BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018119
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 174/349 (49%), Gaps = 31/349 (8%)
Query: 10 AMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVG 69
+M GG GQ SYA NS Q+ + ++ + + + LN +S+S F+ DLGCS G
Sbjct: 8 SMKGGKGQDSYANNSLAQAMHARSMLHLLEETL-ENVHLN--SSASPPPFTAVDLGCSSG 64
Query: 70 PNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP------------ 117
NT + + I+ + + + G D EF FF+DL SNDFN L++ LP
Sbjct: 65 ANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECL 124
Query: 118 ---SDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIY 174
+R Y+ AGVPGSF+ RLFP +I+FFH ++ L WLS P+ + D+ S AYN+GR++
Sbjct: 125 AADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVF 184
Query: 175 YSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLP----DGISPGECSVL 230
+ AY + + FL ARA E+ GG M L+ CL D G +L
Sbjct: 185 IHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV--CLGRTSVDPTDQGGAGLL 242
Query: 231 ASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF------ 284
D D+ + GL++ + D FN+P Y P+ Q+ K ++ N SF+I+K
Sbjct: 243 FGTH-FQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGG 301
Query: 285 EPLALSAQRQLATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKK 333
PL ++ + S R+ +LV+ H G + LF R +
Sbjct: 302 SPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESR 350
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/356 (34%), Positives = 175/356 (49%), Gaps = 28/356 (7%)
Query: 11 MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
M GG G+ SYA NS Q + K I I+ + V + +IADLGCS GP
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTR----LAIADLGCSSGP 64
Query: 71 NTFNAVQNIIDSVKLKCQSYGHDKL-EFQVFFNDLVSNDFNALYKSLP----SDRQYYAA 125
N AV +I +V+ + G + E+Q+F NDL NDFNA+++SLP D +
Sbjct: 65 NALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFIN 124
Query: 126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRG-PNEVVE 184
GVPGSF+ RLFP+ +++F H SY L WLS P + NKG IY + P V+
Sbjct: 125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNIYMANTCPQSVLN 178
Query: 185 AYSAESAKGIESFLLARAQELASGGLMAL-IVPCLPDGISPGECSVLASADLLGDCLMDM 243
AY + + FL RAQE+ GG M L I+ + + EC ++ LL L M
Sbjct: 179 AYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQ--LLAMALNQM 236
Query: 244 AKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLAL---------SAQRQ 294
GL+ E ++D FN+P Y P+P E++A + + SF I+ E +
Sbjct: 237 VSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGS 296
Query: 295 LATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLV 350
+ V +RA E L+ +HFG IIED+F R+ I E +T +V
Sbjct: 297 VEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKFINVIV 352
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 176/343 (51%), Gaps = 29/343 (8%)
Query: 11 MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
M GG+G SYA+NS + + K ++ + + + L N + +K +ADLGC+ GP
Sbjct: 9 MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRAN--LPNINKCIKVADLGCASGP 66
Query: 71 NTFNAVQNIIDSVKLKCQSYGHDKLE---FQVFFNDLVSNDFNALYKSLPS--------- 118
NT V++I+ S+ K ++LE Q+F NDL NDFN+++K LPS
Sbjct: 67 NTLLTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRKLEKEN 125
Query: 119 DRQY---YAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYY 175
R+ +PGSF++RLFP+ S++F H Y LQWLS P L + NKG IY
Sbjct: 126 GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNKGSIYS 185
Query: 176 SRGPN-EVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASAD 234
S+ V +AY + K +FL ++EL S G M L C+ G+ E + D
Sbjct: 186 SKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLT--CICKGV---ELDARNAID 240
Query: 235 LLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQ 294
LL + D+ G L E ++DSFNLP Y P+ +E+K +++ SF I E +
Sbjct: 241 LLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAG 300
Query: 295 LATN-----TPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSK 332
+ + V S +RA E ++ HFG II D+F RF+K
Sbjct: 301 FSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAK 343
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/359 (32%), Positives = 178/359 (49%), Gaps = 49/359 (13%)
Query: 11 MMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGP 70
M GG+G SYA+NS + + K ++ + I + L N + +K F + DLGC+ GP
Sbjct: 9 MNGGEGDTSYAKNSSYNLFLIRV-KPVLEQCIQELLRAN--LPNINKCFKVGDLGCASGP 65
Query: 71 NTFNAVQNIIDSVKLKCQSYGHDKLE---FQVFFNDLVSNDFNALYKSLPSDRQYY---- 123
NTF+ V++I+ S+ K ++LE Q+F NDL NDFN+++K LPS +Y
Sbjct: 66 NTFSTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPS---FYRNLE 121
Query: 124 -----------AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGR 172
+PGSF++RLFP+ S++F H Y L WLS P L + + NKG
Sbjct: 122 KENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGC 181
Query: 173 IYYSRGPNEVVE-AYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLA 231
IY S+ ++ AY + K +FL ++EL S G M L C D E
Sbjct: 182 IYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKED-----EFDHPN 236
Query: 232 SADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP----- 286
S DLL + D+ G L E ++DSFN+P Y P+ +E+K +++ SF I E
Sbjct: 237 SMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPY 296
Query: 287 ---LALSAQRQLATNTPT----------VVSHLRANLEILVKEHFGNGIIEDLFDRFSK 332
++ Q +++P V S +R+ E ++ HFG I+ DL R +K
Sbjct: 297 DAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAK 355
>pdb|2FRH|A Chain A, Crystal Structure Of Sara, A Transcription Regulator From
Staphylococcus Aureus
pdb|2FRH|B Chain B, Crystal Structure Of Sara, A Transcription Regulator From
Staphylococcus Aureus
Length = 127
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 255 DSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA-LSAQRQLATNTPTVVSHLRANLEIL 313
D F L S +LK+L+K+ S S E+F L +S ++ +++HL +
Sbjct: 11 DCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQV 70
Query: 314 VKEHFGNGII--EDLFDRFSKKIDESSV 339
VK I+ ED FD+ + DE +V
Sbjct: 71 VK---AVKILSQEDYFDKKRNEHDERTV 95
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 240 LMDMAKMGLLSEAQVDSFNLPSY 262
LM MAK L S+ +DSF +PSY
Sbjct: 313 LMLMAKESLYSQLPIDSFTMPSY 335
>pdb|1FZP|D Chain D, Crystal Structures Of Sara: A Pleiotropic Regulator Of
Virulence Genes In S. Aureus
pdb|1FZP|B Chain B, Crystal Structures Of Sara: A Pleiotropic Regulator Of
Virulence Genes In S. Aureus
Length = 123
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 255 DSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA-LSAQRQLATNTPTVVSHLRANLEIL 313
D F L S +LK+L+K+ S S E+F L +S ++ +++HL +
Sbjct: 7 DCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQV 66
Query: 314 VKEHFGNGII--EDLFDRFSKKIDESSV 339
VK I+ ED FD+ + DE +V
Sbjct: 67 VK---AVKILSQEDYFDKKRNEHDERTV 91
>pdb|2FNP|A Chain A, Crystal Structure Of Sara
pdb|2FNP|B Chain B, Crystal Structure Of Sara
Length = 124
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 255 DSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA-LSAQRQLATNTPTVVSHLRANLEIL 313
D F L S +LK+L+K+ S S E+F L +S ++ +++HL +
Sbjct: 8 DCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYFKDIINHLNYKQPQV 67
Query: 314 VKEHFGNGII--EDLFDRFSKKIDESSV 339
VK I+ ED FD+ + DE +V
Sbjct: 68 VK---AVKILSQEDYFDKKRNEHDERTV 92
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 247 GLLSEAQVDSFN--LPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTP---- 300
GLLS +F L F T +ELK ++KR AS + E A + + TP
Sbjct: 161 GLLSSPLRSAFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAI 220
Query: 301 ----------TVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKI 334
TVV R N +I++K I ++ D F +KI
Sbjct: 221 RLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLDEFDRKI 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,071,313
Number of Sequences: 62578
Number of extensions: 389811
Number of successful extensions: 1481
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 14
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)