T Consensus 187 Gf~~~~~~ 194 (263)
T 2yqz_A 187 GLKPRTRE 194 (263)
T ss_dssp TCCCEEEE
T ss_pred CCCcceEE
Confidence 99977653
No 77
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.57 E-value=2e-14 Score=127.64 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~ 269 (360)
....+|||||||+|.++..|++.+ .+++++|+ +.|++.+++..+++++.+|+.+ +++ .||+|++..++|+++.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 356799999999999999999874 58999999 9999999988999999999977 555 59999999999988653
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 270 DCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
+++++++++|+| ||.|+++....+.
T Consensus 116 ---~~~~e~~rvLkp---gG~l~~~~~~~~~ 140 (257)
T 4hg2_A 116 ---RFWAELRRVARP---GAVFAAVTYGLTR 140 (257)
T ss_dssp ---HHHHHHHHHEEE---EEEEEEEEECCCB
T ss_pred ---HHHHHHHHHcCC---CCEEEEEECCCCC
Confidence 679999999999 9999988765443
No 78
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.9e-14 Score=130.88 Aligned_cols=141 Identities=14% Similarity=0.100 Sum_probs=101.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C--C------CCc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQ-Y--I------PPA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~-~--~------p~~ 254 (360)
.+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+++|+.+|+.+ + . ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578899999999999999999987 8999999999 888887753 5799999999977 3 2 259
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc-ccCCcc--cCHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV-SVDGKE--RTDEE 331 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~g~~--~t~~e 331 (360)
|+|++..++||+ + ..++|++++++|+| ||.|++.+...+.....+.... ....+.... ..+... ...+.
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~w~~p~~~~ 186 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYADPIFPDYPEFDD--LMIEVPYGKQGLGPYWEQPGRSR 186 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEEEEECTTCGGGTT--HHHHHHHCTTTTGGGSCTTHHHH
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecCCccccCcHHHHH--HHHHhccCcccccchhhchhhHH
Confidence 999999999999 3 46889999999999 9999985554332111110000 111111000 001111 35667
Q ss_pred HHHHHHHCCCc
Q 018116 332 WKTLFLDAGFT 342 (360)
Q Consensus 332 ~~~ll~~aGf~ 342 (360)
+.++++++||.
T Consensus 187 ~~~~l~~~gfp 197 (299)
T 3g5t_A 187 LRNMLKDSHLD 197 (299)
T ss_dssp HHTTTTTCCCC
T ss_pred HHHhhhccCCC
Confidence 79999999993
No 79
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.57 E-value=4e-14 Score=122.19 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=100.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEe
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFF 259 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~ 259 (360)
.++..+. ...+..+|||||||+|.++..++ .+++++|+ +. ++++..+|+.+ +.+ .||+|++
T Consensus 57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 57 RIARDLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEEE
Confidence 3444443 13466899999999999988773 68999998 43 67889999877 444 5999999
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
..++|+ ++ ...+|++++++|+| ||.+++.+... ...+.++|.++++++
T Consensus 122 ~~~l~~-~~--~~~~l~~~~~~L~~---gG~l~i~~~~~--------------------------~~~~~~~~~~~l~~~ 169 (215)
T 2zfu_A 122 CLSLMG-TN--IRDFLEEANRVLKP---GGLLKVAEVSS--------------------------RFEDVRTFLRAVTKL 169 (215)
T ss_dssp ESCCCS-SC--HHHHHHHHHHHEEE---EEEEEEEECGG--------------------------GCSCHHHHHHHHHHT
T ss_pred ehhccc-cC--HHHHHHHHHHhCCC---CeEEEEEEcCC--------------------------CCCCHHHHHHHHHHC
Confidence 999984 33 46889999999999 99999986421 112789999999999
Q ss_pred CCceeEEEeeCCceeEEEEeC
Q 018116 340 GFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 340 Gf~~~~~~~~~~~~~vi~~~~ 360 (360)
||++++.....+...+++++|
T Consensus 170 Gf~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 170 GFKIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp TEEEEEEECCSTTCEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEEEEe
Confidence 999988776666666776654
No 80
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.55 E-value=4.3e-14 Score=127.58 Aligned_cols=141 Identities=20% Similarity=0.181 Sum_probs=109.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~ 254 (360)
..+++.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 34455555 457889999999999999999988 679999999 888887764 2389999999977 334 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..++||+++++...+|++++++|+| ||.++++.....+....+ ......++.+++.+
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE 247 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence 999999999999998889999999999999 999888776554432210 00123457788888
Q ss_pred HHHHCCCceeEEE
Q 018116 335 LFLDAGFTHYKIT 347 (360)
Q Consensus 335 ll~~aGf~~~~~~ 347 (360)
+++. |+++...
T Consensus 248 ~~~~--~~~~~~~ 258 (286)
T 3m70_A 248 YYKD--WEFLEYN 258 (286)
T ss_dssp HTTT--SEEEEEE
T ss_pred HhcC--CEEEEEE
Confidence 8855 8877764
No 81
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.55 E-value=1.2e-14 Score=124.77 Aligned_cols=150 Identities=12% Similarity=0.016 Sum_probs=107.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~D~i~~~~~l 263 (360)
..+..+|||+|||+|..+..++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 456789999999999985555544 5779999999 888887764 4679999999977 444 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc-ccCCcccCHHHHHHHHHHCCCc
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV-SVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
||++.++..+++++++++|+| ||.+++.+...++.............+...... ......++.+++.++|++.||.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 176 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence 999878888999999999999 999999887765432110000000000000000 0112456899999999999987
Q ss_pred eeEE
Q 018116 343 HYKI 346 (360)
Q Consensus 343 ~~~~ 346 (360)
..+.
T Consensus 177 ~~~~ 180 (209)
T 2p8j_A 177 FKED 180 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6554
No 82
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.54 E-value=4.9e-14 Score=127.73 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=96.2
Q ss_pred CCCCEEEEeCCCCchHHH----HHHHHCCCCeE--EEeec-hHHHhcCCC-------CCCeEE--EeCCCCC-C------
Q 018116 194 EGLGSIVDVGGGNGGFSK----IISEAFPGIKC--TVLDL-PHAVANMPQ-------TENLKY--IAGDMFQ-Y------ 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~-------~~ri~~--~~~D~~~-~------ 250 (360)
.+..+|||||||+|.++. .++.++|+.++ +++|. +.|++.+++ ..++++ ..++... +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 356799999999997654 44556788854 99999 898886653 134544 4555432 1
Q ss_pred CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhccc--CCcc
Q 018116 251 IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSV--DGKE 326 (360)
Q Consensus 251 ~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--~g~~ 326 (360)
++ .||+|++++++||++|. .+.|++++++|+| ||++++.+...+. . ... .+......... ....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~---~--~~~--~~~~~~~~~~~~~~~~~ 198 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSGSS---G--WDK--LWKKYGSRFPQDDLCQY 198 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECTTS---H--HHH--HHHHHGGGSCCCTTCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCC---CcEEEEEEecCCc---c--HHH--HHHHHHHhccCCCcccC
Confidence 22 59999999999999986 4679999999999 9999998654211 1 111 11111100000 1245
Q ss_pred cCHHHHHHHHHHCCCceeEE
Q 018116 327 RTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~ 346 (360)
++.++|.++|+++||+++..
T Consensus 199 ~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 199 ITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CCHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHCCCceEEE
Confidence 68999999999999987763
No 83
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.53 E-value=1.2e-14 Score=129.65 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=100.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-----C----------------------------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ-----T---------------------------- 237 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-----~---------------------------- 237 (360)
..++.+|||||||+|.++..++.. +. +++++|+ +.+++.+++ .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 346789999999999877655543 33 6999999 888886542 0
Q ss_pred --CCeE-EEeCCCCCC-------CCCccEEEeccccccCC--hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch
Q 018116 238 --ENLK-YIAGDMFQY-------IPPADAYFFKLVFHAFG--DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH 305 (360)
Q Consensus 238 --~ri~-~~~~D~~~~-------~p~~D~i~~~~~lh~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~ 305 (360)
.++. +..+|+.+. .+.||+|+++.+|||.. .++..++|++++++|+| ||+|++.+.........
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~~~~- 206 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYMV- 206 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEEE-
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCcccee-
Confidence 1233 889999772 23699999999999853 35677899999999999 99999987543211000
Q ss_pred hhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 306 QVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 306 ~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.. ........+.+++.++|+++||+++++...+
T Consensus 207 --------g~----~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 207 --------GK----REFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp --------TT----EEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred --------CC----eEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 00 0011224589999999999999999887653
No 84
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.53 E-value=7.8e-15 Score=132.88 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=88.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC-C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ-Y 250 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~-~ 250 (360)
..+...++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++.+..+|+.. +
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 33444444 456789999999999999999988 559999999 888887752 2578899999876 3
Q ss_pred ---CC--CccEEEec-cccccCCh-----hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 251 ---IP--PADAYFFK-LVFHAFGD-----EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 251 ---~p--~~D~i~~~-~~lh~~~~-----~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
++ .||+|++. +++||+++ ++..++|++++++|+| ||++++....
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 177 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHRN 177 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 33 59999998 89999998 7778999999999999 8999887653
No 85
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.53 E-value=8.8e-14 Score=123.03 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=102.7
Q ss_pred CCCCEEEEeCCCC--chHHHHH-HHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---------CCc
Q 018116 194 EGLGSIVDVGGGN--GGFSKII-SEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---------PPA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---------p~~ 254 (360)
.+..+|||||||+ +..+..+ .+..|+.+++++|. |.|++.+++ ..+++|+.+|+.++. ..|
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3568999999997 4444444 44689999999999 999998874 247999999997731 125
Q ss_pred c-----EEEeccccccCChhH-HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccC
Q 018116 255 D-----AYFFKLVFHAFGDED-CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERT 328 (360)
Q Consensus 255 D-----~i~~~~~lh~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t 328 (360)
| .|+++.+|||+++++ ...+|++++++|+| ||+|++.+...+..... . ....+...........||
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~~--~---~~~~~~~~~~g~p~~~rs 228 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQE--V---GRVAREYAARNMPMRLRT 228 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHHH--H---HHHHHHHHHTTCCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHHH--H---HHHHHHHHhcCCCCccCC
Confidence 5 588999999999876 57899999999999 99999988776532111 1 111122111112345689
Q ss_pred HHHHHHHHHHCCCceeE
Q 018116 329 DEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~ 345 (360)
.+|+.++|. ||+.++
T Consensus 229 ~~ei~~~f~--Glelve 243 (277)
T 3giw_A 229 HAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHHTTT--TSEECT
T ss_pred HHHHHHHhC--CCcccC
Confidence 999999994 998544
No 86
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.52 E-value=7e-14 Score=126.65 Aligned_cols=153 Identities=12% Similarity=-0.000 Sum_probs=109.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC-C--CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YI-P--PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~-p--~~D~i~~~ 260 (360)
..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +. + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998876 5569999999 888887764 2579999999987 44 2 59999999
Q ss_pred ccccc--CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCc--------ch----------hhhh-HhHhhhhhhh
Q 018116 261 LVFHA--FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKED--------KH----------QVTE-AKLLGDTLMS 319 (360)
Q Consensus 261 ~~lh~--~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~--------~~----------~~~~-~~~~~d~~~~ 319 (360)
.++|| .+.++..++|++++++|+| ||++++..+....... .. ..+. ....+.+...
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99998 5677788999999999999 9999987754321000 00 0000 0000000000
Q ss_pred cc---cCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 320 VS---VDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 320 ~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.. .....++.++|.++++++||+++++...
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00 0123458999999999999999988765
No 87
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.52 E-value=4.1e-14 Score=134.67 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=107.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC------CC--CC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ------YI--PP 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~------~~--p~ 253 (360)
..+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. +. ..
T Consensus 97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 45556665 567889999999999999999986 569999999 8898888753 34433322221 11 25
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++.+++||+++. ..+|++++++|+| ||++++..+.... ... ...+..........++.++|.
T Consensus 172 fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~------~~~---~~~~~~~~~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGD------IVA---KTSFDQIFDEHFFLFSATSVQ 237 (416)
T ss_dssp EEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHH------HHH---HTCGGGCSTTCCEECCHHHHH
T ss_pred EEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHH------hhh---hcchhhhhhhhhhcCCHHHHH
Confidence 9999999999999864 6789999999999 8998886544311 000 011111111223457999999
Q ss_pred HHHHHCCCceeEEEeeC
Q 018116 334 TLFLDAGFTHYKITNVF 350 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~ 350 (360)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998875
No 88
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.51 E-value=4.4e-13 Score=111.45 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=97.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC--CccEEEeccccccCChh-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIP--PADAYFFKLVFHAFGDE- 269 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~~~~~- 269 (360)
.+..+|||+|||+|.++..+++.. +++++|+ +.+++. .++++++.+|+.++.+ .||+|+++..+|+.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 456799999999999999999886 9999999 889888 6789999999988654 59999998888865543
Q ss_pred ------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 270 ------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 270 ------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
+...+++++.+.+ | ||++++.+... ...+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence 3457889999988 8 99998866321 14678889999999998
Q ss_pred eEEEeeC
Q 018116 344 YKITNVF 350 (360)
Q Consensus 344 ~~~~~~~ 350 (360)
+.+....
T Consensus 144 ~~~~~~~ 150 (170)
T 3q87_B 144 RILKVRK 150 (170)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 8887663
No 89
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.50 E-value=1.3e-13 Score=118.02 Aligned_cols=131 Identities=10% Similarity=0.091 Sum_probs=104.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-~~D~i~~~~~lh 264 (360)
..+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..++++..+|+....+ .||+|++...+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 35678999999999999999776 56779999999 888887764 2349999999987444 699999987776
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
+ ...++++++++|+| ||++++.+.... +.+++.++++++||+.+
T Consensus 137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence 4 35789999999999 899988654321 45788899999999999
Q ss_pred EEEeeCCceeEEEEeC
Q 018116 345 KITNVFGLKSLIEVYP 360 (360)
Q Consensus 345 ~~~~~~~~~~vi~~~~ 360 (360)
++....+..+++.-+|
T Consensus 181 ~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 181 LKMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EeeccCCEEEEEEecc
Confidence 9888777766665443
No 90
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.50 E-value=6.4e-13 Score=117.44 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=81.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEec-ccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFK-LVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~-~~l 263 (360)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. ..+
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence 346689999999999999999986 679999999 888887763 3479999999977 444 59999986 466
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
++++.++..++|++++++|+| ||.+++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 777878889999999999999 8887764
No 91
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.50 E-value=4.2e-13 Score=114.84 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=99.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---IPP 253 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~p~ 253 (360)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3445555 66788999999999999999999999999999999 988888764 37899999999763 246
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++...++ +..++++++.++|+| ||++++..... .+.+++.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~----------------------------~~~~~~~ 152 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTL----------------------------DTLTKAV 152 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBH----------------------------HHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEeccc----------------------------ccHHHHH
Confidence 99999988775 345789999999999 99998854321 0356778
Q ss_pred HHHHHCCCceeEE
Q 018116 334 TLFLDAGFTHYKI 346 (360)
Q Consensus 334 ~ll~~aGf~~~~~ 346 (360)
++++++|| .+++
T Consensus 153 ~~l~~~g~-~~~~ 164 (204)
T 3e05_A 153 EFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHTTC-EEEE
T ss_pred HHHHHCCC-ceeE
Confidence 88999998 4433
No 92
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.49 E-value=4.2e-14 Score=127.95 Aligned_cols=139 Identities=15% Similarity=0.212 Sum_probs=98.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC---------------------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TE--------------------------------- 238 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--------------------------------- 238 (360)
+..+|||||||+|.++. ++...+..+++++|+ +.+++.+++ ..
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 56899999999999543 444445679999999 888876542 00
Q ss_pred -CeEEEeCCCCC--C-----CC--CccEEEeccccccCChh--HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchh
Q 018116 239 -NLKYIAGDMFQ--Y-----IP--PADAYFFKLVFHAFGDE--DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQ 306 (360)
Q Consensus 239 -ri~~~~~D~~~--~-----~p--~~D~i~~~~~lh~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~ 306 (360)
.++++.+|+.+ + .+ .||+|++..++|+++++ +..++|++++++|+| ||+|++.+........
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~~~--- 223 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYL--- 223 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEE---
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcceEE---
Confidence 14567778876 2 22 29999999999996543 667899999999999 9999997643211000
Q ss_pred hhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeC
Q 018116 307 VTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVF 350 (360)
Q Consensus 307 ~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
..+ .......++.++|.++|+++||+++++...+
T Consensus 224 ------~~~----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 224 ------AGE----ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ------ETT----EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ------cCC----eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 000 0001234689999999999999998876553
No 93
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.49 E-value=2.4e-13 Score=116.03 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=101.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC--CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP--PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~ 265 (360)
+. +|||||||+|.++..+++. +.+++++|. +.+++.+++ ..++++..+|+.+ +.+ .||+|++. ++|
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 44 9999999999999999986 679999999 888887764 3489999999987 444 59999984 455
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
++.++..++|++++++|+| ||.+++.+........ ... ........++.+++.++|+ ||++++
T Consensus 105 ~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQY-----------NTG-GPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGG-----------TSC-CSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccC-----------CCC-CCCcceeecCHHHHHHHhc--CceEEE
Confidence 6777788999999999999 9999998775433110 000 0001123569999999999 999988
Q ss_pred EEee
Q 018116 346 ITNV 349 (360)
Q Consensus 346 ~~~~ 349 (360)
+...
T Consensus 168 ~~~~ 171 (202)
T 2kw5_A 168 ANNL 171 (202)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7655
No 94
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.47 E-value=1.8e-13 Score=118.45 Aligned_cols=147 Identities=13% Similarity=0.093 Sum_probs=97.4
Q ss_pred HHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhc----CCC------CCCeEEEeCCCCC-CCC-
Q 018116 186 KDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVAN----MPQ------TENLKYIAGDMFQ-YIP- 252 (360)
Q Consensus 186 ~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~ri~~~~~D~~~-~~p- 252 (360)
+..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +.+
T Consensus 20 ~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 97 (218)
T 3mq2_A 20 FEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS 97 (218)
T ss_dssp HHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC
T ss_pred HHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC
Confidence 34444 56778999999999999999999999999999999 886664 221 4589999999987 443
Q ss_pred CccEEEec---ccc--ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCccc
Q 018116 253 PADAYFFK---LVF--HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKER 327 (360)
Q Consensus 253 ~~D~i~~~---~~l--h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~ 327 (360)
+.|.|++. ..+ ||+++. ..+|++++++|+| ||++++......-.... ..+... .......
T Consensus 98 ~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---------~~~~~~-~~~~~~~ 162 (218)
T 3mq2_A 98 GVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSV---------PEVGEH-PEPTPDS 162 (218)
T ss_dssp CEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBC---------GGGTTC-CCCCHHH
T ss_pred CCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEeccccccccc---------cccccC-CccchHH
Confidence 23665522 222 244443 5789999999999 89888843221111100 000000 0001112
Q ss_pred CHHHHHHHHHHCCCceeEEEee
Q 018116 328 TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..+++.++++++||++.++..+
T Consensus 163 ~~~~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 163 ADEWLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCceeeecc
Confidence 3456888999999999888765
No 95
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.47 E-value=2.5e-13 Score=118.70 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=101.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcC----CCCCCeEEEeCCCCCC-----C-CCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANM----PQTENLKYIAGDMFQY-----I-PPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~ri~~~~~D~~~~-----~-p~~D~i~~~~ 261 (360)
..+..+|||||||+|.++..+++.++..+++++|+ +.+++.+ +..+++.++.+|+..+ . ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 45678999999999999999999988789999999 8877654 3357899999998761 2 2599998
Q ss_pred ccccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 262 VFHAFGDE-DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 262 ~lh~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
|+++++ ....+|+++.+.|+| ||++++. .......... . . .....+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~---~---~-----------~~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTK---D---P-----------KEIFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSS---C---H-----------HHHHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCC---C---H-----------HHhhHHHHH-HHHHCC
Confidence 555543 345679999999999 8999886 2211111100 0 0 001236777 899999
Q ss_pred CceeEEEeeCCc---eeEEEEe
Q 018116 341 FTHYKITNVFGL---KSLIEVY 359 (360)
Q Consensus 341 f~~~~~~~~~~~---~~vi~~~ 359 (360)
|+.+++.++..+ ..++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEE
Confidence 999999887554 5666654
No 96
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.46 E-value=9.1e-13 Score=118.33 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=105.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC--CCccEEEec----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI--PPADAYFFK---- 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~--p~~D~i~~~---- 260 (360)
.+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.++. ..||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3567999999999999999999999999999999 888887764 247999999998854 359999997
Q ss_pred ---------cccccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc
Q 018116 261 ---------LVFHAFGD----------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS 321 (360)
Q Consensus 261 ---------~~lh~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 321 (360)
.+++|.|. +...++++++.+.|+| ||.+++...
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~------------------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG------------------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC-------------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-------------------------
Confidence 34444432 3457899999999999 888877310
Q ss_pred cCCcccCHHHHHHHHHHCCCceeEEEe-eCCceeEEEEeC
Q 018116 322 VDGKERTDEEWKTLFLDAGFTHYKITN-VFGLKSLIEVYP 360 (360)
Q Consensus 322 ~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 360 (360)
..+.+++.++++++||+.+++.. ..+...++.+++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 11467889999999999777654 466666777653
No 97
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.45 E-value=2.1e-13 Score=117.71 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=84.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+..+ .||+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999884 58999999 888877653 4589999999987323 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 266 FGD-EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 266 ~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+++ +...++|++++++|+| ||.+++....
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 996 5566899999999999 8998886653
No 98
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.44 E-value=3.6e-13 Score=115.81 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=95.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEeccccccCCh
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~ 268 (360)
+..+|||||||+|.++..+ +. +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++||+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999998877 45 8999999 888887765 4689999999977 444 5999999999999986
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh-hhhcccCCcccCHHHHHHHHHHCC
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT-LMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
. .++|++++++|+| ||++++.+...... .......... ........+.++.++++++|+ |
T Consensus 111 ~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 111 V--ERVLLEARRVLRP---GGALVVGVLEALSP-----WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp H--HHHHHHHHHHEEE---EEEEEEEEECTTSH-----HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred H--HHHHHHHHHHcCC---CCEEEEEecCCcCc-----HHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 4 5789999999999 99999987644321 0000000000 000001235579999999998 7
No 99
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.44 E-value=2.9e-13 Score=117.80 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=92.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hH-HHhcC---CC------CCCeEEEeCCCCCC-CCCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PH-AVANM---PQ------TENLKYIAGDMFQY-IPPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a---~~------~~ri~~~~~D~~~~-~p~~D~i~~~~ 261 (360)
.+..+|||||||+|.++..++++.|+.+++++|+ +. +++.| ++ ..++.|+.+|+..- ...+|.|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 5678999999999999999999899999999999 34 44443 43 35799999998663 11246555544
Q ss_pred ccccCChh------HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 262 VFHAFGDE------DCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 262 ~lh~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
+.+.|+.. +...+|++++++|+| ||++++...........+ . ....... ........+++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~-~----~~~~~~~---~~~~~~~~~el~~~ 171 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDSYEEAE-I----KKRGLPL---LSKAYFLSEQYKAE 171 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEeccccchhch-h----hhcCCCC---CChhhcchHHHHHH
Confidence 44434331 113579999999999 999988544333211000 0 0000000 00001122359999
Q ss_pred HHHCCCceeEEEeeC
Q 018116 336 FLDAGFTHYKITNVF 350 (360)
Q Consensus 336 l~~aGf~~~~~~~~~ 350 (360)
++++||.+.++....
T Consensus 172 l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 172 LSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCCeeeeeecC
Confidence 999999988876653
No 100
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.42 E-value=4.9e-13 Score=119.39 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=80.9
Q ss_pred CCCEEEEeCCCCch----HHHHHHHHCC----CCeEEEeec-hHHHhcCCCC----------------------------
Q 018116 195 GLGSIVDVGGGNGG----FSKIISEAFP----GIKCTVLDL-PHAVANMPQT---------------------------- 237 (360)
Q Consensus 195 ~~~~iLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 237 (360)
+..+|+|+|||+|. +++.+++.++ +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999999 9998876531
Q ss_pred ---------CCeEEEeCCCCC-CCC---CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 238 ---------ENLKYIAGDMFQ-YIP---PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 238 ---------~ri~~~~~D~~~-~~p---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.+|.|..+|+.+ +++ .||+|+|.++++|++++...+++++++++|+| ||.|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 269999999988 454 59999999999999998889999999999999 888776
No 101
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.41 E-value=2.1e-12 Score=128.43 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=86.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------------CCCeEEEeCCCCC-CCC--Ccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------------TENLKYIAGDMFQ-YIP--PAD 255 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~ri~~~~~D~~~-~~p--~~D 255 (360)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ..+++|+.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 4578899999999999999999987 5679999999 888887743 3579999999987 443 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+|++..++||++++....++++++++|+| | .++|..+.
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN 836 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPN 836 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECB
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecC
Confidence 99999999999999888899999999999 6 66666543
No 102
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.41 E-value=2.4e-12 Score=108.63 Aligned_cols=140 Identities=14% Similarity=0.251 Sum_probs=105.4
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC--CeEEEeCCCCCCCC--
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TE--NLKYIAGDMFQYIP-- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--ri~~~~~D~~~~~p-- 252 (360)
.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. |++++.+|+.+..+
T Consensus 43 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 43 ILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 3444444 457789999999999999999988 789999999 888877663 23 59999999987543
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++...+|+ ..+....++++++++|+| ||.+++...... ...++
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~ 166 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQ----------------------------GAKSL 166 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTH----------------------------HHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCC----------------------------ChHHH
Confidence 5999999887774 455667899999999999 899988764321 12346
Q ss_pred HHHHHHCCCceeEEEeeCCceeEEEEeC
Q 018116 333 KTLFLDAGFTHYKITNVFGLKSLIEVYP 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 360 (360)
.+.+++. |..+++........++.++|
T Consensus 167 ~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 167 AKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 6667776 66666776666667776654
No 103
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.41 E-value=5.3e-13 Score=123.84 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=90.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------------TENLKYIAGD 246 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~ri~~~~~D 246 (360)
..++..+. ..+..+|||||||+|.++..++..++..+++|+|+ +.+++.|++ .++|+|+.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555555 67889999999999999999999887667999999 777665542 3789999999
Q ss_pred CCC-CC----CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 018116 247 MFQ-YI----PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKE 302 (360)
Q Consensus 247 ~~~-~~----p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~ 302 (360)
+.+ ++ +.+|+|+++++++ + ++..+.|+++.+.|+| ||+|++.|.+.+...
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 988 43 3699999987764 2 3456778999999999 999999999888654
No 104
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.39 E-value=2.6e-13 Score=116.62 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=87.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC--C-----CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY--I-----PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~--~-----p~~D~i~~~ 260 (360)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.++ . ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 999988875 11688889988763 2 469999995
Q ss_pred ccc------ccCChhHH------------------HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhh
Q 018116 261 LVF------HAFGDEDC------------------LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDT 316 (360)
Q Consensus 261 ~~l------h~~~~~~~------------------~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 316 (360)
..+ ++++++.. .+++++++++|+| ||++++++..
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~------------------- 166 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVG------------------- 166 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECT-------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEEC-------------------
Confidence 443 33333222 6789999999999 9996665431
Q ss_pred hhhcccCCcccCHHHHHHHHH--HCCCceeEEEee-CCceeEEEEe
Q 018116 317 LMSVSVDGKERTDEEWKTLFL--DAGFTHYKITNV-FGLKSLIEVY 359 (360)
Q Consensus 317 ~~~~~~~g~~~t~~e~~~ll~--~aGf~~~~~~~~-~~~~~vi~~~ 359 (360)
....+++.++++ ++||..+++... .+...++.++
T Consensus 167 ---------~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 167 ---------HNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ---------TSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ---------CccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 113466778888 889987777665 3344455443
No 105
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.39 E-value=4.4e-12 Score=109.13 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=95.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHH----hcCCCCCCeEEEeCCCCCC-----CC-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAV----ANMPQTENLKYIAGDMFQY-----IP-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~ri~~~~~D~~~~-----~p-~~D~i~~~~ 261 (360)
..++.+|||||||+|.++..+++..+..+++++|+ +.++ +.++...++.++.+|+..+ .+ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988779999999 7654 3343356799999998662 22 59999986
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH----HHHHH
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW----KTLFL 337 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~----~~ll~ 337 (360)
+.+ .++...++++++++|+| ||++++.-...+ .+ ...+.+++ .+.++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~--------------~~---------~~~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARS--------------ID---------STAEPEEVFKSVLKEME 184 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHH--------------HC---------TTSCHHHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCC--------------cc---------ccCCHHHHHHHHHHHHH
Confidence 322 23344569999999999 999988732210 00 01122332 12378
Q ss_pred HCCCceeEEEeeCC---ceeEEEEeC
Q 018116 338 DAGFTHYKITNVFG---LKSLIEVYP 360 (360)
Q Consensus 338 ~aGf~~~~~~~~~~---~~~vi~~~~ 360 (360)
++ |++++...... .+.++.++|
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 88 99999988833 566777664
No 106
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.38 E-value=2.2e-12 Score=111.90 Aligned_cols=141 Identities=12% Similarity=0.107 Sum_probs=100.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCCC--C----CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMP----QTENLKYIAGDMFQY--I----PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~----~~~ri~~~~~D~~~~--~----p~~D~i~~~ 260 (360)
++++.+|||+|||+|.++..+++. .|.-+++++|+ +.+++.++ +..++..+.+|...+ . ..+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 688999999999999999999987 48899999999 88887654 357899999988662 1 248988753
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
+++.. +...+++++++.||| ||+++|........... ......++-.+.|+++|
T Consensus 155 --~~~~~--~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~-------------------p~~~~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 --VAQPE--QAAIVVRNARFFLRD---GGYMLMAIKARSIDVTT-------------------EPSEVYKREIKTLMDGG 208 (233)
T ss_dssp --CCCTT--HHHHHHHHHHHHEEE---EEEEEEEEECCHHHHHT-------------------CCCHHHHHHHHHHHHTT
T ss_pred --ccCCh--hHHHHHHHHHHhccC---CCEEEEEEecccCCCCC-------------------ChHHHHHHHHHHHHHCC
Confidence 22222 345789999999999 99998865332111000 00001234456788999
Q ss_pred CceeEEEeeCC---ceeEEEEe
Q 018116 341 FTHYKITNVFG---LKSLIEVY 359 (360)
Q Consensus 341 f~~~~~~~~~~---~~~vi~~~ 359 (360)
|+.++...+.. .+.++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 99999988844 35666554
No 107
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.37 E-value=1.6e-12 Score=115.06 Aligned_cols=106 Identities=12% Similarity=0.029 Sum_probs=82.4
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC----C-CCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ----Y-IPP 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~----~-~p~ 253 (360)
..++..++ ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ...+.....++.. . ...
T Consensus 35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 34455555 667889999999999999999987 679999999 999988764 2223333333321 1 126
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
||+|++..++||++.++...++++++++| | ||++++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 99999999999999988899999999999 9 999998754
No 108
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.36 E-value=1.4e-12 Score=108.68 Aligned_cols=100 Identities=10% Similarity=0.178 Sum_probs=81.5
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC----C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI----P 252 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~----p 252 (360)
++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++ ++.+|..+.+ +
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 344444 56778999999999999999999999999999999 888887763 3378 8889886632 4
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.||+|++...+|+ .++++++.+.|+| ||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEee
Confidence 6999999999986 4679999999999 999988664
No 109
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=111.39 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=85.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh 264 (360)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..+++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 356789999999999999999988554 8999999 888877654 3689999999977 444 599999999988
Q ss_pred cCC-------------hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 265 AFG-------------DEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 265 ~~~-------------~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
++. .++..++|++++++|+| ||++++.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 765 44667899999999999 99999987543
No 110
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.36 E-value=1.2e-13 Score=121.26 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=75.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCC--CccEEEe---
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ---YIP--PADAYFF--- 259 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~---~~p--~~D~i~~--- 259 (360)
.++.+|||||||+|..+..+++..| .+++++|+ |.+++.+++ ..++.++.+|... +.+ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 5678999999999999999988766 48999999 999988764 5678888888744 334 4998864
Q ss_pred --ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 260 --KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 260 --~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...++|+++ ...++++++|+||| ||+|++++
T Consensus 138 ~~~~~~~~~~~--~~~~~~e~~rvLkP---GG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQ--FNFIKNHAFRLLKP---GGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEE---EEEEEECC
T ss_pred ecccchhhhcc--hhhhhhhhhheeCC---CCEEEEEe
Confidence 445555554 46789999999999 89887754
No 111
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.35 E-value=2.9e-13 Score=119.95 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=96.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC----CCC-----CccEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ----YIP-----PADAY 257 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~----~~p-----~~D~i 257 (360)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999988899999999 999887764 3579999999533 333 59999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCC
Q 018116 258 FFKLVFHAFGD-------------EDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG 324 (360)
Q Consensus 258 ~~~~~lh~~~~-------------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 324 (360)
++.-..|+... +....++.+++++|+| ||++.+++.+... ...............+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~--------~~~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHD--------SLQLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHH--------HHHHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHH--------HHhcccceEEEEECCC
Confidence 99866654431 1123567889999999 8988776543211 0000111111111123
Q ss_pred cccCHHHHHHHHHHCCCceeEEEee
Q 018116 325 KERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
...+.+++.++++++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 4445689999999999999888776
No 112
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.35 E-value=6.2e-12 Score=109.52 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=96.2
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCC--CCCC--CccEEEecc
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMF--QYIP--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~--~~~p--~~D~i~~~~ 261 (360)
..+..+|||+||| +|.++..+++.. +.+++++|+ +.+++.+++ ..+++++.+|+. .+.+ .||+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4578899999999 999999999986 789999999 888887764 238999999963 3443 599999887
Q ss_pred ccccCChhH-----------------HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCC
Q 018116 262 VFHAFGDED-----------------CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDG 324 (360)
Q Consensus 262 ~lh~~~~~~-----------------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 324 (360)
.+++.++.+ ..++++++.+.|+| ||++++.....
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~-------------------------- 182 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDK-------------------------- 182 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESC--------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEeccc--------------------------
Confidence 766544322 36789999999999 99998853210
Q ss_pred cccCHHHHHHHHHHCCCceeEEEeeCC
Q 018116 325 KERTDEEWKTLFLDAGFTHYKITNVFG 351 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 351 (360)
....+++.+++++.||.+..+....+
T Consensus 183 -~~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 183 -EKLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred -HhHHHHHHHHHHHcCCceEEEEecCC
Confidence 01346788999999998777655544
No 113
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.35 E-value=6.5e-12 Score=108.38 Aligned_cols=130 Identities=11% Similarity=0.117 Sum_probs=101.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP---PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p---~~D~i~~~~ 261 (360)
..++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.++.++ .||+|++..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 34678999999999999999999999899999999 888888764 4689999999988654 499998765
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+ ..+-...+|..+.+.|+| +|++++.- . ......+++|.+.||
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~~---~~~lVlq~-~-----------------------------~~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLAN---VERLILQP-N-----------------------------NREDDLRIWLQDHGF 135 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCTT---CCEEEEEE-S-----------------------------SCHHHHHHHHHHTTE
T ss_pred C----ChHHHHHHHHHHHHHhCC---CCEEEEEC-C-----------------------------CCHHHHHHHHHHCCC
Confidence 4 344567899999999999 88877721 1 135677889999999
Q ss_pred ceeEEEee--CC-ceeEEEEe
Q 018116 342 THYKITNV--FG-LKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~--~~-~~~vi~~~ 359 (360)
.+++-.-+ .+ ++.+|.+.
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98876544 23 34465554
No 114
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.34 E-value=4.6e-12 Score=110.71 Aligned_cols=139 Identities=9% Similarity=0.073 Sum_probs=95.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHh----cCCCCCCeEEEeCCCCCC--C----CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVA----NMPQTENLKYIAGDMFQY--I----PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~ri~~~~~D~~~~--~----p~~D~i~~~ 260 (360)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++ .++...+++++.+|+.+. . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4567899999999999999999986 7789999999 66544 333357899999999872 1 259999984
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC-CCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE-KEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
.. ..+....++++++++|+| ||.+++. ..... ..... .. . ... .+ .++|+++
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~---~~-~-------------~~~-~~-~~~l~~~ 207 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVIS-IKANCIDSTAS---AE-A-------------VFA-SE-VKKMQQE 207 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEEE-EEHHHHCSSSC---HH-H-------------HHH-HH-HHTTGGG
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEEE-EcccccccCCC---HH-H-------------HHH-HH-HHHHHHC
Confidence 43 233445678999999999 8888883 22110 00000 00 0 001 23 5888999
Q ss_pred CCceeEEEeeCCc---eeEEEE
Q 018116 340 GFTHYKITNVFGL---KSLIEV 358 (360)
Q Consensus 340 Gf~~~~~~~~~~~---~~vi~~ 358 (360)
||+++++..+..+ ..++.+
T Consensus 208 Gf~~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 208 NMKPQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp TEEEEEEEECTTTSSSEEEEEE
T ss_pred CCceEEEEecCCccCCcEEEEE
Confidence 9999987776432 555544
No 115
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.34 E-value=3.5e-12 Score=107.25 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=91.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--CC-C-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ--YI-P-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~--~~-p-~~D~i~~~~ 261 (360)
..++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .++++++..|+.. .. + .||+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 789999999 999988764 2789999977654 12 3 599998763
Q ss_pred -ccccC------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 262 -VFHAF------GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 262 -~lh~~------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
.+++- ..+...++|+++.++|+| ||++++........... . .....+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~----------------~~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----E----------------KDAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----H----------------HHHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----H----------------HHHHHHHHH
Confidence 22210 224566889999999999 99998876543222111 0 002344555
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
.+...+|.+.....+
T Consensus 155 ~l~~~~~~~~~~~~~ 169 (185)
T 3mti_A 155 GLDQRVFTAMLYQPL 169 (185)
T ss_dssp HSCTTTEEEEEEEES
T ss_pred hCCCceEEEEEehhh
Confidence 556667888777666
No 116
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.34 E-value=6.6e-13 Score=116.38 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=78.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCC--CccEEEe-cc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ---YIP--PADAYFF-KL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~---~~p--~~D~i~~-~~ 261 (360)
.+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 467899999999999999996643 348999999 899887764 4679999999865 344 5999998 55
Q ss_pred c--cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 262 V--FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 262 ~--lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
. .+++.......++++++++|+| ||++++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 5 3344444556789999999999 9999887643
No 117
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.34 E-value=7.8e-12 Score=114.26 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=82.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCC-C----C--C
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------------TENLKYIAGDMFQ-Y----I--P 252 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~ri~~~~~D~~~-~----~--p 252 (360)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999999874 6789999999 888877653 2379999999976 3 3 2
Q ss_pred --CccEEEeccccccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 253 --PADAYFFKLVFHAF--GDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 253 --~~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.||+|++..++|+. +.++...+|++++++|+| ||.+++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCC
Confidence 59999999999987 445677999999999999 8998887664
No 118
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.34 E-value=1.2e-11 Score=105.94 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=93.6
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CCC
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IPP 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p~ 253 (360)
++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 444455 567789999999999999999988 789999999 888887764 23899999999872 347
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++...+ + .. +++++.++|+| ||++++..... .+..++.
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~~~----------------------------~~~~~~~ 164 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAVTL----------------------------ESETLLT 164 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEECSH----------------------------HHHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEecCc----------------------------ccHHHHH
Confidence 9999987644 1 23 89999999999 99988854321 0345677
Q ss_pred HHHHHCCCceeEEE
Q 018116 334 TLFLDAGFTHYKIT 347 (360)
Q Consensus 334 ~ll~~aGf~~~~~~ 347 (360)
+++++.||++.++.
T Consensus 165 ~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 165 QLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHhCCCcEEEEE
Confidence 78888898776653
No 119
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.33 E-value=2.9e-12 Score=112.63 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=93.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-----CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI-----PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~-----p~~D~i~~~ 260 (360)
.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4678999999999999999999889999999999 888887763 3469999999865 32 259999987
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.+ .+ ...+++.+.++|+| ||.+++..... .. ....++.+.+++.|
T Consensus 149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~g~~----~~----------------------~~~~~~~~~l~~~g 193 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKK---NGLFVALKAAS----AE----------------------EELNAGKKAITTLG 193 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEE---EEEEEEEECC-----CH----------------------HHHHHHHHHHHHTT
T ss_pred cc----CC--HHHHHHHHHHhcCC---CCEEEEEeCCC----ch----------------------HHHHHHHHHHHHcC
Confidence 63 22 46789999999999 89988753111 00 01346778899999
Q ss_pred CceeEEEee
Q 018116 341 FTHYKITNV 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|.+.++...
T Consensus 194 ~~~~~~~~~ 202 (240)
T 1xdz_A 194 GELENIHSF 202 (240)
T ss_dssp EEEEEEEEE
T ss_pred CeEeEEEEE
Confidence 998877654
No 120
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.33 E-value=1.5e-11 Score=105.91 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=79.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP--PADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p--~~D~i~~~~ 261 (360)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++.+|+.+ + ++ .||+|++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 3567999999999999999999999999999999 888887764 3689999999976 3 33 499999876
Q ss_pred ccccCChh------HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFGDE------DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...+.... ....++++++++|+| ||.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 54322111 124689999999999 89988753
No 121
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.32 E-value=1.3e-11 Score=106.61 Aligned_cols=130 Identities=8% Similarity=0.013 Sum_probs=102.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C--CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-P--PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-p--~~D~i~~~~ 261 (360)
..++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.++.. + .||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 35678999999999999999999988889999999 888888774 568999999998853 3 599998766
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+ .-+-...+|....+.|++ +|+|++.-. ...+.++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~l~~---~~~lIlqp~------------------------------~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 99 M----GGRLIADILNNDIDKLQH---VKTLVLQPN------------------------------NREDDLRKWLAANDF 141 (230)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEES------------------------------SCHHHHHHHHHHTTE
T ss_pred C----chHHHHHHHHHHHHHhCc---CCEEEEECC------------------------------CChHHHHHHHHHCCC
Confidence 4 345577899999999998 888777221 136788899999999
Q ss_pred ceeEEEee---CCceeEEEEe
Q 018116 342 THYKITNV---FGLKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~---~~~~~vi~~~ 359 (360)
.+++-.-+ .-++.+|.+.
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98886654 2244466654
No 122
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.32 E-value=1.8e-12 Score=112.77 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=89.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC--CCC---CccEEEeccccccC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ--YIP---PADAYFFKLVFHAF 266 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~--~~p---~~D~i~~~~~lh~~ 266 (360)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 56789999999999999999998 679999999 999888765 6789999999965 333 599999861
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKI 346 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
+..++|++++++|+| ||+++.. +...+.+++.++++++||....+
T Consensus 120 ---~~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 ---GPTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ---CCSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred ---CHHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence 234679999999999 8888700 11224567888889999987776
Q ss_pred Eee
Q 018116 347 TNV 349 (360)
Q Consensus 347 ~~~ 349 (360)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 544
No 123
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.32 E-value=2.6e-11 Score=105.44 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=98.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcC----CCCCCeEEEeCCCCCC-----CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANM----PQTENLKYIAGDMFQY-----IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~ri~~~~~D~~~~-----~p-~~D~i~~~ 260 (360)
..+..+|||+|||+|.++..+++.+ |+.+++++|. +.+++.+ +...+++++.+|+.+. .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 5689999999 7655543 3357899999999762 23 59999965
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.. ..+....++++++++|+| ||++++. .......... . ......+++.++ +++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~---~--------------~~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTK---E--------------PEQVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTS---C--------------HHHHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCC---C--------------hhhhhHHHHHHH-Hhh-
Confidence 43 222334559999999999 9999887 2221111000 0 001135677777 777
Q ss_pred CceeEEEeeCCc---eeEEEEeC
Q 018116 341 FTHYKITNVFGL---KSLIEVYP 360 (360)
Q Consensus 341 f~~~~~~~~~~~---~~vi~~~~ 360 (360)
|++++...+..+ ..++.+++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred ceeeeEeccCcccCCCEEEEEEe
Confidence 999998888554 66666654
No 124
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.32 E-value=5.6e-12 Score=107.07 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=82.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-C-C-CccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y-I-P-PADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~-~-p-~~D~i~~ 259 (360)
..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ .++++++.+|+.+ + . + .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4667899999999999999999986 6779999999 888887764 2689999999865 2 2 2 5999998
Q ss_pred cccccc-------CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 KLVFHA-------FGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ~~~lh~-------~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
...+.. ...++..++++++.++|+| ||++++......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~ 143 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGG 143 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBT
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCC
Confidence 765511 1233456799999999999 999998775443
No 125
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.31 E-value=1.2e-11 Score=104.02 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=93.0
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CCC
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IPP 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p~ 253 (360)
++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .+++++..+|+.+. .+.
T Consensus 25 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 344444 5677899999999999999999886 79999999 888877663 26899999998662 246
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++..++++ ...+++++.++|+| ||.+++..... .+..++.
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~~----------------------------~~~~~~~ 144 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAILL----------------------------ETKFEAM 144 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECBH----------------------------HHHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecCc----------------------------chHHHHH
Confidence 999999887764 35789999999999 89888865321 0245778
Q ss_pred HHHHHCCCce
Q 018116 334 TLFLDAGFTH 343 (360)
Q Consensus 334 ~ll~~aGf~~ 343 (360)
+++++.||.+
T Consensus 145 ~~l~~~g~~~ 154 (192)
T 1l3i_A 145 ECLRDLGFDV 154 (192)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHCCCce
Confidence 8899999943
No 126
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.31 E-value=5.6e-12 Score=112.80 Aligned_cols=95 Identities=14% Similarity=0.218 Sum_probs=79.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCCccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIPPADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p~~D~i~~~~~lh 264 (360)
..++.+|||||||+|.++..++.+.++.+++++|+ +.+++.|++ .++++|+.+|+.+ +..+||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 67889999999999988776667778999999999 999998874 3799999999976 4346999998654
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+ +..++++++++.|+| ||+|++.+
T Consensus 198 -~~--d~~~~l~el~r~LkP---GG~Lvv~~ 222 (298)
T 3fpf_A 198 -AE--PKRRVFRNIHRYVDT---ETRIIYRT 222 (298)
T ss_dssp -CS--CHHHHHHHHHHHCCT---TCEEEEEE
T ss_pred -cc--CHHHHHHHHHHHcCC---CcEEEEEc
Confidence 23 346889999999999 99999876
No 127
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.31 E-value=2.4e-11 Score=105.61 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=95.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHH----hcCCCCCCeEEEeCCCCCC-----C-CCccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAV----ANMPQTENLKYIAGDMFQY-----I-PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~----~~a~~~~ri~~~~~D~~~~-----~-p~~D~i~~~ 260 (360)
+.++.+|||+|||+|.++..+++.. |..+++++|+ +.++ +.+++..++.++.+|+..+ . ..||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5678999999999999999999864 6889999999 7664 3333357899999998762 1 259999876
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
... ++ +...+++.+++.|+| ||+|++....... |... ......++....|+++|
T Consensus 154 ~a~---~~-~~~il~~~~~~~Lkp---GG~lvisik~~~~--------------d~t~-----~~~e~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVIKARSI--------------DVTK-----DPKEIYKTEVEKLENSN 207 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEE---EEEEEEEEC---------------------C-----CSSSSTTHHHHHHHHTT
T ss_pred CCC---hh-HHHHHHHHHHHhCCC---CeEEEEEEccCCc--------------ccCC-----CHHHHHHHHHHHHHHCC
Confidence 432 22 233345566679999 9999987322111 1100 01112234556778899
Q ss_pred CceeEEEeeCC---ceeEEEEe
Q 018116 341 FTHYKITNVFG---LKSLIEVY 359 (360)
Q Consensus 341 f~~~~~~~~~~---~~~vi~~~ 359 (360)
|++.+...+.. .+.++.++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEE
T ss_pred CEEEEEeccCCCcCceEEEEEE
Confidence 99999988844 46666665
No 128
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.30 E-value=1.2e-11 Score=109.59 Aligned_cols=124 Identities=16% Similarity=0.210 Sum_probs=96.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC--CCccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI--PPADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~--p~~D~i~~~~~lh 264 (360)
..+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ...+++..+|+.+.. ..||+|+++...|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999888754 9999999 888887764 112899999986643 3699999865443
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCcee
Q 018116 265 AFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHY 344 (360)
Q Consensus 265 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 344 (360)
....+++++++.|+| ||++++.+.... +.+++.++++++||+++
T Consensus 196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred -----HHHHHHHHHHHHcCC---CCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEE
Confidence 356789999999999 999988654321 35788999999999999
Q ss_pred EEEeeCCcee
Q 018116 345 KITNVFGLKS 354 (360)
Q Consensus 345 ~~~~~~~~~~ 354 (360)
++....+-.+
T Consensus 240 ~~~~~~~W~~ 249 (254)
T 2nxc_A 240 EEAAEGEWVL 249 (254)
T ss_dssp EEEEETTEEE
T ss_pred EEeccCCeEE
Confidence 8877655443
No 129
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.30 E-value=2.1e-11 Score=108.27 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=94.4
Q ss_pred cC-CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC--CccEEE
Q 018116 193 FE-GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---IP--PADAYF 258 (360)
Q Consensus 193 ~~-~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~p--~~D~i~ 258 (360)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.+++ .++++++.+|+.+. .+ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999998765 9999999 888887764 45899999999772 22 599999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhc
Q 018116 259 FKLVFHAF------------------GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSV 320 (360)
Q Consensus 259 ~~~~lh~~------------------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 320 (360)
++-.++.. .......+++.+.++|+| ||+++++. +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~---~~-------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVH---RP-------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEE---CT--------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEE---cH--------------------
Confidence 96443322 113356799999999999 89988832 11
Q ss_pred ccCCcccCHHHHHHHHHHCCCceeEEEee
Q 018116 321 SVDGKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 321 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....++.+++++.||...++.++
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEe
Confidence 13456778889999998887766
No 130
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.29 E-value=3.1e-12 Score=114.74 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=93.5
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC----C---CCeEEEeCCCCCCCC--C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ----T---ENLKYIAGDMFQYIP--P 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~ri~~~~~D~~~~~p--~ 253 (360)
++..++ ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++ . ++++++.+|+.++.+ .
T Consensus 102 ~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 102 IIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp ----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 344444 567789999999999999999998 78899999999 888876653 2 589999999988554 4
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHH
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWK 333 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 333 (360)
||+|++ ++++. .++|+++.++|+| ||++++...... ..+++.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~----------------------------~~~~~~ 221 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNFD----------------------------QSEKTV 221 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSHH----------------------------HHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHHH
Confidence 999997 34544 3689999999999 999988763210 124556
Q ss_pred HHHHHCCCceeEEEe
Q 018116 334 TLFLDAGFTHYKITN 348 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~ 348 (360)
+.++++||..+++..
T Consensus 222 ~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 222 LSLSASGMHHLETVE 236 (275)
T ss_dssp HHSGGGTEEEEEEEE
T ss_pred HHHHHCCCeEEEEEE
Confidence 667778888777655
No 131
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.29 E-value=6.1e-12 Score=114.30 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=100.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-------CeEEEeCCCCC---------CCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TE-------NLKYIAGDMFQ---------YIP 252 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-------ri~~~~~D~~~---------~~p 252 (360)
+..+|||||||+|..+..+++. ...+++|+|+ +.+++.|++ .. +++|...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877766654 3568999999 999998874 11 26788888722 123
Q ss_pred --CccEEEeccccccC-ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcch---------h--hhh-HhHh----
Q 018116 253 --PADAYFFKLVFHAF-GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKH---------Q--VTE-AKLL---- 313 (360)
Q Consensus 253 --~~D~i~~~~~lh~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~---------~--~~~-~~~~---- 313 (360)
.||+|++..++|+. ++++..++|++++++|+| ||.+++..+......... . ... +...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 59999999999984 545567999999999999 999988765322110000 0 000 0000
Q ss_pred hhhh-hhcccC------CcccCHHHHHHHHHHCCCceeEEEee
Q 018116 314 GDTL-MSVSVD------GKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 314 ~d~~-~~~~~~------g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.+.. .....+ -...+.+++.++++++||++++....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 0000 000001 12457899999999999999888654
No 132
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.29 E-value=1.6e-11 Score=108.67 Aligned_cols=126 Identities=12% Similarity=0.165 Sum_probs=97.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p-- 252 (360)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .+++++..+|+.+.++
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 3444455 567889999999999999999999 78999999999 888887764 4669999999987654
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
.||+|++ +.++. ..+++++.++|+| ||++++...... ...++
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~ 203 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCSN----------------------------QVMRL 203 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCHH----------------------------HHHHH
Confidence 4999987 34443 3679999999999 999988653210 23456
Q ss_pred HHHHHHCC--CceeEEEee
Q 018116 333 KTLFLDAG--FTHYKITNV 349 (360)
Q Consensus 333 ~~ll~~aG--f~~~~~~~~ 349 (360)
.+.+++.| |..+++...
T Consensus 204 ~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 204 HEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHcCCCccccEEEEE
Confidence 77888888 887776544
No 133
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.29 E-value=5.5e-12 Score=104.79 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=94.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-CC-CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-IP-PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~p-~~D~i~~~~~l 263 (360)
.+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++ ..++++ .|.... .+ .||+|++..++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 5688999999999999999999999999999999 999988774 224555 666553 33 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
|++ ++ ....+.++.+.|+| ||.++-++.-.-..+.. .| ...-...|++.+ ...+.+
T Consensus 126 HlL-~~-~~~al~~v~~~L~p---ggvfISfptksl~Gr~~------------gm------~~~Y~~~~~~~~-~~~~~~ 181 (200)
T 3fzg_A 126 PVL-KQ-QDVNILDFLQLFHT---QNFVISFPIKSLSGKEK------------GM------EENYQLWFESFT-KGWIKI 181 (200)
T ss_dssp HHH-HH-TTCCHHHHHHTCEE---EEEEEEEECCCCC--CT------------TC------CCCHHHHHHHHT-TTTSCE
T ss_pred Hhh-hh-hHHHHHHHHHHhCC---CCEEEEeChHHhcCCCc------------ch------hhhHHHHHHHhc-cCccee
Confidence 999 43 34556699999999 65555544111111100 00 112345666666 556777
Q ss_pred eEEEeeCCcee
Q 018116 344 YKITNVFGLKS 354 (360)
Q Consensus 344 ~~~~~~~~~~~ 354 (360)
++...+++-..
T Consensus 182 ~~~~~~~nEl~ 192 (200)
T 3fzg_A 182 LDSKVIGNELV 192 (200)
T ss_dssp EEEEEETTEEE
T ss_pred eeeeeeCceEE
Confidence 77777766433
No 134
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.28 E-value=9.3e-12 Score=106.51 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC--CCccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI--PPADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~--p~~D~i~~~~~lh~ 265 (360)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..++++..+|+.+.. ..||+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 467999999999999999999999999999999 888877653 245999999998743 36999997542 2
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
....++++++++|+| ||.+++.
T Consensus 143 ----~~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp ----SHHHHHHHHTTSEEE---EEEEEEE
T ss_pred ----CHHHHHHHHHHhcCC---CcEEEEE
Confidence 235789999999999 8888885
No 135
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.28 E-value=2.3e-11 Score=106.00 Aligned_cols=130 Identities=11% Similarity=0.079 Sum_probs=100.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---CccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP---PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p---~~D~i~~~~ 261 (360)
..++.+|||||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|++..+|.++..+ .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 35678999999999999999999988889999999 888888764 4689999999988543 399998765
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+ .-+-...+|....+.|++ +++|++.-. .....++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~L~~---~~~lIlq~~------------------------------~~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 99 M----GGTLIRTILEEGAAKLAG---VTKLILQPN------------------------------IAAWQLREWSEQNNW 141 (244)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEES------------------------------SCHHHHHHHHHHHTE
T ss_pred C----chHHHHHHHHHHHHHhCC---CCEEEEEcC------------------------------CChHHHHHHHHHCCC
Confidence 4 445577899999999998 788777321 135678899999999
Q ss_pred ceeEEEee--CC-ceeEEEEe
Q 018116 342 THYKITNV--FG-LKSLIEVY 359 (360)
Q Consensus 342 ~~~~~~~~--~~-~~~vi~~~ 359 (360)
.+++-.-+ .+ ++.+|.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98665544 22 34455553
No 136
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.28 E-value=5.4e-12 Score=111.47 Aligned_cols=121 Identities=12% Similarity=0.014 Sum_probs=93.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-----CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI-----PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~-----p~~D~i~~~ 260 (360)
.+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999999 888887764 3469999999866 32 359999986
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 340 (360)
.+- + ...+++.+.+.|+| ||++++..... ... ...++...++..|
T Consensus 159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~~g~~----~~~----------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEV---GGAAVAMKGPR----VEE----------------------ELAPLPPALERLG 203 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEE---EEEEEEEECSC----CHH----------------------HHTTHHHHHHHHT
T ss_pred CcC----C--HHHHHHHHHHHcCC---CeEEEEEeCCC----cHH----------------------HHHHHHHHHHHcC
Confidence 542 2 35789999999999 99988755211 000 1234566777889
Q ss_pred CceeEEEee
Q 018116 341 FTHYKITNV 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|...++.++
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 998888766
No 137
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.27 E-value=9.9e-12 Score=116.22 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=85.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCCC-
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQYIP- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~~p- 252 (360)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++|..+|+.++.+
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 3455555 34558999999999999999999999999999999 888887764 1268899999988655
Q ss_pred -CccEEEecccccc---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 -PADAYFFKLVFHA---FGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 -~~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||+|++...+|+ .++....++++++.++|+| ||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 5999999988885 3445556899999999999 99998864
No 138
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.27 E-value=1.8e-11 Score=111.41 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=94.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC-C---CC-CccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ-Y---IP-PADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~-~---~p-~~D~i 257 (360)
....+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|+.+ . .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999999 888876653 4789999999866 1 12 59999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHH
Q 018116 258 FFKLVFHAFGDEDC--LKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTL 335 (360)
Q Consensus 258 ~~~~~lh~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l 335 (360)
++....++.+.... .+++++++++|+| ||.+++..... .. ......++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~~--------------~~----------~~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGESI--------------WL----------DLELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECCT--------------TT----------CHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCCc--------------cc----------chHHHHHHHHH
Confidence 99766665544322 5789999999999 88888753210 00 01145788899
Q ss_pred HHHCCCceeEEEee
Q 018116 336 FLDAGFTHYKITNV 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
++++||..+++...
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887654
No 139
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.26 E-value=5.2e-12 Score=116.97 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=88.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-Ccc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP-PAD 255 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p-~~D 255 (360)
..+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ...++++.+|+.+..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 34455553 23467999999999999999999999999999999 888887764 3347788999877433 699
Q ss_pred EEEecccccc---CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 256 AYFFKLVFHA---FGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 256 ~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+|++..++|+ .+.+...+++++++++|+| ||.+++...
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 9999999986 2455678999999999999 999998764
No 140
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.24 E-value=5.5e-11 Score=99.23 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=92.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--Cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--PA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--~~ 254 (360)
.++..+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++ .++++++.+|+.++.+ .|
T Consensus 26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 3444444 55678999999999999999998 7889999999 888887764 2689999999877443 69
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKT 334 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 334 (360)
|+|++..+ .....+++++++. | ||.+++...... +..++.+
T Consensus 102 D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~~----------------------------~~~~~~~ 142 (183)
T 2yxd_A 102 NKAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVLE----------------------------NAAKIIN 142 (183)
T ss_dssp SEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCHH----------------------------HHHHHHH
T ss_pred cEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecccc----------------------------cHHHHHH
Confidence 99999887 2345789999888 8 899988663210 2356778
Q ss_pred HHHHCCCceeEE
Q 018116 335 LFLDAGFTHYKI 346 (360)
Q Consensus 335 ll~~aGf~~~~~ 346 (360)
.+++.||.+..+
T Consensus 143 ~l~~~g~~~~~~ 154 (183)
T 2yxd_A 143 EFESRGYNVDAV 154 (183)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEE
Confidence 899999876554
No 141
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.23 E-value=1.4e-11 Score=109.47 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=98.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--CccEEEeccccccCChhH
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDED 270 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~~ 270 (360)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +.+ .||+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 6789999999999999999987 679999999 8888877641111388899876 443 59999998877777443
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcc----hhhhhHhHhhhhhhhcc------cCCcccCHHHHHHHHHHCC
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDIVINEKEDK----HQVTEAKLLGDTLMSVS------VDGKERTDEEWKTLFLDAG 340 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~----~~~~~~~~~~d~~~~~~------~~g~~~t~~e~~~ll~~aG 340 (360)
..++|++++++|+| ||++++........... ..+.............. .....++.+++.++ +|
T Consensus 131 ~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---aG 204 (260)
T 2avn_A 131 KDKAFSEIRRVLVP---DGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---EG 204 (260)
T ss_dssp HHHHHHHHHHHEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---TT
T ss_pred HHHHHHHHHHHcCC---CeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---cC
Confidence 57899999999999 89998876543210000 00000000000000000 00114578888777 99
Q ss_pred CceeEEEeeCC
Q 018116 341 FTHYKITNVFG 351 (360)
Q Consensus 341 f~~~~~~~~~~ 351 (360)
|+++++....+
T Consensus 205 f~~~~~~~~~~ 215 (260)
T 2avn_A 205 FETVDIRGIGV 215 (260)
T ss_dssp EEEEEEEEECS
T ss_pred ceEEEEECCCC
Confidence 99998887643
No 142
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.23 E-value=8.8e-11 Score=105.42 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=93.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C-CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-P-PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-p-~~D~i~~~~~ 262 (360)
..++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+.. + .||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 346789999999999999999998766 8999999 888887763 456999999998833 3 5999988533
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
. ...++++++.++|+| ||.+++.+....... .....+++.+.++++||.
T Consensus 202 ~------~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred h------hHHHHHHHHHHHCCC---CeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCe
Confidence 1 224679999999999 899888776532110 112567888999999998
Q ss_pred eeE
Q 018116 343 HYK 345 (360)
Q Consensus 343 ~~~ 345 (360)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
No 143
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.23 E-value=6e-11 Score=105.44 Aligned_cols=99 Identities=10% Similarity=0.212 Sum_probs=77.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC--------CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY--------IP- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~--------~p- 252 (360)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 34678999999999999999999999999999999 888876543 13699999999764 22
Q ss_pred -CccEEEeccccc----------------cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 253 -PADAYFFKLVFH----------------AFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 253 -~~D~i~~~~~lh----------------~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.||+|+++-..+ |........+++.+.++|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 599999973322 22223356889999999999 8998874
No 144
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.22 E-value=1.7e-11 Score=102.18 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=87.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CC---C--CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YI---P--PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~---p--~~D~i~~~~~l 263 (360)
..++.+|||||||. +.+|. +.+++.+++ ..+++++.+|+.+ +. + .||+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999996 23888 888887764 3469999999976 33 4 49999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 264 HAF-GDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 264 h~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
||+ ++. .++|++++++|+| ||++++.+........ ....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVDN-------------------NSKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSCS-------------------SSSSCCHHHHHHHHHHTTC-
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccccccc-------------------ccccCCHHHHHHHHHHCCC-
Confidence 998 554 5789999999999 9999996654322100 1224588999999999999
Q ss_pred eeEEEe
Q 018116 343 HYKITN 348 (360)
Q Consensus 343 ~~~~~~ 348 (360)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 43 443
No 145
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.22 E-value=1.3e-11 Score=106.68 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CC--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY----IP--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~----~p--~~D~i~~~~ 261 (360)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .+|.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999999 888877653 35799999997652 33 599998875
Q ss_pred ccccCChhHH------HHHHHHHHHhccCCCCCcEEEEEe
Q 018116 262 VFHAFGDEDC------LKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 262 ~lh~~~~~~~------~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...+...... ..+++.++++|+| ||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 4432222211 2489999999999 89888755
No 146
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.22 E-value=3.3e-11 Score=113.91 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=86.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcC-------CC--------CCCeEEEeCCC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANM-------PQ--------TENLKYIAGDM 247 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~ri~~~~~D~ 247 (360)
.+++.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| +. ..+++++.+|.
T Consensus 233 ~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 233 DVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3445555 56788999999999999999999888779999999 8777666 32 26899998765
Q ss_pred CC-C------CCCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 248 FQ-Y------IPPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 248 ~~-~------~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
+. + ...||+|++.++++ . ++....|+++.+.|+| ||+|++.+.+.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 43 2 23599999887773 2 3456789999999999 99999998776654
No 147
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.22 E-value=3.6e-11 Score=103.60 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CccEEEeccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP--PADAYFFKLV 262 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p--~~D~i~~~~~ 262 (360)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 567999999999999999999999999999999 888887753 3679999999876 2 33 5999887543
Q ss_pred cccCChhH------HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 263 FHAFGDED------CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 263 lh~~~~~~------~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..+..... ...+|++++++|+| ||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 32111100 24789999999999 99988754
No 148
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.20 E-value=2.5e-11 Score=112.54 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=84.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-Cc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-PA 254 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~ 254 (360)
.+++.+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .|
T Consensus 41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 3444444 456789999999999999988875 5679999999446665542 3789999999987 444 59
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
|+|++..+++|+..+.....+.+++++|+| ||.+++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 999999999998877778889999999999 8888743
No 149
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.20 E-value=1e-10 Score=101.30 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=79.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-----CCcc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I-----PPAD 255 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~-----p~~D 255 (360)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|+.+. . ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 35678999999999999999999998 889999999 888877653 46799999998652 1 3599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
+|++... ......+++++.+.|+| ||.+++.+....
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9987543 33456789999999999 897777665543
No 150
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.19 E-value=4.9e-11 Score=102.27 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=80.3
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CCc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---PPA 254 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p~~ 254 (360)
++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++..+|+.+.. ..|
T Consensus 69 ~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 344444 567889999999999999999998 689999999 888887764 357999999997733 259
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|+|++..++|++++ ++.+.|+| ||++++....
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhccc---CcEEEEEEcC
Confidence 99999999999886 46788999 8988886543
No 151
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.19 E-value=5.8e-11 Score=105.08 Aligned_cols=125 Identities=15% Similarity=0.166 Sum_probs=95.9
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-CC-
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-IP- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-~p- 252 (360)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .+++++..+|+.+. ++
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4455555 667889999999999999999998 67899999999 888877653 26899999999774 55
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
.||+|++ ++++. ..+|+++.++|+| ||++++...... ...+
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 206 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNIT----------------------------QVLE 206 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCHH----------------------------HHHH
Confidence 4999997 34443 3679999999999 999998763210 1235
Q ss_pred HHHHHHHCCCceeEEEe
Q 018116 332 WKTLFLDAGFTHYKITN 348 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~ 348 (360)
+.+.++++||..+++..
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 55667778888776654
No 152
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.19 E-value=5.3e-11 Score=102.45 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=81.0
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP---P 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p---~ 253 (360)
++..+. ..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++ .+++++..+|+....+ .
T Consensus 69 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 69 MCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 344444 5677899999999999999999987 6689999999 888887764 3579999999866433 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
||+|++..++|++++ ++.+.|+| ||++++...
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred eeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 999999999998874 67888999 899888654
No 153
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.18 E-value=4.8e-11 Score=106.87 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=94.7
Q ss_pred HHHHhhhhc-CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhc-CCCCCCeEEEe-CCCCC----CCC--Cc
Q 018116 185 VKDCCRKIF-EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVAN-MPQTENLKYIA-GDMFQ----YIP--PA 254 (360)
Q Consensus 185 ~~~~~~~~~-~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~ri~~~~-~D~~~----~~p--~~ 254 (360)
++..+. . .++.+|||||||+|.++..+++. +..+++++|+ +.|++. ++...++.... .|+.. .+| .|
T Consensus 76 ~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 76 ALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 445554 3 35679999999999999988886 4569999999 888877 33356665443 34422 133 39
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCc-------cc
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGK-------ER 327 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~-------~~ 327 (360)
|++++..++|++ ..+|.+++++|+| ||+++++. -|.-.... ...+ .+|. .+
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~~------~~~~------~~G~vrd~~~~~~ 210 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILVD---GGQVVALV--KPQFEAGR------EQIG------KNGIVRESSIHEK 210 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CGGGTSCG------GGCC-------CCCCCCHHHHHH
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEE--CcccccCh------hhcC------CCCccCCHHHHHH
Confidence 999998888755 4679999999999 99998852 11110000 0000 0122 23
Q ss_pred CHHHHHHHHHHCCCceeEEEee
Q 018116 328 TDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
+.+++.++++++||.+..+..-
T Consensus 211 ~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 211 VLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEEC
Confidence 6788999999999998877554
No 154
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.18 E-value=1.2e-10 Score=98.13 Aligned_cols=100 Identities=10% Similarity=0.056 Sum_probs=80.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C--CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I--PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~--p~~D~i~~~~ 261 (360)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 46789999999999999987774 5668999999 899888764 35899999998762 2 3699999987
Q ss_pred ccccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 018116 262 VFHAFGDEDCLKILKKCRE--AIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~e~~~ 298 (360)
.+|+ ..++..++++.+.+ +|+| ||.+++.....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERATT 156 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence 7664 34556789999999 9999 89888866543
No 155
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.18 E-value=3.2e-11 Score=116.24 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=85.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-P 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~ 253 (360)
..+++.+. ..+..+|||||||+|.++..+++ .+..+++++|+..+++.+++ .++|+++.+|+.+ +.+ .
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 44555554 45678999999999999998887 57789999999447766653 3789999999987 555 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
||+|++..+++++.+++....+.+++++|+| ||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 9999998888888877778889999999999 888874
No 156
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.18 E-value=1.1e-10 Score=96.75 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=78.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-C--------CC--CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDLPHAVANMPQTENLKYIAGDMFQ-Y--------IP--PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~-~--------~p--~~D~i~~~ 260 (360)
..+..+|||+|||+|.++..+++.+ |+.+++++|+..+++ ..++++..+|+.+ + .+ .||+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 3567899999999999999999985 678999999943433 2689999999987 3 44 59999999
Q ss_pred cccccCChhH---------HHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 261 LVFHAFGDED---------CLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 261 ~~lh~~~~~~---------~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
..+|+..... ..++++++.++|+| ||.+++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~ 138 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQ 138 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence 8888765431 15789999999999 8998886643
No 157
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.17 E-value=3.9e-11 Score=104.26 Aligned_cols=136 Identities=7% Similarity=-0.007 Sum_probs=100.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP--PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p--~~D~i~~~~~lh~ 265 (360)
....+|||||||+|-++..+....|..+++++|+ +.+++.++. ..+.++...|.....| .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 999887764 5668999999987433 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYK 345 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+.+++....+ ++.++|+| +|.++-++.-.-..... .++ ..-...|.+.+.+.|+. ++
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~ksl~Grs~--------gm~----------~~Y~~~~e~~~~~~g~~-~~ 267 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFPTKSLGQRSK--------GMF----------QNYSQSFESQARERSCR-IQ 267 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEECC---------------CHH----------HHHHHHHHHHHHHHTCC-EE
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEeccchhhcCCCc--------chh----------hHHHHHHHHHHHhcCCc-ee
Confidence 9988766677 89999999 55555444311111110 000 11357888999999994 44
Q ss_pred EEeeCCc
Q 018116 346 ITNVFGL 352 (360)
Q Consensus 346 ~~~~~~~ 352 (360)
...+++-
T Consensus 268 ~~~~~nE 274 (281)
T 3lcv_B 268 RLEIGNE 274 (281)
T ss_dssp EEEETTE
T ss_pred eeeecCe
Confidence 4455554
No 158
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=4.3e-11 Score=105.62 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=80.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CC---CCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YI---PPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~---p~~D~i 257 (360)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ .. ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999998 899999999 888887763 4689999999865 12 269999
Q ss_pred EeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 258 FFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 258 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
++.. +......+++++.++|+| ||.|++.+....
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 8754 344456789999999999 898877665543
No 159
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.17 E-value=4.2e-11 Score=105.75 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=80.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHH--CCCCeEEEeec-hHHHhcCCC---CC-------C----------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA--FPGIKCTVLDL-PHAVANMPQ---TE-------N---------------------- 239 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~-------r---------------------- 239 (360)
+..+|||+|||+|.++..+++. ++..+++++|+ +.+++.++. .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999998 78889999999 999887763 22 2
Q ss_pred ---eE-------------EEeCCCCCCC------C--CccEEEeccccccCCh-------hHHHHHHHHHHHhccCCCCC
Q 018116 240 ---LK-------------YIAGDMFQYI------P--PADAYFFKLVFHAFGD-------EDCLKILKKCREAIAGNGER 288 (360)
Q Consensus 240 ---i~-------------~~~~D~~~~~------p--~~D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~g 288 (360)
++ |..+|+++.. + .||+|++...+++..+ +...+++++++++|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 67 9999998843 3 5999999876665443 5567899999999999 9
Q ss_pred cEEEEEee
Q 018116 289 GKVLIMDI 296 (360)
Q Consensus 289 G~lli~e~ 296 (360)
|+++++..
T Consensus 208 G~l~~~~~ 215 (250)
T 1o9g_A 208 AVIAVTDR 215 (250)
T ss_dssp CEEEEEES
T ss_pred cEEEEeCc
Confidence 99988543
No 160
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.16 E-value=1.1e-10 Score=102.53 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=80.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C------CCcc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I------PPAD 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~------p~~D 255 (360)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ + . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4578999999999999999999986 889999999 888877764 4689999999865 2 2 4699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
+|++... ......+++++.++|+| ||.|++-+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence 9987543 34456789999999999 8888876666544
No 161
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.16 E-value=1.3e-10 Score=101.78 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=77.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHH----CCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC--C---C--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA----FPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQY--I---P--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~--~---p--~~D~i~~~~ 261 (360)
+..+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++.+|+.+. . + .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4579999999999999999998 68899999999 888888764 57899999999762 1 2 499998755
Q ss_pred ccccCChhHHHHHHHHHHH-hccCCCCCcEEEEEee
Q 018116 262 VFHAFGDEDCLKILKKCRE-AIAGNGERGKVLIMDI 296 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~-~L~p~~~gG~lli~e~ 296 (360)
. |. +..++|+++.+ .|+| ||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 4 42 34678999997 9999 999988665
No 162
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.15 E-value=4.5e-11 Score=104.39 Aligned_cols=99 Identities=14% Similarity=0.250 Sum_probs=79.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-----CCccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-----PPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-----p~~D~i~~ 259 (360)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34678999999999999999999889999999999 888887764 358999999997732 35999986
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
... ......+++++.+.|+| ||.|++-+....
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~~ 180 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLYH 180 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTGG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCcC
Confidence 532 33356789999999999 888877555443
No 163
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.15 E-value=1e-10 Score=102.31 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=74.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEeCCCCC--C--CC--Cc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------QTENLKYIAGDMFQ--Y--IP--PA 254 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~ri~~~~~D~~~--~--~p--~~ 254 (360)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+ ...+++++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999999999999999 88876542 24689999999976 2 33 59
Q ss_pred cEEEeccccccCChh--H----HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 255 DAYFFKLVFHAFGDE--D----CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 255 D~i~~~~~lh~~~~~--~----~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
|.|++...-.+.... . ...+|++++++|+| ||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 998864332211100 0 13689999999999 89988764
No 164
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.15 E-value=1.3e-10 Score=108.83 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=81.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-CC--CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY-IP--PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~-~p--~~D~i~~~~~lh~ 265 (360)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+. .+ .||+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 679999999 888887764 33589999999883 33 6999999999987
Q ss_pred ---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 266 ---FGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 266 ---~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
...+...++++++++.|+| ||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3456677899999999999 89988864
No 165
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.15 E-value=1.1e-10 Score=104.99 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-Cc---cEEEec-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP-PA---DAYFFK- 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p-~~---D~i~~~- 260 (360)
.+..+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++ .++++|+.+|++++.+ .| |+|+++
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 200 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence 35679999999999999999999 9999999999 899887764 3479999999988543 58 999986
Q ss_pred -----------cccccCChh------HHHHHHHHHH-HhccCCCCCcEEEE
Q 018116 261 -----------LVFHAFGDE------DCLKILKKCR-EAIAGNGERGKVLI 293 (360)
Q Consensus 261 -----------~~lh~~~~~------~~~~~L~~~~-~~L~p~~~gG~lli 293 (360)
.+. |.+.. +-..+++++. +.|+| ||.+++
T Consensus 201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 233 22221 1126899999 99999 888876
No 166
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.15 E-value=6.9e-11 Score=106.01 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=81.5
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p-- 252 (360)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .+++++..+|+.+.++
T Consensus 103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 4455555 667889999999999999999999 67899999999 888887764 2589999999977544
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.||+|++. .++. ..+|+++.++|+| ||++++.+.
T Consensus 181 ~~D~V~~~-----~~~~--~~~l~~~~~~L~p---gG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFLD-----VPDP--WNYIDKCWEALKG---GGRFATVCP 214 (277)
T ss_dssp SEEEEEEC-----CSCG--GGTHHHHHHHEEE---EEEEEEEES
T ss_pred ccCEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeC
Confidence 59999972 3433 3679999999999 899988763
No 167
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.14 E-value=4.4e-10 Score=95.50 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=77.3
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC--CCeEEEeechHHHhcCCCCCCeEEEeCCCCC-C-----------
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP--GIKCTVLDLPHAVANMPQTENLKYIAGDMFQ-Y----------- 250 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~-~----------- 250 (360)
+.+.+. .+.+..+|||||||+|.++..+++++| +.+++++|+.++. ..++++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccc
Confidence 344443 135678999999999999999999998 6899999994421 24679999999976 3
Q ss_pred --------------CC--CccEEEeccccccCC----hhH-----HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 251 --------------IP--PADAYFFKLVFHAFG----DED-----CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 251 --------------~p--~~D~i~~~~~lh~~~----~~~-----~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++ .||+|++...+|+.. +.. ..++|++++++|+| ||++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 23 599999988777532 211 12489999999999 88887743
No 168
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.14 E-value=1.3e-10 Score=101.10 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=80.1
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCC---CCcc
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQYI---PPAD 255 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~~---p~~D 255 (360)
.++..+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+.. ..||
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 3444444 5677899999999999999999985 79999999 888887764 228999999997633 2599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+|++..++|++++ ++.+.|+| ||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEcC
Confidence 9999999998875 47788999 8999887643
No 169
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.14 E-value=4.5e-11 Score=103.56 Aligned_cols=99 Identities=13% Similarity=0.210 Sum_probs=78.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CC------CCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YI------PPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~------p~~ 254 (360)
..+..+|||||||+|..+..+++.++ +.+++++|+ +.+++.+++ .++++++.+|+.+ .. ..|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34678999999999999999999875 889999999 888887764 3579999999744 12 359
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|+|++....+++.+ ..++++.+ ++|+| ||.|++.+..
T Consensus 136 D~V~~d~~~~~~~~--~~~~~~~~-~~Lkp---gG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRK---GTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHH--HHHHHHHT-TCCCT---TCEEEESCCC
T ss_pred EEEEEcCCcccchH--HHHHHHhc-cccCC---CeEEEEeCCC
Confidence 99999887776644 24567777 99999 8888775544
No 170
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.13 E-value=8.6e-11 Score=108.98 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=77.0
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..+..+|||||||+|.++..++++ +..+++++|..++++.+++ .++++++.+|+.+ +.| .||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 346789999999999999999987 6669999999557776653 4679999999987 555 5999999776
Q ss_pred cccC-ChhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 263 FHAF-GDEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 263 lh~~-~~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
.+++ ..+....+++.+.++|+| ||.++
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li 170 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIF 170 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence 5554 233456789999999999 88876
No 171
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.13 E-value=1.1e-10 Score=101.81 Aligned_cols=98 Identities=13% Similarity=0.262 Sum_probs=80.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---CCccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I---PPADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~---p~~D~i~ 258 (360)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34678999999999999999999999999999999 888887764 35899999998762 2 3599999
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
+....+ ....+|+++.++|+| ||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence 876643 346789999999999 88888865443
No 172
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.12 E-value=1.1e-10 Score=102.07 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=80.8
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP--- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p--- 252 (360)
..+++.+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..++++..+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 44455555 56778999999999999999999987 89999998 888887764 2469999999854443
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.||+|++..+++++++ ++.+.|+| ||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 4999999999998875 56788999 898888554
No 173
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.11 E-value=9.4e-11 Score=101.60 Aligned_cols=98 Identities=9% Similarity=0.099 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCcc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I------PPAD 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~D 255 (360)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|+.+. . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4568999999999999999999988 889999999 888877763 46799999998652 1 4699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
+|++.. +......+++++.++|+| ||.|++.+...+
T Consensus 143 ~v~~~~-----~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDA-----DKANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 998643 234456789999999999 888888776654
No 174
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.10 E-value=1.2e-10 Score=105.53 Aligned_cols=97 Identities=15% Similarity=0.253 Sum_probs=77.2
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC--CccEEEeccccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ---YIP--PADAYFFKLVFH 264 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~---~~p--~~D~i~~~~~lh 264 (360)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999999 999887763 4789999999865 233 599999854444
Q ss_pred cCChhH--HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 265 AFGDED--CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 265 ~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
...... ...+++.++++|+| ||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 322221 15789999999999 887776554
No 175
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.10 E-value=2e-10 Score=105.12 Aligned_cols=101 Identities=14% Similarity=0.255 Sum_probs=81.3
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---C
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI---P 252 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~---p 252 (360)
.++..+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++ ..+++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3444444 56788999999999999999999877 478999999 888887764 356999999997732 3
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 253 PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 253 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.||+|++..++|+++ +++.+.|+| ||++++....
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~~ 177 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPINL 177 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBCB
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEECC
Confidence 599999999999887 356778999 8998887543
No 176
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.09 E-value=5.9e-10 Score=100.19 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec--hHHHhcCCC------------C----CCeEEEeCCCCCC---C-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL--PHAVANMPQ------------T----ENLKYIAGDMFQY---I- 251 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~------------~----~ri~~~~~D~~~~---~- 251 (360)
.+..+|||||||+|.++..+++. ...+++++|+ +.+++.++. . +++++...|..+. .
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 46679999999999999988875 3348999999 566655432 1 4788886665431 1
Q ss_pred -----CCccEEEeccccccCChhHHHHHHHHHHHhcc---CCCCCcEEEEE
Q 018116 252 -----PPADAYFFKLVFHAFGDEDCLKILKKCREAIA---GNGERGKVLIM 294 (360)
Q Consensus 252 -----p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~---p~~~gG~lli~ 294 (360)
..||+|++..++||.++ ...+++.++++|+ | ++||+++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 35999999999987554 5678999999999 6 347887663
No 177
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.09 E-value=2.1e-10 Score=102.27 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=78.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCC--CccEEEeccccccCCh
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-YIP--PADAYFFKLVFHAFGD 268 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~ 268 (360)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.+..+|+.. +.+ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4678999999999999999999988899999999 888888765 5679999999876 443 59999986553
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..+++++++|+| ||++++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 248899999999 99999987654
No 178
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.08 E-value=1.5e-10 Score=100.97 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=86.4
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeC-CCC----CCCC--Ccc
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAG-DMF----QYIP--PAD 255 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~-D~~----~~~p--~~D 255 (360)
++..+. ......+|||||||+|.++..+++. ...+++++|+ +.+++.+.+ ..++..... ++. .+.+ .+|
T Consensus 28 ~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 105 (232)
T 3opn_A 28 ALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPS 105 (232)
T ss_dssp HHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCS
T ss_pred HHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCC
Confidence 344444 1234679999999999999999987 3349999999 888776543 344333211 111 1111 145
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcc-cCCcccCHHHHHH
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVS-VDGKERTDEEWKT 334 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~~t~~e~~~ 334 (360)
.+.+-.++.++ .++|++++++|+| ||++++.. .+. +........-.-... ......+.+++.+
T Consensus 106 ~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~l~~ 169 (232)
T 3opn_A 106 FTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEKVLK 169 (232)
T ss_dssp EEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHHHHH
T ss_pred EEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHHHHH
Confidence 54444444433 4689999999999 99998843 110 100000000000000 0001237789999
Q ss_pred HHHHCCCceeEEEee
Q 018116 335 LFLDAGFTHYKITNV 349 (360)
Q Consensus 335 ll~~aGf~~~~~~~~ 349 (360)
+++++||++..+...
T Consensus 170 ~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 170 TATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEEc
Confidence 999999998887654
No 179
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.07 E-value=1.6e-10 Score=108.18 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=79.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~l 263 (360)
..+..+|||||||+|.++..++++ ...+++++|...+++.+++ .++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 456789999999999999999987 3349999999766666553 4779999999977 454 69999997766
Q ss_pred ccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 264 HAFGD-EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 264 h~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|++.. .....+++.+.++|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 66543 3456789999999999 8888765543
No 180
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.07 E-value=2.2e-10 Score=105.63 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=78.7
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------CCCeEEEe
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ-----------------TENLKYIA 244 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~ri~~~~ 244 (360)
.++..+. ..++.+|||||||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.
T Consensus 96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 3455555 667889999999999999999998 47789999999 888877653 26899999
Q ss_pred CCCCCC---CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 245 GDMFQY---IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 245 ~D~~~~---~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+|+.+. ++ .||+|++.. +++ ..+++++.++|+| ||++++....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEEeCC
Confidence 999773 33 499999743 222 1368999999999 9999877653
No 181
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.06 E-value=1.7e-10 Score=101.60 Aligned_cols=94 Identities=20% Similarity=0.347 Sum_probs=73.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEeCCCCCC----CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------------TENLKYIAGDMFQY----IP- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~ri~~~~~D~~~~----~p- 252 (360)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34678999999999999999999999999999999 888765531 25799999999762 22
Q ss_pred -CccEEEeccccccCChhHH-----------HHHHHHHHHhccCCCCCcEEEEE
Q 018116 253 -PADAYFFKLVFHAFGDEDC-----------LKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~-----------~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.+|.|++. ++++.. ..+++++.++|+| ||.|++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 47777643 343321 3789999999999 8988884
No 182
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.06 E-value=1.6e-10 Score=95.38 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCC-------CCccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYI-------PPADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~-------p~~D~i~~~~ 261 (360)
+..+|||+|||+|.++..+++..+. ++++|+ +.+++.+++ ..+++++.+|+.+.. ..||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 6789999999999999999998654 999999 888887764 228999999986621 1599999987
Q ss_pred ccccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeee
Q 018116 262 VFHAFGDEDCLKILKKCR--EAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~e~~ 297 (360)
.+| -..+ .+++.+. ++|+| ||.+++....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPK 149 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEET
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCC
Confidence 776 2222 3455555 99999 8888775543
No 183
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.06 E-value=4.9e-10 Score=103.49 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=75.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..+..+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 456789999999999999998887 4569999999447776653 3789999999987 555 5999998774
Q ss_pred cccC-ChhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 263 FHAF-GDEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 263 lh~~-~~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
.+.+ .......+|+++.++|+| ||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 3332 233456789999999999 88876
No 184
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.06 E-value=2.2e-10 Score=106.14 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCC------CchHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CC--------CCccE
Q 018116 194 EGLGSIVDVGGG------NGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YI--------PPADA 256 (360)
Q Consensus 194 ~~~~~iLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~--------p~~D~ 256 (360)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+.. ..++++|+.+|+.+ ++ ..||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccE
Confidence 456899999999 77777777765 59999999999 77632 36799999999977 32 35999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|++. ..|+++ +..+.|++++++|+| ||.+++.|..
T Consensus 292 Visd-gsH~~~--d~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDD-GSHINA--HVRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEEC-SCCCHH--HHHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEEC-Ccccch--hHHHHHHHHHHhcCC---CeEEEEEecc
Confidence 9986 456554 356889999999999 8988888765
No 185
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.05 E-value=5.6e-10 Score=97.76 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=78.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C---------
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I--------- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~--------- 251 (360)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+ + .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34678999999999999999999987 789999999 888877663 2569999999755 1 1
Q ss_pred --------CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 252 --------PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 252 --------p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
..||+|++... .+....+++++.+.|+| ||.+++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence 45999998643 33456789999999999 88888866544
No 186
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.05 E-value=4.3e-10 Score=103.36 Aligned_cols=96 Identities=13% Similarity=0.165 Sum_probs=75.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
..+..+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.| .||+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345689999999999999988876 5569999999557766553 4689999999987 454 5999999866
Q ss_pred cccCC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 263 FHAFG-DEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 263 lh~~~-~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
.+++. ......+++.+.++|+| ||.++
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 142 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence 55543 33456789999999999 88876
No 187
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.04 E-value=2.8e-10 Score=102.73 Aligned_cols=99 Identities=13% Similarity=0.205 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC----CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYI----PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~----p~~D~i 257 (360)
....+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+.. ..||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999999877889999999 888876653 459999999987732 259999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVFHAFGDEDC--LKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~lh~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++...-+..+.... ..+++.++++|+| ||.+++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~Lkp---gG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCC---CCEEEEec
Confidence 98544332222222 5789999999999 88777754
No 188
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.04 E-value=9.6e-10 Score=94.69 Aligned_cols=95 Identities=7% Similarity=0.002 Sum_probs=78.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~ 265 (360)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.++. ..+..+...|... +.+ .||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 567899999999999998877 8999999999 999988764 5778899999987 444 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+.+++....+ ++.+.|++ ++++|.-+
T Consensus 181 LE~q~~~~~~-~ll~aL~~----~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT----PRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC----SEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC----CCEEEEcC
Confidence 9887766556 88889999 45555443
No 189
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.03 E-value=3.4e-10 Score=94.91 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=75.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-------CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-------IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-------~p~~D~i~ 258 (360)
.+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4678999999999999998887 45679999999 889887764 25799999998762 23699999
Q ss_pred eccccccCChhHHHHHHHHH--HHhccCCCCCcEEEEEeeec
Q 018116 259 FKLVFHAFGDEDCLKILKKC--REAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~e~~~ 298 (360)
+...++....+ ..++.+ .++|+| ||.+++.....
T Consensus 122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETDKT 157 (187)
T ss_dssp ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeCCc
Confidence 98775533333 445555 788999 88887765443
No 190
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.03 E-value=2.9e-10 Score=98.81 Aligned_cols=98 Identities=10% Similarity=0.169 Sum_probs=78.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------CCc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I------PPA 254 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~ 254 (360)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+. . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999887 789999999 888877653 36899999998551 1 469
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
|+|++... ......+++++.++|+| ||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 99998533 33456789999999999 88888766544
No 191
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.03 E-value=1.5e-10 Score=99.24 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=77.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CC-CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--YI-PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~~-p~~D~i~~~~ 261 (360)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3568999999999999999999988 889999999 888887763 3579999999865 22 2399998753
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
. ......+++++.++|+| ||.+++.+...
T Consensus 135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 2 23356789999999999 88887755544
No 192
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.03 E-value=1.9e-10 Score=99.58 Aligned_cols=94 Identities=9% Similarity=0.154 Sum_probs=74.9
Q ss_pred CEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCC---CC--CCccEEEecc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------T-ENLKYIAGDMFQ---YI--PPADAYFFKL 261 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~-~ri~~~~~D~~~---~~--p~~D~i~~~~ 261 (360)
.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ . ++++++.+|..+ .. ..||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4999999999999999999885 889999999 888887763 3 689999999865 23 2599998754
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.. .....+++++.+.|+| ||.|++.+...
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~ 166 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLADALL 166 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence 32 2345689999999999 78777744443
No 193
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.02 E-value=1.6e-10 Score=96.25 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=75.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-CCccEEEecc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY---I-PPADAYFFKL 261 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~---~-p~~D~i~~~~ 261 (360)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45689999999999999999987 6679999999 888887763 25799999998762 2 3599999876
Q ss_pred ccccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeeec
Q 018116 262 VFHAFGDEDCLKILKKCR--EAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~e~~~ 298 (360)
.++. .....+++.+. ++|+| ||.+++.....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDKT 141 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECCc
Confidence 6542 22345667776 88999 88887765543
No 194
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.01 E-value=3e-10 Score=96.88 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C--CCeEEEeCCCCC--CC---CC-ccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------T--ENLKYIAGDMFQ--YI---PP-ADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~ri~~~~~D~~~--~~---p~-~D~i~~ 259 (360)
+..+|||+|||+|.++..++.+. ..+++++|+ +.+++.+++ . ++++++.+|+.+ +. .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 46799999999999999877763 358999999 899887764 2 689999999865 21 36 999999
Q ss_pred ccccccCChhHHHHHHHHH--HHhccCCCCCcEEEEEeeec
Q 018116 260 KLVFHAFGDEDCLKILKKC--REAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~e~~~ 298 (360)
...+| .. ....+++.+ .++|+| ||.+++.....
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVETEKD 166 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEEEESS
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEEECCC
Confidence 87754 33 345678888 567999 88887765543
No 195
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.01 E-value=1.1e-09 Score=92.47 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=73.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC---------CeEEEeechHHHhcCCCCCCeEEE-eCCCCCC---------CC-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG---------IKCTVLDLPHAVANMPQTENLKYI-AGDMFQY---------IP- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~ri~~~-~~D~~~~---------~p- 252 (360)
+.+..+|||||||+|.++..+++.++. .+++++|+.++. ...+++++ .+|+... .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 356789999999999999999999865 899999994421 13578999 9998762 22
Q ss_pred -CccEEEecccccc----CChhH-----HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 253 -PADAYFFKLVFHA----FGDED-----CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 253 -~~D~i~~~~~lh~----~~~~~-----~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.||+|++...+|. ..+.. ..++++++.++|+| ||++++...
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 5999998654432 22221 14789999999999 899888654
No 196
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.00 E-value=5.3e-10 Score=98.49 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=78.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C-------CC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I-------PP 253 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~-------p~ 253 (360)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|..+ + . ..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34678999999999999999999988 789999999 888877663 3689999999865 2 2 35
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
||+|++... ......+++++.++|+| ||.|++-+...
T Consensus 157 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 999997543 23356789999999999 88887765444
No 197
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.00 E-value=1.5e-09 Score=94.09 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=77.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-----CCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC----
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-----PGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYI---- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~---- 251 (360)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5789999999 888877763 258999999987743
Q ss_pred ---CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 252 ---PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 252 ---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
..||+|++...++++. +++.+.|+| ||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASELP--------EILVDLLAE---NGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSCC--------HHHHHHEEE---EEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHHH--------HHHHHhcCC---CcEEEEEEcc
Confidence 2599999999988653 567888999 8988886543
No 198
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.00 E-value=1.6e-09 Score=98.96 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=78.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C-CC-CccEEEec-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y-IP-PADAYFFK- 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~-~p-~~D~i~~~- 260 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 589999999 888877664 3479999999876 2 23 59999983
Q ss_pred -----ccccc-------CChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 261 -----LVFHA-------FGDED-------CLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 261 -----~~lh~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.++++ |+.++ ..++|+++.+.|+| ||++++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence 23332 22222 15899999999999 89888866543
No 199
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.00 E-value=2.3e-10 Score=112.90 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=83.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C--CCeEEEeCCCCC---CC-C-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T--ENLKYIAGDMFQ---YI-P-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~ri~~~~~D~~~---~~-p-~~D~i~~~ 260 (360)
+..+.+|||||||.|.++..+++. +.+|+|+|. +.+++.|+. . -+|+|.++++.+ .. + .||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 345689999999999999999997 889999999 888887763 2 469999999865 22 2 59999999
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
.+|||.++++...-+.++.+.|++ +++.+++..+..+
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e 178 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKE 178 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTT
T ss_pred cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecccc
Confidence 999999988755566677788888 7777777665544
No 200
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.00 E-value=7.5e-11 Score=103.40 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=97.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC-CCccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YI-PPADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~-p~~D~i~~~~~l 263 (360)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +. ..||+|++...+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 36789999999999999999987 489999999 888887764 1589999999977 32 369999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCce
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTH 343 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 343 (360)
|+.++.. ..+.+++++|+| ||.+++ +.... ...+.... --+....+++..++...|...
T Consensus 155 ~~~~~~~--~~~~~~~~~L~p---gG~~i~-~~~~~------------~~~~~~~~---lp~~~~~~~~~~~l~~~g~~~ 213 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMSP---DGFEIF-RLSKK------------ITNNIVYF---LPRNADIDQVASLAGPGGQVE 213 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCSS---CHHHHH-HHHHH------------HCSCEEEE---EETTBCHHHHHHTTCTTCCEE
T ss_pred CCcchhh--hHHHHHHhhcCC---cceeHH-HHHHh------------hCCceEEE---CCCCCCHHHHHHHhccCCCEE
Confidence 9876653 357788999999 887544 21110 00000000 012336778888888888766
Q ss_pred eEEEeeCCce
Q 018116 344 YKITNVFGLK 353 (360)
Q Consensus 344 ~~~~~~~~~~ 353 (360)
+......+..
T Consensus 214 i~~~~~~~~~ 223 (241)
T 3gdh_A 214 IEQNFLNNKL 223 (241)
T ss_dssp EEEEEETTEE
T ss_pred EEehhhcCcc
Confidence 6666555543
No 201
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.00 E-value=6e-10 Score=94.18 Aligned_cols=102 Identities=16% Similarity=0.336 Sum_probs=74.3
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCC------------
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYI------------ 251 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~------------ 251 (360)
.+.+.+. .+.++.+|||+|||+|.++..++++ ..+++++|+.++ ....+++++.+|+.+..
T Consensus 15 ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 15 FLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp HHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 4455554 2457789999999999999999988 789999999432 12468999999997732
Q ss_pred --CCccEEEecccccc---CC-h-----hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 252 --PPADAYFFKLVFHA---FG-D-----EDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 252 --p~~D~i~~~~~lh~---~~-~-----~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
..||+|++...... +. + +.+..+|+.+.++|+| ||++++..
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~ 139 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQ 139 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 36999998532211 11 1 2245789999999999 88887644
No 202
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.00 E-value=5e-10 Score=97.25 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=75.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC------CCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCC--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP------GIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYIP-- 252 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~p-- 252 (360)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|....++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998765 369999999 888887764 2589999999977443
Q ss_pred -CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 253 -PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 253 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.||+|++...++++. +++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 599999999998766 467888999 89888754
No 203
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.99 E-value=1.1e-09 Score=97.24 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=71.7
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--eCCCCC-CCCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ--TE------NLKYI--AGDMFQ-YIPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------ri~~~--~~D~~~-~~p~~D~i~~~~ 261 (360)
+.++.+|||||||+|.++..+++. .+++++|+.+++..+.. .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 457789999999999999999887 68999999446443322 11 68999 999976 323699999976
Q ss_pred ccccCChh----H-HHHHHHHHHHhccCCCCCc--EEEEEeee
Q 018116 262 VFHAFGDE----D-CLKILKKCREAIAGNGERG--KVLIMDIV 297 (360)
Q Consensus 262 ~lh~~~~~----~-~~~~L~~~~~~L~p~~~gG--~lli~e~~ 297 (360)
. ++.+.. . ...+|+.+.++|+| || .+++-...
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVLC 187 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEESC
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeCC
Confidence 6 443221 1 12479999999999 89 77774443
No 204
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.97 E-value=1.2e-09 Score=97.72 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=71.2
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--eCCCCC-CCCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ--TE------NLKYI--AGDMFQ-YIPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------ri~~~--~~D~~~-~~p~~D~i~~~~ 261 (360)
+.++.+|||||||+|.++..++++ .+++++|+.++...+++ .. ++.++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999987 58999999446443322 11 78999 999876 323699999976
Q ss_pred ccccCChh----H-HHHHHHHHHHhccCCCCCc--EEEEEee
Q 018116 262 VFHAFGDE----D-CLKILKKCREAIAGNGERG--KVLIMDI 296 (360)
Q Consensus 262 ~lh~~~~~----~-~~~~L~~~~~~L~p~~~gG--~lli~e~ 296 (360)
. ++.+.. . ..++|+.+.++|+| || .+++...
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEeC
Confidence 6 433221 1 12479999999999 99 8777443
No 205
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.96 E-value=1.2e-09 Score=95.71 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=77.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C-------CC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ--Y-I-------PP 253 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~--~-~-------p~ 253 (360)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|..+ + . ..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34678999999999999999999988 789999999 888877653 3589999999865 2 2 35
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
||+|++.. +......+++++.+.|+| ||.|++-+..
T Consensus 148 fD~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~ 183 (237)
T 3c3y_A 148 YDFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL 183 (237)
T ss_dssp EEEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred cCEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence 99998753 234457899999999999 7777665443
No 206
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.96 E-value=2e-09 Score=93.26 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=75.6
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC---CCccE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYI---PPADA 256 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~---p~~D~ 256 (360)
..+..+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3567899999999999999999885 6679999999 888877653 248999999987532 25999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 257 YFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
|++...++++. +++.+.|+| ||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence 99998887654 467889999 898888654
No 207
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.95 E-value=1.6e-09 Score=98.36 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=69.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-----hHHHhcCCC----CCCeEEEeC-CCCC-CCCCccEEEecc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-----PHAVANMPQ----TENLKYIAG-DMFQ-YIPPADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~----~~ri~~~~~-D~~~-~~p~~D~i~~~~ 261 (360)
+.++.+|||||||+|.++..++++ .+++++|. +..++.... .+++.++.+ |+.. +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456789999999999999999987 47999998 434433321 267999999 9876 344699999966
Q ss_pred ccc---cCChhH-HHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 VFH---AFGDED-CLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 ~lh---~~~~~~-~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.++ +..+.. ...+|+.+.++|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 543 222222 22689999999999 897766
No 208
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.95 E-value=6.3e-10 Score=97.05 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CC------CCcc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ---YI------PPAD 255 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~---~~------p~~D 255 (360)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+ .. ..||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 4567999999999999999999987 789999999 888887763 3579999999754 11 4699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 256 AYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 256 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
+|++... .+....+++++.+.|+| ||.|++.+....
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence 9987543 34456789999999999 888877665543
No 209
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.94 E-value=2.6e-09 Score=99.21 Aligned_cols=108 Identities=13% Similarity=0.129 Sum_probs=82.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC--
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI-- 251 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~-- 251 (360)
..++.... +.+..+|||+|||+|.+++.++... |+.+++++|+ +.+++.+++ .+++++..+|+.+ +.
T Consensus 193 ~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 193 QALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 34444445 5677899999999999999999987 8899999999 999887764 2389999999987 32
Q ss_pred CCccEEEeccccccC-C-hhH----HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 252 PPADAYFFKLVFHAF-G-DED----CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 252 p~~D~i~~~~~lh~~-~-~~~----~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+.||+|++.-..+.. . ..+ ...+++++++.|+| ||+++++.
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t 317 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLT 317 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEE
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 358999985443321 1 111 25789999999999 99998854
No 210
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.94 E-value=3e-09 Score=93.41 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=79.3
Q ss_pred HHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C--C
Q 018116 185 VKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYI-P--P 253 (360)
Q Consensus 185 ~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~-p--~ 253 (360)
++..++ ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .+++++..+|+.+.. + .
T Consensus 83 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 83 IALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 444444 567889999999999999999998 789999999 888877663 268999999998754 3 5
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
||+|++. .++. ..+++++.++|+| ||++++....
T Consensus 159 ~D~v~~~-----~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VREP--WHYLEKVHKSLME---GAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred ccEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 9999972 3332 3679999999999 9999987753
No 211
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.94 E-value=2.2e-09 Score=96.19 Aligned_cols=102 Identities=11% Similarity=0.209 Sum_probs=80.6
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CC
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQ-YI 251 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~-~~ 251 (360)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +.
T Consensus 90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 4455555 667889999999999999999996 57889999999 888876653 2589999999977 34
Q ss_pred C--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 252 P--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 252 p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+ .||+|++ +.++. ..+|+++.++|+| ||++++....
T Consensus 168 ~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred CCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence 3 5999997 23333 2679999999999 9999987653
No 212
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.93 E-value=8.5e-10 Score=99.18 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=76.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC----CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY----IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~----~p~~D~i~ 258 (360)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+. ...||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999999 888876542 36899999998652 23599999
Q ss_pred eccccccCChhHH--HHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFGDEDC--LKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+....+..+.... .+++++++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8544333233222 5899999999999 8888775
No 213
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.93 E-value=2.6e-09 Score=95.51 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=80.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-C-CCccEEEecccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY-I-PPADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~-~-p~~D~i~~~~~l 263 (360)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+++ ..++.++.+|+.+. . ..||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 999887764 35789999999764 2 259999886543
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
...++++++.+.|+| ||.+++.+....
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~ 223 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAE 223 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCcc
Confidence 234679999999999 898888776543
No 214
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.93 E-value=9.6e-10 Score=98.94 Aligned_cols=101 Identities=20% Similarity=0.298 Sum_probs=75.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIPP 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p~ 253 (360)
..+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 34455555 567789999999999999999998 458999999 888876653 2589999999987 6778
Q ss_pred ccEEEeccccccCChhHHHHHHH--------------HH--HHhccCCCCCcEE
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILK--------------KC--REAIAGNGERGKV 291 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~--------------~~--~~~L~p~~~gG~l 291 (360)
||+|+++ ..++++.+....+|. ++ +++++| ||++
T Consensus 94 fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~ 143 (285)
T 1zq9_A 94 FDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKL 143 (285)
T ss_dssp CSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTT
T ss_pred hcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCcc
Confidence 9998884 444466555555553 22 357899 8865
No 215
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.93 E-value=1.9e-09 Score=91.94 Aligned_cols=96 Identities=11% Similarity=0.171 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--CC--CCccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ--YI--PPADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~--~~--p~~D~i~~~~~l 263 (360)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +. ..||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 467999999999999998877642 48999999 999888764 2589999999866 32 259999987765
Q ss_pred ccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeee
Q 018116 264 HAFGDEDCLKILKKCRE--AIAGNGERGKVLIMDIV 297 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~e~~ 297 (360)
| .. ....+++.+.+ +|+| ||.+++....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-CC--cHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 4 32 23466777766 4999 8888765543
No 216
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.92 E-value=1e-09 Score=100.12 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=78.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCC----CCCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQY----IPPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~----~p~~D~i 257 (360)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 888876542 36899999998662 2359999
Q ss_pred Eecccccc---CChhH--HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 258 FFKLVFHA---FGDED--CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 258 ~~~~~lh~---~~~~~--~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
++....|. -+... ..+++++++++|+| ||.+++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEcc
Confidence 99765543 11111 25789999999999 888887643
No 217
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.92 E-value=1e-09 Score=98.60 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=74.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC----------------CCCCeEEEeCCCCCC---CCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP----------------QTENLKYIAGDMFQY---IPP 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~ri~~~~~D~~~~---~p~ 253 (360)
....+|||||||+|.++..+++. |..+++++|+ +.+++.++ ..++++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999988 8889999999 88877543 246899999997552 235
Q ss_pred ccEEEeccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 254 ADAYFFKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
||+|++....+..+... ..+++++++++|+| ||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99999855433222222 25789999999999 88777753
No 218
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.91 E-value=9.8e-10 Score=98.35 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=75.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---C-CCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY---I-PPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~---~-p~~D~i~ 258 (360)
....+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+. . ..||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999998777789999999 888876542 47999999998652 2 3599999
Q ss_pred eccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+....+..+... ...++++++++|+| ||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 854433222111 14689999999999 7877764
No 219
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.91 E-value=1.1e-09 Score=100.45 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=76.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CC--CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ---YI--PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~---~~--p~~D~i 257 (360)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+ .. ..||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 888887653 3689999999865 22 259999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 018116 258 FFKLVFHAFGDED--CLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 258 ~~~~~lh~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
++....+..+.+. ...++++++++|+| ||.|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854321111111 36899999999999 8877774
No 220
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.91 E-value=9.7e-10 Score=100.10 Aligned_cols=98 Identities=16% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC----CCCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY----IPPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~----~p~~D~i~ 258 (360)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999878899999999 888876542 36899999998662 23599999
Q ss_pred eccccccCChh-HH--HHHHHHHHHhccCCCCCcEEEEEe
Q 018116 259 FKLVFHAFGDE-DC--LKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 259 ~~~~lh~~~~~-~~--~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+... +++... .. ..++++++++|+| ||.+++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 8543 333222 21 6889999999999 78777643
No 221
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.90 E-value=1.2e-09 Score=99.83 Aligned_cols=97 Identities=13% Similarity=0.233 Sum_probs=75.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---C-CCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY---I-PPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~---~-p~~D~i~ 258 (360)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878899999999 888876542 36899999998652 2 3599999
Q ss_pred eccccccCC-hhHH--HHHHHHHHHhccCCCCCcEEEEE
Q 018116 259 FKLVFHAFG-DEDC--LKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 259 ~~~~lh~~~-~~~~--~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+... +.+. .+.. .+++++++++|+| ||.+++.
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8543 2222 2221 5889999999999 7877764
No 222
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.89 E-value=1.2e-09 Score=99.16 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=74.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC--C-C-CCccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQ--Y-I-PPADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~--~-~-p~~D~i~ 258 (360)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+ + . ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 888876653 4789999999865 1 2 3599999
Q ss_pred eccccccCChh--HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 259 FKLVFHAFGDE--DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 259 ~~~~lh~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 85443322211 124689999999999 88777654
No 223
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.86 E-value=5.5e-09 Score=97.02 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA 265 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~ 265 (360)
++++|||||||+|.++...+++ ...+++++|..++++.|++ .++|+++.+|+.+ +.| .+|+|++-.+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 5689999999999998766665 3458999998556666553 6889999999987 566 6999998544333
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEE
Q 018116 266 FGD-EDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 266 ~~~-~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+.. .....++....++|+| ||.++
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred ccccchhhhHHHHHHhhCCC---CceEC
Confidence 332 2456778888899999 77765
No 224
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.85 E-value=1.8e-08 Score=85.93 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCCccEEEeccccccCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIPPADAYFFKLVFHAFG 267 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~ 267 (360)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++. .-+++++.+|+.+-...||+|++.-.+|...
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 457899999999999999998873 348999999 888887764 1279999999876323799999998888876
Q ss_pred hhHHHHHHHHHHHhc
Q 018116 268 DEDCLKILKKCREAI 282 (360)
Q Consensus 268 ~~~~~~~L~~~~~~L 282 (360)
.....++++++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555567888888776
No 225
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.85 E-value=3.7e-09 Score=89.74 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=66.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCCccEEEeccccccCChhHH
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-TENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDC 271 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~ 271 (360)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+-...||+|++...+|++++...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 46689999999999999999887 5557999999 889887764 23899999998763246999999999999876544
Q ss_pred HHHHHHHHHhc
Q 018116 272 LKILKKCREAI 282 (360)
Q Consensus 272 ~~~L~~~~~~L 282 (360)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 57788887765
No 226
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.84 E-value=5.8e-09 Score=92.50 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCCCCccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQYIPPADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~~p~~D~i~~~~~ 262 (360)
....+|||||||+|.++..+++. + .+++++|+ +.+++.+++ .+|++++.+|..+....||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999988 7 89999999 999998874 358999999987633569999975
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
.+++. .+++.++++|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 23432 489999999999 8887774
No 227
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.82 E-value=5.5e-09 Score=94.63 Aligned_cols=97 Identities=13% Similarity=0.255 Sum_probs=70.7
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~p~~ 254 (360)
..+++... ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 34445454 567789999999999999999987 569999999 888877653 3689999999987 56689
Q ss_pred cEEEeccccccCChhHHHHHH---------------HHHHHhccC
Q 018116 255 DAYFFKLVFHAFGDEDCLKIL---------------KKCREAIAG 284 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L---------------~~~~~~L~p 284 (360)
|+|++. ..++++.+...++| ..+.+.+++
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 999875 45557776666666 346677877
No 228
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.82 E-value=2.7e-09 Score=96.47 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---C-CCccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----------TENLKYIAGDMFQY---I-PPADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~ri~~~~~D~~~~---~-p~~D~i~~ 259 (360)
...+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999878889999999 888876553 46899999997652 2 25999997
Q ss_pred ccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 260 KLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 260 ~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
...-+..... ...+++++++++|+| ||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 4321101110 125789999999999 8877774
No 229
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.82 E-value=1.4e-08 Score=90.47 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=89.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CCCccEEEeccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY--IPPADAYFFKLV 262 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~--~p~~D~i~~~~~ 262 (360)
..++.+|||+|||+|.+++.+++. ...+++++|+ |.+++.+++ .++++++.+|..+- ...||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 467899999999999999999887 4578999999 988887763 67899999999773 235999987532
Q ss_pred cccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCc
Q 018116 263 FHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 263 lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 342 (360)
. ....+|..+.++|+| ||.|.+.+.+..+.. .....+.++++.++.|++
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~----------------------~~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEEeeeccccc----------------------chhHHHHHHHHHHHcCCc
Confidence 1 124678888999999 888777665432211 112456777888899997
Q ss_pred ee
Q 018116 343 HY 344 (360)
Q Consensus 343 ~~ 344 (360)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 230
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.81 E-value=7e-09 Score=92.75 Aligned_cols=104 Identities=10% Similarity=0.103 Sum_probs=77.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C------CCCccEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y------IPPADAY 257 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~------~p~~D~i 257 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ..+++++.+|+.+ + ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998876 89999999 888876653 3489999999866 2 2369999
Q ss_pred Eec------ccccc---CCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 258 FFK------LVFHA---FGD-------EDCLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 258 ~~~------~~lh~---~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
++. .+++. |+. +...++|+++.+.|+| ||++++......
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCC
Confidence 985 22221 111 1236789999999999 898888765543
No 231
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.79 E-value=1.4e-08 Score=94.91 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=90.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--CccEEEeccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP--PADAYFFKLV 262 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~~~~ 262 (360)
.+..+|||+|||+|.+++.++...+..+++++|+ +.+++.++. .+++++..+|+.+ +.+ .||+|++.-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 5678999999999999999999877779999999 999988764 2589999999987 433 5999999654
Q ss_pred cccCC-----hhH-HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHH
Q 018116 263 FHAFG-----DED-CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 263 lh~~~-----~~~-~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
.+... .++ -.++++.+++.| + |+.+++ .. +.+.+.+.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~---g~~~~i-~~-------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E---KRGVFI-TT-------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E---EEEEEE-ES-------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C---CeEEEE-EC-------------------------------CHHHHHHHH
Confidence 33211 111 257888999988 5 344433 21 345666788
Q ss_pred HHCCCceeEEEeeC
Q 018116 337 LDAGFTHYKITNVF 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
++.||+..+...+.
T Consensus 340 ~~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 340 AENGFEIIHHRVIG 353 (373)
T ss_dssp HHTTEEEEEEEEEE
T ss_pred HHcCCEEEEEEEEE
Confidence 89999998887773
No 232
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.77 E-value=2.4e-08 Score=95.57 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=81.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC--CccEEEe
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP--PADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p--~~D~i~~ 259 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999887 89999999 887776553 3579999999876 2 33 4999996
Q ss_pred ------ccccccCChh-------HH-------HHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 ------KLVFHAFGDE-------DC-------LKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ------~~~lh~~~~~-------~~-------~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
..++++.++. +. .++|+++.+.|+| ||+|++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 3345544432 11 5789999999999 999988776544
No 233
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.77 E-value=2.7e-08 Score=94.37 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCC--CCccEEEecccc-------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYI--PPADAYFFKLVF------- 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~--p~~D~i~~~~~l------- 263 (360)
+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+.... ..||+|+++-..
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~~ 115 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEAS 115 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCTT
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCccccc
Confidence 45699999999999999999987 6789999999 8888777 68999999998743 369999994221
Q ss_pred ---ccCChhHH-----------------HHHHHHHHHhccCCCCCcEEEEEee
Q 018116 264 ---HAFGDEDC-----------------LKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 264 ---h~~~~~~~-----------------~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
+|++++.. ..+++++.+.|+| ||+++++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 11223321 2568999999999 899887654
No 234
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.73 E-value=1.2e-08 Score=94.24 Aligned_cols=99 Identities=11% Similarity=0.153 Sum_probs=80.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCC-----CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPG-----IKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQYIP--PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~~p--~~D~i~~~~ 261 (360)
+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++. ..++++..+|.+.+.+ .||+|++.-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 5679999999999999999988764 78999999 888877763 3378999999987543 699999988
Q ss_pred ccccCChhHH----------------HHHHHHHHHhccCCCCCcEEEEEee
Q 018116 262 VFHAFGDEDC----------------LKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 262 ~lh~~~~~~~----------------~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+++++.++. ..+++++.+.|+| ||+++++.+
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 8776654432 2589999999999 898887653
No 235
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.72 E-value=2.6e-08 Score=91.47 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEeCCCCCC-------CCCccEEE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TE-NLKYIAGDMFQY-------IPPADAYF 258 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-ri~~~~~D~~~~-------~p~~D~i~ 258 (360)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4679999999999999999986 449999999 888887764 22 599999998762 23699999
Q ss_pred eccccccC--------ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 259 FKLVFHAF--------GDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 259 ~~~~lh~~--------~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+.-..... ..+...++++++.++|+| ||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence 83221110 123456899999999999 8987775544
No 236
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.71 E-value=3.8e-08 Score=88.16 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=80.5
Q ss_pred cCCCCEEEEeCCCC------chHHHHHHHHCC-CCeEEEeec-hHHHhcCCCCCCeEE-EeCCCCC-CCC-CccEEEecc
Q 018116 193 FEGLGSIVDVGGGN------GGFSKIISEAFP-GIKCTVLDL-PHAVANMPQTENLKY-IAGDMFQ-YIP-PADAYFFKL 261 (360)
Q Consensus 193 ~~~~~~iLDvG~G~------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~ri~~-~~~D~~~-~~p-~~D~i~~~~ 261 (360)
..++.+|||+|||+ |. ..+++..| +.+++++|+ +. + +++++ +.+|+.+ +.+ .||+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------CCCEEEEECccccCCccCcccEEEEcC
Confidence 46678999999955 66 55666776 689999999 54 2 46889 9999987 444 599999853
Q ss_pred cccc--------CC-hhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHH
Q 018116 262 VFHA--------FG-DEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEW 332 (360)
Q Consensus 262 ~lh~--------~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~ 332 (360)
..+. .. .+....+|+.++++|+| ||++++..... + ...++
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~-------------------------~---~~~~l 180 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEH-------------------------S---WNADL 180 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSS-------------------------S---CCHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEecc-------------------------C---CHHHH
Confidence 3211 10 12345789999999999 89888743211 0 12467
Q ss_pred HHHHHHCCCceeEEE
Q 018116 333 KTLFLDAGFTHYKIT 347 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~ 347 (360)
.+++++.||..+++.
T Consensus 181 ~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 181 YKLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHHHcCCcEEEEE
Confidence 777888888766665
No 237
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.68 E-value=2.8e-08 Score=87.22 Aligned_cols=88 Identities=16% Similarity=0.270 Sum_probs=62.6
Q ss_pred HHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC-CccE
Q 018116 184 IVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP-PADA 256 (360)
Q Consensus 184 ~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p-~~D~ 256 (360)
.+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++ +.++
T Consensus 21 ~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 96 (244)
T 1qam_A 21 KIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY 96 (244)
T ss_dssp HHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred HHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe
Confidence 3444444 4567899999999999999999985 78999999 888876653 3689999999987 555 2344
Q ss_pred EEeccccccCChhHHHHHH
Q 018116 257 YFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L 275 (360)
+++.+.-++++.+-..+++
T Consensus 97 ~vv~nlPy~~~~~~l~~~l 115 (244)
T 1qam_A 97 KIFGNIPYNISTDIIRKIV 115 (244)
T ss_dssp EEEEECCGGGHHHHHHHHH
T ss_pred EEEEeCCcccCHHHHHHHH
Confidence 4555555555444333333
No 238
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.67 E-value=1.3e-08 Score=89.53 Aligned_cols=104 Identities=11% Similarity=0.162 Sum_probs=74.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC---C
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP---P 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p---~ 253 (360)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 34455554 5677899999999999999999984 79999999 888888875 3589999999987 444 2
Q ss_pred ccEEEeccccccCChhHHHHHH--------------HHHHHhccCCCCCcEEEEEe
Q 018116 254 ADAYFFKLVFHAFGDEDCLKIL--------------KKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L--------------~~~~~~L~p~~~gG~lli~e 295 (360)
| .| +.+.-++.+.+....++ +.+.+.|+| ||++.+..
T Consensus 95 f-~v-v~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~ 145 (245)
T 1yub_A 95 Y-KI-VGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL 145 (245)
T ss_dssp E-EE-EEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred c-EE-EEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence 5 33 34444444443333333 568889999 88876544
No 239
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.66 E-value=6.6e-08 Score=92.06 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=79.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC--CccEEEe--
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY---IP--PADAYFF-- 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~---~p--~~D~i~~-- 259 (360)
..++.+|||+|||+|..+..+++..++.+++++|+ +..++.+++ ..+++++.+|+.+. ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45678999999999999999999998899999999 777766543 33589999998762 23 5999996
Q ss_pred ----ccccccCChh-------HH-------HHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 ----KLVFHAFGDE-------DC-------LKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ----~~~lh~~~~~-------~~-------~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
..++++.++. +. .++|+++.+.|+| ||+|++.+....
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 2344443331 11 4789999999999 899888775543
No 240
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.60 E-value=2.2e-07 Score=89.37 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=78.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CccEEEec--
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFP-GIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP-PADAYFFK-- 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p-~~D~i~~~-- 260 (360)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..++.++.+|+.. + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 579999999 888876653 3579999999876 2 33 59999971
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 261 ----LVF-------HAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 261 ----~~l-------h~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
.++ .+|+.++ ..++|+++.++|+| ||+|++......
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCC
Confidence 122 2344322 24789999999999 898887766544
No 241
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.59 E-value=6.8e-08 Score=92.14 Aligned_cols=103 Identities=9% Similarity=0.078 Sum_probs=77.8
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CccEEEe-
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP-PADAYFF- 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p-~~D~i~~- 259 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .. +.++.+|+.+ + .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 457789999999999999999998865 69999999 888877653 24 9999999765 2 23 5999996
Q ss_pred ------------ccccccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 260 ------------KLVFHAFGDEDC-------LKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 260 ------------~~~lh~~~~~~~-------~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
......|+.++. .++|+++.+.|+| ||+|+.......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~~ 233 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTFA 233 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccCc
Confidence 112222333222 6799999999999 888887665443
No 242
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.57 E-value=9.9e-07 Score=81.68 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=94.6
Q ss_pred CCEEEEeCCCCchHHHHH--------HHHC-------CCCeEEEeechH-H-------HhcCCC-------------CCC
Q 018116 196 LGSIVDVGGGNGGFSKII--------SEAF-------PGIKCTVLDLPH-A-------VANMPQ-------------TEN 239 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~-------------~~r 239 (360)
..+|+|+|||+|..+..+ .+++ |..++...|+|. . +....+ .+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999988776 2333 788999999843 2 122110 011
Q ss_pred -eEEEeCCCCC-CCC--CccEEEeccccccCChh------------------------------------HHHHHHHHHH
Q 018116 240 -LKYIAGDMFQ-YIP--PADAYFFKLVFHAFGDE------------------------------------DCLKILKKCR 279 (360)
Q Consensus 240 -i~~~~~D~~~-~~p--~~D~i~~~~~lh~~~~~------------------------------------~~~~~L~~~~ 279 (360)
+.-+.+.+.. .+| .+|+|+++.+||++++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334666666 455 59999999999998621 3445799999
Q ss_pred HhccCCCCCcEEEEEeeecCCCCcchhhh--------hHhHhhhhhhhcc--------c--CCcccCHHHHHHHHH-HCC
Q 018116 280 EAIAGNGERGKVLIMDIVINEKEDKHQVT--------EAKLLGDTLMSVS--------V--DGKERTDEEWKTLFL-DAG 340 (360)
Q Consensus 280 ~~L~p~~~gG~lli~e~~~~~~~~~~~~~--------~~~~~~d~~~~~~--------~--~g~~~t~~e~~~ll~-~aG 340 (360)
+.|+| ||++++.-...++........ ....+.++..... . .-..++.+|++++++ +.|
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~ 289 (374)
T 3b5i_A 213 AEVKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGS 289 (374)
T ss_dssp HHEEE---EEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCS
T ss_pred HHhCC---CCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCC
Confidence 99999 999988877665532110000 0001111110000 0 123469999999998 589
Q ss_pred CceeEEEee
Q 018116 341 FTHYKITNV 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|++..+...
T Consensus 290 F~I~~le~~ 298 (374)
T 3b5i_A 290 FAIDKLVVY 298 (374)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 998776543
No 243
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.57 E-value=7.8e-08 Score=88.49 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCCccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQYIPPADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~~~~lh~ 265 (360)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++ .++++++.+|+++....||+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4678999999999999999 76 4779999999 888887764 36899999999874467999998421
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
.....+++.+.+.|+| ||.+++.+...
T Consensus 268 ---~~~~~~l~~~~~~L~~---gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEE---GGVIHYYTIGK 294 (336)
T ss_dssp ---TTGGGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred ---HhHHHHHHHHHHHcCC---CCEEEEEEeec
Confidence 1123689999999999 88888876554
No 244
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.55 E-value=3.5e-08 Score=92.56 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEeCCCCCC---C----CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TE-NLKYIAGDMFQY---I----PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-ri~~~~~D~~~~---~----p~~D~i 257 (360)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .+ +++|+.+|+++. . ..||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456899999999999999999852 348999999 888887764 23 899999998762 1 259999
Q ss_pred Eecccc-----ccCC--hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVF-----HAFG--DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~l-----h~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++.-.. .+.. .+...++++.+.+.|+| ||.|++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 984222 1122 12345688889999999 78776654
No 245
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.54 E-value=1.6e-07 Score=84.40 Aligned_cols=88 Identities=13% Similarity=0.198 Sum_probs=66.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~ 254 (360)
..+++... ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .|
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 34455555 567789999999999999999998 579999999 888887764 4789999999988 555 49
Q ss_pred cEEEeccccccCChhHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L 275 (360)
|+|+++.. ++++.+-..++|
T Consensus 116 D~Iv~NlP-y~is~pil~~lL 135 (295)
T 3gru_A 116 NKVVANLP-YQISSPITFKLI 135 (295)
T ss_dssp SEEEEECC-GGGHHHHHHHHH
T ss_pred cEEEEeCc-ccccHHHHHHHH
Confidence 99986543 344544333333
No 246
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.53 E-value=7.8e-08 Score=90.59 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C-C-CeEEEeCCCCCC-------CCCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------T-E-NLKYIAGDMFQY-------IPPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~-ri~~~~~D~~~~-------~p~~D~i 257 (360)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . . +++++.+|+++. ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999863 458999999 888887763 2 3 799999998762 1369999
Q ss_pred EeccccccC-------ChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 258 FFKLVFHAF-------GDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 258 ~~~~~lh~~-------~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
++.-..... ......+++.++.+.|+| ||.+++..
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 985321110 013456889999999999 78777654
No 247
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.52 E-value=1.2e-06 Score=83.49 Aligned_cols=90 Identities=11% Similarity=0.175 Sum_probs=65.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC-----C--CccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYI-----P--PADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~-----p--~~D~i~ 258 (360)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+. ..+++|+.+|+.+.. + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456789999999999999999987 679999999 889887764 358999999998732 1 599998
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+.- |...+..+++.+.+ ++| ++.+++
T Consensus 362 ~dP-----Pr~g~~~~~~~l~~-~~p---~~ivyv 387 (433)
T 1uwv_A 362 LDP-----ARAGAAGVMQQIIK-LEP---IRIVYV 387 (433)
T ss_dssp ECC-----CTTCCHHHHHHHHH-HCC---SEEEEE
T ss_pred ECC-----CCccHHHHHHHHHh-cCC---CeEEEE
Confidence 732 21112245555554 677 555544
No 248
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.50 E-value=6.9e-08 Score=90.94 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-------CCCccEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQY-------IPPADAYFF 259 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~~-------~p~~D~i~~ 259 (360)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+++. ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999986 4458999999 888887764 22899999998762 125999998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 260 KLVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 260 ~~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.-..+..+. .....+++++.+.|+| ||.+++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 432222111 3456789999999999 888777654
No 249
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.50 E-value=2.2e-07 Score=88.54 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=76.9
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-CccEEEec
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--IP-PADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~p-~~D~i~~~ 260 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|... . .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 467789999999999999999998664 69999999 888876653 3579999999865 2 23 59999872
Q ss_pred c------cccc-------CChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 018116 261 L------VFHA-------FGDED-------CLKILKKCREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 261 ~------~lh~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~ 299 (360)
- ++.. |+.++ ..++|+++.+.|+| ||+|+.......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~ 238 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTFA 238 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeecc
Confidence 2 2221 11111 13789999999999 888877665443
No 250
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.49 E-value=1.4e-07 Score=88.47 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=74.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-------CCCccEEEec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY-------IPPADAYFFK 260 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~-------~p~~D~i~~~ 260 (360)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+++. ...||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 678999999 888887764 24599999998762 1259999984
Q ss_pred cccccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 261 LVFHAFGD-------EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 261 ~~lh~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
-..+..+. +...++++++.+.|+| ||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 32211111 3456789999999999 888877654
No 251
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.46 E-value=1.9e-06 Score=79.82 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=92.3
Q ss_pred CCEEEEeCCCCchHHHHHHHH-----------------CCCCeEEEeech-----------HH-HhcC----CCCCCeEE
Q 018116 196 LGSIVDVGGGNGGFSKIISEA-----------------FPGIKCTVLDLP-----------HA-VANM----PQTENLKY 242 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-~~~a----~~~~ri~~ 242 (360)
.-+|+|+||++|..+..+... .|.+++...|+| +. .+.. ....+--|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 579999999999998887776 467888999987 11 1111 01112334
Q ss_pred E---eCCCCC-CCC--CccEEEeccccccCChhH-------------------------HH------------HHHHHHH
Q 018116 243 I---AGDMFQ-YIP--PADAYFFKLVFHAFGDED-------------------------CL------------KILKKCR 279 (360)
Q Consensus 243 ~---~~D~~~-~~p--~~D~i~~~~~lh~~~~~~-------------------------~~------------~~L~~~~ 279 (360)
+ .+.|+. -+| .+|+|+++.+||++++.. +. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 455555 355 599999999999876421 21 2377789
Q ss_pred HhccCCCCCcEEEEEeeecCCC--CcchhhhhHhHhhhhhhhcc--------c--CCcccCHHHHHHHHHHCC-CceeEE
Q 018116 280 EAIAGNGERGKVLIMDIVINEK--EDKHQVTEAKLLGDTLMSVS--------V--DGKERTDEEWKTLFLDAG-FTHYKI 346 (360)
Q Consensus 280 ~~L~p~~~gG~lli~e~~~~~~--~~~~~~~~~~~~~d~~~~~~--------~--~g~~~t~~e~~~ll~~aG-f~~~~~ 346 (360)
+.|+| ||++++.-...++. ...........+.++..... . .-..++.+|++++++++| |++..+
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 99998887766554 21100001112222211100 1 123469999999999985 776665
Q ss_pred E
Q 018116 347 T 347 (360)
Q Consensus 347 ~ 347 (360)
.
T Consensus 290 e 290 (384)
T 2efj_A 290 E 290 (384)
T ss_dssp E
T ss_pred E
Confidence 4
No 252
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.45 E-value=4.8e-07 Score=84.84 Aligned_cols=111 Identities=6% Similarity=-0.030 Sum_probs=79.8
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCC--------------------------------------CeEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPG--------------------------------------IKCTV 224 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 224 (360)
..++.... +.+...|||.+||+|.+++..+....+ .++++
T Consensus 191 a~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 191 AALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 44455555 467789999999999999888775433 56999
Q ss_pred eec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc-CC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 225 LDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA-FG-DEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 225 ~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+|+ +.+++.|+. .+++++..+|+.+ +.+ .||+|+++--.+. +. .++...+.+.+.+.|++ -+|++++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEE
Confidence 999 999987764 4579999999987 333 5999998733221 12 24556677777777765 3388888
Q ss_pred EEee
Q 018116 293 IMDI 296 (360)
Q Consensus 293 i~e~ 296 (360)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8654
No 253
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.44 E-value=8.3e-07 Score=69.88 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCc-hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC----CccEEEeccccccC
Q 018116 193 FEGLGSIVDVGGGNG-GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIP----PADAYFFKLVFHAF 266 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p----~~D~i~~~~~lh~~ 266 (360)
.....+|||||||+| ..+..|++. .++.++++|+ |..++ ++..|+|.+.. +||+|++.+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir----- 97 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR----- 97 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----
Confidence 345679999999999 588888874 3789999998 66655 89999999643 799998876
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
|+.+...-+.++++.. |.-++|.-..
T Consensus 98 PP~El~~~i~~lA~~v-----~adliI~pL~ 123 (153)
T 2k4m_A 98 PPAEIHSSLMRVADAV-----GARLIIKPLT 123 (153)
T ss_dssp CCTTTHHHHHHHHHHH-----TCEEEEECBT
T ss_pred CCHHHHHHHHHHHHHc-----CCCEEEEcCC
Confidence 5556666677777665 4566664433
No 254
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.44 E-value=3.4e-07 Score=85.80 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC-CccEEEecccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQY---IP-PADAYFFKLVF 263 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~~---~p-~~D~i~~~~~l 263 (360)
.++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .-..++..+|+++. .+ .||+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 34789999999999999999987 456999999 899888764 22235778998762 22 49999985332
Q ss_pred ccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 264 HAFGD-------EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 264 h~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
+.-+. ..-.++++.+.+.|+| ||.|+++...
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 11111 2235789999999999 8888766543
No 255
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.42 E-value=1.4e-06 Score=81.34 Aligned_cols=112 Identities=11% Similarity=0.013 Sum_probs=82.5
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCC--------------------------------------CeEE
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPG--------------------------------------IKCT 223 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 223 (360)
+..++.... +.+...|+|.+||+|.+++..+....+ .+++
T Consensus 183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 344555555 567789999999999999888765433 5699
Q ss_pred Eeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc-C-ChhHHHHHHHHHHHhccCCCCCcEE
Q 018116 224 VLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA-F-GDEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 224 ~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
++|+ +.+++.++. .+++++..+|+.+ +.+ .||+|+++--.+. + ..++...+.+.+.+.|++ -+|+++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~ 339 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQ 339 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEE
Confidence 9999 999887764 4579999999987 333 6999998633321 2 345667788888888875 348888
Q ss_pred EEEee
Q 018116 292 LIMDI 296 (360)
Q Consensus 292 li~e~ 296 (360)
.|+..
T Consensus 340 ~iit~ 344 (384)
T 3ldg_A 340 FILTN 344 (384)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88754
No 256
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.39 E-value=2.7e-07 Score=88.26 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=76.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------C--CCeEEEeCCCCCC-
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-------------PGIKCTVLDL-PHAVANMPQ------T--ENLKYIAGDMFQY- 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~--~ri~~~~~D~~~~- 250 (360)
....+|+|.|||+|.++..+++.. +..+++|+|+ +.+++.|+. . .++++.++|.+..
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 456799999999999999988763 4578999999 888776652 1 2788999999873
Q ss_pred CC-CccEEEeccccccCChh---------------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 251 IP-PADAYFFKLVFHAFGDE---------------DCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 251 ~p-~~D~i~~~~~lh~~~~~---------------~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.. .||+|+++-.++..... .-..+++++.+.|+| ||++.++.+
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 33 69999997665543211 124789999999999 999987664
No 257
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.38 E-value=3.7e-07 Score=82.33 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=62.3
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--C-
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----TENLKYIAGDMFQ-Y--I- 251 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~ri~~~~~D~~~-~--~- 251 (360)
...+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ .++++++.+|+.. + .
T Consensus 15 l~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 344555555 56778999999999999999999999899999999 999887763 3689999999865 2 1
Q ss_pred ----CCccEEEec
Q 018116 252 ----PPADAYFFK 260 (360)
Q Consensus 252 ----p~~D~i~~~ 260 (360)
..||.|++.
T Consensus 93 ~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 93 TLGIEKVDGILMD 105 (301)
T ss_dssp HTTCSCEEEEEEE
T ss_pred hcCCCCCCEEEEc
Confidence 369999874
No 258
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.38 E-value=6.3e-07 Score=78.71 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=65.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCC-c-cE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YIPP-A-DA 256 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~p~-~-D~ 256 (360)
..+++..+ ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. + ++
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 34455555 557789999999999999999987 4579999999 888887764 4689999999987 4442 1 45
Q ss_pred EEeccccccCChhHHHHHH
Q 018116 257 YFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 257 i~~~~~lh~~~~~~~~~~L 275 (360)
+++.+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666656554333333
No 259
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.35 E-value=7.4e-07 Score=83.40 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=80.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCC--------------------------------------CCeEEE
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFP--------------------------------------GIKCTV 224 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p--------------------------------------~~~~~~ 224 (360)
..++...+ +.+..+|||.+||+|.+++..+.... ..++++
T Consensus 185 a~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 185 AGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 34444445 45678999999999999998877632 257999
Q ss_pred eec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEecccccc-CC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 018116 225 LDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHA-FG-DEDCLKILKKCREAIAGNGERGKVL 292 (360)
Q Consensus 225 ~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p~~~gG~ll 292 (360)
+|+ +.+++.|+. .++|+|..+|+.+ +.+ .||+|+++--... +. .++..++.+.+.+.|++ -+|+++.
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 341 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYY 341 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEE
Confidence 999 999988874 3479999999987 334 5999998544322 22 34566777777777775 3378888
Q ss_pred EEee
Q 018116 293 IMDI 296 (360)
Q Consensus 293 i~e~ 296 (360)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7654
No 260
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.33 E-value=1e-06 Score=78.21 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=66.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC---Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---TENLKYIAGDMFQ-YIP---PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~ri~~~~~D~~~-~~p---~~ 254 (360)
..+++... ..+. +|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 34455555 5566 9999999999999999998 478999999 888877653 4689999999987 444 46
Q ss_pred cEEEeccccccCChhHHHHHHHH
Q 018116 255 DAYFFKLVFHAFGDEDCLKILKK 277 (360)
Q Consensus 255 D~i~~~~~lh~~~~~~~~~~L~~ 277 (360)
|.|+ .+.-++.+.+-..++|..
T Consensus 112 ~~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EEECSSCCHHHHHHHHHH
T ss_pred cEEE-ecCcccccHHHHHHHhcC
Confidence 7655 455566777655566654
No 261
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.31 E-value=6.9e-06 Score=75.50 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=92.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHH----------------CCCCeEEEeech-HHHh----cCCC---CCCeEE---EeCCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA----------------FPGIKCTVLDLP-HAVA----NMPQ---TENLKY---IAGDM 247 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~----~a~~---~~ri~~---~~~D~ 247 (360)
..-+|+|+||++|..+..+... .|..++...|+| .... .... ..+--| +.+.|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4578999999999776654433 467889999984 2222 2211 112233 45677
Q ss_pred CC-CCC--CccEEEeccccccCChh-------------------------------HHHHHHHHHHHhccCCCCCcEEEE
Q 018116 248 FQ-YIP--PADAYFFKLVFHAFGDE-------------------------------DCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 248 ~~-~~p--~~D~i~~~~~lh~~~~~-------------------------------~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
+. .+| .+|+++++.+||++++. +...+|+..++.|+| ||++++
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Confidence 66 455 59999999999987641 234569999999999 999988
Q ss_pred EeeecCCCCcchh-----hh-hHhHhhhhhhhcc----------cCCcccCHHHHHHHHHHCCC-ceeEE
Q 018116 294 MDIVINEKEDKHQ-----VT-EAKLLGDTLMSVS----------VDGKERTDEEWKTLFLDAGF-THYKI 346 (360)
Q Consensus 294 ~e~~~~~~~~~~~-----~~-~~~~~~d~~~~~~----------~~g~~~t~~e~~~ll~~aGf-~~~~~ 346 (360)
.-...++...... +. ....+.++..... ..-..++.+|++++++++|. ++...
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 8877765421100 00 1112222211111 11234589999999999965 65554
No 262
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.30 E-value=2.7e-06 Score=80.57 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-CccEEEecccccc
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQYIP-PADAYFFKLVFHA 265 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~~p-~~D~i~~~~~lh~ 265 (360)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .+ ++|+.+|+.+..+ .||+|++.-.-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 56789999999999999999986 569999999 899888764 23 9999999987444 6999998433221
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+. ..+++.+. .|+| ||.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCC---SEEEEEE
T ss_pred hH----HHHHHHHH-hcCC---CcEEEEE
Confidence 21 13455554 3899 7777664
No 263
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.29 E-value=5e-07 Score=88.90 Aligned_cols=127 Identities=15% Similarity=0.167 Sum_probs=85.0
Q ss_pred ChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhh--hcCCCCEEEEeCCCCchHHHHHHHHC----CCCeEEEeech
Q 018116 155 NYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRK--IFEGLGSIVDVGGGNGGFSKIISEAF----PGIKCTVLDLP 228 (360)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--~~~~~~~iLDvG~G~G~~~~~l~~~~----p~~~~~~~D~~ 228 (360)
..|+.+++|+-....|.+++... +...... .......|+|||||+|-++...+++. ..+++.+++-.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~A-------l~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKC-------LLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------HHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHHH-------HHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 45888888988877777776431 2222110 02344689999999998854433332 23478899984
Q ss_pred HHHhcCCC-------CCCeEEEeCCCCC-CCC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEE
Q 018116 229 HAVANMPQ-------TENLKYIAGDMFQ-YIP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKV 291 (360)
Q Consensus 229 ~~~~~a~~-------~~ri~~~~~D~~~-~~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~l 291 (360)
++...+.+ .++|+++.+|+.+ ..| .+|+|++-.+=..+-.+-...+|....+.|+| ||.+
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 45444432 7899999999988 666 69999985544333444455778888899999 7654
No 264
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.27 E-value=8.3e-07 Score=81.33 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=68.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------C---CCeEEEeCCCCCC-------C
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------T---ENLKYIAGDMFQY-------I 251 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~---~ri~~~~~D~~~~-------~ 251 (360)
..+++||+||||+|.++..+++..+ .+++.+|+ +.+++.+++ . +|++++.+|.++- .
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3578999999999999999998755 78999999 988886653 0 2799999999771 1
Q ss_pred CCccEEEecccc-c-cCCh--hHHHHHHHHH----HHhccCCCCCcEEEEE
Q 018116 252 PPADAYFFKLVF-H-AFGD--EDCLKILKKC----REAIAGNGERGKVLIM 294 (360)
Q Consensus 252 p~~D~i~~~~~l-h-~~~~--~~~~~~L~~~----~~~L~p~~~gG~lli~ 294 (360)
..||+|++--.- . .... --...+++.+ +++|+| ||.+++.
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~p---gGilv~q 313 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 313 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCC---CcEEEEE
Confidence 359999874321 1 0001 0123455555 899999 6665553
No 265
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.26 E-value=2.8e-06 Score=74.32 Aligned_cols=102 Identities=11% Similarity=0.137 Sum_probs=65.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC--CccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP--PADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p--~~D~i~~~~~lh 264 (360)
+.+..+|||+|||+|.++..++++.+..+++++|+ -.....+.. ..++.....++.. .++ .+|+|++-...+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 56778999999999999998887766556777776 332111221 1134444454422 333 599999866544
Q ss_pred ---cCChh-HHHHHHHHHHHhccCCCCC-cEEEEEeeec
Q 018116 265 ---AFGDE-DCLKILKKCREAIAGNGER-GKVLIMDIVI 298 (360)
Q Consensus 265 ---~~~~~-~~~~~L~~~~~~L~p~~~g-G~lli~e~~~ 298 (360)
++-|. ....+|+.+.++|+| | |.+++ ..+.
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~ 186 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLA 186 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESC
T ss_pred cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecC
Confidence 22222 233568999999999 8 88777 4443
No 266
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.26 E-value=9.7e-07 Score=77.72 Aligned_cols=81 Identities=12% Similarity=0.213 Sum_probs=60.2
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC----
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIP---- 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p---- 252 (360)
..+++..+ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 34455555 5677899999999999999999874 79999999 888887764 4799999999987 432
Q ss_pred --CccEEEeccccccCChh
Q 018116 253 --PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 253 --~~D~i~~~~~lh~~~~~ 269 (360)
.+| +..+.-++.+.+
T Consensus 95 ~~~~~--vv~NlPY~is~~ 111 (255)
T 3tqs_A 95 DKPLR--VVGNLPYNISTP 111 (255)
T ss_dssp SSCEE--EEEECCHHHHHH
T ss_pred CCCeE--EEecCCcccCHH
Confidence 355 334444444444
No 267
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.25 E-value=4.2e-07 Score=81.13 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCC--CeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCC
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPG--IKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-YIP 252 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~~p 252 (360)
..+++... ..+..+|||||||+|.++..+++..+. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 33455555 567789999999999999999998653 45999999 999887765 4789999999987 444
No 268
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.25 E-value=1.8e-06 Score=86.88 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=73.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---C-CCccEEEec
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-------T-ENLKYIAGDMFQY---I-PPADAYFFK 260 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~ri~~~~~D~~~~---~-p~~D~i~~~ 260 (360)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++.+|+++. . ..||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 467899999999999999988742 346999999 888887764 2 5899999999772 2 359999984
Q ss_pred cccc--------cCC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 261 LVFH--------AFG-DEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 261 ~~lh--------~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
-..+ .+. .....++++.+.++|+| ||.|++..
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 3211 111 23456789999999999 88887544
No 269
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.24 E-value=9.4e-07 Score=77.69 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=60.9
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCC---
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQ-YIPP--- 253 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~-~~p~--- 253 (360)
..+++... ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 34455554 5667899999999999999 64 444334999999 999887764 2589999999977 4432
Q ss_pred ---ccEEEeccccccCChhHHHHHH
Q 018116 254 ---ADAYFFKLVFHAFGDEDCLKIL 275 (360)
Q Consensus 254 ---~D~i~~~~~lh~~~~~~~~~~L 275 (360)
.+.+++.+.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2345556665555554443444
No 270
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.24 E-value=2e-05 Score=72.08 Aligned_cols=143 Identities=10% Similarity=0.079 Sum_probs=104.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCC---------------------------CCCeEEEeCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQ---------------------------TENLKYIAGD 246 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~ri~~~~~D 246 (360)
.+...||.+|||.......+...+++++++-+|.|.+++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4678999999999999999999888999999999887653221 3789999999
Q ss_pred CCC-CC----------C-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhh
Q 018116 247 MFQ-YI----------P-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLG 314 (360)
Q Consensus 247 ~~~-~~----------p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~ 314 (360)
+.+ ++ + ...++++-.+|++++.+++.++|+.+.+.+ | +|.+++.|.+.+..... .+.. ....
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~-~fg~-~m~~ 249 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPND-RFGA-IMQS 249 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTC-CHHH-HHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcc-hHHH-HHHH
Confidence 987 22 1 267888899999999999999999999987 5 68999999988732211 1211 1111
Q ss_pred hhhh-hcc-c-C-CcccCHHHHHHHHHHCCCc
Q 018116 315 DTLM-SVS-V-D-GKERTDEEWKTLFLDAGFT 342 (360)
Q Consensus 315 d~~~-~~~-~-~-g~~~t~~e~~~ll~~aGf~ 342 (360)
.+.. ... . + ....+.++..+.|.++||.
T Consensus 250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1111 111 1 1 2345889999999999997
No 271
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.19 E-value=2.8e-06 Score=75.72 Aligned_cols=97 Identities=13% Similarity=0.243 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC----CCccEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ-----------TENLKYIAGDMFQYI----PPADAY 257 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~ri~~~~~D~~~~~----p~~D~i 257 (360)
...++||-||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+-. ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998777789999999 999886652 689999999998732 259999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 018116 258 FFKLVFHAFGDE---DCLKILKKCREAIAGNGERGKVLIM 294 (360)
Q Consensus 258 ~~~~~lh~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 294 (360)
+.-.. ...... --..+++.++++|+| ||.++..
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence 86321 111110 013689999999999 7766654
No 272
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.15 E-value=3.2e-06 Score=83.22 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=84.8
Q ss_pred ChhHHhhcCCcHHHHHHHHhhhCcchhHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-------------CCCe
Q 018116 155 NYWDYMNQNPGLSQRFNQAMISDSEMAIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-------------PGIK 221 (360)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-------------p~~~ 221 (360)
..|+.+.+|+.....|.+++... +...+. ...+...|+|||||+|-++...+++. ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGA-------LKDLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH-------HHHHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHH-------HHHhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 45788888888777777766532 111111 01235689999999999974332221 2348
Q ss_pred EEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC------C-CccEEEeccccccCChhHHHHHHHHHHHhccCCC
Q 018116 222 CTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI------P-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNG 286 (360)
Q Consensus 222 ~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~------p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~ 286 (360)
++++|- +.++...+. .++|+++.+|+.+ .. + .+|+|++-..=.....+-...+|..+.+.|+|
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp-- 526 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP-- 526 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT--
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC--
Confidence 999998 544432221 6889999999987 34 4 69999986654444455556788888999999
Q ss_pred CCcEEE
Q 018116 287 ERGKVL 292 (360)
Q Consensus 287 ~gG~ll 292 (360)
||.++
T Consensus 527 -~Gi~i 531 (745)
T 3ua3_A 527 -TTISI 531 (745)
T ss_dssp -TCEEE
T ss_pred -CcEEE
Confidence 77543
No 273
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.15 E-value=2.6e-06 Score=75.05 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=81.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHH-------CCC-----CeEEEeec-h---HHHhcC-----------C------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA-------FPG-----IKCTVLDL-P---HAVANM-----------P------------ 235 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a-----------~------------ 235 (360)
+..+|||||+|+|..+..+++. .|+ +++++++. | +.+..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887664 574 58999997 5 222211 0
Q ss_pred ------C--CCCeEEEeCCCCC--C-CC-----CccEEEecc-ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 236 ------Q--TENLKYIAGDMFQ--Y-IP-----PADAYFFKL-VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 236 ------~--~~ri~~~~~D~~~--~-~p-----~~D~i~~~~-~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
. ..++++..+|+.+ + .+ .||+|++-- .-..-|+-.-..+|+.+++.|+| ||.|+...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tys--- 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFT--- 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESC---
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEe---
Confidence 1 2457788999865 2 22 599998732 11101110124689999999999 88776411
Q ss_pred CCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEE
Q 018116 299 NEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEV 358 (360)
Q Consensus 299 ~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 358 (360)
....+++.|.++||.+.++...+....++.+
T Consensus 214 -----------------------------aa~~vrr~L~~aGF~v~~~~g~~~kr~m~~a 244 (257)
T 2qy6_A 214 -----------------------------SAGFVRRGLQEAGFTMQKRKGFGRKREMLCG 244 (257)
T ss_dssp -----------------------------CBHHHHHHHHHHTEEEEEECCSTTCCCEEEE
T ss_pred -----------------------------CCHHHHHHHHHCCCEEEeCCCCCCCCceEEE
Confidence 0124667788899997766555444445444
No 274
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.07 E-value=5.3e-06 Score=73.15 Aligned_cols=71 Identities=13% Similarity=0.259 Sum_probs=55.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-h-------HHHhcCCC-------CCCeEEEeCCCCCC---C---
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-P-------HAVANMPQ-------TENLKYIAGDMFQY---I--- 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~ri~~~~~D~~~~---~--- 251 (360)
..+..+|||+|||+|..+..+++. +.+++++|+ + .+++.++. .+|++++.+|+.+. +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345679999999999999999986 679999999 8 77776653 35799999998762 2
Q ss_pred -CCccEEEecccccc
Q 018116 252 -PPADAYFFKLVFHA 265 (360)
Q Consensus 252 -p~~D~i~~~~~lh~ 265 (360)
..||+|++.-.+++
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 36999998655544
No 275
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.05 E-value=5.2e-06 Score=72.73 Aligned_cols=106 Identities=18% Similarity=0.251 Sum_probs=68.3
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCC-eEEEeC-CCCC-CCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TEN-LKYIAG-DMFQ-YIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~r-i~~~~~-D~~~-~~p~~ 254 (360)
.++.+++. +.+..+|||+|||.|.++...++..+..+++++|+ ......+.. ..+ +.+... |+.. +...+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 44555554 67788999999999999999888777667888888 433232221 223 333333 4433 22359
Q ss_pred cEEEeccccc----cCChhHHHHHHHHHHHhccCCCCC--cEEEE
Q 018116 255 DAYFFKLVFH----AFGDEDCLKILKKCREAIAGNGER--GKVLI 293 (360)
Q Consensus 255 D~i~~~~~lh----~~~~~~~~~~L~~~~~~L~p~~~g--G~lli 293 (360)
|+|++-...+ ..+......+|+-+.++|+| | |.+++
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~ 199 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI 199 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence 9999865544 11122233568888899999 7 77766
No 276
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.01 E-value=2.6e-06 Score=79.36 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C--------------
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQY---I-------------- 251 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~~---~-------------- 251 (360)
..+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .++++|+.+|+.+. .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 478999999999999999875 458999999 889887763 35899999998651 1
Q ss_pred --CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 252 --PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 252 --p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
..||+|++.- |. ..+..++.+.|++ +|+++.+..
T Consensus 292 ~~~~fD~Vv~dP-----Pr---~g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDP-----PR---SGLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECC-----CT---TCCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECc-----Cc---cccHHHHHHHHhC---CCEEEEEEC
Confidence 1589998631 11 1234455666677 788877653
No 277
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.99 E-value=1.6e-05 Score=79.96 Aligned_cols=110 Identities=9% Similarity=0.045 Sum_probs=76.3
Q ss_pred HHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHH------------------------------------------CCC
Q 018116 182 IFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEA------------------------------------------FPG 219 (360)
Q Consensus 182 ~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~------------------------------------------~p~ 219 (360)
+..++.... +.+...|||.+||+|.+++..+.. .+.
T Consensus 179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 344555555 456789999999999999887764 133
Q ss_pred CeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC----CccEEEecccccc-C-ChhHHHHHHHHHHHhcc-
Q 018116 220 IKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-YIP----PADAYFFKLVFHA-F-GDEDCLKILKKCREAIA- 283 (360)
Q Consensus 220 ~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~~p----~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~- 283 (360)
.+++|+|+ +.+++.|+. .++|+|..+|+.+ ..| .||+|+++=-... + .+++...+.+.+.+.|+
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 68999999 999987764 4569999999976 222 6999998633221 1 23445555655555544
Q ss_pred --CCCCCcEEEEEee
Q 018116 284 --GNGERGKVLIMDI 296 (360)
Q Consensus 284 --p~~~gG~lli~e~ 296 (360)
| ||++.|+..
T Consensus 337 ~~~---g~~~~ilt~ 348 (703)
T 3v97_A 337 QFG---GWNLSLFSA 348 (703)
T ss_dssp HCT---TCEEEEEES
T ss_pred hCC---CCeEEEEeC
Confidence 6 899988754
No 278
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.97 E-value=9.1e-06 Score=75.69 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-----------------CCeEEEeCCCCCC--
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T-----------------ENLKYIAGDMFQY-- 250 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----------------~ri~~~~~D~~~~-- 250 (360)
++.+|||+|||+|..++.++++.+..+++++|+ +.+++.+++ . .+++++.+|+...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 468999999999999999999988889999999 888766553 1 2388999998652
Q ss_pred -CC-CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 251 -IP-PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 251 -~p-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+ .||+|++. ... + ...+|..+.+.|+| ||.|++.-
T Consensus 127 ~~~~~fD~I~lD-P~~--~---~~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLD-PFG--S---PMEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEEC-CSS--C---CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeC-CCC--C---HHHHHHHHHHhcCC---CCEEEEEe
Confidence 23 59999853 211 1 24678999999999 88666643
No 279
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.89 E-value=3.9e-05 Score=69.39 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=54.5
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--C---CCccEEE
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-Y--I---PPADAYF 258 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~--~---p~~D~i~ 258 (360)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+++++.+|+.+ + . ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999875 5679999999 888776653 3579999999866 2 1 2599998
Q ss_pred e
Q 018116 259 F 259 (360)
Q Consensus 259 ~ 259 (360)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
No 280
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.84 E-value=0.00012 Score=67.15 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC---CccEEEeccccccCChh
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQYIP---PADAYFFKLVFHAFGDE 269 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~~~p---~~D~i~~~~~lh~~~~~ 269 (360)
+.++.++||+||++|+++..++++ +.+++++|..++.......++|+++.+|.+...| .+|+|++-.+.+ .
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p- 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---P- 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---H-
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---h-
Confidence 568899999999999999999987 7899999985554444447899999999988322 599998855542 2
Q ss_pred HHHHHHHHHHHhccC
Q 018116 270 DCLKILKKCREAIAG 284 (360)
Q Consensus 270 ~~~~~L~~~~~~L~p 284 (360)
..++.-+.++|..
T Consensus 283 --~~~~~l~~~wl~~ 295 (375)
T 4auk_A 283 --AKVAALMAQWLVN 295 (375)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred --HHhHHHHHHHHhc
Confidence 2445555566655
No 281
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.83 E-value=6.1e-06 Score=76.99 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=70.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCC--C--CC-CccEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPG-IKCTVLDL-PHAVANMPQ-------TEN-LKYIAGDMFQ--Y--IP-PADAYF 258 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~r-i~~~~~D~~~--~--~p-~~D~i~ 258 (360)
.++.+|||++||+|.+++.++++.++ .+++++|+ +.+++.+++ .++ ++++.+|.++ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 45789999999999999999998765 57999999 888877764 345 9999999865 2 22 599998
Q ss_pred eccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 259 FKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 259 ~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
+-- +.. ...+++.+.+.|+| ||.|++..
T Consensus 131 lDP----~g~--~~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 131 LDP----FGT--PVPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp ECC----SSC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECC----CcC--HHHHHHHHHHHhCC---CCEEEEEe
Confidence 743 111 13578899999999 78665544
No 282
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.80 E-value=3.2e-05 Score=75.46 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=72.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC------------------CCeEEEeec-hHHHhcCCC------CC-----CeEEE
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP------------------GIKCTVLDL-PHAVANMPQ------TE-----NLKYI 243 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~-----ri~~~ 243 (360)
.+..+|+|.+||+|.++..+.+... ..+++|+|+ +.+++.|+. .. ++++.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4567999999999999988877532 247999999 888776652 22 27899
Q ss_pred eCCCCC-C---CCCccEEEeccccccCCh------------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 244 AGDMFQ-Y---IPPADAYFFKLVFHAFGD------------EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 244 ~~D~~~-~---~p~~D~i~~~~~lh~~~~------------~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
++|.+. + ...||+|+++-.+..... ..-..++.++.+.|+| ||++.++-+
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence 999887 2 246999998644432211 1124689999999999 999887643
No 283
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.76 E-value=0.0012 Score=60.12 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=103.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHH-CCCCeEEEeechHHHhcCC-----------------------------CCCCeEEEe
Q 018116 195 GLGSIVDVGGGNGGFSKIISEA-FPGIKCTVLDLPHAVANMP-----------------------------QTENLKYIA 244 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~ri~~~~ 244 (360)
+...||-+|||.=.....+... .++++++=+|.|++++.=+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5689999999999888888775 3678999999988765200 157899999
Q ss_pred CCCCC--CC---------C--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHh
Q 018116 245 GDMFQ--YI---------P--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAK 311 (360)
Q Consensus 245 ~D~~~--~~---------p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~ 311 (360)
.|+.+ .+ . ..=++++-.+|.+++.+++.++|+.+.+..++ |.+++.|.+.+... +.. .
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d~----fg~-~ 240 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGDR----FGQ-I 240 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTSH----HHH-H
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCCH----HHH-H
Confidence 99976 11 1 14467888899999999999999999998765 88888899865421 211 1
Q ss_pred Hhhhhhhhcc-cCC--cccCHHHHHHHHHHCCCceeEEEee
Q 018116 312 LLGDTLMSVS-VDG--KERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 312 ~~~d~~~~~~-~~g--~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....+..... ..+ ...+.++..+.|.++||+.+++.++
T Consensus 241 M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1111111111 111 2347888899999999998877665
No 284
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.70 E-value=9.3e-05 Score=65.28 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-CCeEEEeC-CCCC-CCCCccEEEeccccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T-ENLKYIAG-DMFQ-YIPPADAYFFKLVFH 264 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~ri~~~~~-D~~~-~~p~~D~i~~~~~lh 264 (360)
+.+..+|||+||++|+++..+++..+-..++++|+ ......... . +-+.+..+ |++. ....+|+|++-..-+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 56789999999999999999998766567888888 332222111 1 23444433 4443 223699999854443
Q ss_pred ----cCChhHHHHHHHHHHHhccCCCCC-cEEEE
Q 018116 265 ----AFGDEDCLKILKKCREAIAGNGER-GKVLI 293 (360)
Q Consensus 265 ----~~~~~~~~~~L~~~~~~L~p~~~g-G~lli 293 (360)
..+......+|+-+.++|+| | |.+++
T Consensus 159 sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~ 189 (300)
T 3eld_A 159 SSNPLVERDRTMKVLENFERWKHV---NTENFCV 189 (300)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence 11111224568888899999 8 87776
No 285
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.67 E-value=0.00022 Score=64.39 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=94.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC------CC-----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMP---------QTENLKYIAGDMFQYI------PP----- 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~ri~~~~~D~~~~~------p~----- 253 (360)
.+...||++|||-=.....+.. .++++++-+|.|.+++..+ ..++..++..|+.+.+ .+
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 3556899999998877655542 1258999999988876432 2678999999997631 12
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhh-h-hhhhc-----c-cCCc
Q 018116 254 ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLG-D-TLMSV-----S-VDGK 325 (360)
Q Consensus 254 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-d-~~~~~-----~-~~g~ 325 (360)
-=++++-.++|++++++..++|+.+.+.+.| |..+++|.+.++.... ......+. . +.... . .+..
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~ 253 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELI 253 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCSHH--HHHHHHHHHHHHC-----------CCT
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCccccc
Confidence 3357888899999999999999999998888 5556667765543111 00001111 1 10000 0 0112
Q ss_pred c-cC-HHHHHHHHHHCCCcee
Q 018116 326 E-RT-DEEWKTLFLDAGFTHY 344 (360)
Q Consensus 326 ~-~t-~~e~~~ll~~aGf~~~ 344 (360)
. ++ .++..++|.+.||+.+
T Consensus 254 ~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 254 YHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCTTCCCHHHHHTTTTEEEE
T ss_pred cCCCChHHHHHHHHHCcCccc
Confidence 2 25 7889999999999887
No 286
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.63 E-value=5.2e-05 Score=66.63 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=53.5
Q ss_pred cCCC--CEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHH-------HhcCC----C-C---CCeEEEeCCCCC---CC
Q 018116 193 FEGL--GSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHA-------VANMP----Q-T---ENLKYIAGDMFQ---YI 251 (360)
Q Consensus 193 ~~~~--~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~----~-~---~ri~~~~~D~~~---~~ 251 (360)
..++ .+|||+|||+|..+..++.+ +.+++++|. +.+ ++.++ . . +|++++.+|..+ ..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 79999999999999999998 668999999 654 33221 1 1 579999999865 23
Q ss_pred C-CccEEEecccccc
Q 018116 252 P-PADAYFFKLVFHA 265 (360)
Q Consensus 252 p-~~D~i~~~~~lh~ 265 (360)
+ .||+|++--..++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 3 5999998766554
No 287
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.58 E-value=0.00013 Score=64.25 Aligned_cols=75 Identities=24% Similarity=0.229 Sum_probs=59.7
Q ss_pred hHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-C------
Q 018116 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-Y------ 250 (360)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~------ 250 (360)
+.+.+++.+. ..+...+||.+||.|+.+..++++ +.+++++|. |.+++.+++ .+|++++.+|+.+ +
T Consensus 10 Ll~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~ 85 (285)
T 1wg8_A 10 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 85 (285)
T ss_dssp THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence 3466677776 667889999999999999999998 789999999 888765532 3699999999865 1
Q ss_pred -CCCccEEEe
Q 018116 251 -IPPADAYFF 259 (360)
Q Consensus 251 -~p~~D~i~~ 259 (360)
...+|.|++
T Consensus 86 g~~~vDgIL~ 95 (285)
T 1wg8_A 86 GVERVDGILA 95 (285)
T ss_dssp TCSCEEEEEE
T ss_pred CCCCcCEEEe
Confidence 135888886
No 288
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.57 E-value=0.00022 Score=60.55 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=72.6
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC--C---CCCeEEEeC-CCCC-CCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP--Q---TENLKYIAG-DMFQ-YIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~---~~ri~~~~~-D~~~-~~p~~ 254 (360)
..+.+++. +.+..+|||+||++|.++...+....-.++.++|+ +.-.+... + -+.|+|+.+ |++. +...+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 44555554 67788999999999999998888776668999999 33333222 1 478999999 9765 33359
Q ss_pred cEEEeccccccCC-h--h-HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 018116 255 DAYFFKLVFHAFG-D--E-DCLKILKKCREAIAGNGERGKVLIMDIVINE 300 (360)
Q Consensus 255 D~i~~~~~lh~~~-~--~-~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~ 300 (360)
|+++|--.=..=+ . + ...++|.-+.++|++ |.+++ -...+.
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~----~~fc~-KVl~py 190 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN----NQFCI-KVLNPY 190 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE-EESCCC
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc----CCEEE-EEccCC
Confidence 9998733221111 1 1 123467777899987 55655 443333
No 289
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.53 E-value=3.6e-05 Score=71.98 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=53.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C----CCeEEEeCCCCCC--C---CCccEEEe
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----T----ENLKYIAGDMFQY--I---PPADAYFF 259 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~ri~~~~~D~~~~--~---p~~D~i~~ 259 (360)
.++.+|||+|||+|..+..+++. ..+++++|+ +.+++.++. . ++++++++|+.+. . ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34789999999999999999887 579999999 888887753 1 5799999999873 2 26999998
No 290
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.51 E-value=0.0003 Score=70.50 Aligned_cols=100 Identities=10% Similarity=0.047 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCC---CCeEEEeec-hHHHhcC--C----C------CCCeEEEeCCCCCC----CCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFP---GIKCTVLDL-PHAVANM--P----Q------TENLKYIAGDMFQY----IPP 253 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~------~~ri~~~~~D~~~~----~p~ 253 (360)
.+..+|+|.|||+|.++..+++..+ ..++.|+|+ +.+++.| + . .....+...|+..+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999998876 357999999 7777665 1 0 12245666676652 236
Q ss_pred ccEEEecccccc-CC-hhH-------------------------HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 254 ADAYFFKLVFHA-FG-DED-------------------------CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 254 ~D~i~~~~~lh~-~~-~~~-------------------------~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
||+|+++=-... +. +.. ...+++++.+.|+| ||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 999998543311 11 111 23468889999999 999887554
No 291
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.44 E-value=0.00032 Score=60.53 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=61.8
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHH--HhcCCC-CCCe---EEEeC-CCCCCCC-Cc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHA--VANMPQ-TENL---KYIAG-DMFQYIP-PA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~--~~~a~~-~~ri---~~~~~-D~~~~~p-~~ 254 (360)
.++-+++ .+++..+|||+||+.|+++...++.-+-..+.+.++... +..... ...+ .|..+ |+++..+ .+
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~ 140 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS 140 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence 3444554 378899999999999999998887521112234433111 111111 1344 55557 9987433 69
Q ss_pred cEEEecccc---ccCChh-HHHHHHHHHHHhccCCCCCc-EEEE
Q 018116 255 DAYFFKLVF---HAFGDE-DCLKILKKCREAIAGNGERG-KVLI 293 (360)
Q Consensus 255 D~i~~~~~l---h~~~~~-~~~~~L~~~~~~L~p~~~gG-~lli 293 (360)
|+|++=..- +..-|. ....+|.-+.++|+| || .+++
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 999873321 111111 122357777799999 78 6666
No 292
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.44 E-value=0.00048 Score=57.93 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=61.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC-------------
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ---------TENLKYIAGDMFQY------------- 250 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~ri~~~~~D~~~~------------- 250 (360)
.+.++|||+||| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 456899999985 55555665 45789999998 776665542 45899999995421
Q ss_pred -----------C---CCccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 251 -----------I---PPADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 251 -----------~---p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
. ..||+|++-.- .....+..+.+.|+| ||.| |+|.+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~---GG~I-v~DNv 155 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITR---PVTL-LFDDY 155 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSS---CEEE-EETTG
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCC---CeEE-EEeCC
Confidence 1 24999987431 123556667788999 6655 66654
No 293
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.41 E-value=5.6e-05 Score=85.85 Aligned_cols=142 Identities=14% Similarity=0.150 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCC-----CeEEEeec-hHHHhcCCCC---CCeEEEeCCCCCC---CC-CccEEEecc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPG-----IKCTVLDL-PHAVANMPQT---ENLKYIAGDMFQY---IP-PADAYFFKL 261 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~ri~~~~~D~~~~---~p-~~D~i~~~~ 261 (360)
+..+||+||+|+|..+..+++.... .+++..|. +...+.+++. -.++....|...+ .+ +||+|++.+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4569999999999887777766542 36888888 6666666541 1233322333222 22 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCC
Q 018116 262 VFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGF 341 (360)
Q Consensus 262 ~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 341 (360)
+||.-++ ....|+++++.|+| ||++++.+......-.. ...+.... ........+.++|.++|+++||
T Consensus 1320 vl~~t~~--~~~~l~~~~~lL~p---~G~l~~~e~~~~~~~g~-----~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1320 ALATLGD--PAVAVGNMAATLKE---GGFLLLHTLLAGHPLGE-----MVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred ccccccc--HHHHHHHHHHhcCC---CcEEEEEeccccccccc-----cccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence 9985443 45789999999999 99999877543110000 00000000 0001223467889999999999
Q ss_pred ceeEEEe
Q 018116 342 THYKITN 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
+.+....
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 8876643
No 294
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.40 E-value=0.00041 Score=60.90 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=68.5
Q ss_pred HHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC---C--CCCeEEEeC-CCCC-CCCCc
Q 018116 183 FIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP---Q--TENLKYIAG-DMFQ-YIPPA 254 (360)
Q Consensus 183 ~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~--~~ri~~~~~-D~~~-~~p~~ 254 (360)
..+.+.+. +.+..+|||+||++|.++...+....-.++.++|+ ..-.+... . -+-|.|+.+ |++. +...+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 34455544 66778999999999999998887765557999998 33222111 1 244889988 8766 33459
Q ss_pred cEEEeccccccCChh-----HHHHHHHHHHHhccCCCCC-cEEEE
Q 018116 255 DAYFFKLVFHAFGDE-----DCLKILKKCREAIAGNGER-GKVLI 293 (360)
Q Consensus 255 D~i~~~~~lh~~~~~-----~~~~~L~~~~~~L~p~~~g-G~lli 293 (360)
|+|+|--. .--+.+ ...++|.-+.++|++ | |.+++
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence 99887332 211221 123467777899998 5 66666
No 295
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.37 E-value=0.00016 Score=66.52 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEeCCCCCC-------C
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ--------------TENLKYIAGDMFQY-------I 251 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~ri~~~~~D~~~~-------~ 251 (360)
.++++||-||+|.|..+..+++. |..+++.+|+ +.+++.+++ .+|++++.+|...- .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 35689999999999999999974 5579999999 998876542 35799999998651 1
Q ss_pred CCccEEEeccccc-------cCCh-hHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 252 PPADAYFFKLVFH-------AFGD-EDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 252 p~~D~i~~~~~lh-------~~~~-~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
..||+|+.--.=. .... .-...+++.++++|+| ||.++.
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~ 329 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFT 329 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 2599998632110 0011 1124678999999999 776654
No 296
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.32 E-value=0.00057 Score=66.47 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC---CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCC-CC-----CccE
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF---PGIKCTVLDL-PHAVANMPQ--------TENLKYIAGDMFQY-IP-----PADA 256 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~--------~~ri~~~~~D~~~~-~p-----~~D~ 256 (360)
...+|+|.+||+|.++..+++.. +..++.|+|+ +.+...++. .+++.+..+|.+.. +| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999998885 3678999999 887776652 25788999998863 22 4999
Q ss_pred EEeccccc-cCC------------------h--hHHHHHHHHHHHhcc-CCCCCcEEEEEe
Q 018116 257 YFFKLVFH-AFG------------------D--EDCLKILKKCREAIA-GNGERGKVLIMD 295 (360)
Q Consensus 257 i~~~~~lh-~~~------------------~--~~~~~~L~~~~~~L~-p~~~gG~lli~e 295 (360)
|+++=-+. .|. . ..-..+++++.+.|+ | ||++.++-
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVL 358 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEe
Confidence 99752111 111 0 001248999999999 8 99987754
No 297
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.32 E-value=0.00016 Score=70.56 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHCC---------------CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFP---------------GIKCTVLDL-PHAVANMPQ-------TENLKYIAGDMFQ-Y- 250 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~-------~~ri~~~~~D~~~-~- 250 (360)
..+|+|.+||+|.++..+++..+ ..++.|+|+ +.++..|+. ..++.+..+|.+. +
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 34999999999999988765432 568999999 888776652 2345558888876 3
Q ss_pred CC--CccEEEeccccc--cCChh-------------------------HHHHHHHHHHHhccCCCCCcEEEEEe
Q 018116 251 IP--PADAYFFKLVFH--AFGDE-------------------------DCLKILKKCREAIAGNGERGKVLIMD 295 (360)
Q Consensus 251 ~p--~~D~i~~~~~lh--~~~~~-------------------------~~~~~L~~~~~~L~p~~~gG~lli~e 295 (360)
.+ .||+|+++=-+. .|..+ .-..+++++.+.|+| ||++.++-
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVl 395 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLL 395 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEe
Confidence 22 599999843322 12111 112589999999999 99987764
No 298
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.14 E-value=0.0003 Score=53.09 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=53.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCC
Q 018116 40 ELGIADIIHSHGRPITLSELVSAL--KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDK 113 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~--~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~ 113 (360)
+..|++.|... ++.|+.+||+.+ ++ +...+.+.|+.|...|+|+..+ .+.|++|+.+..+....
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~------rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA------NGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS------TTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC------CceEEECchHHHHHHHH
Confidence 46678888653 799999999999 99 5689999999999999999875 46899999998555443
No 299
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.08 E-value=0.00024 Score=48.47 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=45.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
+..|++.|...+.++|..|||+.+|+ +...+.+.+..|...|++.... .+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC------CceEeeC
Confidence 45677888653368999999999999 5789999999999999998754 4778764
No 300
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.95 E-value=0.0012 Score=48.37 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=51.9
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
.+|..-.++.|+..| . ++.++.|||+.+++ +...+.+.|+.|...|++.+.. +.|++++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~-------g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG-------ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC-------CEEEECCCch
Confidence 445555677888989 5 78999999999999 5688999999999999999874 5899988654
No 301
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.78 E-value=0.002 Score=47.74 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=50.9
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.+|.--.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++..... |....|++++.
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~ 82 (102)
T 3pqk_A 18 KTLSHPVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRN---IKQIFYRLTEA 82 (102)
T ss_dssp HHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECS---SSCCEEEECSS
T ss_pred HHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECcH
Confidence 45555566777888865 79999999999999 56899999999999999987652 22345888774
No 302
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.74 E-value=0.003 Score=56.96 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=61.6
Q ss_pred hHHHHHHHhhhhcCCCCEEEEeCCCCchHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-C-----
Q 018116 181 AIFIVKDCCRKIFEGLGSIVDVGGGNGGFSKIISEAF-PGIKCTVLDL-PHAVANMPQ--TENLKYIAGDMFQ-Y----- 250 (360)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~iLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~----- 250 (360)
+.+++++.+. ..++..+||..||.|+.+..++++. |+.+++++|. +.+++.++. .+|++++.+++.+ .
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHH
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 4466777776 6778999999999999999999985 7889999999 888887643 5789999998755 1
Q ss_pred --CC-CccEEEec
Q 018116 251 --IP-PADAYFFK 260 (360)
Q Consensus 251 --~p-~~D~i~~~ 260 (360)
++ .+|.|++-
T Consensus 123 ~g~~~~vDgILfD 135 (347)
T 3tka_A 123 RDLIGKIDGILLD 135 (347)
T ss_dssp TTCTTCEEEEEEE
T ss_pred cCCCCcccEEEEC
Confidence 12 37777663
No 303
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.58 E-value=0.0016 Score=45.76 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=49.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcc-cHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTS-NLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+-.|++.|... +|.|+.+||+.+|++ .. .+++.|..|...|+|++.+.+ .-.|++|+.+.
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgit---~~~aVr~hL~~Le~eGlV~~~~~g----RP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGLT---KARDINAVLIDMERQGDVYRQGTT----PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCGG---GHHHHHHHHHHHHHTTSEEEECSS----SCEEEECHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCCC---cHHHHHHHHHHHHHCCCEEecCCC----CCCeEeCHhHH
Confidence 45667778774 799999999999994 56 899999999999999876521 34799999876
No 304
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.57 E-value=0.0073 Score=53.50 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=65.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-----CCCeEEEeec-hHH--------------------------HhcCCC-----
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-----PGIKCTVLDL-PHA--------------------------VANMPQ----- 236 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~--------------------------~~~a~~----- 236 (360)
....+|||+|+..|..++.++... ++.+++++|. ... .+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346799999999999998887764 4788999984 211 111111
Q ss_pred ---CCCeEEEeCCCCCC---CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 237 ---TENLKYIAGDMFQY---IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 237 ---~~ri~~~~~D~~~~---~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.++|+++.||+.+. .+ .+|+|++=.-.+ +.....|..+...|+| | .++|+|.+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~p---G-GiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSV---G-GYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEE---E-EEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCC---C-EEEEEcCC
Confidence 38999999999662 32 488887643211 2245789999999999 4 56666544
No 305
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.47 E-value=0.0017 Score=57.59 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=49.1
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|+.|+..|++.++. +++|++++....|
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~------~~~Y~LG~~~~~l 92 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA------DGTLRIGPHSLRW 92 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT------TSEEEECTHHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCcEEehHHHHHH
Confidence 5678888765468999999999999 4688999999999999999986 4789999865433
No 306
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.42 E-value=0.011 Score=52.77 Aligned_cols=130 Identities=20% Similarity=0.195 Sum_probs=74.7
Q ss_pred CCCCEEEEeCCCCchHHHH----HHHHCCCCeE--EEeechHHHhcCC------------------C--CCCe--EEEeC
Q 018116 194 EGLGSIVDVGGGNGGFSKI----ISEAFPGIKC--TVLDLPHAVANMP------------------Q--TENL--KYIAG 245 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~----l~~~~p~~~~--~~~D~~~~~~~a~------------------~--~~ri--~~~~~ 245 (360)
.+.-+|+|+|=|+|..... +.+..|..++ +.++. ..+.... . ..+| ++..+
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G 173 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG 173 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence 4457899999999985533 2345677654 44442 1111100 0 2344 55678
Q ss_pred CCCC---CCC--CccEEEecccc-ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhh
Q 018116 246 DMFQ---YIP--PADAYFFKLVF-HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMS 319 (360)
Q Consensus 246 D~~~---~~p--~~D~i~~~~~l-h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 319 (360)
|+.+ .++ .+|++++=..- ..-|+=.-..++++++++++| ||.+.-.
T Consensus 174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTY------------------------- 225 (308)
T 3vyw_A 174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSY------------------------- 225 (308)
T ss_dssp CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEES-------------------------
T ss_pred hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEE-------------------------
Confidence 8765 233 48888763211 111111224689999999999 7765320
Q ss_pred cccCCcccCHHHHHHHHHHCCCceeEEEeeCCceeEEEEe
Q 018116 320 VSVDGKERTDEEWKTLFLDAGFTHYKITNVFGLKSLIEVY 359 (360)
Q Consensus 320 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
-....+++.|+++||.+.++...++-.-++.+.
T Consensus 226 -------taag~VRR~L~~aGF~V~k~~G~g~KReml~A~ 258 (308)
T 3vyw_A 226 -------SSSLSVRKSLLTLGFKVGSSREIGRKRKGTVAS 258 (308)
T ss_dssp -------CCCHHHHHHHHHTTCEEEEEECC---CEEEEEE
T ss_pred -------eCcHHHHHHHHHCCCEEEecCCCCCCCceeEEe
Confidence 023567788999999988887766554555543
No 307
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.42 E-value=0.003 Score=47.26 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=47.8
Q ss_pred cchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 43 IADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
|+..|.. ++.+..||++.+ ++ ++..+.+.|+.|...|++++.....++-.-.|++|+.|..+.
T Consensus 19 IL~~L~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 19 ILXHLTH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHTT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 3444443 799999999999 99 579999999999999999987532222123599999887554
No 308
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.42 E-value=0.0089 Score=46.84 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=59.0
Q ss_pred hhcchHHHHHHHHHHHHHHHHHH-----HHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec
Q 018116 14 ELFEGHGQVIRLVFNHLSAMSLK-----GAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK 88 (360)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~~~L~-----~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~ 88 (360)
++.....++...+.......+-. ...++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++
T Consensus 8 ~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r 83 (142)
T 3ech_A 8 DLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRR 83 (142)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEee
Confidence 34444555555444333333222 24567788888774 79999999999999 56899999999999999998
Q ss_pred cccCCCCcccceecchhhhhhhc
Q 018116 89 TKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 89 ~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.....|+-.-.+.+|+.|..+..
T Consensus 84 ~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 84 ERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp ----------CCEECHHHHHHHH
T ss_pred ccCCCCCCeeeeEECHHHHHHHH
Confidence 75211111123789998885553
No 309
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.41 E-value=0.0019 Score=47.49 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=52.5
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+|.--.++.|+..|.. ++.|+.|||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~~ 83 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE---AQTVYYTLKSEE 83 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC---TTCCEEEECCHH
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECHHH
Confidence 45555667888888876 79999999999999 56899999999999999988752 223458887653
No 310
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.31 E-value=0.0021 Score=48.49 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=50.6
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+|..-.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++..... |....|++|+.+.
T Consensus 17 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~---gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 17 ALSDETRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKV---GREIRYRALGAEL 82 (114)
T ss_dssp HTTCHHHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHH
T ss_pred HhCChHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEec---CCEEEEEechHHH
Confidence 3333456777787854 78999999999999 56899999999999999988652 1123488888765
No 311
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.29 E-value=0.0019 Score=49.40 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 32 AMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 32 ~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
..+|.--.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|+|..... |....|++++.+.
T Consensus 12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~---gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQ---GRVRTCAIEKEPF 79 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHH
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEec---CCEEEEEECHHHH
Confidence 355566667888888875 79999999999999 57999999999999999987652 1134588888654
No 312
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.22 E-value=0.003 Score=48.55 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 32 AMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 32 ~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
..+|.--.++.|+..|... ++.|+.|||+.+|+ +...+.+.|+.|...|++..... |....|++++.+
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~---gr~~~y~l~~~~ 103 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE---GKLALYSLGDEH 103 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------CCEEEESCHH
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEE---CCEEEEEECHHH
Confidence 3455555678899988743 79999999999999 57999999999999999987652 112358887754
No 313
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.16 E-value=0.077 Score=53.27 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=101.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCC--------CCeEEEeechHHHhcCCC------------------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFP--------GIKCTVLDLPHAVANMPQ------------------------------ 236 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 236 (360)
+...||-+|||.=.....|...+| +++++=+|.|++++.=++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999987755 678888898877642100
Q ss_pred CCCeEEEeCCCCCC--C-----------CC-ccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 018116 237 TENLKYIAGDMFQY--I-----------PP-ADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVINEKE 302 (360)
Q Consensus 237 ~~ri~~~~~D~~~~--~-----------p~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~ 302 (360)
.++..++..|+.+. + ++ .=++++-.+|.+++.+++.++|+.+.+ + | ++.+++.|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 25899999999872 1 12 334677889999999999999999985 4 5 688999998876543
Q ss_pred cchhhhhHhHhhhhhhhcc-cC--CcccCHHHHHHHHHHCCCceeEEEee
Q 018116 303 DKHQVTEAKLLGDTLMSVS-VD--GKERTDEEWKTLFLDAGFTHYKITNV 349 (360)
Q Consensus 303 ~~~~~~~~~~~~d~~~~~~-~~--g~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
... +... ....+..... .. ....+.++..+.|.+.||..+....+
T Consensus 262 ~d~-f~~~-m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEP-FSKQ-MLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSH-HHHH-HHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCh-HHHH-HHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 321 2111 1111111100 01 12347899999999999987766544
No 314
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.14 E-value=0.0032 Score=46.18 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=54.1
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISAL 108 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 108 (360)
.++..-.++.|+..|... ++.|..|||+.+++ +...+.+.|+.|...|++.+.....++....|++|+.+..
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~ 82 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHH
Confidence 455556677788877642 68999999999999 5689999999999999998643111111346999998863
No 315
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.10 E-value=0.0031 Score=50.49 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 31 SAMSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 31 ~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
...+|.--.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|+|..... |....|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~---Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKD---GRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec---CCEEEEEEChHHH
Confidence 3466666778999999985 79999999999999 57999999999999999988752 1123599998765
No 316
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.05 E-value=0.0037 Score=45.74 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=51.6
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
++..-.++.|+..|.. +++.|..|||+.+|+ +...+.+.|+.|...|++..... |....|++++.+.
T Consensus 20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~---~r~~~y~l~~~~~ 86 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRD---AQRILYSIKNEAV 86 (99)
T ss_dssp HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC---SSCEEEEECCHHH
T ss_pred HhCChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec---CCEEEEEEChHHH
Confidence 4444556778888865 369999999999999 56899999999999999988752 1123488877653
No 317
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.03 E-value=0.006 Score=47.42 Aligned_cols=83 Identities=12% Similarity=0.021 Sum_probs=61.5
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCC
Q 018116 15 LFEGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGG 93 (360)
Q Consensus 15 ~~~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~ 93 (360)
..-+....++++.+-|...+|... .. ++.++.||++.+ |+ ++..|.+.|+.|...|+|++....+
T Consensus 12 ~~Cpi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~ 77 (131)
T 4a5n_A 12 EGSPVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQ 77 (131)
T ss_dssp -CCHHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred CCCcHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 344566777777777766666543 22 799999999999 99 5799999999999999999875321
Q ss_pred CCcccceecchhhhhhhc
Q 018116 94 EKEEEAYGLTAISALLIK 111 (360)
Q Consensus 94 ~~~~~~y~~t~~~~~l~~ 111 (360)
+.-...|++|+.|..|.+
T Consensus 78 d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SSCEEEEEECTTGGGGHH
T ss_pred CCCeEEEEECHhHHHHHH
Confidence 111235999999987764
No 318
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.01 E-value=0.02 Score=52.53 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=73.3
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEeCCCCC--C-CC-Ccc
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP------------QTENLKYIAGDMFQ--Y-IP-PAD 255 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~ri~~~~~D~~~--~-~p-~~D 255 (360)
..++.+|||+-+|.|+=+.++++..++..++.+|+ +.-++..+ ...++.+...|... . .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56788999999999999999998877778899998 54433221 14678899888765 1 23 599
Q ss_pred EEEe----cc----c-------cccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 018116 256 AYFF----KL----V-------FHAFGDED-------CLKILKKCREAIAGNGERGKVLIMDIVINEK 301 (360)
Q Consensus 256 ~i~~----~~----~-------lh~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~ 301 (360)
.|++ +. + ...+..++ -.++|+++.+.|+| ||+|+-........
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSHL 290 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCTT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCchh
Confidence 9986 21 1 12222222 24789999999999 88776555554443
No 319
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.99 E-value=0.0026 Score=55.90 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=50.3
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|+.|+..|++.++.. .++|++++....|
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-----~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-----ARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-----SSEEEECTTHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEcCHHHHHH
Confidence 4577788754478999999999999 56899999999999999999862 3789998865433
No 320
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.99 E-value=0.0046 Score=46.65 Aligned_cols=76 Identities=16% Similarity=0.265 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCC--HHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCC
Q 018116 18 GHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPIT--LSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGE 94 (360)
Q Consensus 18 ~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t--~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~ 94 (360)
+...+++.+.+.|...+|. .|.. ++.+ +.||++.+ |+ ++..+.+.|+.|...|+|++...
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~--- 78 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG--- 78 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES---
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec---
Confidence 4455666666666555554 3433 6777 99999999 99 57999999999999999998741
Q ss_pred Ccccceecchhhhhhhc
Q 018116 95 KEEEAYGLTAISALLIK 111 (360)
Q Consensus 95 ~~~~~y~~t~~~~~l~~ 111 (360)
-...|++|+.|..+.+
T Consensus 79 -r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 79 -QITTYALTEKGMNVRN 94 (111)
T ss_dssp -SSEEEEECHHHHHHHH
T ss_pred -CcEEEEECccHHHHHH
Confidence 1357999999986653
No 321
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.99 E-value=0.0056 Score=46.21 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=48.2
Q ss_pred cchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 43 IADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
|+..|.. ++.+..|||+.+ ++ +...+.+.|+.|...|+|++.....++-.-.|++|+.|..+.
T Consensus 27 IL~~L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 27 LMDELFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHHHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 4444544 689999999999 99 579999999999999999987532212123499999988554
No 322
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=95.97 E-value=0.016 Score=50.92 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=60.0
Q ss_pred cCCCCEEEEeCC------CCchHHHHHHHHCCC-CeEEEeechHHHhcCCCCCCeEEEeCCCCC-C-CCCccEEEecc--
Q 018116 193 FEGLGSIVDVGG------GNGGFSKIISEAFPG-IKCTVLDLPHAVANMPQTENLKYIAGDMFQ-Y-IPPADAYFFKL-- 261 (360)
Q Consensus 193 ~~~~~~iLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~-~-~p~~D~i~~~~-- 261 (360)
.+.+.+|||+|+ -.|.. .+.+..|. ..++.+|+.++...+. .++.+|+.+ . ...+|+|++=.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~-----~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD-----STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS-----EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC-----eEEEccccccccCCCCCEEEecCCC
Confidence 356789999996 56663 44455776 6999999954443321 458899765 2 23699998721
Q ss_pred -ccccCC------hhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 262 -VFHAFG------DEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 262 -~lh~~~------~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
.--+.. ..-+..+|.=+.+.|+| ||.+++
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvV 215 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAV 215 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEE
Confidence 111111 12366778888899999 888877
No 323
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.96 E-value=0.0039 Score=54.07 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=50.0
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.|++.|...+++.|+.|||+.+|+ +..-+.|+|+.|...|+++++.. +++|++++....|.
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-----~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-----AGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-----GCEEEECSHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----CCeEEECHHHHHHH
Confidence 4566777654358999999999999 56899999999999999999752 47899998665443
No 324
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.96 E-value=0.0039 Score=46.56 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=49.6
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+|..-.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 21 ~~l~~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~~---gr~~~y~l~~~~ 86 (106)
T 1r1u_A 21 KALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKRQ---GQSMIYSLDDIH 86 (106)
T ss_dssp HHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESSHH
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEEChHH
Confidence 34444456677777775 78999999999999 56899999999999999987652 112347776643
No 325
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.87 E-value=0.0075 Score=47.88 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.+..||++.+|+ +...+.+.|+.|...|++++.....++ ...|++|+.|..+.
T Consensus 36 g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence 68999999999999 579999999999999999987632223 34799999987554
No 326
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.86 E-value=0.0075 Score=46.92 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCC
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK 95 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 95 (360)
-+...+++++.+.|...+|.. |.. ++.+..||++.+ |+ ++..+.+.|+.|...|+|++.....++
T Consensus 23 c~~~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 23 CPSREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp CTHHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred CCHHHHHHHHcCCcHHHHHHH---------HHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 455666776666666555443 333 799999999999 79 579999999999999999986532111
Q ss_pred cccceecchhhhhhh
Q 018116 96 EEEAYGLTAISALLI 110 (360)
Q Consensus 96 ~~~~y~~t~~~~~l~ 110 (360)
-.-.|++|+.|..+.
T Consensus 89 r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 89 PHVEYSLTPLGEQVS 103 (131)
T ss_dssp CEEEEEECHHHHHHH
T ss_pred CeEEEEECccHHHHH
Confidence 123599999988665
No 327
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.85 E-value=0.0022 Score=48.20 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=49.1
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
+|..-.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++..... |....|++++.+
T Consensus 21 al~~~~r~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~---gr~~~y~l~~~~ 85 (108)
T 2kko_A 21 ALANGRRLQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARRE---GTRQYYRIAGED 85 (108)
T ss_dssp HHTTSTTHHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEEE---TTEEEEEESCHH
T ss_pred HhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEEChHH
Confidence 3333445667777764 79999999999999 56899999999999999987652 112357777654
No 328
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.85 E-value=0.0062 Score=53.04 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=49.1
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+++.|+.|||+.+|+ +...+.|+|+.|...|+++++. +++|++++....+
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~------~~~Y~lg~~~~~l 70 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK------DKRYVPGYKLIEY 70 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECTHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC------CCcEEECHHHHHH
Confidence 4566777654358999999999999 5689999999999999999984 5889998865433
No 329
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.81 E-value=0.02 Score=44.51 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=52.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++.+.....++-...|.+|+.|..+.
T Consensus 33 ~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 56677778653 68999999999999 578999999999999999987532222223599999998666
No 330
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.81 E-value=0.0062 Score=45.49 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeccccCCCC
Q 018116 17 EGHGQVIRLVFNHLSAMSLKGAVELGIADIIHSHGRPITLSELVSAL-KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK 95 (360)
Q Consensus 17 ~~~~~~~~~~~g~~~~~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~-~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 95 (360)
-+...+++.+.+.+...+|. .|.. ++.+..||++.+ |+ ++..+.+.|+.|...|+|++.....++
T Consensus 13 c~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CCHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 34555555555555544443 4433 789999999999 49 579999999999999999987532211
Q ss_pred cccceecchhhhhhh
Q 018116 96 EEEAYGLTAISALLI 110 (360)
Q Consensus 96 ~~~~y~~t~~~~~l~ 110 (360)
-.-.|.+|+.|..+.
T Consensus 79 r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 79 PRVEYSLTPLGEKVL 93 (107)
T ss_dssp CEEEEEECHHHHTTH
T ss_pred CeeEEEECccHHHHH
Confidence 123599999987554
No 331
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=95.77 E-value=0.0062 Score=53.41 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=48.6
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALL 109 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 109 (360)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|+.|...|++.++. +++|++++....|
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~------~~~Y~lg~~~~~l 85 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA------DGSYSLGPEMLRW 85 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCeEEecHHHHHH
Confidence 4566777543369999999999999 5689999999999999999985 3489998865433
No 332
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.69 E-value=0.0061 Score=42.63 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=45.4
Q ss_pred HhCcchhhhhCCC---CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecch
Q 018116 40 ELGIADIIHSHGR---PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTA 104 (360)
Q Consensus 40 ~l~lf~~L~~~~~---~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 104 (360)
+..|++.|... + +.|+.|||+++|+ +...+.+.|..|...|++...+. ..+.|..++
T Consensus 16 ~~~IL~~L~~~-~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~----~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEEL-GEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG----TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHH-CSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS----SSCEEEECC
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC----CCCceEecC
Confidence 56677777663 4 8999999999999 56899999999999999988752 146676654
No 333
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.67 E-value=0.0049 Score=47.02 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=49.4
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
+|.--.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 17 aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~---gr~~~y~l~~~~ 81 (118)
T 2jsc_A 17 ALADPTRCRILVALLD--GVCYPGQLAAHLGL---TRSNVSNHLSCLRGCGLVVATYE---GRQVRYALADSH 81 (118)
T ss_dssp HHSSHHHHHHHHHHHT--TCCSTTTHHHHHSS---CHHHHHHHHHHHTTTTSEEEEEC---SSSEEEEESSHH
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEEChHH
Confidence 3344446677777764 68999999999999 56999999999999999987652 112358888753
No 334
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.67 E-value=0.009 Score=43.62 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=43.0
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 54 ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 54 ~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
.+..+||..+|+ +++.+...++.|...|++++.. +.|.+|+.|..+.
T Consensus 21 ~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~-------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG-------KQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC-------CeeEEChhHHHHH
Confidence 899999999999 5799999999999999999984 6799999998554
No 335
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.63 E-value=0.012 Score=45.61 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=51.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++.+.....++-.-.|.+|+.|..+..
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKK 102 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHH
Confidence 56677777664 78999999999999 5689999999999999999864211111223889999886553
No 336
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.61 E-value=0.0074 Score=42.44 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=47.2
Q ss_pred HHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 38 AVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.....|.+.|.. .+.|+.|||+++|+ +...+++.|..|...|++.... +++-.|+++...
T Consensus 17 ~~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~----~~PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSD----DIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECS----SSSCEEESCC--
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC----CCCCcceeccCc
Confidence 345667778875 34999999999999 5789999999999999999975 335678877654
No 337
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.59 E-value=0.015 Score=53.18 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=44.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCeEEEeCCCCC
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP---QTENLKYIAGDMFQ 249 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~ri~~~~~D~~~ 249 (360)
+...|||||.|.|.++..|+++....+++++++ +..+...+ ..++++++.+|+++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 358999999999999999998754568999988 66554433 35799999999975
No 338
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.58 E-value=0.0081 Score=52.55 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=49.6
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.|++.|...+++.|+.|||+.+|+ +..-+.|+|+.|...|+++++ +++|++++....|.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~-------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGS-------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-------CCEEEEcHHHHHHH
Confidence 4566777643468999999999999 568999999999999999987 38899998765554
No 339
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.53 E-value=0.011 Score=41.79 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=45.0
Q ss_pred HhCcchhhhhCCC---CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 40 ELGIADIIHSHGR---PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 40 ~l~lf~~L~~~~~---~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+..|++.|... + +.|+.|||+++|+ +..-+.+.|..|...|++...+. ..+.|.+.+...
T Consensus 12 ~~~IL~~L~~~-~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~----~~~~W~i~~~~~ 74 (81)
T 1qbj_A 12 EQRILKFLEEL-GEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG----TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHH-CTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS----SSCEEEEC----
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC----CCCeeEEeCcHH
Confidence 55566777653 4 7999999999999 56889999999999999998752 246788776554
No 340
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.44 E-value=0.016 Score=45.46 Aligned_cols=69 Identities=9% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 356677778654 68999999999999 5689999999999999999864211111234899999886653
No 341
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.41 E-value=0.01 Score=45.58 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=50.5
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+|.--.++.|+..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 41 kaL~~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~~---gr~~~y~l~~~~ 106 (122)
T 1r1t_A 41 AVLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRKQ---GRHVYYQLQDHH 106 (122)
T ss_dssp HHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESSHH
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEEChHH
Confidence 34444457788888875 79999999999999 57999999999999999987652 112347776653
No 342
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.40 E-value=0.0075 Score=42.08 Aligned_cols=45 Identities=18% Similarity=0.424 Sum_probs=37.6
Q ss_pred cchhhhhC-----CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSH-----GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~-----~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|++.|... ++|.|+.|||+.+|+ ++..+++-|..|...|++.+..
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 44555443 479999999999999 5678999999999999999985
No 343
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.38 E-value=0.018 Score=46.24 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=52.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 45677788764 79999999999999 5689999999999999999875322111124899999986653
No 344
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.38 E-value=0.012 Score=46.17 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.|..+||+.+++ +...+.+.++.|...|+|.+.. ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee------CceEEEchhHHHHH
Confidence 68999999999999 5689999999999999999985 47899999987554
No 345
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.36 E-value=0.018 Score=51.45 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=34.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP 235 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 235 (360)
.++..|||++||+|.++.++++. +.+++++|+ +.+++.++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 46789999999999999998876 679999999 88887765
No 346
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.35 E-value=0.048 Score=43.60 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=51.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 45577777654 69999999999999 5689999999999999999875322111234889999886553
No 347
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.35 E-value=0.008 Score=42.50 Aligned_cols=49 Identities=14% Similarity=0.383 Sum_probs=41.5
Q ss_pred HHhCcchhhhhCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHG-RPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~-~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.+..|++.|...+ ++.|++||++.+ ++ +..-+.|.|+.|...|++.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 3566888887643 589999999999 88 5789999999999999999865
No 348
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.33 E-value=0.011 Score=51.13 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=51.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..|||+.+|+ +...+.|.|+.|...|++++.+. ...|++|+.+..+..
T Consensus 154 ~~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-----~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 154 EMKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-----DRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-----TTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----ccEEEECHHHHHHHH
Confidence 45566666543 79999999999999 57899999999999999999752 467999999986653
No 349
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.29 E-value=0.008 Score=52.84 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=47.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|+.|...|+++++ +++|++++...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~-------~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATD-------GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEES-------SSEEEECGGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEec-------CCEEEEcHHHH
Confidence 4567777643468999999999999 568999999999999999997 38899988644
No 350
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.24 E-value=0.012 Score=46.29 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|++.....|+-...+.+|+.|..+..
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 356677777764 69999999999999 5699999999999999999874211111245899999886553
No 351
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.20 E-value=0.028 Score=44.55 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=50.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence 56677777653 79999999999999 5799999999999999999864211111234889999886553
No 352
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.19 E-value=0.043 Score=43.74 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=50.4
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 119 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEP 119 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHH
Confidence 4556667654 79999999999999 5699999999999999999875322111224889999886553
No 353
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.17 E-value=0.038 Score=40.06 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=45.7
Q ss_pred chhhhhCCCCCCHHHHHHHcCCCCCCccc-HHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 44 ADIIHSHGRPITLSELVSALKIQPTKTSN-LFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 44 f~~L~~~~~~~t~~ela~~~~~~p~~~~~-l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+..|...+.+.|..|||+.+++ +... +.++++.|...|++..+.. ++-...+.+|+.|..+..
T Consensus 21 L~~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~--drR~~~~~LT~~G~~~~~ 84 (95)
T 2pg4_A 21 LLEFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETL--SYRVKTLKLTEKGRRLAE 84 (95)
T ss_dssp HHHHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEE--ETTEEEEEECHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCC--CCCeEEEEECHhHHHHHH
Confidence 3444443238999999999999 5688 9999999999999994421 111234889999886553
No 354
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.14 E-value=0.014 Score=40.80 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=38.7
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
|.+.|... +.+++.|||+.+++ ++.-++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 56677764 89999999999999 579999999999999999998
No 355
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.12 E-value=0.027 Score=44.06 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=51.5
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|... ++ |..+||+.+++ +...+.+.++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 356788888774 45 99999999999 5799999999999999999875211000114899999886653
No 356
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.08 E-value=0.01 Score=46.54 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=51.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 39 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 39 QWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence 56677777654 79999999999999 5699999999999999999865222121234889999886653
No 357
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.07 E-value=0.017 Score=42.29 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=50.0
Q ss_pred HhCcchhhhhCCCCCCHHHH----HHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSEL----VSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~el----a~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.+..+| |+.+++ +...+.++++.|...|++++.... ....|.+|+.|..+..
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~---r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER---GEKRLYLTEKGKLFAI 78 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC---CceEEEECHHHHHHHH
Confidence 34456666553 78999999 999999 579999999999999999986420 1345899999886653
No 358
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.06 E-value=0.051 Score=42.93 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=51.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec--cccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK--TKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~--~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++ .....++-.-.+.+|+.|..+..
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 56677777764 78999999999999 56899999999999999998 43211111124899999886553
No 359
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.06 E-value=0.053 Score=43.74 Aligned_cols=68 Identities=22% Similarity=0.270 Sum_probs=52.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|.+.....++-.-.+.+|+.|..+..
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 56677778663 69999999999999 5799999999999999999864221111223889999885553
No 360
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.05 E-value=0.023 Score=43.92 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
++.|..|||+.+++ +...+.++|+.|...|+++... |..+.|.++...
T Consensus 25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~----g~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIR----GAYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCG
T ss_pred CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecC----CCCCceEeCCCH
Confidence 68999999999999 5699999999999999998764 113678886643
No 361
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.00 E-value=0.11 Score=50.45 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=66.1
Q ss_pred cCCCCEEEEeCCCCchHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC
Q 018116 193 FEGLGSIVDVGGGNGGFSKIISEAF-------------PGIKCTVLDL-PHAVANMPQ------TENLKYIAGDMFQ-YI 251 (360)
Q Consensus 193 ~~~~~~iLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~ri~~~~~D~~~-~~ 251 (360)
...+.+|+|-.||+|.++....+.. ....+.|+|+ +.+...++. .+.-++..+|... +.
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~ 294 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPL 294 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCG
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCch
Confidence 3456799999999999998766532 1356899999 777665542 3445677888765 21
Q ss_pred ------CCccEEEecccccc---------CC-----hhHHHHHHHHHHHhccCC----CCCcEEEEEee
Q 018116 252 ------PPADAYFFKLVFHA---------FG-----DEDCLKILKKCREAIAGN----GERGKVLIMDI 296 (360)
Q Consensus 252 ------p~~D~i~~~~~lh~---------~~-----~~~~~~~L~~~~~~L~p~----~~gG~lli~e~ 296 (360)
..||+|+++=-+-. ++ .+.....+..+.+.|++. ++||++.++-+
T Consensus 295 ~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 295 REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 25999998544321 11 111234677777777620 12898887653
No 362
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=94.99 E-value=0.013 Score=41.79 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=39.1
Q ss_pred cchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 43 IADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 43 lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
|.+.|... +.+++.|||+.+++ ++.-++|.|+.|...|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 56677764 89999999999999 5799999999999999999984
No 363
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.99 E-value=0.0097 Score=46.28 Aligned_cols=68 Identities=9% Similarity=0.086 Sum_probs=51.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-...|.+|+.|..+..
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELE 107 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHH
Confidence 56778888653 69999999999999 5799999999999999999864211111124889999886553
No 364
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.92 E-value=0.028 Score=44.03 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=51.6
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|....++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 356777777651279999999999999 5799999999999999999864211111223889998886553
No 365
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.89 E-value=0.028 Score=43.93 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=51.4
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|. . ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 39 ~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 105 (146)
T 2gxg_A 39 DFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN 105 (146)
T ss_dssp HHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHH
Confidence 566777777 3 79999999999999 5689999999999999999864211111224889998885553
No 366
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.86 E-value=0.084 Score=41.50 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=51.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 46677777764 69999999999999 578999999999999999986521111122588999887554
No 367
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.84 E-value=0.047 Score=42.99 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.++.++..|...++++|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 356677777654457899999999999 5799999999999999999865211111123889998886553
No 368
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.84 E-value=0.02 Score=40.31 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=38.1
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
..|++.|... ++.|..|||+.+|+ +...+.+.|+.|...|++.+.
T Consensus 3 ~~Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 3466677653 78999999999999 568999999999999999854
No 369
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.82 E-value=0.024 Score=44.09 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=51.0
Q ss_pred HhCcchhhhhCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGR-PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~-~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...++ +.|..+||+.+++ +...+.+.++.|...|++++.....++-...+.+|+.|..+..
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~ 105 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 105 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHH
Confidence 4556777766422 8999999999999 5689999999999999999865211111224888998875543
No 370
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=94.82 E-value=0.1 Score=41.08 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=48.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc--cCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK--VGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~--~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..| . .++.|..+||+.+++ +...+.++++.|...|++.+.. ...|+-.-.+.+|+.|..+..
T Consensus 40 q~~iL~~l-~-~~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~ 108 (151)
T 3kp7_A 40 QSHVLNML-S-IEALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIK 108 (151)
T ss_dssp HHHHHHHH-H-HSCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHH
T ss_pred HHHHHHHH-H-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHH
Confidence 45577888 4 389999999999999 5689999999999999999731 111111224789998886653
No 371
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.81 E-value=0.019 Score=44.93 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=51.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++.+.....++-.-.+.+|+.|..+..
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 98 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHH
Confidence 45567777664 68999999999999 5799999999999999999865321111223889999886553
No 372
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.79 E-value=0.015 Score=45.50 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=50.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 45667777653 79999999999999 5699999999999999999875322111234899999886653
No 373
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=94.78 E-value=0.065 Score=42.61 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=50.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 117 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence 56678888322479999999999999 5689999999999999999864211111123889999886553
No 374
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.78 E-value=0.022 Score=44.28 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=51.8
Q ss_pred HhCcchhhhhCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHG-RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~-~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+ ++.|..+||+.+++ +...+.++++.|...|++++.....|+-.-.+.+|+.|..+..
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 566777776642 49999999999999 5689999999999999999875222111234889999886653
No 375
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.77 E-value=0.024 Score=43.90 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=51.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 45566677653 68999999999999 5799999999999999999864211111223889999886553
No 376
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.75 E-value=0.024 Score=44.36 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=50.8
Q ss_pred HhCcchhh-hhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADII-HSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L-~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..| .. .++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 45567777 43 379999999999999 568999999999999999987521111122488898887554
No 377
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.75 E-value=0.015 Score=46.97 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=50.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 56677777653368999999999999 5799999999999999999875211111134889998886653
No 378
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.65 E-value=0.024 Score=44.69 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=51.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-...+.+|+.|..+..
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 111 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIE 111 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHH
Confidence 45667777653 69999999999999 5799999999999999999864211111234889998886553
No 379
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.60 E-value=0.03 Score=44.47 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=51.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.|.+|+.+..+..
T Consensus 46 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 46 ELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 56677777653 68999999999999 5789999999999999999864211121234889998886553
No 380
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.56 E-value=0.027 Score=45.02 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=49.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|+|++.....++-...|.+|+.|..+..
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 118 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYE 118 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHH
Confidence 56677788763 79999999999999 5689999999999999999864211111234889998886553
No 381
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.55 E-value=0.032 Score=43.51 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=52.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.+..+..
T Consensus 39 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 39 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 56677777764 68999999999999 5688999999999999999875211111225888998885553
No 382
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.52 E-value=0.049 Score=42.89 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=50.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 43 q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 110 (149)
T 4hbl_A 43 QYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQE 110 (149)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHH
Confidence 56777778664 79999999999999 5699999999999999999875211111224889999886553
No 383
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.51 E-value=0.094 Score=41.35 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=51.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++.+.....++-.-.+.+|+.+..+..
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 45567777653 68999999999999 5799999999999999999875211111124889998875543
No 384
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.45 E-value=0.022 Score=44.07 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=50.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.+..+..
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 45567777664 79999999999999 5789999999999999999864211010123888998875553
No 385
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.45 E-value=0.031 Score=43.75 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=47.6
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
.++.++..|... + .|..|||+.+++ +...+.++++.|...|+|++.....|+-.-.|.+|+.+..+.
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 356677777763 4 999999999999 568999999999999999986521112123488888887554
No 386
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.41 E-value=0.035 Score=43.22 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+++.|..+||+.+++ +...+.+.++.|...|++.+.. ..|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~-------~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE-------DGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC-------CeEEEChhHHHHH
Confidence 378999999999999 5689999999999999999873 6799999887554
No 387
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.29 E-value=0.03 Score=44.77 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=51.6
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.|.+|+.+..+.
T Consensus 54 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 54 KMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 56678888764 79999999999999 578999999999999999986421111123488999887554
No 388
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.28 E-value=0.053 Score=43.07 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=50.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+++.+..+||+.+++ +...+.++++.|...|+|++....+|+-.-.+.+|+.|..+..
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 34455666544457888999999999 5799999999999999999875322111124889999886653
No 389
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.25 E-value=0.031 Score=44.23 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=50.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 56677777664 79999999999999 5799999999999999999864211111124889999886654
No 390
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.22 E-value=0.029 Score=44.16 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=44.4
Q ss_pred HhCcchhhhhCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHG-RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~-~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+ ++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 112 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVE 112 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHH
Confidence 455667776532 69999999999999 5689999999999999999875211111124788998886553
No 391
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.19 E-value=0.024 Score=44.36 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=51.4
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.|.+|+.+..+..
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 56677777653 79999999999999 5689999999999999999864211110124889999886553
No 392
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.18 E-value=0.043 Score=42.94 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=52.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.|..+..
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 56667777653 68999999999999 5799999999999999999865322121234889999886654
No 393
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.15 E-value=0.026 Score=41.65 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=40.5
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.++.|+..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+..
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 355666777543 78999999999999 5799999999999999999865
No 394
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.09 E-value=0.048 Score=43.28 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=50.5
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcC
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKD 112 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~ 112 (360)
.+|++...+... . +++.|.++||+.+++ ++..+.++|..|...|+++... | .|.|.++.....+
T Consensus 15 yAl~~L~~La~~---~--~~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~r----G-~GGy~L~~~p~~I--- 78 (149)
T 1ylf_A 15 IAVHILSILKNN---P--SSLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR----G-PGGAGLLKDLHEI--- 78 (149)
T ss_dssp HHHHHHHHHHHS---C--GGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCGGGC---
T ss_pred HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEcc----C-CCceEeCCChhhC---
Confidence 455555555432 2 268999999999999 5699999999999999998765 2 5778887654332
Q ss_pred CCCChhhhhhh
Q 018116 113 KSYCLSPLVSG 123 (360)
Q Consensus 113 ~~~~~~~~~~~ 123 (360)
++.+++..
T Consensus 79 ---tl~dVi~a 86 (149)
T 1ylf_A 79 ---TLLDVYHA 86 (149)
T ss_dssp ---BHHHHHHH
T ss_pred ---cHHHHHHH
Confidence 45555544
No 395
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.09 E-value=0.091 Score=42.32 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=46.6
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISA 107 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 107 (360)
.+|++...+... . +.+.|.++||+.+++ ++..+.++|..|...|+++-.. |..|.|++.....
T Consensus 13 yAlr~l~~La~~---~--~~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~r----G~~GGy~Lar~p~ 75 (162)
T 3k69_A 13 VAVHSILYLDAH---R--DSKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTV----GKNGGYQLDLALA 75 (162)
T ss_dssp HHHHHHHHHHTT---T--TSCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEEC----STTCEEECCSCGG
T ss_pred HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec----CCCCCeEecCChh
Confidence 455555444332 1 368999999999999 4699999999999999997764 2246799876543
No 396
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=94.03 E-value=0.049 Score=43.78 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
++.|.++||+.+++ ++..++++|..|...|+|.... |.+|.|.++..
T Consensus 43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~r----G~~GGy~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIR----GAHGGYVLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----STTCEEEECSC
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEec----CCCCceEecCC
Confidence 68999999999999 5699999999999999998765 22467888654
No 397
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.98 E-value=0.03 Score=44.57 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=46.0
Q ss_pred hhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 46 IIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 46 ~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
.|.. +++.|..+||+.+++ +...+.+.++.|...|+|++.. +..+.+|+.+..+.
T Consensus 48 ~l~~-~~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIRE-VGEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP------WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHH-HSCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET------TTEEEECHHHHHHH
T ss_pred HHHh-CCCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec------CCceEEChhHHHHH
Confidence 4443 268999999999999 5789999999999999999875 46799999887554
No 398
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=93.90 E-value=0.03 Score=42.40 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=44.6
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
.+|..-.++.|+..|.. ++.|+.+||+.+++ +...+.+.|+.|...|++....
T Consensus 27 ~~l~~~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 27 QALATPSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHCCHHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHhCCHHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34444557888888876 68999999999999 5799999999999999998765
No 399
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=93.89 E-value=0.047 Score=39.57 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=41.1
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.|..+||+.+++ +...+.++++.|...|++....+ +-...|++|+.|..+..
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~d---~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECELE---GRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCCC---CCeEEEEEChhHHHHHH
Confidence 3899999999999 56999999999999999943321 00124999999886553
No 400
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.85 E-value=0.03 Score=43.01 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=51.1
Q ss_pred HhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... +++.|..+||+.+++ +...+.++++.|...|++.+.....|+-.-.+.+|+.|..+..
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 45566666552 168999999999999 5689999999999999999864222121234889999886553
No 401
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.82 E-value=0.023 Score=44.18 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=51.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....++-.-.+.+|+.+..+..
T Consensus 38 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 38 QWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 56677777653 68999999999999 5689999999999999998864211110123889998886553
No 402
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.79 E-value=0.098 Score=43.13 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=53.5
Q ss_pred HHHhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 38 AVELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 38 a~~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
..++.++..|... +++.|..+||+.+++ +...+.++++.|...|+|++.....++-.-.+.+|+.|..+..
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 3456777777642 268999999999999 5689999999999999999865322121234899999986554
No 403
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=93.77 E-value=0.083 Score=38.38 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++.+..+||+.+++ +...+.|.|..|...|+++.... +++ .+..++|+.|..+.
T Consensus 35 ~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~-~D~-R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE-ADG-RGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-TTS-CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC-CCC-ceeEEECHHHHHHH
Confidence 68899999999999 67999999999999999998553 333 34578999887544
No 404
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.75 E-value=0.061 Score=42.43 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhcCCCCChhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLVSG 123 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~ 123 (360)
++ |.++||+..++ ++..+.++|..|...|+|.... | .|.|+++.....+ ++.+++..
T Consensus 23 ~~-s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~r----G-~GGy~Lar~p~~I------tl~dVi~a 79 (145)
T 1xd7_A 23 KT-SSEIIADSVNT---NPVVVRRMISLLKKADILTSRA----G-VPGASLKKDPADI------SLLEVYRA 79 (145)
T ss_dssp CC-CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS----S-SSSCEESSCGGGC------BHHHHHHH
T ss_pred CC-CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeec----C-CCCceecCCHHHC------CHHHHHHH
Confidence 35 99999999999 4699999999999999998875 3 5778887654433 45555544
No 405
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.74 E-value=0.025 Score=41.52 Aligned_cols=66 Identities=12% Similarity=0.274 Sum_probs=47.7
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
.+|.--.++.|+..|... ++.++.|||+.+|+ ++..+.+.|+.|... ++..... |....|++++..
T Consensus 22 ~aL~~~~Rl~IL~~l~~~-~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~~---gr~~~y~l~~~~ 87 (99)
T 2zkz_A 22 KTMAHPMRLKIVNELYKH-KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNRQ---GLEIYYSINNPK 87 (99)
T ss_dssp HHHCSHHHHHHHHHHHHH-SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEEE---TTEEEEECCCHH
T ss_pred HHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheEe---CcEEEEEEChHH
Confidence 344444566777444332 79999999999999 579999999999999 9986652 113358887754
No 406
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.71 E-value=0.06 Score=45.55 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+++.+..+||+.+++ +...+.+.++.|...|++++.. ...+.+|+.|..+..
T Consensus 18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK------KAGYLLTDLGLKLVS 69 (214)
T ss_dssp CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHHH
T ss_pred CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec------CCCeEECHHHHHHHH
Confidence 379999999999999 5689999999999999999986 478999999986653
No 407
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=93.67 E-value=0.061 Score=38.92 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=49.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHH-HcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVS-ALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~-~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.|+-.|... ++.|..+||+ ..++ +...+.|-++.|...|+++..+ ++ +.+|+.++.+..
T Consensus 18 QfsiL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~------~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG------DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET------TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC------CC-eeeCHhHHHHHH
Confidence 34556667664 6999999999 9999 6789999999999999999433 34 999999986654
No 408
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.65 E-value=0.032 Score=42.77 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=40.4
Q ss_pred HhCcchhhhhCCCC-CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRP-ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~-~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|...+++ .|+.|||+.+++ +...+.|.|+.|...|++.+..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 56677777654456 899999999999 5799999999999999998864
No 409
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.57 E-value=0.032 Score=45.69 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=49.9
Q ss_pred HhCcchhhhhCCCC--CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRP--ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~--~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+++ .|..+||+.+++ +...+.++++.|...|+|++.....++-.-.+.+|+.|..+..
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 141 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 141 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 56677778654332 999999999999 5689999999999999999864211111124889998886553
No 410
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=93.53 E-value=0.053 Score=42.71 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAIS 106 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 106 (360)
++.|.++||+.+++ ++..+.++|..|...|+|.... |.+|.|+++...
T Consensus 27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~r----G~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVR----GAKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECS----SSSSEEEESSCG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecC----CCCCCeeecCCc
Confidence 58999999999999 5699999999999999998654 224679886543
No 411
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=93.17 E-value=0.11 Score=41.83 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=49.1
Q ss_pred HhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... +++.|..+||+.+++ +...+.++++.|...|+|++.....|+-.-.+.+|+.|..+..
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHH
Confidence 56677777653 259999999999999 5689999999999999999875211010114889998886553
No 412
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=92.88 E-value=0.058 Score=36.90 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=46.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
+-.|++.|..++.|++..+||+.+|+ +.--+...|..|-..|.+.... .-.|.++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk------RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC------CceeeCC
Confidence 45677788777789999999999999 6788999999999999998886 4567765
No 413
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=92.63 E-value=0.56 Score=42.61 Aligned_cols=125 Identities=11% Similarity=0.099 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC----CC--CccEEEeccccccC
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGI-KCTVLDL-PHAVANMPQ-TENLKYIAGDMFQY----IP--PADAYFFKLVFHAF 266 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~----~p--~~D~i~~~~~lh~~ 266 (360)
..+++|+-||.|.++..+.++.-.. .+.++|. +.+++..+. .+...++.+|+.+- ++ .+|+++..--...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3589999999999999999883222 4788898 777765543 34456788888662 23 58999986654444
Q ss_pred Chh--------HHHHHHHHHHHhccCCCCC--cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHH
Q 018116 267 GDE--------DCLKILKKCREAIAGNGER--GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 267 ~~~--------~~~~~L~~~~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
+.. ..-.++.++.++++.. . -+++++|.+..-. .+ .+.+.+.+.|
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l~---------------------~~--~~~~~i~~~l 136 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGFE---------------------VS--STRDLLIQTI 136 (343)
T ss_dssp --------------CHHHHHHHHGGGC--SSCCSEEEEEEETTGG---------------------GS--HHHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCcccc---------------------CH--HHHHHHHHHH
Confidence 321 1112344333333321 1 2567777664210 01 1456788888
Q ss_pred HHCCCceeE
Q 018116 337 LDAGFTHYK 345 (360)
Q Consensus 337 ~~aGf~~~~ 345 (360)
++.||.+..
T Consensus 137 ~~~GY~v~~ 145 (343)
T 1g55_A 137 ENCGFQYQE 145 (343)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCeeEE
Confidence 899987543
No 414
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=92.48 E-value=0.026 Score=48.36 Aligned_cols=67 Identities=12% Similarity=0.241 Sum_probs=51.9
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceec-cccCCCCc-----ccceecchhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSK-TKVGGEKE-----EEAYGLTAIS 106 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~-~~~~~~~~-----~~~y~~t~~~ 106 (360)
.+|.--.++.|+..|.. +|.|+.|||+.+|+ +...+.+.|+.|...|++.. ... |. ...|++++.+
T Consensus 7 kaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~~~~~---gr~~GRp~~~Y~Lt~~~ 78 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQSYEKE---ERFIGPTKKYYKISIAK 78 (232)
T ss_dssp HHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEEEEEC---C-----CEEEEEECCCE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeeec---CCCCCCccEEEEEccch
Confidence 45555567778888875 79999999999999 56899999999999999998 331 11 1248888866
Q ss_pred h
Q 018116 107 A 107 (360)
Q Consensus 107 ~ 107 (360)
.
T Consensus 79 ~ 79 (232)
T 2qlz_A 79 S 79 (232)
T ss_dssp E
T ss_pred h
Confidence 5
No 415
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.41 E-value=0.083 Score=44.25 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=51.7
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccC-CC-Ccccceecchhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GE-KEEEAYGLTAISA 107 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~~~y~~t~~~~ 107 (360)
.+|..-.++.|+..|.. +|.++.+||+.+|+ +...+.+.|+.|...|+|...... .. +..-.|++|+.+.
T Consensus 10 kaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 45555556777777765 79999999999999 578999999999999999886421 00 1123488877654
No 416
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=92.38 E-value=0.12 Score=40.72 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=39.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDLPHAVANMPQTENLKYIAGDMFQ 249 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ri~~~~~D~~~ 249 (360)
..-|+|+|-|+|..=-++.+.+|+.++.++|..-.....-..+.=.++.||+.+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHH
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHH
Confidence 467999999999999999999999999999972111111113444577788766
No 417
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=92.36 E-value=0.16 Score=32.34 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=41.0
Q ss_pred hhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 46 IIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 46 ~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.|+....+.|+.|+|+..++ +....+.-|+.|.+.|-+.+.+ .+|++.|-
T Consensus 11 ll~s~~QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs-------SRYrlkph 60 (68)
T 3i71_A 11 LLTSVRQGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS-------SRYRLKPH 60 (68)
T ss_dssp HHHHCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECC-
T ss_pred HHHHHhccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc-------cccccCcc
Confidence 34333369999999999999 5788889999999999999985 89988663
No 418
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=91.69 E-value=0.058 Score=44.39 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=51.9
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeccccC--CCCcccceecchhhhhh
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALK-IQPTKTSNLFRFMRLLVHMGLFSKTKVG--GEKEEEAYGLTAISALL 109 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~~~y~~t~~~~~l 109 (360)
.+|.-=.++.|+..|.. ++.++.+||+.++ + +...+.+.|+.|...|+|+...+. ..+....|++++.+..+
T Consensus 18 ~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~ 92 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA 92 (182)
T ss_dssp HHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence 44455567888888875 7999999999996 7 467899999999999999765421 00012348887765443
No 419
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.69 E-value=0.079 Score=44.52 Aligned_cols=68 Identities=21% Similarity=0.133 Sum_probs=50.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|.+.....|+-.-.+.+|+.|..+..
T Consensus 50 q~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 50 EHHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 45567777653 69999999999999 5799999999999999999875211111125899999986553
No 420
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=91.54 E-value=0.2 Score=39.54 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=49.8
Q ss_pred HHhCcchhhhhCC-CCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeccccCCC-Cccc----ceecchhhhhhh
Q 018116 39 VELGIADIIHSHG-RPITLSELVSALK-IQPTKTSNLFRFMRLLVHMGLFSKTKVGGE-KEEE----AYGLTAISALLI 110 (360)
Q Consensus 39 ~~l~lf~~L~~~~-~~~t~~ela~~~~-~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~-~~~~----~y~~t~~~~~l~ 110 (360)
.++.|++.|..+. +..|++||++.++ + +...+.+.|+.|+..|+|++...... ...+ .|++|+.+..+.
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 4566666665422 4589999999998 8 67899999999999999986532100 0012 699999998544
No 421
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=91.39 E-value=1.1 Score=41.21 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=63.2
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCCC----C-------CCccEEEeccc
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-TENLKYIAGDMFQY----I-------PPADAYFFKLV 262 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~~----~-------p~~D~i~~~~~ 262 (360)
-+++|+=||.|.++..+.++ +.+ +.++|. +.+++..+. .+...++.+|+.+- + +.+|+++..--
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 47999999999999999988 565 458898 777665443 34677888888651 1 36999998665
Q ss_pred cccCCh-------hHHHHHHHH---HHHhccCCCCCcEEEEEeeecC
Q 018116 263 FHAFGD-------EDCLKILKK---CREAIAGNGERGKVLIMDIVIN 299 (360)
Q Consensus 263 lh~~~~-------~~~~~~L~~---~~~~L~p~~~gG~lli~e~~~~ 299 (360)
...++. +..-.++.. +.+.++| +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchH
Confidence 444431 112233333 3344566 5788887654
No 422
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=91.22 E-value=0.11 Score=40.88 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=48.5
Q ss_pred hCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 41 LGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 41 l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.++..|... +++.|..+||+.+++ +...+.++++.|...|+|++....+|+-.-...+|+.|..+..
T Consensus 38 ~~vL~~L~~~~~~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 106 (147)
T 4b8x_A 38 YEALVLLTFSKSGELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE 106 (147)
T ss_dssp HHHHHHHHTSGGGEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH
Confidence 3445555321 268999999999999 5799999999999999999875322111123889999986653
No 423
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.05 E-value=0.067 Score=40.58 Aligned_cols=61 Identities=13% Similarity=0.271 Sum_probs=45.8
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeccccCCCCcccc---eecchhhhhhh
Q 018116 41 LGIADIIHSHGRPITLSELVSALK----IQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEA---YGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~----~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~---y~~t~~~~~l~ 110 (360)
+.++..|... ++.|..+||+.++ + +...+.++|+.|...|++.+... +.+ +.+|+.+..+.
T Consensus 13 ~~vL~~l~~~-~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~-----~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 13 WEVMNIIWMK-KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKD-----NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEE-----TTEEEEEESSCHHHHHH
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEec-----CCeEEEEEecCHHHHHH
Confidence 3444555442 7999999999999 5 46889999999999999998762 122 46888877655
No 424
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=91.02 E-value=0.14 Score=39.46 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-.+..|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEE
Confidence 445677788887655799999999998 66 5688999999999999999875
No 425
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=90.88 E-value=0.087 Score=39.21 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=38.7
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
++.|+..+...+.+.|..+||+.+|+ +..-+++.|+.|...|+++..
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 45566666432348999999999999 568899999999999999876
No 426
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=90.75 E-value=0.33 Score=42.22 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=33.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMP 235 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 235 (360)
.++..|||..||+|.++.+..+. +.+++++|+ +..++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 56789999999999999988776 679999999 77776553
No 427
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=90.56 E-value=0.16 Score=40.00 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=40.7
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|+..|.. +++.|..|||+.+|+ ++..+.+.++.|...|++.+.
T Consensus 4 ~~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQY-NAKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTT-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence 35667888876 378999999999999 579999999999999999875
No 428
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=90.55 E-value=0.21 Score=41.37 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=44.0
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.++....+..|+..|.. ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 33444567778888874 79999999999999 568999999999999999887
No 429
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=90.52 E-value=0.26 Score=38.70 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=46.6
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.... ++..+|.+.
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~--~~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELTYG--DASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEECCT--TSCCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEeeC--CCceEEECC
Confidence 344567888887655799999999998 55 568899999999999999987531 113457653
No 430
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=90.46 E-value=1.9 Score=38.71 Aligned_cols=120 Identities=21% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCC----CCCCccEEEeccccccCC-
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-TENLKYIAGDMFQ----YIPPADAYFFKLVFHAFG- 267 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~----~~p~~D~i~~~~~lh~~~- 267 (360)
..+++|+-||.|.++..+.++ +.+ +..+|. +.+++..+. .+... .+|+.+ ..+.+|+++..--...++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 468999999999999999886 455 566888 766654432 11111 577765 245799998865444443
Q ss_pred --------hhH---HHHHHHHHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHH
Q 018116 268 --------DED---CLKILKKCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLF 336 (360)
Q Consensus 268 --------~~~---~~~~L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll 336 (360)
|+. ...+++ +.+.++| +++++|.+..-... .+..+.+.+.+.|
T Consensus 87 ag~~~g~~d~r~~L~~~~~r-~i~~~~P-----~~~~~ENV~gl~~~--------------------~~~~~~~~i~~~l 140 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIAR-IVREKKP-----KVVFMENVKNFASH--------------------DNGNTLEVVKNTM 140 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHH-HHHHHCC-----SEEEEEEEGGGGTG--------------------GGGHHHHHHHHHH
T ss_pred hcccCCCcchhhHHHHHHHH-HHHhccC-----cEEEEeCcHHHHhc--------------------cccHHHHHHHHHH
Confidence 111 122333 3344566 57788876432110 1122567788888
Q ss_pred HHCCCceeE
Q 018116 337 LDAGFTHYK 345 (360)
Q Consensus 337 ~~aGf~~~~ 345 (360)
++.||.+..
T Consensus 141 ~~~GY~v~~ 149 (327)
T 2c7p_A 141 NELDYSFHA 149 (327)
T ss_dssp HHTTBCCEE
T ss_pred HhCCCEEEE
Confidence 999987543
No 431
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=90.37 E-value=0.19 Score=39.42 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=40.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|++.|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 7 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 7 DLNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEe
Confidence 45677788763 79999999999999 5799999999999999998753
No 432
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=90.28 E-value=0.63 Score=35.00 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=51.5
Q ss_pred HHHHHHhCcchhhhhCCCCCCHHHHHHHcC--------CCCCCc-ccHHHHHHHHHhCCceeccccCCCC-cccceecch
Q 018116 35 LKGAVELGIADIIHSHGRPITLSELVSALK--------IQPTKT-SNLFRFMRLLVHMGLFSKTKVGGEK-EEEAYGLTA 104 (360)
Q Consensus 35 L~~a~~l~lf~~L~~~~~~~t~~ela~~~~--------~~p~~~-~~l~~lL~~L~~~g~l~~~~~~~~~-~~~~y~~t~ 104 (360)
++...++-|+..|.. +|.+.-||++.+. + ++ ..+.+.|+.|...|+|+......++ ..-.|++|+
T Consensus 10 ~~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 10 RGWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred ccchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 344456666777765 7999999999883 4 67 8999999999999999876421011 123499999
Q ss_pred hhhhhh
Q 018116 105 ISALLI 110 (360)
Q Consensus 105 ~~~~l~ 110 (360)
.|..+.
T Consensus 85 ~G~~~l 90 (118)
T 2esh_A 85 QGKLYL 90 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998554
No 433
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=90.25 E-value=0.19 Score=39.66 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=40.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 9 ~~~iL~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 9 DRILVRELAAD-GRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence 45677777663 79999999999999 5789999999999999997653
No 434
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=89.91 E-value=0.12 Score=36.18 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=38.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQP-TKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p-~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|.. .++.|+.||++.++..+ -+..-+.++|+.|...|++.+..
T Consensus 11 e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 11 ELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 4556666654 37999999999997310 04588999999999999999876
No 435
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=89.90 E-value=0.16 Score=32.43 Aligned_cols=47 Identities=15% Similarity=0.324 Sum_probs=41.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
+-.|++.|..++|-+.+..+|+.+|+ +..-+..+|+-|.+.|++.-+
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 45678888888899999999999999 568899999999999998754
No 436
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=89.84 E-value=0.52 Score=35.53 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=51.2
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHc------CCCCCCcccHHHHHHHHHhCCceeccccC-CCC-cccceecchh
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSAL------KIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GEK-EEEAYGLTAI 105 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~------~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t~~ 105 (360)
.++-.+++=|+..|.. +|.+--||++.+ ++ ++..+...|+.|...|+|+..... +++ ..-.|++|+.
T Consensus 7 l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~ 81 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEA 81 (117)
T ss_dssp HHHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHH
T ss_pred HHHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHH
Confidence 4444555556666765 799999999887 56 578999999999999999876421 111 1234999999
Q ss_pred hhhhh
Q 018116 106 SALLI 110 (360)
Q Consensus 106 ~~~l~ 110 (360)
|+...
T Consensus 82 G~~~l 86 (117)
T 4esf_A 82 GRQEL 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98444
No 437
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=89.70 E-value=0.23 Score=42.98 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=51.9
Q ss_pred HhCcchhhhhCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGR-PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~-~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...++ +.|..|||+.+++ +...+.++++-|...|+|.+....+|+-.-...+|+.|..+..
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~ 229 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAE 229 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHH
Confidence 4567777765432 5999999999999 5799999999999999999976322111123888999886653
No 438
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=89.60 E-value=0.25 Score=38.87 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=41.4
Q ss_pred hCcchhhhhC----CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 41 LGIADIIHSH----GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 41 l~lf~~L~~~----~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
+.++..|... ++++|..|||+.+++ +...+.++++.|...|+|....+ +|+=.-...+|+.|..+.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~~-~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMAG-ADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC-CCCCeeEEEECHHHHHHH
Confidence 4445555432 146899999999999 57999999999999999955432 111112388888888554
No 439
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=89.54 E-value=0.23 Score=39.75 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=40.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 12 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 12 DIKILQVLQEN-GRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeeec
Confidence 45677777663 78999999999999 5789999999999999998753
No 440
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=89.24 E-value=0.22 Score=39.41 Aligned_cols=47 Identities=11% Similarity=0.286 Sum_probs=40.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+++|+ ++..+.+.++.|...|++....
T Consensus 10 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 10 DRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceEE
Confidence 45677777763 79999999999999 5789999999999999998753
No 441
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.16 E-value=0.15 Score=37.30 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.|..|||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 78999999999999 5689999999999999999875
No 442
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=89.10 E-value=0.11 Score=38.07 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=39.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQP-TKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p-~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.|+..|-.. ++.|+.||++.++..+ -+..-+.++|+.|...|+|++..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 45667777653 7999999999998521 13578999999999999999986
No 443
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=88.91 E-value=0.26 Score=39.47 Aligned_cols=47 Identities=13% Similarity=0.334 Sum_probs=41.2
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|++.|.. +++.|..+||+++|+ ++..+.+-++.|...|++...
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence 35678888876 489999999999999 578999999999999999865
No 444
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=88.87 E-value=0.22 Score=39.37 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=40.1
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++....
T Consensus 9 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 9 DKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 45677777763 79999999999999 5789999999999999998753
No 445
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=88.59 E-value=0.21 Score=38.91 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=38.0
Q ss_pred hCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..++..|....++.|..|||+.+|+ +...+.++++.|...|++++..
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3445555322379999999999999 5689999999999999999863
No 446
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=88.55 E-value=0.27 Score=38.79 Aligned_cols=47 Identities=19% Similarity=0.363 Sum_probs=40.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 11 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 11 DMQLVKILSEN-SRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence 45677778763 79999999999999 5789999999999999998753
No 447
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=88.50 E-value=0.25 Score=38.34 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=39.4
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|...|.. +++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 6 ~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeccc
Confidence 4456677765 378999999999999 5789999999999999998763
No 448
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=88.47 E-value=0.45 Score=39.07 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=45.7
Q ss_pred HHHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc-eeccccCCCCcccceecchh
Q 018116 38 AVELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGL-FSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 38 a~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~~y~~t~~ 105 (360)
-....|.+.|...+++.|..|||+.+|+ +.+-+.+-++.|...|+ +... .++|.+.+.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~-------~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-------TTEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE-------CCEEEECCc
Confidence 3456678888753357999999999999 67999999999999999 7664 356777653
No 449
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=88.46 E-value=0.28 Score=41.74 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.|..++|+++++ ++..+.+.++.|...|+|.+... +-...+.+|+.|..+..
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~---~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVT---KRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEc---CCeEEEEECHHHHHHHH
Confidence 57899999999999 67999999999999999999831 00267999999986654
No 450
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=88.35 E-value=0.31 Score=39.48 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=40.2
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|+..|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 345677888763 78999999999999 578999999999999999865
No 451
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=88.28 E-value=0.29 Score=39.66 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=40.7
Q ss_pred HHhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 39 VELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 39 ~~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
.+..|+..|... ++.|..|||+++|+ ++..+.+.++.|...|++...
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEee
Confidence 456777888763 79999999999999 578999999999999999875
No 452
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=88.16 E-value=0.47 Score=34.59 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=39.8
Q ss_pred HHHHHHhCcch-hhhhCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 35 LKGAVELGIAD-IIHSHGRPI-TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 35 L~~a~~l~lf~-~L~~~~~~~-t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.-.++..|.+ .+.. +..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 16 l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 16 VATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 34444555665 3443 3455 99999999999 5688999999999999998875
No 453
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=88.06 E-value=0.71 Score=39.98 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=62.1
Q ss_pred CCEEEEeCCCCchHHHHHHHH-------CCCCeEEEeec-hHHHh----------------------------------c
Q 018116 196 LGSIVDVGGGNGGFSKIISEA-------FPGIKCTVLDL-PHAVA----------------------------------N 233 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~----------------------------------~ 233 (360)
...|+|+|+-.|..+..+++. .++-++.++|. ..+-+ .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 569999999999988876652 35678999983 11110 0
Q ss_pred CC---C-CCCeEEEeCCCCCC-------CC--CccEEEeccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 234 MP---Q-TENLKYIAGDMFQY-------IP--PADAYFFKLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 234 a~---~-~~ri~~~~~D~~~~-------~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
.+ . .++|+++.|++.+. .| .+|++++=.-. + +.....+..+...|+| |.++++|-.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y--~~t~~~le~~~p~l~~----GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--Y--EPTKAVLEAIRPYLTK----GSIVAFDEL 218 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--H--HHHHHHHHHHGGGEEE----EEEEEESST
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--c--chHHHHHHHHHHHhCC----CcEEEEcCC
Confidence 01 1 37899999998762 23 38888764321 1 2245679999999999 555555543
No 454
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=88.04 E-value=1.5 Score=39.17 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=52.7
Q ss_pred CCEEEEeCCCC--chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCCccEEEeccccccCChhHH
Q 018116 196 LGSIVDVGGGN--GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGDEDC 271 (360)
Q Consensus 196 ~~~iLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~~~~lh~~~~~~~ 271 (360)
..+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ ...++|+|++. .+....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 36899999874 234444555422238999999 7666655432222222334433 34579999875 355567
Q ss_pred HHHHHHHHHhccC
Q 018116 272 LKILKKCREAIAG 284 (360)
Q Consensus 272 ~~~L~~~~~~L~p 284 (360)
..+++++...++|
T Consensus 108 ~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 108 REIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHhhccCC
Confidence 7889999999998
No 455
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=88.03 E-value=1 Score=39.55 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC-----CC--CccEEEecccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAFPGIKCTVLDL-PHAVANMPQ----TENLKYIAGDMFQY-----IP--PADAYFFKLVF 263 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~ri~~~~~D~~~~-----~p--~~D~i~~~~~l 263 (360)
...+||+=+|||.+++.+++ +.-+++.+|. +..++..++ .++++++..|.+.. .| .||+|++==-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 45689999999999999988 3578999999 877765553 57899999997651 12 59999873222
Q ss_pred ccCChhHHHHHHHHHHHhc--cCCCCCcEEEEEeeecCC
Q 018116 264 HAFGDEDCLKILKKCREAI--AGNGERGKVLIMDIVINE 300 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L--~p~~~gG~lli~e~~~~~ 300 (360)
. . .++..++++.+.+.. .| +|.++|.=++...
T Consensus 170 e-~-k~~~~~vl~~L~~~~~r~~---~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 170 E-R-KEEYKEIPYAIKNAYSKFS---TGLYCVWYPVVNK 203 (283)
T ss_dssp C-S-TTHHHHHHHHHHHHHHHCT---TSEEEEEEEESSH
T ss_pred C-C-CcHHHHHHHHHHHhCccCC---CeEEEEEEeccch
Confidence 2 1 123455566555533 45 7888887776554
No 456
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=87.77 E-value=0.43 Score=37.72 Aligned_cols=51 Identities=12% Similarity=0.295 Sum_probs=43.0
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEE
Confidence 556677888887655799999999988 55 5688999999999999999865
No 457
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=87.48 E-value=0.27 Score=41.88 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=42.0
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 54 ITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 54 ~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
.+..+||+.+++ +...+.+.|+.|...|++++.. +..+.+|+.|..+..
T Consensus 25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG------DRHLELTEKGRALAI 73 (230)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHHHHH
T ss_pred CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC------CccEEECHHHHHHHH
Confidence 345999999999 5688999999999999999986 467999999986543
No 458
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=87.09 E-value=0.36 Score=40.01 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 51 GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 51 ~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.|.|..|||+.+|++ ...+.+.|+.|...|++.+..
T Consensus 22 g~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 22 GYPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SSCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence 3589999999999995 457999999999999999874
No 459
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=86.80 E-value=2.1 Score=38.51 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHCCCCe-E-EEeec-hHHHhcCCC--CCCeEEEeCCCCC-C---CC--CccEEEecccc
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAFPGIK-C-TVLDL-PHAVANMPQ--TENLKYIAGDMFQ-Y---IP--PADAYFFKLVF 263 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~--~~ri~~~~~D~~~-~---~p--~~D~i~~~~~l 263 (360)
...+++|+-||.|.++..+.++.-..+ + .++|+ +.+.+..+. ... +..+|+.+ . ++ .+|+++...--
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpPC 86 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPPC 86 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCCC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCCc
Confidence 356899999999999999988732234 4 58998 766654432 121 56778866 1 23 58999986655
Q ss_pred ccC-----------ChhHHHHHHHHHHH-hccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHH
Q 018116 264 HAF-----------GDEDCLKILKKCRE-AIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEE 331 (360)
Q Consensus 264 h~~-----------~~~~~~~~L~~~~~-~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 331 (360)
..+ .|+ .-.++..+.+ +++.....-+++++|.+..-. .+ .+.+.
T Consensus 87 Q~fs~S~ag~~~~~~d~-r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~---------------------~~--~~~~~ 142 (327)
T 3qv2_A 87 QPYNNSIMSKHKDINDP-RAKSVLHLYRDILPYLINKPKHIFIENVPLFK---------------------ES--LVFKE 142 (327)
T ss_dssp TTCSHHHHTTTCTTTCG-GGHHHHHHHHTTGGGCSSCCSEEEEEECGGGG---------------------GS--HHHHH
T ss_pred cCcccccCCCCCCCccc-cchhHHHHHHHHHHHhccCCCEEEEEchhhhc---------------------Ch--HHHHH
Confidence 545 222 2245555555 443200013678888664210 01 24577
Q ss_pred HHHHHHHCCCceeE
Q 018116 332 WKTLFLDAGFTHYK 345 (360)
Q Consensus 332 ~~~ll~~aGf~~~~ 345 (360)
+.+.|++.||.+..
T Consensus 143 i~~~l~~~GY~v~~ 156 (327)
T 3qv2_A 143 IYNILIKNQYYIKD 156 (327)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 88889999997543
No 460
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=86.76 E-value=0.35 Score=37.49 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=44.9
Q ss_pred HHHhCcchhhhhCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceec
Q 018116 38 AVELGIADIIHSHG-RPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGL 102 (360)
Q Consensus 38 a~~l~lf~~L~~~~-~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~ 102 (360)
-.+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.... ++..+|.+
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~--~~~~~Y~~ 83 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHNFD--GGHAVFEL 83 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEECSS--SSSCEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEEeC--CCceEEEe
Confidence 34566888887654 689999999988 55 568899999999999999987521 11345765
No 461
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=86.48 E-value=0.63 Score=35.63 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=32.3
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
..|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4799999999999 6799999999999999999864
No 462
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=86.35 E-value=0.44 Score=37.09 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
+..+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.... ++..+|.+.
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~--~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLRTA--EGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEECT--TSCEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEEcC--CCceEEEEC
Confidence 445677888887655799999999987 34 567899999999999999987521 113457664
No 463
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=86.20 E-value=3.7 Score=30.98 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=50.3
Q ss_pred CEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEeccccccC
Q 018116 197 GSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHAF 266 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~~ 266 (360)
.+|+=+|+ |.++..+++.+ .+.+++++|. ++.++.+.....+.++.+|..++ ..++|+|+..-
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~----- 77 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT----- 77 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee-----
Confidence 47888887 55554444433 3578999998 66555443222466777776541 34689987752
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 267 GDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 267 ~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
++++....+..+.+.+++ +++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred CCchHHHHHHHHHHHcCC----CEEEE
Confidence 333333345555566776 46554
No 464
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=86.16 E-value=0.79 Score=31.31 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=40.0
Q ss_pred chhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecc
Q 018116 44 ADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLT 103 (360)
Q Consensus 44 f~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 103 (360)
++.|.. ++..|+.+||.++|+ +..-+.|.|--|...|.|..... +.-.|..+
T Consensus 21 i~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~~----~PP~W~~~ 72 (75)
T 1sfu_A 21 VLSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVPS----NPPKWFKN 72 (75)
T ss_dssp HHTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEECC----SSCEEEEC
T ss_pred HHhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCCC----CCCCccCC
Confidence 346665 245999999999999 56889999999999999988752 24455544
No 465
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=86.10 E-value=0.85 Score=34.26 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=51.7
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHc------CCCCCCcccHHHHHHHHHhCCceecccc-CCCC-cccceecch
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSAL------KIQPTKTSNLFRFMRLLVHMGLFSKTKV-GGEK-EEEAYGLTA 104 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~------~~~p~~~~~l~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~t~ 104 (360)
..++-.+++=|+..|.. +|.+--||++.+ ++ ++..+...|+.|...|+++.... +++| ..-.|++|+
T Consensus 8 ~l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~ 82 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEI---VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTS 82 (116)
T ss_dssp HHHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSC---CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECH
T ss_pred HHHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 34444555566667765 799999999987 45 57899999999999999987532 1111 122499999
Q ss_pred hhhhhh
Q 018116 105 ISALLI 110 (360)
Q Consensus 105 ~~~~l~ 110 (360)
.|+...
T Consensus 83 ~G~~~l 88 (116)
T 3hhh_A 83 SGEAEL 88 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998444
No 466
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=85.97 E-value=1.1 Score=41.82 Aligned_cols=53 Identities=8% Similarity=0.017 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCCCchHHHHHH-HHCCC-CeEEEeec-hHHHhcCCC---------C-CCeEEEeCC
Q 018116 194 EGLGSIVDVGGGNGGFSKIIS-EAFPG-IKCTVLDL-PHAVANMPQ---------T-ENLKYIAGD 246 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---------~-~ri~~~~~D 246 (360)
.+...++|||++.|.++..++ +..+. .+++.++. |...+..++ . ++++++..-
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~a 290 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCG 290 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeE
Confidence 577899999999999999988 56665 79999998 776654432 2 566666543
No 467
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=85.91 E-value=1.3 Score=33.22 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=51.8
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceecccc-CCCC-cccceec
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSAL--------KIQPTKTSNLFRFMRLLVHMGLFSKTKV-GGEK-EEEAYGL 102 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~--------~~~p~~~~~l~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~ 102 (360)
..++-.+++=|+..|.. +|.+--+|.+.+ ++ ++..+...|+.|...|+++.... +.++ ..-.|++
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 44555566666777775 799999999877 45 67899999999999999987531 0111 1234999
Q ss_pred chhhhhhh
Q 018116 103 TAISALLI 110 (360)
Q Consensus 103 t~~~~~l~ 110 (360)
|+.|+...
T Consensus 82 T~~G~~~l 89 (116)
T 3f8b_A 82 TEIGHENM 89 (116)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99998544
No 468
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=85.67 E-value=0.83 Score=45.62 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=68.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC-------CC-----CeEEEeec-h---HHHhcC-C----------------------
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF-------PG-----IKCTVLDL-P---HAVANM-P---------------------- 235 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a-~---------------------- 235 (360)
+..+|+|+|-|+|.......+.+ |. ++++.++. | ..+..+ .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45799999999999877766643 22 56788775 3 122110 0
Q ss_pred ------CCC--CeEEEeCCCCC---CC-----CCccEEEecccc-ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 018116 236 ------QTE--NLKYIAGDMFQ---YI-----PPADAYFFKLVF-HAFGDEDCLKILKKCREAIAGNGERGKVLIMDIVI 298 (360)
Q Consensus 236 ------~~~--ri~~~~~D~~~---~~-----p~~D~i~~~~~l-h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~~~ 298 (360)
... ++++..||+.+ .+ ..+|.+++-..- ..-++-.-..+++.+.++++| |+.+.-..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t~~--- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFSTFT--- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEEESC---
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEEecc---
Confidence 011 45667778755 12 248887762211 100111124678888888888 66543210
Q ss_pred CCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHCCCceeEEE
Q 018116 299 NEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDAGFTHYKIT 347 (360)
Q Consensus 299 ~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
.....++.+.++||.+.++.
T Consensus 212 -----------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 -----------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp -----------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred -----------------------------CcHHHHHHHHhCCeEEEecc
Confidence 12456777889999877655
No 469
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=85.66 E-value=0.87 Score=34.24 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHHHHHhCcchhhhhCCCCCCHHHHHHHcC------CCCCCcccHHHHHHHHHhCCceecccc-CCCC-cccceecch
Q 018116 33 MSLKGAVELGIADIIHSHGRPITLSELVSALK------IQPTKTSNLFRFMRLLVHMGLFSKTKV-GGEK-EEEAYGLTA 104 (360)
Q Consensus 33 ~~L~~a~~l~lf~~L~~~~~~~t~~ela~~~~------~~p~~~~~l~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~t~ 104 (360)
+.++-.+++-|+..|.. +|.+.-||++.+. + ++..+...|+.|...|+++.... ..++ ....|++|+
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~ 83 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITD 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECH
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 44555566667777775 7999999998875 6 45899999999999999987542 1111 123599999
Q ss_pred hhhhhh
Q 018116 105 ISALLI 110 (360)
Q Consensus 105 ~~~~l~ 110 (360)
.|+...
T Consensus 84 ~G~~~l 89 (117)
T 3elk_A 84 AGKKFL 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998444
No 470
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=85.55 E-value=0.81 Score=38.77 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=42.8
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 53 PITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 53 ~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+.+..+||+.+++ ++..+.++++.|...|++++.. ...+.+|+.|..+..
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS------DRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC------CCCeEECHHHHHHHH
Confidence 4466999999999 5689999999999999999986 467999999986553
No 471
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=85.49 E-value=2.6 Score=32.41 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=53.1
Q ss_pred CCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEecccccc
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFKLVFHA 265 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~~~lh~ 265 (360)
..+|+=+|||. ++..+++.+ .+.+++++|. ++.++.+++ ..+.++.+|...+ ..++|++++.--
T Consensus 7 ~~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~--- 80 (140)
T 3fwz_A 7 CNHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP--- 80 (140)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS---
T ss_pred CCCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC---
Confidence 35788888864 444444332 3678999999 777776653 5678888998662 135898876421
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEE
Q 018116 266 FGDEDCLKILKKCREAIAGNGERGKVLI 293 (360)
Q Consensus 266 ~~~~~~~~~L~~~~~~L~p~~~gG~lli 293 (360)
++.....+.. ..+.+.| +.+++.
T Consensus 81 -~~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 81 -NGYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp -CHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred -ChHHHHHHHH-HHHHHCC---CCeEEE
Confidence 2333333444 4455667 566554
No 472
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=85.35 E-value=0.84 Score=37.80 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhh
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLI 110 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 110 (360)
++++..+||+.+++ .++.+...++.|...|+++... +...+|+.|..++
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~~-------~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ-------RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC-------CCeEECHHHHHHH
Confidence 58999999999999 5799999999999999999984 7899999998655
No 473
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=84.95 E-value=0.91 Score=41.81 Aligned_cols=36 Identities=11% Similarity=0.275 Sum_probs=28.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHC-------CCCeEEEeechH
Q 018116 194 EGLGSIVDVGGGNGGFSKIISEAF-------PGIKCTVLDLPH 229 (360)
Q Consensus 194 ~~~~~iLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~ 229 (360)
+...+|+|+|+|+|.++..+++.+ ..+++..++.+.
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 345689999999999999888653 355899999933
No 474
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=84.69 E-value=2 Score=42.67 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=23.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHC-------C-----CCeEEEeec
Q 018116 195 GLGSIVDVGGGNGGFSKIISEAF-------P-----GIKCTVLDL 227 (360)
Q Consensus 195 ~~~~iLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~ 227 (360)
+.-+|+|+|-|+|.......+.+ | .++++.++.
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 110 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 110 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeC
Confidence 44699999999998777665543 2 245788875
No 475
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=84.57 E-value=0.66 Score=33.23 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=38.1
Q ss_pred hCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 41 LGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 41 l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.|+..|..+ +.+++..|||.++++ +..-+.++|+.|...|++.+..
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 4455666542 148999999999999 5789999999999999999653
No 476
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=84.52 E-value=0.47 Score=45.08 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred HhCcchhhhhC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSH-GRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~-~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|... ++++|..|||+++++ +...+.|+++.|...|+|++....+|+-.-...+|+.++.+..
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~ 475 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQ 475 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHH
Confidence 35667777652 158999999999999 6799999999999999999875322221224888888876553
No 477
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=84.47 E-value=0.9 Score=34.34 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=43.5
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
.-.|.+.+.. .|.++.+||+.+++ ++..+..+|+.|+..|.+.+-. ++.|.++..
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~------~~~~~~~~~ 63 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV------KDRYYRNDR 63 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec------CCceECHHH
Confidence 3445666653 57899999999999 5788999999999999999886 466666554
No 478
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=84.46 E-value=4.2 Score=33.40 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=58.2
Q ss_pred EEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC----CCCccEEEeccccccCChhH
Q 018116 198 SIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY----IPPADAYFFKLVFHAFGDED 270 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~----~p~~D~i~~~~~lh~~~~~~ 270 (360)
+||=.| |+|..+..+++.+ .+.++++++. +...+... .+++++.+|+.++ +.++|+|+..-....-....
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~ 78 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEK 78 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTS
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCccccch
Confidence 455444 5666666666544 3678999988 55444332 6799999999763 24689987655443222222
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 271 CLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 271 ~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.....+++.++++..+ .++++++-.
T Consensus 79 ~~~~~~~l~~a~~~~~-~~~~v~~SS 103 (221)
T 3ew7_A 79 HVTSLDHLISVLNGTV-SPRLLVVGG 103 (221)
T ss_dssp HHHHHHHHHHHHCSCC-SSEEEEECC
T ss_pred HHHHHHHHHHHHHhcC-CceEEEEec
Confidence 4456677777776521 467776654
No 479
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=84.43 E-value=0.88 Score=36.99 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=46.9
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeccccCCCC--cccceecchhhhh
Q 018116 40 ELGIADIIHSHGRPITLSELVSAL--------KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK--EEEAYGLTAISAL 108 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~--------~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~~~y~~t~~~~~ 108 (360)
++-|+..|.. +|.+.-||++.+ ++ +...+...|+.|...|+++......++ ..-.|++|+.|+.
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 4456677775 799999999988 45 568999999999999999875421111 1234999999973
No 480
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=84.02 E-value=0.54 Score=36.42 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=39.3
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALK----IQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~----~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.|+..|....++.|..||++.++ + +..-+.++|+-|...|+|.+..
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4556666654226999999999998 5 5688999999999999999875
No 481
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=83.68 E-value=2.9 Score=36.51 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=50.2
Q ss_pred CEEEEeCCCCc--hHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCCccEEEeccccccCChhHHHH
Q 018116 197 GSIVDVGGGNG--GFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQYIPPADAYFFKLVFHAFGDEDCLK 273 (360)
Q Consensus 197 ~~iLDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~ 273 (360)
.+|.=||+|.= .++..+.+..++.+++++|. ++..+.+.+...+.....|..+...+.|+|++. .++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 57888998852 34455555544678999998 665554432111111223332223468998875 35555677
Q ss_pred HHHHHHHh-ccC
Q 018116 274 ILKKCREA-IAG 284 (360)
Q Consensus 274 ~L~~~~~~-L~p 284 (360)
+++.+... +++
T Consensus 82 v~~~l~~~~l~~ 93 (290)
T 3b1f_A 82 FIKILADLDLKE 93 (290)
T ss_dssp HHHHHHTSCCCT
T ss_pred HHHHHHhcCCCC
Confidence 88888887 887
No 482
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=83.62 E-value=0.67 Score=36.38 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=51.6
Q ss_pred HHHHHHHhCcchhhhhCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeccccC-CCC-cccceecc
Q 018116 34 SLKGAVELGIADIIHSHGRPITLSELVSAL--------KIQPTKTSNLFRFMRLLVHMGLFSKTKVG-GEK-EEEAYGLT 103 (360)
Q Consensus 34 ~L~~a~~l~lf~~L~~~~~~~t~~ela~~~--------~~~p~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t 103 (360)
+++.-.++-|+..|.. +|.+.-||++.+ ++ ++..+.+.|+.|...|+|+..... +++ ..-.|++|
T Consensus 37 ~~~g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT 111 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRIT 111 (145)
T ss_dssp SGGGTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEEC
T ss_pred HhcCcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEEC
Confidence 3444456667777765 689999988877 46 579999999999999999876421 001 12349999
Q ss_pred hhhhhhh
Q 018116 104 AISALLI 110 (360)
Q Consensus 104 ~~~~~l~ 110 (360)
+.|+.+.
T Consensus 112 ~~G~~~l 118 (145)
T 1xma_A 112 PEGIKYY 118 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998554
No 483
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=83.47 E-value=0.74 Score=31.72 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+.+++.++|+.+++. ..+++..++.+|.++|++++..
T Consensus 29 ~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 689999999999993 2599999999999999999985
No 484
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=83.38 E-value=0.93 Score=39.11 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=50.6
Q ss_pred HhCcchhhhhCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHG-RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~-~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
++.++..|...+ ++.|..|||+.+++ +...+.++++-|...|++.+....+|.-.-...+|+.|..+..
T Consensus 36 q~~vL~~L~~~~~~~~~~~el~~~l~~---~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~ 105 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIA 105 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHH
Confidence 355666665421 48999999999999 6799999999999999999875322111123789999886543
No 485
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=83.01 E-value=3 Score=38.40 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=61.8
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe---CCC-CCC------CCCccEEEec
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIA---GDM-FQY------IPPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~---~D~-~~~------~p~~D~i~~~ 260 (360)
..++.+||.+|+|. |.++..+++.....+++++|. ++-++.+++.. .+++. .|+ .+. -.++|+|+-.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEVDCGVDA 261 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 66788999999876 888888998764338999997 66666655422 12222 122 110 1159998764
Q ss_pred cccccCC--h----hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 018116 261 LVFHAFG--D----EDCLKILKKCREAIAGNGERGKVLIMDIV 297 (360)
Q Consensus 261 ~~lh~~~--~----~~~~~~L~~~~~~L~p~~~gG~lli~e~~ 297 (360)
---.... . ......++.+.++|++ ||+++++-..
T Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---gG~iv~~G~~ 301 (398)
T 2dph_A 262 VGFEAHGLGDEANTETPNGALNSLFDVVRA---GGAIGIPGIY 301 (398)
T ss_dssp SCTTCBCSGGGTTSBCTTHHHHHHHHHEEE---EEEEECCSCC
T ss_pred CCCccccccccccccccHHHHHHHHHHHhc---CCEEEEeccc
Confidence 3221100 0 0011357888899999 9998876543
No 486
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=82.67 E-value=7.2 Score=33.56 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=57.7
Q ss_pred CEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCCccEEEeccccccCChhHHH
Q 018116 197 GSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQ-YIPPADAYFFKLVFHAFGDEDCL 272 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~~~~lh~~~~~~~~ 272 (360)
.+||=.|+ |..+..+++.+ .+.++++++. +.-.+... ..+++++.+|+.+ ...++|+|+.........++...
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccccHHHH
Confidence 57999994 88888887765 3568999988 44333222 3568999999865 34568988775554433333334
Q ss_pred HHHHHHHHhccCCCCCcEEEEEee
Q 018116 273 KILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 273 ~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.+++.+.+.-.. -.+++.+-.
T Consensus 83 ~l~~a~~~~~~~---~~~~v~~Ss 103 (286)
T 3ius_A 83 ALGDQIAARAAQ---FRWVGYLST 103 (286)
T ss_dssp HHHHHHHHTGGG---CSEEEEEEE
T ss_pred HHHHHHHhhcCC---ceEEEEeec
Confidence 455554442122 256665543
No 487
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=82.42 E-value=6.5 Score=29.88 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=42.1
Q ss_pred CCEEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCCccEEEec
Q 018116 196 LGSIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY-------IPPADAYFFK 260 (360)
Q Consensus 196 ~~~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~~ 260 (360)
..+|+-+||| .++..+++.+ .+.+++++|. ++.++.+.. ..+.++.+|..++ ..++|+++..
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 3578888885 4555555543 3678999998 776665542 3578888998662 2368988764
No 488
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=82.26 E-value=1.1 Score=34.71 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceecc
Q 018116 52 RPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKT 89 (360)
Q Consensus 52 ~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~ 89 (360)
...|.++||+++|+ ++.-+.++|+-|...|++...
T Consensus 50 ~~ps~~~LA~~~~~---s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSI---SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999 679999999999999999985
No 489
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=82.18 E-value=0.55 Score=37.08 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=40.7
Q ss_pred HHHhCcchhhhhCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 38 AVELGIADIIHSHG-RPITLSELVSAL-----KIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 38 a~~l~lf~~L~~~~-~~~t~~ela~~~-----~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
-.+.-|++.|.... ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 34566788886544 689999999988 45 5678999999999999999874
No 490
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=81.99 E-value=0.9 Score=40.80 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=44.8
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchh
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAI 105 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 105 (360)
+..|++.|.. ++..|.+|||+.+++ +...+.|-++.|...|++.+... +..|++.+.
T Consensus 7 ~~~Il~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~-----g~GY~l~~~ 63 (321)
T 1bia_A 7 PLKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-----GKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-----TTEEECSSC
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec-----CCCcEEeec
Confidence 3456777765 368999999999999 67999999999999999865442 356888653
No 491
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=81.98 E-value=3.5 Score=36.95 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=59.4
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCC-CeEEEeC--CCCCC----CCCccEEEecccc
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTE-NLKYIAG--DMFQY----IPPADAYFFKLVF 263 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-ri~~~~~--D~~~~----~p~~D~i~~~~~l 263 (360)
..++.+||-+|+|. |..+..+++.. +.+++++|. ++-.+.+++.. ...+... |+.+. .+++|+++....
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 56788999999875 88888899876 569999998 66666554311 1111111 11110 125888875422
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 264 HAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 264 h~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
. ...++.+.+.|+| ||+++++-.
T Consensus 242 ---~----~~~~~~~~~~l~~---~G~iv~~G~ 264 (340)
T 3s2e_A 242 ---S----PKAFSQAIGMVRR---GGTIALNGL 264 (340)
T ss_dssp ---C----HHHHHHHHHHEEE---EEEEEECSC
T ss_pred ---C----HHHHHHHHHHhcc---CCEEEEeCC
Confidence 1 2457888899999 899987654
No 492
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=81.96 E-value=0.77 Score=33.92 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=47.7
Q ss_pred HHHHhCcchhhhhCCCCCCHHHHHHHc----CCCCCCcccHHHHHHHHHhCCceeccccCCCC-cccceecchhhhhhh
Q 018116 37 GAVELGIADIIHSHGRPITLSELVSAL----KIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEK-EEEAYGLTAISALLI 110 (360)
Q Consensus 37 ~a~~l~lf~~L~~~~~~~t~~ela~~~----~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~-~~~~y~~t~~~~~l~ 110 (360)
...++-|+..|.. +|.+--+|++.+ ++ ++..+.+.|+.|...|+|+......++ ....|++|+.|....
T Consensus 8 g~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i---~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 8 LLIEYLILAIVSK--HDSYGYDISQTIKLIASI---KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHH--SCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCcHHHHHHHHHHHhCC---CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 3345556666665 688777777764 67 568999999999999999876421111 012399999998544
No 493
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=81.76 E-value=8.6 Score=31.58 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=60.1
Q ss_pred EEEEeCCCCchHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC----CCCccEEEecccccc--CCh
Q 018116 198 SIVDVGGGNGGFSKIISEAF--PGIKCTVLDL-PHAVANMPQTENLKYIAGDMFQY----IPPADAYFFKLVFHA--FGD 268 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D~~~~----~p~~D~i~~~~~lh~--~~~ 268 (360)
+||=. ||+|..+..+++.+ .+.++++++. +.-.+... ..+++++.+|+.++ +.+.|+|+..-...+ ...
T Consensus 2 kilVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~ 79 (224)
T 3h2s_A 2 KIAVL-GATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL-GATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRG 79 (224)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT-CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCT
T ss_pred EEEEE-cCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc-CCCceEEecccccccHhhcccCCEEEECCccCCCcchh
Confidence 35544 45677666666654 3678999988 55444332 46799999999763 346898876554421 112
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 269 EDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 269 ~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.......+++.++++.. |++++++-.
T Consensus 80 ~~n~~~~~~l~~a~~~~--~~~~v~~SS 105 (224)
T 3h2s_A 80 YLHLDFATHLVSLLRNS--DTLAVFILG 105 (224)
T ss_dssp HHHHHHHHHHHHTCTTC--CCEEEEECC
T ss_pred hHHHHHHHHHHHHHHHc--CCcEEEEec
Confidence 33456677888888763 577777643
No 494
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=81.53 E-value=3.9 Score=37.31 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCC-CchHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe-C----CCCC---C-C-CCccEEEec
Q 018116 193 FEGLGSIVDVGGG-NGGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIA-G----DMFQ---Y-I-PPADAYFFK 260 (360)
Q Consensus 193 ~~~~~~iLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~-~----D~~~---~-~-p~~D~i~~~ 260 (360)
..++.+||-+|+| .|.++..+++.....+++++|. ++-++.+++..--.++. . |+.+ . . .++|+|+-.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~ 270 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFEC 270 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEEC
Confidence 5677899999987 4778888888764338999996 66666655421111221 1 1111 0 1 259998754
Q ss_pred cccccCChhHHHHHHHHHHHhccCCCCC-cEEEEEeee
Q 018116 261 LVFHAFGDEDCLKILKKCREAIAGNGER-GKVLIMDIV 297 (360)
Q Consensus 261 ~~lh~~~~~~~~~~L~~~~~~L~p~~~g-G~lli~e~~ 297 (360)
- .. ...++.+.+.|++ | |+++++-..
T Consensus 271 ~-----g~---~~~~~~~~~~l~~---g~G~iv~~G~~ 297 (378)
T 3uko_A 271 I-----GN---VSVMRAALECCHK---GWGTSVIVGVA 297 (378)
T ss_dssp S-----CC---HHHHHHHHHTBCT---TTCEEEECSCC
T ss_pred C-----CC---HHHHHHHHHHhhc---cCCEEEEEccc
Confidence 2 22 2457888899999 8 998887654
No 495
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=81.47 E-value=0.29 Score=44.50 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccccCCCCcccceecchhhhhhhc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTKVGGEKEEEAYGLTAISALLIK 111 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 111 (360)
+..++..|... +++|..|||+.+++ ++.-++|.|+.|...|+++... ....+|+.|+.+..
T Consensus 22 ~~~iL~~l~~~-~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~-------~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 22 RFQILRNIYWM-QPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK-------SGMTLTERGLEVYQ 82 (345)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe-------cceEEcHHHHHHHH
Confidence 56677777664 79999999999999 6789999999999999998553 55889998886654
No 496
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=81.40 E-value=4.8 Score=36.36 Aligned_cols=93 Identities=10% Similarity=0.056 Sum_probs=58.5
Q ss_pred cCCCCEEEEeCCCC-chHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC------CCCC-----CCCccEEEe
Q 018116 193 FEGLGSIVDVGGGN-GGFSKIISEAFPGIKCTVLDL-PHAVANMPQTENLKYIAGD------MFQY-----IPPADAYFF 259 (360)
Q Consensus 193 ~~~~~~iLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ri~~~~~D------~~~~-----~p~~D~i~~ 259 (360)
..++.+||-+|+|. |.++..+++.....+++++|. ++-.+.+++..--.++..+ +.+. ..++|+|+-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 56788999999875 788888988764338999987 6555554431111122111 1110 135899875
Q ss_pred ccccccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 018116 260 KLVFHAFGDEDCLKILKKCREAIAGNGERGKVLIMDI 296 (360)
Q Consensus 260 ~~~lh~~~~~~~~~~L~~~~~~L~p~~~gG~lli~e~ 296 (360)
.-- . ...++.+.++|+| ||+++++-.
T Consensus 249 ~~g-----~---~~~~~~~~~~l~~---~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTG-----A---EASIQAGIYATRS---GGTLVLVGL 274 (356)
T ss_dssp CSC-----C---HHHHHHHHHHSCT---TCEEEECSC
T ss_pred CCC-----C---hHHHHHHHHHhcC---CCEEEEEec
Confidence 421 1 1347778889999 999988754
No 497
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=80.99 E-value=6.8 Score=34.84 Aligned_cols=119 Identities=15% Similarity=0.213 Sum_probs=71.9
Q ss_pred EEEEeCCCCchHHHHHHHHCCCCeE-EEeec-hHHHhcCCCCCCeEEEeCCCCC----CCCCccEEEeccccccC-----
Q 018116 198 SIVDVGGGNGGFSKIISEAFPGIKC-TVLDL-PHAVANMPQTENLKYIAGDMFQ----YIPPADAYFFKLVFHAF----- 266 (360)
Q Consensus 198 ~iLDvG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~~~ri~~~~~D~~~----~~p~~D~i~~~~~lh~~----- 266 (360)
+|+|+=||.|.++..+-++ +.++ .++|+ +.+++.-+..-.-.++.+|+.+ .+|..|+++...-...+
T Consensus 2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~ 79 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGS 79 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTE
T ss_pred eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCC
Confidence 6899999999999998877 5654 46777 6555433321123567888865 35679998875433333
Q ss_pred ----ChhHHHHHHH---HHHHhccCCCCCcEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHHC
Q 018116 267 ----GDEDCLKILK---KCREAIAGNGERGKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLDA 339 (360)
Q Consensus 267 ----~~~~~~~~L~---~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 339 (360)
.|+. -.++. ++.+.++| +++++|.+..-.. ........++.+.|++.
T Consensus 80 ~~g~~d~R-~~L~~~~~r~i~~~~P-----k~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l~~~ 133 (331)
T 3ubt_Y 80 LRGIDDPR-GKLFYEYIRILKQKKP-----IFFLAENVKGMMA--------------------QRHNKAVQEFIQEFDNA 133 (331)
T ss_dssp ECCTTCGG-GHHHHHHHHHHHHHCC-----SEEEEEECCGGGG--------------------CTTSHHHHHHHHHHHHH
T ss_pred ccCCCCch-hHHHHHHHHHHhccCC-----eEEEeeeeccccc--------------------ccccchhhhhhhhhccC
Confidence 2322 12333 34445677 5777787642110 01122456778888899
Q ss_pred CCcee
Q 018116 340 GFTHY 344 (360)
Q Consensus 340 Gf~~~ 344 (360)
||.+.
T Consensus 134 GY~v~ 138 (331)
T 3ubt_Y 134 GYDVH 138 (331)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 98643
No 498
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=80.79 E-value=1.1 Score=32.85 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=36.9
Q ss_pred HhCcchhhhhCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPI-TLSELVSALKIQPTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~-t~~ela~~~~~~p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
+..|...|.. ++.+ |..+||+.+|+ +..-+++-|+.|...|+++...
T Consensus 30 ~~~I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3444455544 2455 99999999999 5688999999999999998774
No 499
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=80.28 E-value=2.2 Score=38.39 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=74.0
Q ss_pred CEEEEeCCCCchHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCC-C---CC--CccEEEeccccccCC
Q 018116 197 GSIVDVGGGNGGFSKIISEAFPGIK-CTVLDL-PHAVANMPQ-TENLKYIAGDMFQ-Y---IP--PADAYFFKLVFHAFG 267 (360)
Q Consensus 197 ~~iLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~ri~~~~~D~~~-~---~p--~~D~i~~~~~lh~~~ 267 (360)
.+++|+=||.|.+...+.++.-+.+ +.++|. +.+.+.-+. .+...+..+|+.+ . ++ .+|+++...--..++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 4799999999999999998732224 567888 666554332 3344567788865 1 23 589988755444332
Q ss_pred h--------hHHHHHHHHHHHhccCCCCC-cEEEEEeeecCCCCcchhhhhHhHhhhhhhhcccCCcccCHHHHHHHHHH
Q 018116 268 D--------EDCLKILKKCREAIAGNGER-GKVLIMDIVINEKEDKHQVTEAKLLGDTLMSVSVDGKERTDEEWKTLFLD 338 (360)
Q Consensus 268 ~--------~~~~~~L~~~~~~L~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~ 338 (360)
. +..-.++..+.++++.. . -+++++|.+..-.. + .+.+.+.+.|++
T Consensus 84 ~ag~~~~~~d~r~~L~~~~~r~i~~~--~~P~~~vlENV~gl~~---------------------~--~~~~~i~~~l~~ 138 (333)
T 4h0n_A 84 RNGKYLDDNDPRTNSFLYLIGILDQL--DNVDYILMENVKGFEN---------------------S--TVRNLFIDKLKE 138 (333)
T ss_dssp ETTEECCTTCTTSCCHHHHHHHGGGC--TTCCEEEEEECTTGGG---------------------S--HHHHHHHHHHHH
T ss_pred hhhhccCCcCcccccHHHHHHHHHHh--cCCCEEEEecchhhhh---------------------h--hHHHHHHHHHHh
Confidence 1 11112333444443220 1 26788887642110 0 134678888999
Q ss_pred CCCceeEE
Q 018116 339 AGFTHYKI 346 (360)
Q Consensus 339 aGf~~~~~ 346 (360)
.||.+...
T Consensus 139 ~GY~v~~~ 146 (333)
T 4h0n_A 139 CNFIYQEF 146 (333)
T ss_dssp TTEEEEEE
T ss_pred CCCeEEEE
Confidence 99976443
No 500
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=80.26 E-value=0.63 Score=35.12 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=39.2
Q ss_pred HhCcchhhhhCCCCCCHHHHHHHcCCC-CCCcccHHHHHHHHHhCCceeccc
Q 018116 40 ELGIADIIHSHGRPITLSELVSALKIQ-PTKTSNLFRFMRLLVHMGLFSKTK 90 (360)
Q Consensus 40 ~l~lf~~L~~~~~~~t~~ela~~~~~~-p~~~~~l~~lL~~L~~~g~l~~~~ 90 (360)
++.++..|... ++.|..|||+.++.+ +-+..-+.++|+-|...|+|.+..
T Consensus 12 q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 12 EWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 45566666653 699999999999741 004688999999999999999976
Done!