Query 018119
Match_columns 360
No_of_seqs 155 out of 527
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:18:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 1E-101 2E-106 762.8 38.1 347 5-357 15-384 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 1.4E-95 3E-100 713.9 26.9 316 38-359 1-334 (334)
3 PRK01683 trans-aconitate 2-met 99.5 9.9E-12 2.1E-16 117.1 22.4 250 16-359 5-257 (258)
4 PRK14103 trans-aconitate 2-met 99.5 8.8E-12 1.9E-16 117.7 20.7 227 17-338 4-232 (255)
5 TIGR02072 BioC biotin biosynth 99.3 3.5E-10 7.7E-15 103.9 17.4 216 18-335 7-223 (240)
6 PRK10258 biotin biosynthesis p 99.1 2.4E-09 5.2E-14 100.6 16.5 207 19-330 19-230 (251)
7 COG4106 Tam Trans-aconitate me 99.0 5.8E-09 1.2E-13 95.6 11.9 212 56-359 29-256 (257)
8 PTZ00098 phosphoethanolamine N 98.9 2.1E-07 4.5E-12 88.7 18.9 196 56-336 51-247 (263)
9 PLN02244 tocopherol O-methyltr 98.8 9.6E-07 2.1E-11 87.2 20.0 158 56-287 117-279 (340)
10 PLN02336 phosphoethanolamine N 98.7 6E-07 1.3E-11 92.1 18.8 189 57-337 266-460 (475)
11 TIGR02752 MenG_heptapren 2-hep 98.7 3.6E-08 7.9E-13 91.2 8.8 171 58-287 46-219 (231)
12 TIGR00740 methyltransferase, p 98.7 2E-07 4.3E-12 87.1 12.3 159 58-280 54-221 (239)
13 PRK08317 hypothetical protein; 98.7 5.7E-06 1.2E-10 75.7 21.5 220 56-359 18-240 (241)
14 PRK15068 tRNA mo(5)U34 methylt 98.7 1.1E-07 2.3E-12 93.4 9.8 150 58-288 123-276 (322)
15 PLN02233 ubiquinone biosynthes 98.7 1E-06 2.2E-11 83.9 16.2 164 57-286 73-248 (261)
16 PF13489 Methyltransf_23: Meth 98.6 1.3E-07 2.9E-12 81.4 9.0 138 56-283 21-160 (161)
17 PRK15451 tRNA cmo(5)U34 methyl 98.6 1.1E-06 2.4E-11 82.8 14.3 161 57-280 56-224 (247)
18 PRK11036 putative S-adenosyl-L 98.6 1E-06 2.2E-11 83.2 13.9 159 56-286 43-207 (255)
19 smart00828 PKS_MT Methyltransf 98.6 1.8E-06 3.9E-11 79.5 15.1 80 139-287 66-145 (224)
20 PRK11207 tellurite resistance 98.6 9.4E-07 2E-11 80.5 12.4 137 58-285 31-169 (197)
21 TIGR00452 methyltransferase, p 98.5 2.9E-06 6.3E-11 83.0 16.1 90 137-287 185-274 (314)
22 PRK11705 cyclopropane fatty ac 98.5 2.1E-05 4.5E-10 79.1 20.0 87 138-287 226-313 (383)
23 PF02353 CMAS: Mycolic acid cy 98.4 2.5E-05 5.4E-10 75.0 19.7 159 58-315 63-235 (273)
24 PLN02396 hexaprenyldihydroxybe 98.4 5.6E-06 1.2E-10 81.3 15.0 152 58-286 132-289 (322)
25 COG2226 UbiE Methylase involve 98.4 1.2E-06 2.5E-11 82.4 9.5 166 57-285 51-223 (238)
26 PF08241 Methyltransf_11: Meth 98.4 5.6E-07 1.2E-11 70.3 6.1 94 62-213 1-95 (95)
27 PRK12335 tellurite resistance 98.4 2.8E-06 6.2E-11 81.8 11.9 124 59-285 122-258 (287)
28 PRK00216 ubiE ubiquinone/menaq 98.3 6.3E-06 1.4E-10 75.8 12.0 162 58-287 52-226 (239)
29 TIGR00477 tehB tellurite resis 98.3 3.1E-06 6.6E-11 77.0 9.7 100 58-215 31-133 (195)
30 PF12847 Methyltransf_18: Meth 98.3 3.1E-06 6.8E-11 68.9 8.5 94 59-215 3-111 (112)
31 COG2230 Cfa Cyclopropane fatty 98.3 8.5E-05 1.8E-09 71.4 19.5 181 57-341 72-269 (283)
32 PLN02490 MPBQ/MSBQ methyltrans 98.3 8.2E-06 1.8E-10 80.7 12.3 145 57-287 113-257 (340)
33 PF01209 Ubie_methyltran: ubiE 98.3 4E-06 8.6E-11 78.7 9.6 166 56-285 46-219 (233)
34 PRK06202 hypothetical protein; 98.3 3.2E-05 6.8E-10 71.9 15.2 85 56-155 59-144 (232)
35 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 1.4E-05 3.1E-10 72.6 11.9 164 57-287 39-211 (223)
36 PRK11873 arsM arsenite S-adeno 98.2 2.7E-05 5.8E-10 74.1 13.1 150 57-286 77-230 (272)
37 PF13847 Methyltransf_31: Meth 98.1 8.7E-06 1.9E-10 70.6 7.3 107 57-217 3-112 (152)
38 PF03848 TehB: Tellurite resis 98.1 1.2E-05 2.7E-10 73.2 8.3 91 58-215 31-133 (192)
39 PRK00121 trmB tRNA (guanine-N( 98.0 2.1E-05 4.6E-10 71.9 8.1 160 26-250 14-176 (202)
40 PF08242 Methyltransf_12: Meth 98.0 7.5E-06 1.6E-10 65.6 4.5 96 62-211 1-99 (99)
41 TIGR02021 BchM-ChlM magnesium 98.0 0.00021 4.6E-09 65.7 14.7 29 258-287 179-207 (219)
42 TIGR00138 gidB 16S rRNA methyl 98.0 8.2E-05 1.8E-09 67.1 11.3 128 58-260 43-173 (181)
43 KOG1270 Methyltransferases [Co 97.9 3.4E-05 7.3E-10 73.0 8.5 141 59-285 91-248 (282)
44 TIGR02716 C20_methyl_CrtF C-20 97.9 0.00032 6.9E-09 68.0 15.5 151 56-282 148-302 (306)
45 PRK07580 Mg-protoporphyrin IX 97.9 0.00077 1.7E-08 61.9 17.2 29 259-288 188-216 (230)
46 KOG2940 Predicted methyltransf 97.9 6.6E-06 1.4E-10 76.4 2.9 139 58-284 73-225 (325)
47 TIGR02081 metW methionine bios 97.9 9.6E-05 2.1E-09 66.8 10.4 27 261-288 143-169 (194)
48 PRK06922 hypothetical protein; 97.9 4E-05 8.7E-10 81.1 8.3 114 58-214 419-536 (677)
49 PF05401 NodS: Nodulation prot 97.8 5.2E-05 1.1E-09 69.2 7.6 93 56-215 42-146 (201)
50 PRK05785 hypothetical protein; 97.8 0.00016 3.4E-09 67.5 11.0 74 58-155 52-125 (226)
51 smart00138 MeTrc Methyltransfe 97.8 0.00012 2.5E-09 70.0 9.9 115 56-214 98-241 (264)
52 PF13649 Methyltransf_25: Meth 97.8 4.7E-05 1E-09 61.4 6.0 98 61-209 1-101 (101)
53 KOG1541 Predicted protein carb 97.8 0.00021 4.5E-09 66.2 10.7 131 19-219 22-164 (270)
54 PRK11188 rrmJ 23S rRNA methylt 97.8 0.00034 7.3E-09 64.5 11.8 108 58-217 52-167 (209)
55 TIGR01983 UbiG ubiquinone bios 97.7 0.00033 7.2E-09 64.2 11.5 95 138-287 110-204 (224)
56 PLN02336 phosphoethanolamine N 97.7 6.5E-05 1.4E-09 77.2 6.9 102 58-214 38-141 (475)
57 PRK05134 bifunctional 3-demeth 97.7 0.00094 2E-08 61.8 13.9 96 137-287 111-206 (233)
58 TIGR00091 tRNA (guanine-N(7)-) 97.7 0.0005 1.1E-08 62.4 11.2 102 58-215 17-132 (194)
59 TIGR03438 probable methyltrans 97.6 0.00028 6E-09 68.6 9.7 112 58-220 64-182 (301)
60 KOG1540 Ubiquinone biosynthesi 97.6 0.00011 2.5E-09 69.3 6.6 172 55-285 98-281 (296)
61 TIGR02469 CbiT precorrin-6Y C5 97.6 0.001 2.2E-08 54.6 11.3 22 194-215 101-122 (124)
62 COG4123 Predicted O-methyltran 97.5 0.00048 1E-08 65.2 9.4 114 56-215 43-170 (248)
63 KOG3010 Methyltransferase [Gen 97.5 0.0017 3.6E-08 61.0 12.2 46 137-221 97-142 (261)
64 PLN02585 magnesium protoporphy 97.5 0.0032 6.8E-08 61.8 14.6 27 261-288 275-301 (315)
65 PRK11088 rrmA 23S rRNA methylt 97.5 0.00039 8.5E-09 66.3 8.1 76 57-149 85-160 (272)
66 PLN02232 ubiquinone biosynthes 97.4 0.00079 1.7E-08 59.3 9.0 48 135-220 39-86 (160)
67 PRK08287 cobalt-precorrin-6Y C 97.4 0.0015 3.3E-08 58.5 11.1 21 57-77 31-51 (187)
68 PRK00107 gidB 16S rRNA methylt 97.4 0.0014 3E-08 59.6 10.6 22 194-215 124-145 (187)
69 PF05175 MTS: Methyltransferas 97.4 0.0019 4.1E-08 57.3 11.0 107 58-215 32-140 (170)
70 TIGR03840 TMPT_Se_Te thiopurin 97.4 0.0035 7.5E-08 58.1 13.1 59 194-288 131-189 (213)
71 PRK13942 protein-L-isoaspartat 97.4 0.00087 1.9E-08 61.8 9.0 21 57-77 76-96 (212)
72 PRK13944 protein-L-isoaspartat 97.4 0.0012 2.5E-08 60.5 9.7 20 58-77 73-92 (205)
73 PF00891 Methyltransf_2: O-met 97.4 0.0025 5.4E-08 59.4 12.1 103 56-219 99-203 (241)
74 TIGR03587 Pse_Me-ase pseudamin 97.4 0.0018 3.9E-08 59.5 10.7 76 57-154 43-119 (204)
75 TIGR00537 hemK_rel_arch HemK-r 97.3 0.0015 3.2E-08 58.3 9.6 122 59-218 21-143 (179)
76 PRK13255 thiopurine S-methyltr 97.3 0.0044 9.5E-08 57.6 12.9 58 194-287 134-191 (218)
77 cd02440 AdoMet_MTases S-adenos 97.3 0.00087 1.9E-08 51.5 7.0 99 60-214 1-103 (107)
78 TIGR00080 pimt protein-L-isoas 97.3 0.0015 3.2E-08 60.2 9.7 21 57-77 77-97 (215)
79 KOG2361 Predicted methyltransf 97.3 0.00099 2.1E-08 62.5 8.3 196 20-287 31-238 (264)
80 PRK14121 tRNA (guanine-N(7)-)- 97.3 0.0013 2.9E-08 66.1 9.6 99 58-215 123-235 (390)
81 PRK04266 fibrillarin; Provisio 97.3 0.0032 6.9E-08 58.9 11.6 20 58-77 73-92 (226)
82 PRK15001 SAM-dependent 23S rib 97.3 0.0015 3.2E-08 65.6 9.9 105 59-215 230-340 (378)
83 PRK09489 rsmC 16S ribosomal RN 97.2 0.0015 3.2E-08 64.8 8.9 106 59-215 198-303 (342)
84 PRK00312 pcm protein-L-isoaspa 97.2 0.00089 1.9E-08 61.3 6.8 20 56-75 77-96 (212)
85 PTZ00146 fibrillarin; Provisio 97.2 0.0026 5.6E-08 61.7 10.2 20 58-77 133-152 (293)
86 PF08003 Methyltransf_9: Prote 97.2 0.0024 5.1E-08 62.1 9.6 147 57-284 115-265 (315)
87 TIGR03533 L3_gln_methyl protei 97.1 0.0046 9.9E-08 59.7 11.4 23 194-216 230-252 (284)
88 TIGR00438 rrmJ cell division p 97.1 0.0027 5.7E-08 57.1 8.9 23 193-215 124-146 (188)
89 PRK14967 putative methyltransf 97.1 0.0068 1.5E-07 56.1 11.8 165 58-277 37-204 (223)
90 PF07021 MetW: Methionine bios 97.0 0.0034 7.5E-08 57.1 8.4 94 135-288 70-169 (193)
91 PF05148 Methyltransf_8: Hypot 96.9 0.001 2.2E-08 61.3 4.1 86 56-214 71-157 (219)
92 PF13659 Methyltransf_26: Meth 96.9 0.0044 9.5E-08 50.6 7.5 102 59-216 2-116 (117)
93 COG2242 CobL Precorrin-6B meth 96.9 0.014 3E-07 53.0 11.0 49 56-106 33-95 (187)
94 TIGR00406 prmA ribosomal prote 96.8 0.0063 1.4E-07 58.7 9.5 18 58-75 160-177 (288)
95 TIGR03534 RF_mod_PrmC protein- 96.7 0.0048 1.1E-07 57.3 7.4 126 57-215 87-217 (251)
96 PRK11805 N5-glutamine S-adenos 96.7 0.02 4.3E-07 56.0 11.9 22 195-216 243-264 (307)
97 PRK00811 spermidine synthase; 96.7 0.011 2.3E-07 57.1 9.7 22 56-77 75-96 (283)
98 PRK14968 putative methyltransf 96.7 0.024 5.2E-07 50.1 11.2 23 194-216 127-149 (188)
99 KOG3045 Predicted RNA methylas 96.7 0.0024 5.1E-08 60.6 4.7 42 134-214 222-263 (325)
100 PF03141 Methyltransf_29: Puta 96.5 0.0021 4.5E-08 66.0 3.4 80 55-155 115-197 (506)
101 COG2518 Pcm Protein-L-isoaspar 96.5 0.015 3.2E-07 53.7 8.5 49 141-216 122-170 (209)
102 PLN03075 nicotianamine synthas 96.4 0.036 7.9E-07 53.9 11.5 104 57-215 123-233 (296)
103 PF03291 Pox_MCEL: mRNA cappin 96.4 0.0089 1.9E-07 59.1 7.4 44 139-216 144-187 (331)
104 PF05891 Methyltransf_PK: AdoM 96.3 0.014 2.9E-07 54.3 7.6 134 56-287 54-202 (218)
105 COG2227 UbiG 2-polyprenyl-3-me 96.3 0.008 1.7E-07 56.5 6.1 90 139-285 123-214 (243)
106 TIGR00536 hemK_fam HemK family 96.3 0.047 1E-06 52.5 11.5 24 193-216 222-245 (284)
107 PRK09328 N5-glutamine S-adenos 96.3 0.032 6.9E-07 52.7 10.1 24 192-215 215-238 (275)
108 PRK00517 prmA ribosomal protei 96.3 0.02 4.3E-07 54.0 8.6 19 197-215 195-213 (250)
109 PHA03411 putative methyltransf 96.3 0.023 5E-07 54.7 9.0 121 58-219 65-187 (279)
110 PF06080 DUF938: Protein of un 96.2 0.076 1.6E-06 49.0 11.7 170 32-285 8-191 (204)
111 PRK10901 16S rRNA methyltransf 96.1 0.05 1.1E-06 55.5 11.1 26 191-216 348-373 (427)
112 PRK00377 cbiT cobalt-precorrin 96.1 0.1 2.2E-06 47.3 11.9 20 57-76 40-59 (198)
113 PF01135 PCMT: Protein-L-isoas 95.9 0.026 5.7E-07 52.2 7.3 20 58-77 73-92 (209)
114 PRK14904 16S rRNA methyltransf 95.8 0.096 2.1E-06 53.7 11.6 123 58-218 251-380 (445)
115 KOG3178 Hydroxyindole-O-methyl 95.8 0.14 3E-06 50.6 12.1 150 56-286 176-330 (342)
116 PRK14902 16S rRNA methyltransf 95.7 0.072 1.6E-06 54.5 10.4 124 58-216 251-380 (444)
117 PRK01544 bifunctional N5-gluta 95.5 0.071 1.5E-06 55.7 9.6 123 58-215 139-269 (506)
118 PRK14966 unknown domain/N5-glu 95.5 0.13 2.9E-06 52.3 11.1 22 194-215 360-381 (423)
119 PRK14903 16S rRNA methyltransf 95.5 0.08 1.7E-06 54.2 9.6 63 138-219 305-370 (431)
120 PRK04457 spermidine synthase; 95.5 0.055 1.2E-06 51.6 7.9 25 195-219 157-181 (262)
121 TIGR01177 conserved hypothetic 95.4 0.19 4.2E-06 49.3 11.9 25 194-218 273-297 (329)
122 KOG4300 Predicted methyltransf 95.4 0.083 1.8E-06 48.9 8.4 108 122-290 129-236 (252)
123 KOG2904 Predicted methyltransf 95.4 0.3 6.5E-06 47.1 12.4 120 59-221 150-291 (328)
124 PRK07402 precorrin-6B methylas 95.3 0.21 4.5E-06 45.1 10.9 23 194-216 121-143 (196)
125 TIGR00417 speE spermidine synt 95.2 0.15 3.2E-06 48.7 10.1 20 195-214 166-185 (270)
126 PRK13943 protein-L-isoaspartat 95.2 0.088 1.9E-06 51.9 8.4 20 58-77 81-100 (322)
127 PRK03612 spermidine synthase; 95.0 0.27 5.9E-06 51.5 11.9 62 196-274 396-457 (521)
128 TIGR00563 rsmB ribosomal RNA s 94.8 0.21 4.6E-06 50.9 10.5 127 58-218 239-371 (426)
129 COG2813 RsmC 16S RNA G1207 met 94.8 0.14 3E-06 49.8 8.5 100 60-216 161-267 (300)
130 KOG1975 mRNA cap methyltransfe 94.6 0.1 2.3E-06 51.2 7.0 112 57-217 117-239 (389)
131 PRK14901 16S rRNA methyltransf 94.4 0.34 7.4E-06 49.5 10.8 28 190-217 359-386 (434)
132 PF02390 Methyltransf_4: Putat 94.3 0.13 2.7E-06 47.0 6.8 111 60-215 20-133 (195)
133 TIGR00446 nop2p NOL1/NOP2/sun 94.2 0.29 6.4E-06 46.6 9.3 28 190-217 174-201 (264)
134 COG2264 PrmA Ribosomal protein 94.2 0.04 8.7E-07 53.6 3.3 22 56-77 161-182 (300)
135 smart00650 rADc Ribosomal RNA 94.1 0.09 1.9E-06 46.4 5.1 20 58-77 14-33 (169)
136 KOG2899 Predicted methyltransf 93.7 0.3 6.6E-06 46.2 8.0 45 138-214 164-208 (288)
137 TIGR03704 PrmC_rel_meth putati 93.5 0.33 7.2E-06 45.9 8.2 22 194-215 195-216 (251)
138 KOG1331 Predicted methyltransf 93.4 0.099 2.1E-06 50.4 4.3 56 133-223 96-151 (293)
139 PLN02366 spermidine synthase 93.3 0.32 6.9E-06 47.6 8.0 110 56-215 90-206 (308)
140 PF12147 Methyltransf_20: Puta 92.9 4.5 9.8E-05 39.4 14.8 60 197-280 231-292 (311)
141 PRK01581 speE spermidine synth 92.7 0.2 4.3E-06 50.2 5.5 20 195-214 248-267 (374)
142 PRK11783 rlmL 23S rRNA m(2)G24 92.7 0.53 1.1E-05 51.2 9.3 19 59-77 540-558 (702)
143 PF06325 PrmA: Ribosomal prote 92.4 0.11 2.4E-06 50.5 3.3 19 59-77 163-181 (295)
144 PRK01544 bifunctional N5-gluta 92.4 0.77 1.7E-05 48.0 9.7 138 25-215 323-462 (506)
145 PLN02672 methionine S-methyltr 91.6 0.92 2E-05 51.5 9.7 25 195-219 258-282 (1082)
146 KOG1499 Protein arginine N-met 91.4 0.24 5.1E-06 49.1 4.3 93 57-212 60-164 (346)
147 COG0220 Predicted S-adenosylme 91.1 1.2 2.5E-05 41.9 8.4 101 59-215 50-164 (227)
148 PF08123 DOT1: Histone methyla 91.0 0.73 1.6E-05 42.5 6.9 22 192-213 135-156 (205)
149 PLN02781 Probable caffeoyl-CoA 89.8 1.6 3.5E-05 40.8 8.3 22 56-77 67-88 (234)
150 PRK15128 23S rRNA m(5)C1962 me 89.8 6.4 0.00014 39.9 13.1 27 189-215 313-339 (396)
151 COG2890 HemK Methylase of poly 89.6 1.4 2.9E-05 42.6 7.8 23 193-215 216-238 (280)
152 PF10294 Methyltransf_16: Puta 89.1 1.1 2.3E-05 40.0 6.2 110 56-220 44-161 (173)
153 COG4976 Predicted methyltransf 88.5 0.62 1.3E-05 44.0 4.3 63 194-287 204-266 (287)
154 PRK00274 ksgA 16S ribosomal RN 88.4 0.3 6.6E-06 46.7 2.3 49 58-111 43-103 (272)
155 KOG1500 Protein arginine N-met 88.2 2.9 6.4E-05 41.5 8.9 149 57-263 177-342 (517)
156 TIGR03439 methyl_EasF probable 88.0 5.2 0.00011 39.4 10.7 24 57-80 76-99 (319)
157 PHA03412 putative methyltransf 87.2 0.27 5.9E-06 46.5 1.2 63 58-124 50-126 (241)
158 KOG1271 Methyltransferases [Ge 87.0 5.1 0.00011 36.7 9.1 18 58-75 68-85 (227)
159 PF05185 PRMT5: PRMT5 arginine 86.0 2 4.3E-05 44.3 6.8 22 57-78 186-207 (448)
160 PF01234 NNMT_PNMT_TEMT: NNMT/ 85.1 1.1 2.4E-05 42.8 4.2 82 140-286 158-239 (256)
161 COG1352 CheR Methylase of chem 83.1 16 0.00035 35.1 11.2 113 57-214 96-240 (268)
162 PRK13256 thiopurine S-methyltr 80.3 29 0.00064 32.5 11.6 21 57-77 43-63 (226)
163 PF05724 TPMT: Thiopurine S-me 79.1 18 0.00038 33.6 9.7 27 260-288 166-192 (218)
164 PF06859 Bin3: Bicoid-interact 78.9 2.3 4.9E-05 35.4 3.3 43 141-215 2-44 (110)
165 TIGR00478 tly hemolysin TlyA f 77.9 2.5 5.4E-05 39.6 3.7 22 57-78 75-96 (228)
166 TIGR00755 ksgA dimethyladenosi 77.7 6.1 0.00013 37.1 6.3 21 57-77 29-49 (253)
167 PRK14896 ksgA 16S ribosomal RN 77.7 5.5 0.00012 37.6 6.1 20 58-77 30-49 (258)
168 PF07942 N2227: N2227-like pro 76.8 74 0.0016 30.7 13.6 40 35-77 37-76 (270)
169 PRK11727 23S rRNA mA1618 methy 76.8 6.6 0.00014 38.8 6.4 19 57-75 114-132 (321)
170 PLN02823 spermine synthase 76.3 10 0.00022 37.7 7.6 22 56-77 102-123 (336)
171 PF13679 Methyltransf_32: Meth 75.9 4.5 9.9E-05 34.5 4.5 22 56-77 24-45 (141)
172 PTZ00338 dimethyladenosine tra 75.4 3.5 7.6E-05 40.1 4.1 50 58-108 37-98 (294)
173 COG2263 Predicted RNA methylas 74.9 1.6 3.4E-05 39.9 1.4 50 57-111 45-107 (198)
174 PRK03522 rumB 23S rRNA methylu 74.8 3.6 7.9E-05 40.1 4.1 20 58-77 174-193 (315)
175 PRK04148 hypothetical protein; 74.6 8.2 0.00018 33.3 5.7 46 57-111 16-74 (134)
176 COG0030 KsgA Dimethyladenosine 72.5 15 0.00032 35.2 7.4 52 58-113 31-94 (259)
177 PF01728 FtsJ: FtsJ-like methy 69.8 4 8.8E-05 36.0 2.8 80 56-152 22-103 (181)
178 PRK10909 rsmD 16S rRNA m(2)G96 69.2 6.2 0.00013 36.1 4.0 19 59-77 55-73 (199)
179 PF11968 DUF3321: Putative met 69.2 18 0.00039 33.8 6.9 94 56-217 50-151 (219)
180 PF02384 N6_Mtase: N-6 DNA Met 67.8 15 0.00032 35.4 6.6 131 56-216 45-184 (311)
181 COG0500 SmtA SAM-dependent met 66.7 22 0.00047 27.6 6.3 25 197-221 137-161 (257)
182 PRK10611 chemotaxis methyltran 64.3 7 0.00015 37.9 3.5 42 57-105 115-156 (287)
183 PRK13168 rumA 23S rRNA m(5)U19 63.2 8.7 0.00019 39.4 4.1 20 58-77 298-317 (443)
184 TIGR00479 rumA 23S rRNA (uraci 62.9 22 0.00048 36.1 7.0 20 58-77 293-312 (431)
185 KOG3191 Predicted N6-DNA-methy 61.4 15 0.00032 33.7 4.6 39 34-80 28-66 (209)
186 PF07091 FmrO: Ribosomal RNA m 60.0 11 0.00024 35.9 3.8 49 55-106 103-165 (251)
187 COG1189 Predicted rRNA methyla 58.4 9.7 0.00021 36.1 3.1 23 56-78 78-100 (245)
188 PF05219 DREV: DREV methyltran 56.2 58 0.0013 31.3 8.0 21 57-77 94-114 (265)
189 PF09243 Rsm22: Mitochondrial 54.3 1.7E+02 0.0036 28.0 11.1 83 56-153 32-115 (274)
190 PRK11933 yebU rRNA (cytosine-C 53.5 45 0.00098 34.7 7.4 26 192-217 219-244 (470)
191 KOG4589 Cell division protein 53.2 15 0.00032 33.9 3.3 24 56-79 68-91 (232)
192 TIGR02085 meth_trns_rumB 23S r 52.7 15 0.00033 36.8 3.7 19 59-77 235-253 (374)
193 TIGR01444 fkbM_fam methyltrans 51.8 22 0.00047 29.6 4.1 18 60-77 1-18 (143)
194 PF00398 RrnaAD: Ribosomal RNA 51.2 73 0.0016 30.1 8.0 51 57-111 30-92 (262)
195 TIGR00095 RNA methyltransferas 47.9 11 0.00023 34.1 1.6 20 58-77 50-69 (189)
196 PRK00050 16S rRNA m(4)C1402 me 46.7 38 0.00083 33.0 5.4 25 192-216 213-237 (296)
197 KOG3115 Methyltransferase-like 46.5 9.7 0.00021 35.5 1.1 19 57-75 60-78 (249)
198 PRK11760 putative 23S rRNA C24 46.4 20 0.00043 35.9 3.3 22 56-77 210-231 (357)
199 COG5124 Protein predicted to b 46.0 13 0.00028 33.6 1.7 61 187-266 15-75 (209)
200 PRK05031 tRNA (uracil-5-)-meth 45.3 60 0.0013 32.4 6.6 44 59-104 208-263 (362)
201 PF03962 Mnd1: Mnd1 family; I 43.4 15 0.00033 33.4 1.9 35 233-267 29-63 (188)
202 cd08788 CARD_NOD2_2_CARD15 Cas 40.5 34 0.00073 26.9 3.1 43 232-275 12-54 (81)
203 PF02268 TFIIA_gamma_N: Transc 40.2 29 0.00063 24.7 2.5 19 234-252 13-31 (49)
204 PF09445 Methyltransf_15: RNA 39.6 15 0.00033 32.7 1.2 19 60-78 2-20 (163)
205 PF14904 FAM86: Family of unkn 39.5 32 0.00069 28.2 2.9 31 303-333 67-99 (100)
206 KOG1661 Protein-L-isoaspartate 39.0 27 0.00058 32.7 2.7 30 172-216 165-194 (237)
207 PRK11524 putative methyltransf 39.0 51 0.0011 31.5 4.9 22 194-215 59-80 (284)
208 PF01739 CheR: CheR methyltran 37.8 25 0.00053 32.1 2.3 114 56-214 30-174 (196)
209 TIGR02143 trmA_only tRNA (urac 36.9 37 0.00081 33.7 3.7 18 60-77 200-217 (353)
210 PF02375 JmjN: jmjN domain; I 36.6 14 0.00031 24.2 0.4 15 260-274 1-15 (34)
211 PF09851 SHOCT: Short C-termin 36.0 34 0.00074 21.7 2.1 17 239-255 7-23 (31)
212 TIGR00730 conserved hypothetic 35.2 63 0.0014 29.0 4.5 41 232-275 137-177 (178)
213 KOG3433 Protein involved in me 35.2 26 0.00056 31.9 1.9 37 230-266 38-74 (203)
214 PF07757 AdoMet_MTase: Predict 34.8 18 0.00038 30.2 0.8 21 56-76 57-77 (112)
215 TIGR00006 S-adenosyl-methyltra 34.6 80 0.0017 31.0 5.4 25 192-216 217-241 (305)
216 KOG3420 Predicted RNA methylas 31.7 15 0.00032 32.6 -0.2 19 57-75 48-66 (185)
217 smart00400 ZnF_CHCC zinc finge 31.3 39 0.00084 24.0 2.0 23 58-80 21-43 (55)
218 PRK04338 N(2),N(2)-dimethylgua 30.8 41 0.00089 34.0 2.8 49 15-77 29-77 (382)
219 COG2519 GCD14 tRNA(1-methylade 29.9 1.1E+02 0.0023 29.4 5.3 44 197-255 177-220 (256)
220 PF04816 DUF633: Family of unk 29.6 90 0.002 28.7 4.7 23 264-287 103-125 (205)
221 PF01795 Methyltransf_5: MraW 28.8 27 0.00059 34.3 1.1 25 192-216 218-242 (310)
222 TIGR02987 met_A_Alw26 type II 27.7 39 0.00085 35.3 2.2 23 57-79 31-53 (524)
223 PF09597 IGR: IGR protein moti 27.5 53 0.0011 24.1 2.2 27 184-210 13-39 (57)
224 PHA00457 inhibitor of host bac 27.1 64 0.0014 23.9 2.5 31 255-285 25-58 (63)
225 COG3963 Phospholipid N-methylt 26.0 2.1E+02 0.0045 26.1 6.1 75 57-147 48-124 (194)
226 PF13260 DUF4051: Protein of u 24.9 1.2E+02 0.0025 21.6 3.4 27 183-209 22-48 (54)
227 PRK10953 cysJ sulfite reductas 24.4 6.1E+02 0.013 27.2 10.5 111 194-330 468-589 (600)
228 smart00545 JmjN Small domain f 24.0 47 0.001 22.8 1.3 16 259-274 2-17 (42)
229 PF03641 Lysine_decarbox: Poss 23.8 95 0.0021 26.2 3.5 39 232-273 95-133 (133)
230 PF04672 Methyltransf_19: S-ad 23.6 2E+02 0.0043 27.8 5.9 54 203-281 178-231 (267)
231 COG4076 Predicted RNA methylas 23.2 67 0.0015 29.7 2.5 63 36-109 22-94 (252)
232 KOG2539 Mitochondrial/chloropl 22.9 1.7E+02 0.0037 30.6 5.5 103 126-278 256-365 (491)
233 COG0293 FtsJ 23S rRNA methylas 22.6 1.2E+02 0.0026 28.1 4.1 53 19-79 15-67 (205)
234 PF10357 Kin17_mid: Domain of 21.7 91 0.002 26.7 2.9 26 179-204 10-35 (127)
235 PRK13699 putative methylase; P 21.3 2.3E+02 0.0049 26.3 5.7 21 195-215 52-72 (227)
236 KOG0820 Ribosomal RNA adenine 21.0 2.8E+02 0.0061 27.2 6.3 52 56-108 57-120 (315)
237 KOG4068 Uncharacterized conser 20.9 1.1E+02 0.0024 27.2 3.3 41 234-274 69-109 (174)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=9.8e-102 Score=762.81 Aligned_cols=347 Identities=32% Similarity=0.523 Sum_probs=314.1
Q ss_pred CcceeeccCCCCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHH
Q 018119 5 SVSSQAMMGGDGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVK 84 (360)
Q Consensus 5 ~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~ 84 (360)
..++|||+||+|++||++||.+|+.++..++|+|+++|+++. .+.. +.++++|||||||+|+||+.+|+.||++|+
T Consensus 15 ~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~-~~~~---p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~ 90 (386)
T PLN02668 15 LEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVH-LNSS---PEVPFTAVDLGCSSGSNTIHIIDVIVKHMS 90 (386)
T ss_pred eccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccC---CCcceeEEEecCCCCccHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998853 2211 236899999999999999999999999999
Q ss_pred HHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC----------------CcceEeecCCccccccCCCCceeEEEecc
Q 018119 85 LKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD----------------RQYYAAGVPGSFHNRLFPKASINFFHCSY 148 (360)
Q Consensus 85 ~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~----------------~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~ 148 (360)
++|++.+.++|||||||||||+||||+||++||+. ++||++|||||||+||||++|+||+||++
T Consensus 91 ~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~ 170 (386)
T PLN02668 91 KRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAF 170 (386)
T ss_pred HHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeec
Confidence 99998777789999999999999999999999852 24999999999999999999999999999
Q ss_pred cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCc
Q 018119 149 GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECS 228 (360)
Q Consensus 149 alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~ 228 (360)
||||||++|+.+.|+.+++||||+|||++++|+|.+||++||++||..||++||+||+|||+||++++||++.++..+..
T Consensus 171 slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~ 250 (386)
T PLN02668 171 SLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGG 250 (386)
T ss_pred cceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877765544
Q ss_pred hhhHHHH-HHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccch--hhhcC----CChhH
Q 018119 229 VLASADL-LGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSA--QRQLA----TNTPT 301 (360)
Q Consensus 229 ~~~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~--~~~~~----~~~~~ 301 (360)
.+.+|+. +.++|+|||.||+|++||+|+||+|+|+||++|++++|+++|+|+|+++|+++... +.+.+ ..++.
T Consensus 251 ~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g~~ 330 (386)
T PLN02668 251 AGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVGRA 330 (386)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHHHH
Confidence 6677877 99999999999999999999999999999999999999999999999999986421 11111 23568
Q ss_pred HHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHHhcchhhccccCCCcEEEEEEEE
Q 018119 302 VVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILK 357 (360)
Q Consensus 302 ~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 357 (360)
+++++||++||+|++|||++|+|+||+||+++++++++.. .++.++++++++|.
T Consensus 331 ~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~--~~~~~~~~~~~sL~ 384 (386)
T PLN02668 331 MANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKEL--LEKLQFFHIVASLS 384 (386)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh--cccCceEEEEEEEe
Confidence 9999999999999999999999999999999999998864 25678888888885
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.4e-95 Score=713.89 Aligned_cols=316 Identities=45% Similarity=0.726 Sum_probs=264.7
Q ss_pred HHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcC-CCCccceEEecCCCCCchHHHHhhC
Q 018119 38 INRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYG-HDKLEFQVFFNDLVSNDFNALYKSL 116 (360)
Q Consensus 38 l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~-~~~p~~~v~~nDlp~NDFn~lF~~l 116 (360)
|++||++++... . .+++++|||||||+|+||+.+|+.||++|+++|++.+ +++|+|||||||||+||||+||++|
T Consensus 1 ~~~ai~~~~~~~-~---~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l 76 (334)
T PF03492_consen 1 LEEAIKELYNSS-N---NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSL 76 (334)
T ss_dssp -HHHHHHHHHST-T---TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCH
T ss_pred ChHHHHHHHhcC-C---CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhC
Confidence 578999876422 2 5889999999999999999999999999999999876 6789999999999999999999999
Q ss_pred CCC-------CcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeec-CCCHHHHHHHHH
Q 018119 117 PSD-------RQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYS-RGPNEVVEAYSA 188 (360)
Q Consensus 117 ~~~-------~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~-~~~~~v~~ay~~ 188 (360)
|+. ++||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||++ +++++|.+||++
T Consensus 77 ~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~ 156 (334)
T PF03492_consen 77 PSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAK 156 (334)
T ss_dssp HHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHH
T ss_pred hhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHH
Confidence 975 799999999999999999999999999999999999999999999999999999999 688899999999
Q ss_pred HHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHH
Q 018119 189 ESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQE 268 (360)
Q Consensus 189 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE 268 (360)
||++||.+||++||+||+|||+||++++||++.++.. .+.+.+|++|+++|+|||.||+|++|++|+||+|+|+||.+|
T Consensus 157 Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~-~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eE 235 (334)
T PF03492_consen 157 QFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSS-TGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEE 235 (334)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTS-TTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHH
T ss_pred HHHHHHHHHHHHhhheeccCcEEEEEEeecccccccc-CCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHH
Confidence 9999999999999999999999999999999965543 345678999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeEEEEEEeccchhhh---------cCCChhHHHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHHhcch
Q 018119 269 LKALLKRNASFSIEKFEPLALSAQRQ---------LATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDESSV 339 (360)
Q Consensus 269 ~~~~ie~~g~F~I~~~e~~~~~~~~~---------~~~~~~~~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~~~~~ 339 (360)
++++|+++|+|+|+++|.++...+.. ....++.+++++||++||+|++|||++|+|+||+||+++++++++
T Consensus 236 v~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~ 315 (334)
T PF03492_consen 236 VRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLE 315 (334)
T ss_dssp HHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986432211 113578999999999999999999999999999999999999998
Q ss_pred hhccccCCCcEEEEEEEEec
Q 018119 340 YSQTSVYKPLVENVIILKHN 359 (360)
Q Consensus 340 ~~~~~~~~~~~~~~~~L~r~ 359 (360)
.. +...+++++++++|+||
T Consensus 316 ~~-~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 316 KE-KSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HT-HTT-BEEEEEEEEEEE-
T ss_pred Hh-hccCCCcEEEEEEEeeC
Confidence 75 33568899999999997
No 3
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=9.9e-12 Score=117.14 Aligned_cols=250 Identities=14% Similarity=0.173 Sum_probs=146.2
Q ss_pred CCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCc
Q 018119 16 GQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKL 95 (360)
Q Consensus 16 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p 95 (360)
....|.+++..|.+..... + .. +. .....+|+|+|||+|..+..+.+. .|
T Consensus 5 ~~~~Y~~~~~~~~~~~~~l---l----~~-~~-------~~~~~~vLDiGcG~G~~~~~la~~---------------~~ 54 (258)
T PRK01683 5 NPSLYLKFEDERTRPARDL---L----AR-VP-------LENPRYVVDLGCGPGNSTELLVER---------------WP 54 (258)
T ss_pred CHHHHHHHHHHhhcHHHHH---H----hh-CC-------CcCCCEEEEEcccCCHHHHHHHHH---------------CC
Confidence 3457999998887665432 2 11 11 133579999999999988765332 13
Q ss_pred cceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceee
Q 018119 96 EFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYY 175 (360)
Q Consensus 96 ~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~ 175 (360)
.-+|+-.|+.. +.-...+...+ +--|..+. +. .+.|++++|+++|+.++||+..
T Consensus 55 ~~~v~gvD~s~-~~i~~a~~~~~-~~~~~~~d---~~-~~~~~~~fD~v~~~~~l~~~~d-------------------- 108 (258)
T PRK01683 55 AARITGIDSSP-AMLAEARSRLP-DCQFVEAD---IA-SWQPPQALDLIFANASLQWLPD-------------------- 108 (258)
T ss_pred CCEEEEEECCH-HHHHHHHHhCC-CCeEEECc---hh-ccCCCCCccEEEEccChhhCCC--------------------
Confidence 35677777643 22222222111 11133332 22 3457789999999999999643
Q ss_pred cCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhc
Q 018119 176 SRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVD 255 (360)
Q Consensus 176 ~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d 255 (360)
...+|+.-.+-|+|||.+++.+.+.... ..+. .++++.....-. ..+.
T Consensus 109 ------------------~~~~l~~~~~~LkpgG~~~~~~~~~~~~---------~~~~----~~~~~~~~~~w~-~~~~ 156 (258)
T PRK01683 109 ------------------HLELFPRLVSLLAPGGVLAVQMPDNLDE---------PSHV----LMREVAENGPWE-QNLP 156 (258)
T ss_pred ------------------HHHHHHHHHHhcCCCcEEEEECCCCCCC---------HHHH----HHHHHHccCchH-HHhc
Confidence 2335667778999999999986442211 0111 122222211110 1111
Q ss_pred -ccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhh-hHHHHhhhchhHHHHHHHHHHHH
Q 018119 256 -SFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANL-EILVKEHFGNGIIEDLFDRFSKK 333 (360)
Q Consensus 256 -~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~-e~~l~~hfg~~i~delf~r~~~~ 333 (360)
.-..+.+.|+.+++...+...| +.++..+... ...+ .+.+.+..|+++.. .+++ .+++++..+++.+.|.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~f~~~~~~~ 230 (258)
T PRK01683 157 DRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTY-YHPM---PSAQAIVEWVKGTGLRPFL-DPLTESEQAAFLAAYLAR 230 (258)
T ss_pred cccccCcCCCCHHHHHHHHHhCC-Cceeeeeeee-eeec---CCchhhhhhhhhccHHHHH-hhCCHHHHHHHHHHHHHH
Confidence 1112456789999999999987 5665544321 1222 23567888999764 5665 689999999999999999
Q ss_pred HHhcchhhccc-cCCCcEEEEEEEEec
Q 018119 334 IDESSVYSQTS-VYKPLVENVIILKHN 359 (360)
Q Consensus 334 ~~~~~~~~~~~-~~~~~~~~~~~L~r~ 359 (360)
+.+....-.+. -...+.-++++-+|+
T Consensus 231 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (258)
T PRK01683 231 IAEAYPLQADGKVLLAFPRLFIVARRK 257 (258)
T ss_pred HHHHCCCCCCCcEEcccceEEEEEEec
Confidence 98773210011 123455566666664
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=8.8e-12 Score=117.65 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=137.1
Q ss_pred CchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCcc
Q 018119 17 QYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLE 96 (360)
Q Consensus 17 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~ 96 (360)
...|.+++..|.+.....+.. +. .....+|+|+|||+|..+..+.. + .|.
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~--------l~-------~~~~~~vLDlGcG~G~~~~~l~~--------~-------~p~ 53 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLAR--------VG-------AERARRVVDLGCGPGNLTRYLAR--------R-------WPG 53 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHh--------CC-------CCCCCEEEEEcCCCCHHHHHHHH--------H-------CCC
Confidence 357999999998766532222 11 13457999999999977664422 1 133
Q ss_pred ceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeec
Q 018119 97 FQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYS 176 (360)
Q Consensus 97 ~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~ 176 (360)
.+|+-.|+- -+.-...+.- .--|.. +.+ ..+.|.+++|+|+|+.++||+..
T Consensus 54 ~~v~gvD~s-~~~~~~a~~~---~~~~~~---~d~-~~~~~~~~fD~v~~~~~l~~~~d--------------------- 104 (255)
T PRK14103 54 AVIEALDSS-PEMVAAARER---GVDART---GDV-RDWKPKPDTDVVVSNAALQWVPE--------------------- 104 (255)
T ss_pred CEEEEEECC-HHHHHHHHhc---CCcEEE---cCh-hhCCCCCCceEEEEehhhhhCCC---------------------
Confidence 567777763 2333333221 112333 233 34567789999999999999643
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhh-hc
Q 018119 177 RGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQ-VD 255 (360)
Q Consensus 177 ~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~-~d 255 (360)
...+|+.-++-|+|||++++.+.+.... + .+.. +..+..++-....- -.
T Consensus 105 -----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~--------~~~~----~~~~~~~~~w~~~~~~~ 154 (255)
T PRK14103 105 -----------------HADLLVRWVDELAPGSWIAVQVPGNFDA-P--------SHAA----VRALARREPWAKLLRDI 154 (255)
T ss_pred -----------------HHHHHHHHHHhCCCCcEEEEEcCCCcCC-h--------hHHH----HHHHhccCchhHHhccc
Confidence 2234555568899999999987653211 1 1111 11222111110000 01
Q ss_pred ccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhh-hHHHHhhhchhHHHHHHHHHHHHH
Q 018119 256 SFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANL-EILVKEHFGNGIIEDLFDRFSKKI 334 (360)
Q Consensus 256 ~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~-e~~l~~hfg~~i~delf~r~~~~~ 334 (360)
.+..+.++.+.+++..++++.| |++...+..... .. .....+..|+++.. .++++ .++++..+++-+.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l 228 (255)
T PRK14103 155 PFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH-QL---TGEDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLL 228 (255)
T ss_pred ccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee-eC---CCchhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHH
Confidence 1233456789999999999996 987665542211 11 13456888888654 56665 899888899999999988
Q ss_pred Hhcc
Q 018119 335 DESS 338 (360)
Q Consensus 335 ~~~~ 338 (360)
++..
T Consensus 229 ~~~~ 232 (255)
T PRK14103 229 REAY 232 (255)
T ss_pred HHHC
Confidence 8764
No 5
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.25 E-value=3.5e-10 Score=103.94 Aligned_cols=216 Identities=18% Similarity=0.241 Sum_probs=136.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccc
Q 018119 18 YSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEF 97 (360)
Q Consensus 18 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~ 97 (360)
.+|.+.+..|+.......+.+... . ..++.+|+|+|||+|..+..+.... |..
T Consensus 7 ~~y~~~~~~q~~~~~~l~~~~~~~-------~-----~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~ 59 (240)
T TIGR02072 7 KTYDRHAKIQREMAKRLLALLKEK-------G-----IFIPASVLDIGCGTGYLTRALLKRF---------------PQA 59 (240)
T ss_pred hchhHHHHHHHHHHHHHHHHhhhh-------c-----cCCCCeEEEECCCccHHHHHHHHhC---------------CCC
Confidence 479999999988777655554311 0 1335789999999998776553321 346
Q ss_pred eEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecC
Q 018119 98 QVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSR 177 (360)
Q Consensus 98 ~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~ 177 (360)
++...|......+..-+.+++ +-.|+. +++....+|++++|+++++.++||+..
T Consensus 60 ~~~~~D~~~~~~~~~~~~~~~-~~~~~~---~d~~~~~~~~~~fD~vi~~~~l~~~~~---------------------- 113 (240)
T TIGR02072 60 EFIALDISAGMLAQAKTKLSE-NVQFIC---GDAEKLPLEDSSFDLIVSNLALQWCDD---------------------- 113 (240)
T ss_pred cEEEEeChHHHHHHHHHhcCC-CCeEEe---cchhhCCCCCCceeEEEEhhhhhhccC----------------------
Confidence 678888765444444444432 212333 345666788999999999999999633
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhccc
Q 018119 178 GPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSF 257 (360)
Q Consensus 178 ~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f 257 (360)
...+|+...+-|+|||.+++..++.... ..+..++..
T Consensus 114 ----------------~~~~l~~~~~~L~~~G~l~~~~~~~~~~------------~~~~~~~~~--------------- 150 (240)
T TIGR02072 114 ----------------LSQALSELARVLKPGGLLAFSTFGPGTL------------HELRQSFGQ--------------- 150 (240)
T ss_pred ----------------HHHHHHHHHHHcCCCcEEEEEeCCccCH------------HHHHHHHHH---------------
Confidence 3457888889999999999986544321 222222221
Q ss_pred CCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhhhHHHH-hhhchhHHHHHHHHHHHHHH
Q 018119 258 NLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVK-EHFGNGIIEDLFDRFSKKID 335 (360)
Q Consensus 258 ~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~-~hfg~~i~delf~r~~~~~~ 335 (360)
....+++.+++.+++... |.+..++.......+ .+...+..++|........ ..++.+...++.+.|.+...
T Consensus 151 -~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (240)
T TIGR02072 151 -HGLRYLSLDELKALLKNS--FELLTLEEELITLSF---DDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ 223 (240)
T ss_pred -hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeC---CCHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc
Confidence 112367899999998875 776555433212222 2456678888876653332 23566667777777766554
No 6
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.12 E-value=2.4e-09 Score=100.61 Aligned_cols=207 Identities=15% Similarity=0.200 Sum_probs=121.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccce
Q 018119 19 SYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQ 98 (360)
Q Consensus 19 sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~ 98 (360)
.|.+++..|+.+.......+ . ....-+|+|+|||+|.+|..+. .. ..+
T Consensus 19 ~Y~~~~~~q~~~a~~l~~~l--------~-------~~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~ 66 (251)
T PRK10258 19 HYEQHAELQRQSADALLAML--------P-------QRKFTHVLDAGCGPGWMSRYWR--------ER---------GSQ 66 (251)
T ss_pred hHhHHHHHHHHHHHHHHHhc--------C-------ccCCCeEEEeeCCCCHHHHHHH--------Hc---------CCe
Confidence 68888888887766433322 1 1234679999999998765441 11 146
Q ss_pred EEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCC
Q 018119 99 VFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRG 178 (360)
Q Consensus 99 v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~ 178 (360)
|+-.|+.. +.-...+.... ...|..+ .+..-.+|++++|+|+|+.++||+..
T Consensus 67 v~~~D~s~-~~l~~a~~~~~-~~~~~~~---d~~~~~~~~~~fD~V~s~~~l~~~~d----------------------- 118 (251)
T PRK10258 67 VTALDLSP-PMLAQARQKDA-ADHYLAG---DIESLPLATATFDLAWSNLAVQWCGN----------------------- 118 (251)
T ss_pred EEEEECCH-HHHHHHHhhCC-CCCEEEc---CcccCcCCCCcEEEEEECchhhhcCC-----------------------
Confidence 67777632 11111221111 1124333 34444578899999999999999544
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccC
Q 018119 179 PNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFN 258 (360)
Q Consensus 179 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~ 258 (360)
...+|+.-.+-|+|||.+++..++.++. .-+.++|..+-.. .
T Consensus 119 ---------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~------------~el~~~~~~~~~~-----------~ 160 (251)
T PRK10258 119 ---------------LSTALRELYRVVRPGGVVAFTTLVQGSL------------PELHQAWQAVDER-----------P 160 (251)
T ss_pred ---------------HHHHHHHHHHHcCCCeEEEEEeCCCCch------------HHHHHHHHHhccC-----------C
Confidence 3345666678999999999998876532 3345555432111 1
Q ss_pred CCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhhhHHHH-----hhhchhHHHHHHHHH
Q 018119 259 LPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVK-----EHFGNGIIEDLFDRF 330 (360)
Q Consensus 259 ~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~-----~hfg~~i~delf~r~ 330 (360)
...-+++.+|+...+...+ +.+ ..+.+ ...+ .++..+...+|......+. ..++...+.++.+.|
T Consensus 161 ~~~~~~~~~~l~~~l~~~~-~~~-~~~~~--~~~f---~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (251)
T PRK10258 161 HANRFLPPDAIEQALNGWR-YQH-HIQPI--TLWF---DDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAW 230 (251)
T ss_pred ccccCCCHHHHHHHHHhCC-cee-eeeEE--EEEC---CCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhc
Confidence 1223678999999998653 543 22222 1122 2566788888888765432 234444444444444
No 7
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.98 E-value=5.8e-09 Score=95.62 Aligned_cols=212 Identities=18% Similarity=0.241 Sum_probs=129.6
Q ss_pred CceeEEeeecCCCCCccHHHHH-----------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ-----------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA 124 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~-----------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~ 124 (360)
..+-+|.|||||.|.-|-++.+ .-.++|.+.-. ..|..++.-.|+-
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~----rlp~~~f~~aDl~------------------- 85 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ----RLPDATFEEADLR------------------- 85 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH----hCCCCceecccHh-------------------
Confidence 4478999999999999999877 12233333211 1355666666663
Q ss_pred eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119 125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE 204 (360)
Q Consensus 125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E 204 (360)
..-|+...|++||+++||||...|.. |..=-.+
T Consensus 86 ---------~w~p~~~~dllfaNAvlqWlpdH~~l--------------------------------------l~rL~~~ 118 (257)
T COG4106 86 ---------TWKPEQPTDLLFANAVLQWLPDHPEL--------------------------------------LPRLVSQ 118 (257)
T ss_pred ---------hcCCCCccchhhhhhhhhhccccHHH--------------------------------------HHHHHHh
Confidence 35688899999999999996664432 2222378
Q ss_pred hccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCC-CcccCCHHHHHHHHHhCCceeEEE
Q 018119 205 LASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNL-PSYFPTPQELKALLKRNASFSIEK 283 (360)
Q Consensus 205 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~-P~y~ps~eE~~~~ie~~g~F~I~~ 283 (360)
|.|||.|-+.|++--++ . .+.++.+. ++++ --+.++.++.+ =---|++.-|-+++...+ =+|.-
T Consensus 119 L~Pgg~LAVQmPdN~de--p-------sH~~mr~~----A~~~-p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDi 183 (257)
T COG4106 119 LAPGGVLAVQMPDNLDE--P-------SHRLMRET----ADEA-PFAQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDI 183 (257)
T ss_pred hCCCceEEEECCCccCc--h-------hHHHHHHH----HhcC-chhhhhCccccccCCCCCHHHHHHHhCccc-ceeee
Confidence 99999999999764433 1 12333333 2222 11112221111 111367888888887653 33333
Q ss_pred EE--EeccchhhhcCCChhHHHHHHHHhhh-HHHHhhhchhHHHHHHHHHHHHHHhcchhhccc-cCCCcEEEEEEEEec
Q 018119 284 FE--PLALSAQRQLATNTPTVVSHLRANLE-ILVKEHFGNGIIEDLFDRFSKKIDESSVYSQTS-VYKPLVENVIILKHN 359 (360)
Q Consensus 284 ~e--~~~~~~~~~~~~~~~~~~~~iRA~~e-~~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~-~~~~~~~~~~~L~r~ 359 (360)
-+ ..++- .+.+.+..|+++..- |.+. .++++-...|.++|..+++++.....+. .-..+--+|||-+|+
T Consensus 184 W~T~Y~h~l------~~a~aIvdWvkgTgLrP~L~-~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~~ 256 (257)
T COG4106 184 WHTTYYHQL------PGADAIVDWVKGTGLRPYLD-RLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATRG 256 (257)
T ss_pred eeeeccccC------CCccchhhheeccccceecc-ccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEecC
Confidence 33 22211 145789999997665 7775 7888899999999999999875432010 112234567776654
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.87 E-value=2.1e-07 Score=88.71 Aligned_cols=196 Identities=13% Similarity=0.109 Sum_probs=112.2
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CCCCcceEeecCCccccc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PSDRQYYAAGVPGSFHNR 134 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~~~~~f~~gvpgSFy~r 134 (360)
+...+|+|+|||+|..+..+.. . ...+|+-.|+.. +.....+.. +.... +..+.+++...
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~--------~--------~~~~v~giD~s~-~~~~~a~~~~~~~~~--i~~~~~D~~~~ 111 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINE--------K--------YGAHVHGVDICE-KMVNIAKLRNSDKNK--IEFEANDILKK 111 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHh--------h--------cCCEEEEEECCH-HHHHHHHHHcCcCCc--eEEEECCcccC
Confidence 3457899999999998766531 1 124667777643 222223321 11111 22233456666
Q ss_pred cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
-+|++++|+|+|..++|+++. .|...+|+.-++-|+|||++++.
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 789999999999888766431 13556788888999999999998
Q ss_pred ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhhh
Q 018119 215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQRQ 294 (360)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~~ 294 (360)
-....+... . -+.+...+ ... ....++++++.++++..| |++...+... ..+.
T Consensus 156 d~~~~~~~~----~----~~~~~~~~----~~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d~~--~~~~ 208 (263)
T PTZ00098 156 DYCADKIEN----W----DEEFKAYI----KKR------------KYTLIPIQEYGDLIKSCN-FQNVVAKDIS--DYWL 208 (263)
T ss_pred EeccccccC----c----HHHHHHHH----Hhc------------CCCCCCHHHHHHHHHHCC-CCeeeEEeCc--HHHH
Confidence 654443211 0 01111211 110 123579999999999995 9887766431 1110
Q ss_pred cCCChhHHHHHHHHhhhHHHHhhhchhHHHHHHHHHHHHHHh
Q 018119 295 LATNTPTVVSHLRANLEILVKEHFGNGIIEDLFDRFSKKIDE 336 (360)
Q Consensus 295 ~~~~~~~~~~~iRA~~e~~l~~hfg~~i~delf~r~~~~~~~ 336 (360)
. . -..+...+++-- .-+.+.+|++..+.+-.-+...+..
T Consensus 209 ~-~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (263)
T PTZ00098 209 E-L-LQVELKKLEEKK-EEFLKLYSEKEYNSLKDGWTRKIKD 247 (263)
T ss_pred H-H-HHHHHHHHHHhH-HHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 0 0 011222233322 2233467887777777777666554
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=98.75 E-value=9.6e-07 Score=87.19 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=88.2
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CC-CCcceEeecCCc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PS-DRQYYAAGVPGS 130 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~-~~~~f~~gvpgS 130 (360)
...-+|+|+|||+|.++..+.... ..+|.--|+..+- -...+.+ .. .+--|..+ .
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~----------------g~~v~gvD~s~~~-i~~a~~~~~~~g~~~~v~~~~~---D 176 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY----------------GANVKGITLSPVQ-AARANALAAAQGLSDKVSFQVA---D 176 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc----------------CCEEEEEECCHHH-HHHHHHHHHhcCCCCceEEEEc---C
Confidence 345789999999999988775521 0223333332111 0111111 00 11123322 3
Q ss_pred cccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119 131 FHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL 210 (360)
Q Consensus 131 Fy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 210 (360)
+.+.-||++++|+|+|..++|++.. ...+|+.-.+-|+|||+
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~d--------------------------------------~~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMPD--------------------------------------KRKFVQELARVAAPGGR 218 (340)
T ss_pred cccCCCCCCCccEEEECCchhccCC--------------------------------------HHHHHHHHHHHcCCCcE
Confidence 4444578899999999999988532 23466666788999999
Q ss_pred EEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 211 MALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 211 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
+++......+..+.... .. ..-...+..+.. .+.+|- ..+.+|+.+++++.| |...+.+.+
T Consensus 219 lvi~~~~~~~~~~~~~~-l~---~~~~~~~~~i~~----------~~~~p~-~~s~~~~~~~l~~aG-f~~v~~~d~ 279 (340)
T PLN02244 219 IIIVTWCHRDLEPGETS-LK---PDEQKLLDKICA----------AYYLPA-WCSTSDYVKLAESLG-LQDIKTEDW 279 (340)
T ss_pred EEEEEeccccccccccc-CC---HHHHHHHHHHHh----------hccCCC-CCCHHHHHHHHHHCC-CCeeEeeeC
Confidence 99987654432221100 00 011111222211 122332 348999999999996 988776655
No 10
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.74 E-value=6e-07 Score=92.12 Aligned_cols=189 Identities=15% Similarity=0.212 Sum_probs=111.6
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC--C-CcceEeecCCcccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS--D-RQYYAAGVPGSFHN 133 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~--~-~~~f~~gvpgSFy~ 133 (360)
...+|+|+|||+|..++.+.+. ...+|+--|+.. +.-...+.-.. . +--|.. +.+..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~----------------~~~~v~gvDiS~-~~l~~A~~~~~~~~~~v~~~~---~d~~~ 325 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAEN----------------FDVHVVGIDLSV-NMISFALERAIGRKCSVEFEV---ADCTK 325 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHh----------------cCCEEEEEECCH-HHHHHHHHHhhcCCCceEEEE---cCccc
Confidence 3468999999999876654321 124566666642 22222221110 1 112333 34666
Q ss_pred ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
..+|++++|+|+|..++||+.. ...+|+.-++-|+|||++++
T Consensus 326 ~~~~~~~fD~I~s~~~l~h~~d--------------------------------------~~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 326 KTYPDNSFDVIYSRDTILHIQD--------------------------------------KPALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred CCCCCCCEEEEEECCcccccCC--------------------------------------HHHHHHHHHHHcCCCeEEEE
Confidence 6789999999999999999643 23466677789999999999
Q ss_pred EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhh
Q 018119 214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQR 293 (360)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~ 293 (360)
....+....+. ..+...+. ..| ...++.+++.+++++.| |++..++.+.. .+
T Consensus 368 ~~~~~~~~~~~---------~~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d~~~--~~ 419 (475)
T PLN02336 368 SDYCRSPGTPS---------PEFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDVIAEDRTD--QF 419 (475)
T ss_pred EEeccCCCCCc---------HHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-CeeeeeecchH--HH
Confidence 98766543221 11111111 112 23678999999999995 99887765421 11
Q ss_pred hcCCChhHHHHHHHHh---hhHHHHhhhchhHHHHHHHHHHHHHHhc
Q 018119 294 QLATNTPTVVSHLRAN---LEILVKEHFGNGIIEDLFDRFSKKIDES 337 (360)
Q Consensus 294 ~~~~~~~~~~~~iRA~---~e~~l~~hfg~~i~delf~r~~~~~~~~ 337 (360)
...+..+..++ .+.++ ..+|++..+.+...+...+...
T Consensus 420 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 420 -----LQVLQRELDAVEKEKDEFI-SDFSEEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred -----HHHHHHHHHHHHhCHHHHH-HhcCHHHHHHHHHhHHHHHhhh
Confidence 12222333222 22222 4577777777777777666543
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.74 E-value=3.6e-08 Score=91.17 Aligned_cols=171 Identities=12% Similarity=0.118 Sum_probs=92.7
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC--CCcceEeecCCccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS--DRQYYAAGVPGSFHNR 134 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~--~~~~f~~gvpgSFy~r 134 (360)
.-+|+|+|||+|..+..+.+.+ .|..+|+-.|+.. ..-...+. +.. ..+ +.-+.+.+..-
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~--v~~~~~d~~~~ 108 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSE-NMLSVGRQKVKDAGLHN--VELVHGNAMEL 108 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHHHHHhcCCCc--eEEEEechhcC
Confidence 4699999999999877554321 1335677777642 22222221 110 011 11222334444
Q ss_pred cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
.+|++++|+|+++.++||++. ...+|+.-.+-|+|||++++.
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGLRNVPD--------------------------------------YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CCCCCCccEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCeEEEEE
Confidence 578899999999999999643 223566667889999999987
Q ss_pred ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
-.+.++...... ....++..+-..+..+...+........ ..-..+|+.+|+++.+++.| |++.+++.+
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 151 ETSQPTIPGFKQ-LYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred ECCCCCChHHHH-HHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 655443210000 0000000001111111111110000000 11234789999999999996 998887766
No 12
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.69 E-value=2e-07 Score=87.08 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=93.0
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CC---CCCcceEeecCCcccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LP---SDRQYYAAGVPGSFHN 133 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~---~~~~~f~~gvpgSFy~ 133 (360)
..+|+|+|||+|..+..+.+.+- .|..+++--|+-. ++-...+. +. ...++ .-+-|.+..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~-------------~p~~~v~gvD~s~-~ml~~a~~~~~~~~~~~~v--~~~~~d~~~ 117 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNIN-------------QPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPV--EILCNDIRH 117 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcC-------------CCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCe--EEEECChhh
Confidence 45899999999998877654321 2446666666632 22222221 11 11111 122345554
Q ss_pred ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
-.+| +.|+++|++++||++. .|...+|+.-.+-|+|||++++
T Consensus 118 ~~~~--~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 118 VEIK--NASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CCCC--CCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEE
Confidence 4444 5789999999999643 1344578888899999999998
Q ss_pred EecCCCCCCCCCCCchhhHHHHHHHHHHHHHH-cCCCCHhhh----cccCCCcccCCHHHHHHHHHhCCcee
Q 018119 214 IVPCLPDGISPGECSVLASADLLGDCLMDMAK-MGLLSEAQV----DSFNLPSYFPTPQELKALLKRNASFS 280 (360)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~P~y~ps~eE~~~~ie~~g~F~ 280 (360)
.-..+.+... ..+.+...+..+.. .|. +++++ +.+.-.....|++|+.+.+++.| |+
T Consensus 160 ~d~~~~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 160 SEKFRFEDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred eecccCCCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 8544333211 11333333433333 443 44433 22222344579999999999996 75
No 13
>PRK08317 hypothetical protein; Provisional
Probab=98.68 E-value=5.7e-06 Score=75.71 Aligned_cols=220 Identities=13% Similarity=0.077 Sum_probs=112.9
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC--CCCcceEeecCCcccc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQYYAAGVPGSFHN 133 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~--~~~~~f~~gvpgSFy~ 133 (360)
....+|+|+|||+|..+..+.... .|.-+++--|+...-....-+... ....-|..+ .+..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~---d~~~ 80 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG---DADG 80 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec---cccc
Confidence 345789999999998777664432 023455556653321111111100 011112222 2333
Q ss_pred ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
..+|++++|++++..++||+.+ ...+|+.-.+-|+|||.+++
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLED--------------------------------------PARALAEIARVLRPGGRVVV 122 (241)
T ss_pred CCCCCCCceEEEEechhhccCC--------------------------------------HHHHHHHHHHHhcCCcEEEE
Confidence 4467889999999999999644 33467777789999999998
Q ss_pred EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEeccchhh
Q 018119 214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLALSAQR 293 (360)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~~~~~~ 293 (360)
....-+...... ... ..+...+..+...+ .- ..+..++...+++.| |.+..++.+......
T Consensus 123 ~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~----------~~---~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~ 183 (241)
T PRK08317 123 LDTDWDTLVWHS--GDR---ALMRKILNFWSDHF----------AD---PWLGRRLPGLFREAG-LTDIEVEPYTLIETD 183 (241)
T ss_pred EecCCCceeecC--CCh---HHHHHHHHHHHhcC----------CC---CcHHHHHHHHHHHcC-CCceeEEEEEEeccC
Confidence 864322111000 011 12222222221111 00 123468899999985 988777765322111
Q ss_pred hcCCChhHHHHHHHHhhhHHHH-hhhchhHHHHHHHHHHHHHHhcchhhccccCCCcEEEEEEEEec
Q 018119 294 QLATNTPTVVSHLRANLEILVK-EHFGNGIIEDLFDRFSKKIDESSVYSQTSVYKPLVENVIILKHN 359 (360)
Q Consensus 294 ~~~~~~~~~~~~iRA~~e~~l~-~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~r~ 359 (360)
.........+......+.. .-+.++-+++++..+++...... ..-.+.++++..||
T Consensus 184 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~k 240 (241)
T PRK08317 184 ---LKEADKGFGLIRAARRAVEAGGISADEADAWLADLAQLARAGE-------FFFSVTGFLVVGRK 240 (241)
T ss_pred ---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC-------EEEEEEEEEEEEeC
Confidence 0111122222222222222 22345666777777766543211 12246667776665
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.66 E-value=1.1e-07 Score=93.39 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=90.9
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC----CCCCcceEeecCCcccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL----PSDRQYYAAGVPGSFHN 133 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l----~~~~~~f~~gvpgSFy~ 133 (360)
.-+|+|+|||+|..++.+... .+ -+|+--| |+..+..-++.. ....++ .-+++.+..
T Consensus 123 g~~VLDIGCG~G~~~~~la~~---------------g~-~~V~GiD-~S~~~l~q~~a~~~~~~~~~~i--~~~~~d~e~ 183 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGA---------------GA-KLVVGID-PSQLFLCQFEAVRKLLGNDQRA--HLLPLGIEQ 183 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHc---------------CC-CEEEEEc-CCHHHHHHHHHHHHhcCCCCCe--EEEeCCHHH
Confidence 368999999999988755321 12 2366666 334443332221 111122 113334443
Q ss_pred ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
--+ ++++|+|+|..++||+.. ...+|+.-++-|+|||++++
T Consensus 184 lp~-~~~FD~V~s~~vl~H~~d--------------------------------------p~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 184 LPA-LKAFDTVFSMGVLYHRRS--------------------------------------PLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred CCC-cCCcCEEEECChhhccCC--------------------------------------HHHHHHHHHHhcCCCcEEEE
Confidence 333 688999999999998433 33467777789999999999
Q ss_pred EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119 214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPLA 288 (360)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~ 288 (360)
.....+..... .+...+.+..+.-.++.||.+++..++++.| |++.+++...
T Consensus 225 ~~~~i~~~~~~----------------------~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~~ 276 (322)
T PRK15068 225 ETLVIDGDENT----------------------VLVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDVS 276 (322)
T ss_pred EEEEecCCCcc----------------------ccCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeCC
Confidence 86543322100 0011122223333456799999999999996 9988777553
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.65 E-value=1e-06 Score=83.86 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=88.1
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CC------CCCcceEeecCC
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LP------SDRQYYAAGVPG 129 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~------~~~~~f~~gvpg 129 (360)
...+|+|+|||+|..+..+...+ .|.-+|+--|.-. +.-...+. .+ ..+--|..+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~-~ml~~A~~r~~~~~~~~~~~i~~~~~--- 134 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSS-EQLAVAASRQELKAKSCYKNIEWIEG--- 134 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHHHhhhhhhccCCCeEEEEc---
Confidence 35799999999999776543321 0123344444321 11111111 00 001112222
Q ss_pred ccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119 130 SFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG 209 (360)
Q Consensus 130 SFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 209 (360)
....--||++|+|++++++++||+.. ...+|+.-++-|+|||
T Consensus 135 d~~~lp~~~~sfD~V~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpGG 176 (261)
T PLN02233 135 DATDLPFDDCYFDAITMGYGLRNVVD--------------------------------------RLKAMQEMYRVLKPGS 176 (261)
T ss_pred ccccCCCCCCCEeEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCc
Confidence 23334578899999999999999543 3346777778999999
Q ss_pred eEEEEecCCCCCCCCCCCchhhHHHHHHH-HHHHHH-HcCCCCHhhhcccCCC---cccCCHHHHHHHHHhCCceeEEEE
Q 018119 210 LMALIVPCLPDGISPGECSVLASADLLGD-CLMDMA-KMGLLSEAQVDSFNLP---SYFPTPQELKALLKRNASFSIEKF 284 (360)
Q Consensus 210 ~lvl~~~g~~~~~~~~~~~~~~~~~~l~~-al~~mv-~eG~i~~e~~d~f~~P---~y~ps~eE~~~~ie~~g~F~I~~~ 284 (360)
++++.-.++++... ...+++..-. .+.-+. .-|.- +.+. .++ -.+++.+|+.+.+++.| |++.+.
T Consensus 177 ~l~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~y~--~l~~s~~~f~s~~el~~ll~~aG-F~~~~~ 246 (261)
T PLN02233 177 RVSILDFNKSTQPF-----TTSMQEWMIDNVVVPVATGYGLA--KEYE--YLKSSINEYLTGEELEKLALEAG-FSSAKH 246 (261)
T ss_pred EEEEEECCCCCcHH-----HHHHHHHHHhhhhhHHHHHhCCh--HHHH--HHHHHHHhcCCHHHHHHHHHHCC-CCEEEE
Confidence 99999777664311 1111111111 111010 01221 1110 000 12789999999999985 987654
Q ss_pred EE
Q 018119 285 EP 286 (360)
Q Consensus 285 e~ 286 (360)
..
T Consensus 247 ~~ 248 (261)
T PLN02233 247 YE 248 (261)
T ss_pred EE
Confidence 43
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.64 E-value=1.3e-07 Score=81.41 Aligned_cols=138 Identities=22% Similarity=0.299 Sum_probs=85.9
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccc--c
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFH--N 133 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy--~ 133 (360)
....+|+|+|||+|.++..+ .+. + .++.-.|.-...-.. ...++..|. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l--------~~~--------~-~~~~g~D~~~~~~~~------------~~~~~~~~~~~~ 71 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL--------AKR--------G-FEVTGVDISPQMIEK------------RNVVFDNFDAQD 71 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH--------HHT--------T-SEEEEEESSHHHHHH------------TTSEEEEEECHT
T ss_pred CCCCEEEEEcCCCCHHHHHH--------HHh--------C-CEEEEEECCHHHHhh------------hhhhhhhhhhhh
Confidence 45679999999999765544 111 1 367776664211111 001111121 4
Q ss_pred ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
..+|++++|+|+|+.+|||+.. +..+|+.-.+-|+|||.+++
T Consensus 72 ~~~~~~~fD~i~~~~~l~~~~d--------------------------------------~~~~l~~l~~~LkpgG~l~~ 113 (161)
T PF13489_consen 72 PPFPDGSFDLIICNDVLEHLPD--------------------------------------PEEFLKELSRLLKPGGYLVI 113 (161)
T ss_dssp HHCHSSSEEEEEEESSGGGSSH--------------------------------------HHHHHHHHHHCEEEEEEEEE
T ss_pred hhccccchhhHhhHHHHhhccc--------------------------------------HHHHHHHHHHhcCCCCEEEE
Confidence 4568899999999999999653 34577888899999999999
Q ss_pred EecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEE
Q 018119 214 IVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEK 283 (360)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~ 283 (360)
....+... ....+.. -....... --..+.+.++++.++++.| |+|..
T Consensus 114 ~~~~~~~~--------------~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 114 SDPNRDDP--------------SPRSFLK---WRYDRPYG-----GHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEEBTTSH--------------HHHHHHH---CCGTCHHT-----TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred EEcCCcch--------------hhhHHHh---cCCcCccC-----ceeccCCHHHHHHHHHHCC-CEEEE
Confidence 99876531 0011111 01111100 1125669999999999995 98864
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.59 E-value=1.1e-06 Score=82.79 Aligned_cols=161 Identities=18% Similarity=0.207 Sum_probs=89.3
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC----CCCcceEeecCCccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP----SDRQYYAAGVPGSFH 132 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~----~~~~~f~~gvpgSFy 132 (360)
..-+|+|+|||+|.+++.+...+- .|..+|+--|.- -+.-...+..- ...++ .-+.|++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~-------------~~~~~v~gvD~S-~~ml~~A~~~~~~~~~~~~v--~~~~~d~~ 119 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIH-------------HDNCKIIAIDNS-PAMIERCRRHIDAYKAPTPV--DVIEGDIR 119 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcC-------------CCCCeEEEEeCC-HHHHHHHHHHHHhcCCCCCe--EEEeCChh
Confidence 346899999999998876543221 133555555542 22222222210 01111 11223343
Q ss_pred cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119 133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA 212 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 212 (360)
.-.+| ..|+++++.++||+.. . +...+|+.-++-|+|||.++
T Consensus 120 ~~~~~--~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 120 DIAIE--NASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQGLNPGGALV 161 (247)
T ss_pred hCCCC--CCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHhcCCCCEEE
Confidence 32233 5899999999999753 1 13346777789999999999
Q ss_pred EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccC---CCccc-CCHHHHHHHHHhCCcee
Q 018119 213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFN---LPSYF-PTPQELKALLKRNASFS 280 (360)
Q Consensus 213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~---~P~y~-ps~eE~~~~ie~~g~F~ 280 (360)
+.=.-..+... ..+.+...|.++....-.+++++..+. --... -|.++..+++++.| |+
T Consensus 162 l~e~~~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 162 LSEKFSFEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred EEEecCCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence 97322222111 123444556655545445555553320 11223 37888888888886 54
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.58 E-value=1e-06 Score=83.20 Aligned_cols=159 Identities=14% Similarity=0.219 Sum_probs=88.3
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CC---CCc-ceEeecCCc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PS---DRQ-YYAAGVPGS 130 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~---~~~-~f~~gvpgS 130 (360)
+...+|+|+|||+|..|..+... ..+|+..|+.. +.-...+.. .. ..+ -|+.+ +
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-----------------g~~v~~vD~s~-~~l~~a~~~~~~~g~~~~v~~~~~---d 101 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-----------------GHQVILCDLSA-EMIQRAKQAAEAKGVSDNMQFIHC---A 101 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-----------------CCEEEEEECCH-HHHHHHHHHHHhcCCccceEEEEc---C
Confidence 34579999999999888777431 13455555432 222222211 10 011 12222 2
Q ss_pred cccc-cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119 131 FHNR-LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG 209 (360)
Q Consensus 131 Fy~r-lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 209 (360)
...- -+|++++|+|++..+|||+... ..+|+.-++-|+|||
T Consensus 102 ~~~l~~~~~~~fD~V~~~~vl~~~~~~--------------------------------------~~~l~~~~~~LkpgG 143 (255)
T PRK11036 102 AQDIAQHLETPVDLILFHAVLEWVADP--------------------------------------KSVLQTLWSVLRPGG 143 (255)
T ss_pred HHHHhhhcCCCCCEEEehhHHHhhCCH--------------------------------------HHHHHHHHHHcCCCe
Confidence 2221 1456899999999999997541 124555567899999
Q ss_pred eEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119 210 LMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP 286 (360)
Q Consensus 210 ~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~ 286 (360)
++++.+...... .+-.++..-+ +.+..|+...+.. .-.|.+..+++|+.+++++.| |++....-
T Consensus 144 ~l~i~~~n~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~~g 207 (255)
T PRK11036 144 ALSLMFYNANGL---------LMHNMVAGNF-DYVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGKTG 207 (255)
T ss_pred EEEEEEECccHH---------HHHHHHccCh-HHHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeeeee
Confidence 999887543311 0001111111 1123333221111 123566789999999999985 99876553
No 19
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.58 E-value=1.8e-06 Score=79.49 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=57.5
Q ss_pred CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119 139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCL 218 (360)
Q Consensus 139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 218 (360)
+++|+++|..++||+.. +..+|+.-++-|+|||++++.-...
T Consensus 66 ~~fD~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 66 DTYDLVFGFEVIHHIKD--------------------------------------KMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred CCCCEeehHHHHHhCCC--------------------------------------HHHHHHHHHHHcCCCCEEEEEEccc
Confidence 58999999999999532 4457888889999999999875422
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 219 PDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 219 ~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
... + + . ..-..+.|.++.+|+.+.+++.| |++.+.+.+
T Consensus 108 ~~~---~---------------------~-~-----~~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~ 145 (224)
T smart00828 108 NLL---S---------------------A-I-----EHEETTSYLVTREEWAELLARNN-LRVVEGVDA 145 (224)
T ss_pred ccC---c---------------------c-c-----cccccccccCCHHHHHHHHHHCC-CeEEEeEEC
Confidence 110 0 0 0 00123456899999999999885 999888766
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.55 E-value=9.4e-07 Score=80.52 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=76.0
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcc-eEeecCCccccccC
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQY-YAAGVPGSFHNRLF 136 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~-f~~gvpgSFy~rlf 136 (360)
.-+|+|+|||+|.+++.+.+. -.+|.--|+.. +.-...+..-....+ -+..+.+.+...-+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~-----------------g~~V~gvD~S~-~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~ 92 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN-----------------GFDVTAWDKNP-MSIANLERIKAAENLDNLHTAVVDLNNLTF 92 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC-----------------CCEEEEEeCCH-HHHHHHHHHHHHcCCCcceEEecChhhCCc
Confidence 368999999999999887641 02333334421 111111110000000 01111112222123
Q ss_pred CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE-e
Q 018119 137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI-V 215 (360)
Q Consensus 137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~-~ 215 (360)
+ +++|+|+|+.++||+.. .|...+++.-++-|+|||++++. +
T Consensus 93 ~-~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 93 D-GEYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred C-CCcCEEEEecchhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3 57999999999999643 13556788888999999996554 3
Q ss_pred cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119 216 PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE 285 (360)
Q Consensus 216 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e 285 (360)
+...+. +. ..| |-+..+.+|+.+.++ .|++.+.+
T Consensus 136 ~~~~~~-~~--------------------~~~------------~~~~~~~~el~~~~~---~~~~~~~~ 169 (197)
T PRK11207 136 MDTADY-PC--------------------TVG------------FPFAFKEGELRRYYE---GWEMVKYN 169 (197)
T ss_pred ecCCCC-CC--------------------CCC------------CCCccCHHHHHHHhC---CCeEEEee
Confidence 322211 00 001 235578899998887 48887764
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.54 E-value=2.9e-06 Score=83.01 Aligned_cols=90 Identities=13% Similarity=0.125 Sum_probs=59.7
Q ss_pred CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119 137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
+.+++|+|+|+.+|||+.. ...+|+.-++-|+|||.||+...
T Consensus 185 ~~~~FD~V~s~gvL~H~~d--------------------------------------p~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 185 ELYAFDTVFSMGVLYHRKS--------------------------------------PLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCCcCEEEEcchhhccCC--------------------------------------HHHHHHHHHHhcCCCCEEEEEEE
Confidence 3468999999999999532 23367777899999999999865
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
..+.... .. +...+.+..+.-.++.||.+++..++++.| |+..++...
T Consensus 227 ~i~g~~~----------~~------------l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~ 274 (314)
T TIGR00452 227 VIDGDLN----------TV------------LVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDV 274 (314)
T ss_pred EecCccc----------cc------------cCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEec
Confidence 4321100 00 011111222333456789999999999985 987766644
No 22
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.45 E-value=2.1e-05 Score=79.07 Aligned_cols=87 Identities=10% Similarity=0.199 Sum_probs=61.5
Q ss_pred CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119 138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC 217 (360)
Q Consensus 138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 217 (360)
++++|.|+|...+||+.. +++..+++.-.+-|+|||++++...+
T Consensus 226 ~~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 468999999999988522 13456778888999999999999877
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCc-ccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPS-YFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
.+...... ..-++.+.+|- +.|+++++....+ . .|+|..++.+
T Consensus 270 ~~~~~~~~-------------------------~~~i~~yifp~g~lps~~~i~~~~~-~-~~~v~d~~~~ 313 (383)
T PRK11705 270 SNKTDTNV-------------------------DPWINKYIFPNGCLPSVRQIAQASE-G-LFVMEDWHNF 313 (383)
T ss_pred CCCCCCCC-------------------------CCCceeeecCCCcCCCHHHHHHHHH-C-CcEEEEEecC
Confidence 66431100 01123455663 6899999999877 3 5999888766
No 23
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.45 E-value=2.5e-05 Score=75.01 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=91.6
Q ss_pred eeEEeeecCCCCCccHHHHHH-------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119 58 VFSIADLGCSVGPNTFNAVQN-------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA 124 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~-------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~ 124 (360)
-.+|+|+|||-|..++.+.+. -.+.++++....+.+ ..++|.+.|-. |+
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~-~~v~v~~~D~~--~~--------------- 124 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE-DRVEVRLQDYR--DL--------------- 124 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS-STEEEEES-GG--G----------------
T ss_pred CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEeecc--cc---------------
Confidence 469999999999999998885 233344444444321 13666666532 11
Q ss_pred eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119 125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE 204 (360)
Q Consensus 125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E 204 (360)
| .++|-|+|--++.-+.. +++..|++.-++-
T Consensus 125 ------------~-~~fD~IvSi~~~Ehvg~------------------------------------~~~~~~f~~~~~~ 155 (273)
T PF02353_consen 125 ------------P-GKFDRIVSIEMFEHVGR------------------------------------KNYPAFFRKISRL 155 (273)
T ss_dssp ---------------S-SEEEEESEGGGTCG------------------------------------GGHHHHHHHHHHH
T ss_pred ------------C-CCCCEEEEEechhhcCh------------------------------------hHHHHHHHHHHHh
Confidence 1 18888888877766421 3577899999999
Q ss_pred hccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCc-ccCCHHHHHHHHHhCCceeEEE
Q 018119 205 LASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPS-YFPTPQELKALLKRNASFSIEK 283 (360)
Q Consensus 205 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~eE~~~~ie~~g~F~I~~ 283 (360)
|+|||++++...+..+... . .+.-.+.+-+..+.+|- +.|+.+|+...++.. .|+|..
T Consensus 156 LkpgG~~~lq~i~~~~~~~----------~----------~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~-~l~v~~ 214 (273)
T PF02353_consen 156 LKPGGRLVLQTITHRDPPY----------H----------AERRSSSDFIRKYIFPGGYLPSLSEILRAAEDA-GLEVED 214 (273)
T ss_dssp SETTEEEEEEEEEE--HHH----------H----------HCTTCCCHHHHHHTSTTS---BHHHHHHHHHHT-T-EEEE
T ss_pred cCCCcEEEEEecccccccc----------h----------hhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcC-CEEEEE
Confidence 9999999999876654310 0 00000001122333454 568999999988877 599998
Q ss_pred EEEeccchhhhcCCChhHHHHHHHHhhhHHHH
Q 018119 284 FEPLALSAQRQLATNTPTVVSHLRANLEILVK 315 (360)
Q Consensus 284 ~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~ 315 (360)
.+.+- ..++.++|+|.+.+.+
T Consensus 215 ~~~~~-----------~hY~~Tl~~W~~~f~~ 235 (273)
T PF02353_consen 215 VENLG-----------RHYARTLRAWRENFDA 235 (273)
T ss_dssp EEE-H-----------HHHHHHHHHHHHHHHH
T ss_pred EEEcC-----------cCHHHHHHHHHHHHHH
Confidence 87762 3344455555555443
No 24
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.43 E-value=5.6e-06 Score=81.30 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=88.1
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-C---CCCCc-ceEeecCCccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-L---PSDRQ-YYAAGVPGSFH 132 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l---~~~~~-~f~~gvpgSFy 132 (360)
..+|+|+|||+|..+..+.. +..+|+--|.-.. .-...+. . +.... -|.. +++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~-----------------~g~~V~GID~s~~-~i~~Ar~~~~~~~~~~~i~~~~---~dae 190 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR-----------------MGATVTGVDAVDK-NVKIARLHADMDPVTSTIEYLC---TTAE 190 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH-----------------cCCEEEEEeCCHH-HHHHHHHHHHhcCcccceeEEe---cCHH
Confidence 46999999999998765532 0134555555421 1111111 0 00011 1222 3344
Q ss_pred cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119 133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA 212 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 212 (360)
.-.++++++|+|++..+|||+.. ...||+.-++-|+|||+++
T Consensus 191 ~l~~~~~~FD~Vi~~~vLeHv~d--------------------------------------~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 191 KLADEGRKFDAVLSLEVIEHVAN--------------------------------------PAEFCKSLSALTIPNGATV 232 (322)
T ss_pred HhhhccCCCCEEEEhhHHHhcCC--------------------------------------HHHHHHHHHHHcCCCcEEE
Confidence 43467789999999999999554 2347788888899999999
Q ss_pred EEecCCCCCCCCCCCchhhHHHHH-HHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119 213 LIVPCLPDGISPGECSVLASADLL-GDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP 286 (360)
Q Consensus 213 l~~~g~~~~~~~~~~~~~~~~~~l-~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~ 286 (360)
+....+... ......+ ..-+..++..|. .....+.+++|+..+++..| |++..+.-
T Consensus 233 ist~nr~~~--------~~~~~i~~~eyi~~~lp~gt---------h~~~~f~tp~eL~~lL~~aG-f~i~~~~G 289 (322)
T PLN02396 233 LSTINRTMR--------AYASTIVGAEYILRWLPKGT---------HQWSSFVTPEELSMILQRAS-VDVKEMAG 289 (322)
T ss_pred EEECCcCHH--------HHHHhhhhHHHHHhcCCCCC---------cCccCCCCHHHHHHHHHHcC-CeEEEEee
Confidence 998654311 0000110 011111111121 11223789999999999985 99887763
No 25
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.42 E-value=1.2e-06 Score=82.43 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=97.0
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCC---cceEeecCCcccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDR---QYYAAGVPGSFHN 133 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~---~~f~~gvpgSFy~ 133 (360)
...+|+|+|||||--|+.+...+= +-+|..-|...+=.+.-=+-+.+.. -.|+.| ...+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g---------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~---dAe~ 112 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG---------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG---DAEN 112 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC---------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEe---chhh
Confidence 579999999999998888754321 2455555554322222111122111 124444 4888
Q ss_pred ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
-.||++|+|++.+++.|||+.+.+. .|+--++=|+|||++++
T Consensus 113 LPf~D~sFD~vt~~fglrnv~d~~~--------------------------------------aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNVTDIDK--------------------------------------ALKEMYRVLKPGGRLLV 154 (238)
T ss_pred CCCCCCccCEEEeeehhhcCCCHHH--------------------------------------HHHHHHHhhcCCeEEEE
Confidence 8899999999999999999776543 34555588999999988
Q ss_pred EecCCCCCCCCCCCchhhHHHHHHH-HHHHHHHcCCCC--Hhhh-cccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119 214 IVPCLPDGISPGECSVLASADLLGD-CLMDMAKMGLLS--EAQV-DSFNLPSYFPTPQELKALLKRNASFSIEKFE 285 (360)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~~~~l~~-al~~mv~eG~i~--~e~~-d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e 285 (360)
.=..++...+... ..+..... ++--+. .+++ .+.+ .-....--+|+.+++.+.+++.| |+....+
T Consensus 155 le~~~p~~~~~~~----~~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~~~ 223 (238)
T COG2226 155 LEFSKPDNPVLRK----AYILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVRYE 223 (238)
T ss_pred EEcCCCCchhhHH----HHHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEeeE
Confidence 8666664422111 11111122 111111 1111 1111 11123334799999999999985 8765543
No 26
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.41 E-value=5.6e-07 Score=70.31 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=60.4
Q ss_pred eeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCccccccCCCCc
Q 018119 62 ADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNRLFPKAS 140 (360)
Q Consensus 62 aDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~rlfP~~S 140 (360)
+|+|||+|.++..+.+. +...|+-.|.-. +.-...+. ......-+.. +++..--||++|
T Consensus 1 LdiG~G~G~~~~~l~~~----------------~~~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR----------------GGASVTGIDISE-EMLEQARKRLKNEGVSFRQ---GDAEDLPFPDNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHT----------------TTCEEEEEES-H-HHHHHHHHHTTTSTEEEEE---SBTTSSSS-TT-
T ss_pred CEecCcCCHHHHHHHhc----------------cCCEEEEEeCCH-HHHHHHHhcccccCchhee---ehHHhCcccccc
Confidence 69999999998887554 124555555532 22222222 2111111333 447777999999
Q ss_pred eeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 141 INFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 141 ~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
+|+++++.++||+ + |...+|+.-++-|||||++++
T Consensus 61 fD~v~~~~~~~~~---~-----------------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 61 FDVVFSNSVLHHL---E-----------------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEEESHGGGS---S-----------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccceeec---c-----------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999997 1 356688888899999999985
No 27
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.40 E-value=2.8e-06 Score=81.78 Aligned_cols=124 Identities=18% Similarity=0.293 Sum_probs=77.6
Q ss_pred eEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEee
Q 018119 59 FSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAG 126 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~g 126 (360)
-+|+|+|||+|.|++.+.. ..++.+++.....+ ..+++..-|+..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~---l~v~~~~~D~~~-------------------- 178 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKEN---LNIRTGLYDINS-------------------- 178 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CceEEEEechhc--------------------
Confidence 3899999999999988865 23333333222211 123333333321
Q ss_pred cCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119 127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA 206 (360)
Q Consensus 127 vpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 206 (360)
.- +++++|+|+|+.+||++.. .++..+|+.-.+-|+
T Consensus 179 -------~~-~~~~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~Lk 214 (287)
T PRK12335 179 -------AS-IQEEYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTN 214 (287)
T ss_pred -------cc-ccCCccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcC
Confidence 11 1478999999999999643 146678888889999
Q ss_pred cCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCC-cccCCHHHHHHHHHhCCceeEEEEE
Q 018119 207 SGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLP-SYFPTPQELKALLKRNASFSIEKFE 285 (360)
Q Consensus 207 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~eE~~~~ie~~g~F~I~~~e 285 (360)
|||++++...-..+..+ ...| -+..+.+|+++.+.. |+|.+.+
T Consensus 215 pgG~~l~v~~~~~~~~~---------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 215 PGGYNLIVCAMDTEDYP---------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred CCcEEEEEEecccccCC---------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 99997765432221100 1123 345779999998753 9988774
No 28
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.33 E-value=6.3e-06 Score=75.79 Aligned_cols=162 Identities=17% Similarity=0.239 Sum_probs=91.5
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-CC---CCc-ceEeecCCccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-PS---DRQ-YYAAGVPGSFH 132 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~~---~~~-~f~~gvpgSFy 132 (360)
..+|+|+|||+|..+..+.... ++..+++..|+..+ .-...+.. .. ..+ -|.. +++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~~~~~---~d~~ 113 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEG-MLAVGREKLRDLGLSGNVEFVQ---GDAE 113 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHH-HHHHHHHhhcccccccCeEEEe---cccc
Confidence 4799999999999877764432 01366777777432 21222221 11 111 1222 3455
Q ss_pred cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119 133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA 212 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 212 (360)
...++.+++|++++++++|++.+ ...+|+...+-|+|||+++
T Consensus 114 ~~~~~~~~~D~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 114 ALPFPDNSFDAVTIAFGLRNVPD--------------------------------------IDKALREMYRVLKPGGRLV 155 (239)
T ss_pred cCCCCCCCccEEEEecccccCCC--------------------------------------HHHHHHHHHHhccCCcEEE
Confidence 55577889999999999998654 2335677778899999998
Q ss_pred EEecCCCCCCCCCCCchhhHHHHHHHHHH--------HHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEE
Q 018119 213 LIVPCLPDGISPGECSVLASADLLGDCLM--------DMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF 284 (360)
Q Consensus 213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~--------~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~ 284 (360)
+.-...+.... +..+.+.+. .+........+.+. +.-..+++.+++..++++.| |++.+.
T Consensus 156 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aG-f~~~~~ 223 (239)
T PRK00216 156 ILEFSKPTNPP---------LKKAYDFYLFKVLPLIGKLISKNAEAYSYLA--ESIRAFPDQEELAAMLEEAG-FERVRY 223 (239)
T ss_pred EEEecCCCchH---------HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHH--HHHHhCCCHHHHHHHHHhCC-Cceeee
Confidence 77544432211 111111111 11111110000000 00023579999999999995 988777
Q ss_pred EEe
Q 018119 285 EPL 287 (360)
Q Consensus 285 e~~ 287 (360)
..+
T Consensus 224 ~~~ 226 (239)
T PRK00216 224 RNL 226 (239)
T ss_pred eee
Confidence 655
No 29
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.33 E-value=3.1e-06 Score=77.02 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=57.7
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC--C-CcceEeecCCccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS--D-RQYYAAGVPGSFHNR 134 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~--~-~~~f~~gvpgSFy~r 134 (360)
+.+|+|+|||+|.+++.+... -.+|+--|+.. +.-...+.... . +-.+..+ ..-..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-----------------g~~V~~iD~s~-~~l~~a~~~~~~~~~~v~~~~~---d~~~~ 89 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-----------------GYDVRAWDHNP-ASIASVLDMKARENLPLRTDAY---DINAA 89 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-----------------CCeEEEEECCH-HHHHHHHHHHHHhCCCceeEec---cchhc
Confidence 469999999999999988641 03444445432 11111111100 0 0001111 11111
Q ss_pred cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
-+| +++|+++|+.++||++. .|+..+++.-++-|+|||++++.
T Consensus 90 ~~~-~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 90 ALN-EDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ccc-CCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCCCcEEEEE
Confidence 123 57999999999999643 13556788888999999996654
Q ss_pred e
Q 018119 215 V 215 (360)
Q Consensus 215 ~ 215 (360)
.
T Consensus 133 ~ 133 (195)
T TIGR00477 133 A 133 (195)
T ss_pred E
Confidence 3
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.31 E-value=3.1e-06 Score=68.86 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=66.5
Q ss_pred eEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119 59 FSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA 124 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~ 124 (360)
-+|+|+|||+|..++.+.+ ..++..+++..... ..+.++++..|+ ..++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~-~~~~~~------------- 67 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA-EFDPDF------------- 67 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC-HGGTTT-------------
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc-ccCccc-------------
Confidence 5799999999999999998 56776666653322 234578777777 111111
Q ss_pred eecCCccccccCCCCceeEEEecc-cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119 125 AGVPGSFHNRLFPKASINFFHCSY-GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ 203 (360)
Q Consensus 125 ~gvpgSFy~rlfP~~S~h~~~Ss~-alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 203 (360)
...+|+++++. ++|++-.. .+...+|+.-.+
T Consensus 68 -------------~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~ 99 (112)
T PF12847_consen 68 -------------LEPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLERIRR 99 (112)
T ss_dssp -------------SSCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHHHHH
T ss_pred -------------CCCCCEEEECCCccccccch-----------------------------------hHHHHHHHHHHH
Confidence 12499999999 77763221 246667888899
Q ss_pred HhccCCeEEEEe
Q 018119 204 ELASGGLMALIV 215 (360)
Q Consensus 204 EL~pGG~lvl~~ 215 (360)
-|+|||+|++.-
T Consensus 100 ~L~pgG~lvi~~ 111 (112)
T PF12847_consen 100 LLKPGGRLVINT 111 (112)
T ss_dssp HEEEEEEEEEEE
T ss_pred hcCCCcEEEEEE
Confidence 999999999863
No 31
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=8.5e-05 Score=71.44 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=119.7
Q ss_pred ceeEEeeecCCCCCccHHHHHHH-------------HHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNI-------------IDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY 123 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~i-------------i~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f 123 (360)
.-.+|+|+|||-|..++.++... .+..+++..+.+.+. .++|.+-|.+ ||+.
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~-~v~v~l~d~r--d~~e------------ 136 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLED-NVEVRLQDYR--DFEE------------ 136 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCc-ccEEEecccc--cccc------------
Confidence 35899999999999999999864 333344444444332 4999999985 5655
Q ss_pred EeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119 124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ 203 (360)
Q Consensus 124 ~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 203 (360)
.+|-|+|-=+++.+.. +-+..|++.-.+
T Consensus 137 ----------------~fDrIvSvgmfEhvg~------------------------------------~~~~~ff~~~~~ 164 (283)
T COG2230 137 ----------------PFDRIVSVGMFEHVGK------------------------------------ENYDDFFKKVYA 164 (283)
T ss_pred ----------------ccceeeehhhHHHhCc------------------------------------ccHHHHHHHHHh
Confidence 3777777777776544 236679999999
Q ss_pred HhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCC-cccCCHHHHHHHHHhCCceeEE
Q 018119 204 ELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLP-SYFPTPQELKALLKRNASFSIE 282 (360)
Q Consensus 204 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~eE~~~~ie~~g~F~I~ 282 (360)
-|+|||+|++-..+.+..... . ...| .+.+.+| -+.||..++....++. +|.+.
T Consensus 165 ~L~~~G~~llh~I~~~~~~~~-~----------~~~~-------------i~~yiFPgG~lPs~~~i~~~~~~~-~~~v~ 219 (283)
T COG2230 165 LLKPGGRMLLHSITGPDQEFR-R----------FPDF-------------IDKYIFPGGELPSISEILELASEA-GFVVL 219 (283)
T ss_pred hcCCCceEEEEEecCCCcccc-c----------chHH-------------HHHhCCCCCcCCCHHHHHHHHHhc-CcEEe
Confidence 999999999998877653110 0 0001 1122233 3468999999998888 49988
Q ss_pred EEEEeccchhhhcCCChhHHHHHHHHhhhHHHHhhh---chhHHHHHHHHHHHHHHhcchhh
Q 018119 283 KFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHF---GNGIIEDLFDRFSKKIDESSVYS 341 (360)
Q Consensus 283 ~~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~~hf---g~~i~delf~r~~~~~~~~~~~~ 341 (360)
..+.+- ..++..++.|.+.+-+ +. +...-++++.+|+..+...-..|
T Consensus 220 ~~~~~~-----------~hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~~~F 269 (283)
T COG2230 220 DVESLR-----------PHYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACAAAF 269 (283)
T ss_pred hHhhhc-----------HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 777662 2244455555555543 33 22344555666888888777766
No 32
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.28 E-value=8.2e-06 Score=80.66 Aligned_cols=145 Identities=18% Similarity=0.224 Sum_probs=87.3
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF 136 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf 136 (360)
...+|+|+|||+|..++.+.+.. +..++..-|+.. ++-...+......++ .-+.|.....-+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~-~mL~~A~~k~~~~~i--~~i~gD~e~lp~ 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSP-HQLAKAKQKEPLKEC--KIIEGDAEDLPF 174 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHHhhhccCC--eEEeccHHhCCC
Confidence 35799999999999877654321 124566667632 222223222111111 113445555567
Q ss_pred CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119 137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
|++++|+++++.++|++.+ ....|+.-.+-|+|||++++.-.
T Consensus 175 ~~~sFDvVIs~~~L~~~~d--------------------------------------~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 175 PTDYADRYVSAGSIEYWPD--------------------------------------PQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCCceeEEEEcChhhhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEEe
Confidence 8899999999999998443 12356677789999999987632
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
..++ ..+..-+.+ .-..+++.+|+.+++++.| |+...++..
T Consensus 217 ~~p~-------------~~~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~~i 257 (340)
T PLN02490 217 VHPT-------------FWLSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLKRI 257 (340)
T ss_pred cCcc-------------hhHHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEEEc
Confidence 2111 011111110 0112579999999999985 987777755
No 33
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.28 E-value=4e-06 Score=78.71 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=63.7
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhC-C---CCCcceEeecCCcc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSL-P---SDRQYYAAGVPGSF 131 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l-~---~~~~~f~~gvpgSF 131 (360)
....+|+|+|||+|..|+.+...+ .|..+|+--|.. .+.-.+.+.- . ..+--|+.| ..
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s-~~ML~~a~~k~~~~~~~~i~~v~~---da 107 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDIS-PGMLEVARKKLKREGLQNIEFVQG---DA 107 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES--HHHHHHHHHHHHHTT--SEEEEE----BT
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCC-HHHHHHHHHHHHhhCCCCeeEEEc---CH
Confidence 345799999999998887763211 133566666654 3333333321 1 011224444 46
Q ss_pred ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119 132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM 211 (360)
Q Consensus 132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 211 (360)
..--||++|+|++++++.||-+.+ ....|+.-.+-|||||++
T Consensus 108 ~~lp~~d~sfD~v~~~fglrn~~d--------------------------------------~~~~l~E~~RVLkPGG~l 149 (233)
T PF01209_consen 108 EDLPFPDNSFDAVTCSFGLRNFPD--------------------------------------RERALREMYRVLKPGGRL 149 (233)
T ss_dssp TB--S-TT-EEEEEEES-GGG-SS--------------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred HHhcCCCCceeEEEHHhhHHhhCC--------------------------------------HHHHHHHHHHHcCCCeEE
Confidence 667799999999999999998543 333566666889999999
Q ss_pred EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhccc----CCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119 212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSF----NLPSYFPTPQELKALLKRNASFSIEKFE 285 (360)
Q Consensus 212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f----~~P~y~ps~eE~~~~ie~~g~F~I~~~e 285 (360)
++.=.++++... ...+|...-..+.=++ -+++..+ .+.+ ..-.-+|+.+|+.+.+++.| |+..+.+
T Consensus 150 ~ile~~~p~~~~-----~~~~~~~y~~~ilP~~-g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~ 219 (233)
T PF01209_consen 150 VILEFSKPRNPL-----LRALYKFYFKYILPLI-GRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYR 219 (233)
T ss_dssp EEEEEEB-SSHH-----HHHHHHH------------------------------------------------------
T ss_pred EEeeccCCCCch-----hhceeeeeeccccccc-ccccccc-cccccccccccccccccccccccccccc-ccccccc
Confidence 988777765311 1112222111111011 1223222 1111 11224689999999999985 8765544
No 34
>PRK06202 hypothetical protein; Provisional
Probab=98.26 E-value=3.2e-05 Score=71.92 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=51.4
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc-ceEeecCCccccc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ-YYAAGVPGSFHNR 134 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~-~f~~gvpgSFy~r 134 (360)
.+..+|+|+|||+|..+..+.... ++ . .|..+|.-.|+-. +.-...+....... -+..+....+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~----~---g~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~l--- 123 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA----RR----D---GLRLEVTAIDPDP-RAVAFARANPRRPGVTFRQAVSDEL--- 123 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH----Hh----C---CCCcEEEEEcCCH-HHHHHHHhccccCCCeEEEEecccc---
Confidence 446799999999999887654332 11 1 2446788888753 44444444322111 1222222211
Q ss_pred cCCCCceeEEEecccccccCC
Q 018119 135 LFPKASINFFHCSYGLQWLSS 155 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~ 155 (360)
-++++++|+|+|+.+|||+..
T Consensus 124 ~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 124 VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred cccCCCccEEEECCeeecCCh
Confidence 136789999999999999754
No 35
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.23 E-value=1.4e-05 Score=72.62 Aligned_cols=164 Identities=18% Similarity=0.258 Sum_probs=91.6
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCc-ceEeecCCccccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQ-YYAAGVPGSFHNR 134 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~-~f~~gvpgSFy~r 134 (360)
...+|+|+|||+|..+..+....- +..+++.-|... ++-...+. ++...+ -|.. +.+...
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~--------------~~~~~~~iD~~~-~~~~~~~~~~~~~~~i~~~~---~d~~~~ 100 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAP--------------DRGKVTGVDFSS-EMLEVAKKKSELPLNIEFIQ---ADAEAL 100 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcC--------------CCceEEEEECCH-HHHHHHHHHhccCCCceEEe---cchhcC
Confidence 457999999999998776643210 114566666632 22111111 111111 1222 345555
Q ss_pred cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
.++++++|+++++..+|+... ...+|+.-.+-|+|||++++.
T Consensus 101 ~~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred CCCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCCcEEEEE
Confidence 578889999999999998533 334788888999999999876
Q ss_pred ecCCCCCCCCCCCchhhHHHHHHHHHHH-HHH--cCCCCHhhhcccCC----CcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 215 VPCLPDGISPGECSVLASADLLGDCLMD-MAK--MGLLSEAQVDSFNL----PSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~-mv~--eG~i~~e~~d~f~~----P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
-.-.+...+ +..+.+.+.. |.. .+..... .+.+.. ..-+++.+|++.++++.| |++...+.+
T Consensus 143 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 211 (223)
T TIGR01934 143 EFSKPANAL---------LKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSL 211 (223)
T ss_pred EecCCCchh---------hHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeee
Confidence 433222111 1222222221 110 0111100 111110 112578999999999996 988777755
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.18 E-value=2.7e-05 Score=74.09 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=83.1
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCCCCcceEeecCCccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPSDRQYYAAGVPGSFH 132 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~~~~~f~~gvpgSFy 132 (360)
..-+|+|+|||+|..++.+.... .+.-+|+--|.-. +.-...+. ..-.+--| +.|.+.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~--------------g~~~~v~gvD~s~-~~l~~A~~~~~~~g~~~v~~---~~~d~~ 138 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV--------------GPTGKVIGVDMTP-EMLAKARANARKAGYTNVEF---RLGEIE 138 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEECCCH-HHHHHHHHHHHHcCCCCEEE---EEcchh
Confidence 35699999999997776543211 1234566666532 12222221 10011112 223454
Q ss_pred cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119 133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA 212 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 212 (360)
.--+|++++|+++|+.++||.... ...|+.-.+-|+|||+++
T Consensus 139 ~l~~~~~~fD~Vi~~~v~~~~~d~--------------------------------------~~~l~~~~r~LkpGG~l~ 180 (272)
T PRK11873 139 ALPVADNSVDVIISNCVINLSPDK--------------------------------------ERVFKEAFRVLKPGGRFA 180 (272)
T ss_pred hCCCCCCceeEEEEcCcccCCCCH--------------------------------------HHHHHHHHHHcCCCcEEE
Confidence 445788899999999999994321 123445557899999999
Q ss_pred EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119 213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP 286 (360)
Q Consensus 213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~ 286 (360)
+.-.......+ +.+...+. +.. |.+ ....+.+|+..+++..| |...++..
T Consensus 181 i~~~~~~~~~~----------~~~~~~~~-~~~-~~~-----------~~~~~~~e~~~~l~~aG-f~~v~i~~ 230 (272)
T PRK11873 181 ISDVVLRGELP----------EEIRNDAE-LYA-GCV-----------AGALQEEEYLAMLAEAG-FVDITIQP 230 (272)
T ss_pred EEEeeccCCCC----------HHHHHhHH-HHh-ccc-----------cCCCCHHHHHHHHHHCC-CCceEEEe
Confidence 87432221111 22222222 111 111 12457889999999885 87766543
No 37
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.10 E-value=8.7e-06 Score=70.58 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=66.9
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCC---CchHHHHhhCCCCCcceEeecCCcccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVS---NDFNALYKSLPSDRQYYAAGVPGSFHN 133 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~---NDFn~lF~~l~~~~~~f~~gvpgSFy~ 133 (360)
+..+|+|+|||+|..++.+... . .|..+++--|+-. +--+..++.+...+--|..+-=-+ ..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~-------~-------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~ 67 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKE-------L-------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LP 67 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHH-------S-------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GC
T ss_pred CCCEEEEecCcCcHHHHHHHHh-------c-------CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cc
Confidence 4689999999999999887641 0 1235556666532 223333333332222244433222 12
Q ss_pred ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
+.++ +.+|+++++.++||+.. ...+|+.-.+-|++||.+++
T Consensus 68 ~~~~-~~~D~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 68 QELE-EKFDIIISNGVLHHFPD--------------------------------------PEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp GCSS-TTEEEEEEESTGGGTSH--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred cccC-CCeeEEEEcCchhhccC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 2245 89999999999999443 34567777789999999998
Q ss_pred EecC
Q 018119 214 IVPC 217 (360)
Q Consensus 214 ~~~g 217 (360)
....
T Consensus 109 ~~~~ 112 (152)
T PF13847_consen 109 SDPN 112 (152)
T ss_dssp EEEE
T ss_pred EECC
Confidence 8755
No 38
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.09 E-value=1.2e-05 Score=73.22 Aligned_cols=91 Identities=21% Similarity=0.359 Sum_probs=62.8
Q ss_pred eeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEe
Q 018119 58 VFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAA 125 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~ 125 (360)
+-+++|+|||.|.||+.+.+ ..++.+.+.-...+ -+++...-|+. ++.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~---l~i~~~~~Dl~--~~~--------------- 90 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG---LDIRTRVADLN--DFD--------------- 90 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGC--CBS---------------
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC---ceeEEEEecch--hcc---------------
Confidence 46999999999999999988 45555544433322 34888888874 221
Q ss_pred ecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018119 126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQEL 205 (360)
Q Consensus 126 gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 205 (360)
+| +.+|+++|..++|.|.. . .+...++...+.+
T Consensus 91 ----------~~-~~yD~I~st~v~~fL~~---~---------------------------------~~~~i~~~m~~~~ 123 (192)
T PF03848_consen 91 ----------FP-EEYDFIVSTVVFMFLQR---E---------------------------------LRPQIIENMKAAT 123 (192)
T ss_dssp -----------T-TTEEEEEEESSGGGS-G---G---------------------------------GHHHHHHHHHHTE
T ss_pred ----------cc-CCcCEEEEEEEeccCCH---H---------------------------------HHHHHHHHHHhhc
Confidence 22 57999999999999764 1 2445677778999
Q ss_pred ccCCeEEEEe
Q 018119 206 ASGGLMALIV 215 (360)
Q Consensus 206 ~pGG~lvl~~ 215 (360)
+|||.+++..
T Consensus 124 ~pGG~~li~~ 133 (192)
T PF03848_consen 124 KPGGYNLIVT 133 (192)
T ss_dssp EEEEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999988854
No 39
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.00 E-value=2.1e-05 Score=71.95 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCC
Q 018119 26 FQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLV 105 (360)
Q Consensus 26 ~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp 105 (360)
+|+.+.....|.+-...-+.. ..+ ....-+|+|+|||+|..++.+.... |..+|+-.|.-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s 73 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWA--ELF---GNDAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVH 73 (202)
T ss_pred chhhhhcccchhhcCCCCCHH--HHc---CCCCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEec
Confidence 455566655666532222211 122 2356799999999999998875421 22334444443
Q ss_pred CCchHHHHhhC---CCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHH
Q 018119 106 SNDFNALYKSL---PSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEV 182 (360)
Q Consensus 106 ~NDFn~lF~~l---~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v 182 (360)
..=-...-+.+ ...+-.|..+---..+.+.+|++++|.++++++.+|..... ... +
T Consensus 74 ~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~-~~~----------~---------- 132 (202)
T PRK00121 74 EPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRH-HKR----------R---------- 132 (202)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccc-ccc----------c----------
Confidence 21111111111 00111122222101123447788999999999888855311 000 0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCC
Q 018119 183 VEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLS 250 (360)
Q Consensus 183 ~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~ 250 (360)
.+...||+.-++-|+|||.+++.... .+.+...+..|.+.|+-.
T Consensus 133 ---------~~~~~~l~~i~~~LkpgG~l~i~~~~---------------~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 133 ---------LVQPEFLALYARKLKPGGEIHFATDW---------------EGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred ---------cCCHHHHHHHHHHcCCCCEEEEEcCC---------------HHHHHHHHHHHHhCcccc
Confidence 12355788888999999999987521 145556666777777643
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.00 E-value=7.5e-06 Score=65.57 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=46.9
Q ss_pred eeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchH---HHHhhCCCCCcceEeecCCccccccCCC
Q 018119 62 ADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFN---ALYKSLPSDRQYYAAGVPGSFHNRLFPK 138 (360)
Q Consensus 62 aDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn---~lF~~l~~~~~~f~~gvpgSFy~rlfP~ 138 (360)
+|+|||+|..+..++... |..+++..|....=.. .-+........-..............+
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPP- 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC--
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccc-
Confidence 599999999998876543 3467777776532110 001111111111222222222222222
Q ss_pred CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119 139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM 211 (360)
Q Consensus 139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 211 (360)
+++|+|+++.+|||+. |+..+|+.-++-|+|||+|
T Consensus 65 ~~fD~V~~~~vl~~l~--------------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLE--------------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhh--------------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 7999999999999971 3556788888999999986
No 41
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.99 E-value=0.00021 Score=65.69 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=24.5
Q ss_pred CCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 258 NLPSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 258 ~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
..++|+++.+|+.++++..| |++.+.+.+
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~ 207 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLV 207 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeecc
Confidence 34678899999999999986 999988765
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.97 E-value=8.2e-05 Score=67.09 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=70.2
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCC--chH-HHHhhCCCCCcceEeecCCccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSN--DFN-ALYKSLPSDRQYYAAGVPGSFHNR 134 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~N--DFn-~lF~~l~~~~~~f~~gvpgSFy~r 134 (360)
..+|+|+|||+|..++.+... .|..+|+.-|...+ ++- ...+...-.+--+..+ +..+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~---------------~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~---d~~~- 103 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIA---------------RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG---RAED- 103 (181)
T ss_pred CCeEEEecCCCCccHHHHHHH---------------CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec---chhh-
Confidence 579999999999988877321 02245555565432 111 1111111111112222 2222
Q ss_pred cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
+.+.+++|+++|.. +|+ +..+++.-.+-|+|||++++.
T Consensus 104 ~~~~~~fD~I~s~~-~~~-----------------------------------------~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 104 FQHEEQFDVITSRA-LAS-----------------------------------------LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccccCCccEEEehh-hhC-----------------------------------------HHHHHHHHHHhcCCCCEEEEE
Confidence 23467899999865 333 122334445669999999987
Q ss_pred ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCC
Q 018119 215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLP 260 (360)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P 260 (360)
. |... ..-+....+.|..+|+ .+-+.+++..|
T Consensus 142 ~-~~~~------------~~~~~~~~e~~~~~~~-~~~~~~~~~~~ 173 (181)
T TIGR00138 142 K-GKKY------------LDEIEEAKRKCQVLGV-EPLEVPPLTGP 173 (181)
T ss_pred c-CCCc------------HHHHHHHHHhhhhcCc-eEeeccccCCC
Confidence 4 2111 1344444566667785 45666888887
No 43
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.95 E-value=3.4e-05 Score=73.01 Aligned_cols=141 Identities=16% Similarity=0.274 Sum_probs=94.2
Q ss_pred eEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCcc-----ceEEecCCCCCchHHHHhhCCCCCc
Q 018119 59 FSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLE-----FQVFFNDLVSNDFNALYKSLPSDRQ 121 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~-----~~v~~nDlp~NDFn~lF~~l~~~~~ 121 (360)
.+|+|+|||.|-.|..+.. ..|++-+++ .++. ++. ..+-+.|.--+|+..
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~d--P~~~~~~~y~l~~~~~~~E~~~~---------- 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMD--PVLEGAIAYRLEYEDTDVEGLTG---------- 157 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcC--chhccccceeeehhhcchhhccc----------
Confidence 7899999999999988765 666666655 3321 111 123344444344333
Q ss_pred ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119 122 YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR 201 (360)
Q Consensus 122 ~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 201 (360)
.+|.|+|+-.+|.. +|...||++-
T Consensus 158 ------------------~fDaVvcsevleHV--------------------------------------~dp~~~l~~l 181 (282)
T KOG1270|consen 158 ------------------KFDAVVCSEVLEHV--------------------------------------KDPQEFLNCL 181 (282)
T ss_pred ------------------ccceeeeHHHHHHH--------------------------------------hCHHHHHHHH
Confidence 38999998888762 3577899999
Q ss_pred HHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeE
Q 018119 202 AQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSI 281 (360)
Q Consensus 202 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I 281 (360)
++-|+|||+++++...|.-..... .+ .+.+.+.-.|-.|.=.-|+ |++++|+..+++.+ ++.+
T Consensus 182 ~~~lkP~G~lfittinrt~lS~~~-----~i--~~~E~vl~ivp~Gth~~ek---------fi~p~e~~~~l~~~-~~~v 244 (282)
T KOG1270|consen 182 SALLKPNGRLFITTINRTILSFAG-----TI--FLAEIVLRIVPKGTHTWEK---------FINPEELTSILNAN-GAQV 244 (282)
T ss_pred HHHhCCCCceEeeehhhhHHHhhc-----cc--cHHHHHHHhcCCCCcCHHH---------cCCHHHHHHHHHhc-Ccch
Confidence 999999999999987765321110 01 1222222356667665555 89999999999998 5777
Q ss_pred EEEE
Q 018119 282 EKFE 285 (360)
Q Consensus 282 ~~~e 285 (360)
+.+.
T Consensus 245 ~~v~ 248 (282)
T KOG1270|consen 245 NDVV 248 (282)
T ss_pred hhhh
Confidence 6655
No 44
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.94 E-value=0.00032 Score=68.01 Aligned_cols=151 Identities=13% Similarity=0.130 Sum_probs=87.3
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC---CCcceEeecCCcc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS---DRQYYAAGVPGSF 131 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~---~~~~f~~gvpgSF 131 (360)
.+..+|+|+|||+|..++.+.+. .|..++..-|+|. .-...+. +.. ..+ +..++|+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~---------------~p~~~~~~~D~~~--~~~~a~~~~~~~gl~~r--v~~~~~d~ 208 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH---------------FPELDSTILNLPG--AIDLVNENAAEKGVADR--MRGIAVDI 208 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH---------------CCCCEEEEEecHH--HHHHHHHHHHhCCccce--EEEEecCc
Confidence 34579999999999766655332 2567787779862 2222221 111 112 34566789
Q ss_pred ccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119 132 HNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM 211 (360)
Q Consensus 132 y~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 211 (360)
+..-+|. .|+++.+..+|-... + +-..+|+.-++-|+|||++
T Consensus 209 ~~~~~~~--~D~v~~~~~lh~~~~--~----------------------------------~~~~il~~~~~~L~pgG~l 250 (306)
T TIGR02716 209 YKESYPE--ADAVLFCRILYSANE--Q----------------------------------LSTIMCKKAFDAMRSGGRL 250 (306)
T ss_pred cCCCCCC--CCEEEeEhhhhcCCh--H----------------------------------HHHHHHHHHHHhcCCCCEE
Confidence 8766775 599998888883221 0 1234677777899999999
Q ss_pred EEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEE
Q 018119 212 ALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIE 282 (360)
Q Consensus 212 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~ 282 (360)
++.=.-.++... ..+..+...+. .-|+.. .+.-+++.+|+.+++++.| |+..
T Consensus 251 ~i~d~~~~~~~~-------~~~~~~~~~~~---~~~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v 302 (306)
T TIGR02716 251 LILDMVIDDPEN-------PNFDYLSHYIL---GAGMPF--------SVLGFKEQARYKEILESLG-YKDV 302 (306)
T ss_pred EEEEeccCCCCC-------chhhHHHHHHH---Hccccc--------ccccCCCHHHHHHHHHHcC-CCee
Confidence 887322221111 01122222221 122210 1123566899999999995 8644
No 45
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.93 E-value=0.00077 Score=61.93 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119 259 LPSYFPTPQELKALLKRNASFSIEKFEPLA 288 (360)
Q Consensus 259 ~P~y~ps~eE~~~~ie~~g~F~I~~~e~~~ 288 (360)
.+.+..+.+|+.++++..| |++...+.+.
T Consensus 188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 216 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAG-FKVVRTERIS 216 (230)
T ss_pred CCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence 4567789999999999985 9998887764
No 46
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.91 E-value=6.6e-06 Score=76.37 Aligned_cols=139 Identities=20% Similarity=0.303 Sum_probs=90.7
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHH---------HHhhhcCCCCccc--eEEecCCCCCchHHHHhhCCCCCcceEee
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVK---------LKCQSYGHDKLEF--QVFFNDLVSNDFNALYKSLPSDRQYYAAG 126 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~---------~~~~~~~~~~p~~--~v~~nDlp~NDFn~lF~~l~~~~~~f~~g 126 (360)
.-..+|+|||-|.-+-.+...-|+.|- +.|+. ...|++ .-+.-|-..-|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~--~qdp~i~~~~~v~DEE~Ld------------------ 132 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD--AQDPSIETSYFVGDEEFLD------------------ 132 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc--cCCCceEEEEEecchhccc------------------
Confidence 457899999999988887765443321 11211 112332 23334433323
Q ss_pred cCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119 127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA 206 (360)
Q Consensus 127 vpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 206 (360)
|-.+|+|+++||.++||..+.|.... .....||
T Consensus 133 ---------f~ens~DLiisSlslHW~NdLPg~m~--------------------------------------~ck~~lK 165 (325)
T KOG2940|consen 133 ---------FKENSVDLIISSLSLHWTNDLPGSMI--------------------------------------QCKLALK 165 (325)
T ss_pred ---------ccccchhhhhhhhhhhhhccCchHHH--------------------------------------HHHHhcC
Confidence 45699999999999999999885432 2347899
Q ss_pred cCCeEEEEecCCCCCCCCCCCchhhHHHH-HHHHHHHHHHcCCCCHhhhcccCCCcccC--CHHHHHHHHHhCCceeEEE
Q 018119 207 SGGLMALIVPCLPDGISPGECSVLASADL-LGDCLMDMAKMGLLSEAQVDSFNLPSYFP--TPQELKALLKRNASFSIEK 283 (360)
Q Consensus 207 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~y~p--s~eE~~~~ie~~g~F~I~~ 283 (360)
|.|.++..++|-+. +|++ .+-.|.+|..+|-|++ -.-| ...++-.++...| |....
T Consensus 166 PDg~FiasmlggdT-----------LyELR~slqLAelER~GGiSp---------hiSPf~qvrDiG~LL~rAG-F~m~t 224 (325)
T KOG2940|consen 166 PDGLFIASMLGGDT-----------LYELRCSLQLAELEREGGISP---------HISPFTQVRDIGNLLTRAG-FSMLT 224 (325)
T ss_pred CCccchhHHhcccc-----------HHHHHHHhhHHHHHhccCCCC---------CcChhhhhhhhhhHHhhcC-cccce
Confidence 99999999987542 3453 4455679999999863 3333 4567777787775 76544
Q ss_pred E
Q 018119 284 F 284 (360)
Q Consensus 284 ~ 284 (360)
+
T Consensus 225 v 225 (325)
T KOG2940|consen 225 V 225 (325)
T ss_pred e
Confidence 3
No 47
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.89 E-value=9.6e-05 Score=66.83 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=23.3
Q ss_pred cccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119 261 SYFPTPQELKALLKRNASFSIEKFEPLA 288 (360)
Q Consensus 261 ~y~ps~eE~~~~ie~~g~F~I~~~e~~~ 288 (360)
..+++.+|+.+++++.| |+|.....+.
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 45789999999999995 9999888773
No 48
>PRK06922 hypothetical protein; Provisional
Probab=97.86 E-value=4e-05 Score=81.10 Aligned_cols=114 Identities=20% Similarity=0.126 Sum_probs=67.0
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC-CCc-ceEeecCCccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS-DRQ-YYAAGVPGSFHNR 134 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~-~~~-~f~~gvpgSFy~r 134 (360)
.-+|+|+|||+|..+..+... .|..+|+--|+..+ .=...+. ++. ..+ .+..+.... ...
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~---------------~P~~kVtGIDIS~~-MLe~Ararl~~~g~~ie~I~gDa~d-Lp~ 481 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE---------------TEDKRIYGIDISEN-VIDTLKKKKQNEGRSWNVIKGDAIN-LSS 481 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh---------------CCCCEEEEEECCHH-HHHHHHHHhhhcCCCeEEEEcchHh-Ccc
Confidence 469999999999766554321 13456666666531 1111111 110 011 122222111 112
Q ss_pred cCCCCceeEEEeccccccc-CCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 135 LFPKASINFFHCSYGLQWL-SSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWL-S~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
.||++++|++++++++||+ +.+|..-. .++ .+|...+|+.-.+-|+|||++++
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~---------------------~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGK-----KFN---------------------HEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccc-----ccc---------------------HHHHHHHHHHHHHHcCCCcEEEE
Confidence 3788999999999999974 44542110 011 24678889999999999999999
Q ss_pred E
Q 018119 214 I 214 (360)
Q Consensus 214 ~ 214 (360)
.
T Consensus 536 ~ 536 (677)
T PRK06922 536 R 536 (677)
T ss_pred E
Confidence 6
No 49
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.84 E-value=5.2e-05 Score=69.19 Aligned_cols=93 Identities=16% Similarity=0.243 Sum_probs=68.8
Q ss_pred CceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY 123 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f 123 (360)
+..-++.|+|||.|..|..+.. ..|+.-++++.. .|.+++..-|+|.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~----~~~V~~~~~dvp~----------------- 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG----LPHVEWIQADVPE----------------- 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC----CCCeEEEECcCCC-----------------
Confidence 5578899999999999999865 566666666543 4679999999983
Q ss_pred EeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119 124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ 203 (360)
Q Consensus 124 ~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 203 (360)
..|..++|+++.+-.+++|+.. .|+..++..-.+
T Consensus 101 -----------~~P~~~FDLIV~SEVlYYL~~~-----------------------------------~~L~~~l~~l~~ 134 (201)
T PF05401_consen 101 -----------FWPEGRFDLIVLSEVLYYLDDA-----------------------------------EDLRAALDRLVA 134 (201)
T ss_dssp --------------SS-EEEEEEES-GGGSSSH-----------------------------------HHHHHHHHHHHH
T ss_pred -----------CCCCCCeeEEEEehHhHcCCCH-----------------------------------HHHHHHHHHHHH
Confidence 2478999999999999998761 357788888889
Q ss_pred HhccCCeEEEEe
Q 018119 204 ELASGGLMALIV 215 (360)
Q Consensus 204 EL~pGG~lvl~~ 215 (360)
-|.|||.||+.-
T Consensus 135 ~L~pgG~LV~g~ 146 (201)
T PF05401_consen 135 ALAPGGHLVFGH 146 (201)
T ss_dssp TEEEEEEEEEEE
T ss_pred HhCCCCEEEEEE
Confidence 999999999964
No 50
>PRK05785 hypothetical protein; Provisional
Probab=97.84 E-value=0.00016 Score=67.48 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=47.0
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCC
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFP 137 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP 137 (360)
.-+|+|+|||+|.++..+.... ..+|+--|+. -+.=.+.+.- .-++ -+++...-||
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~----------------~~~v~gvD~S-~~Ml~~a~~~----~~~~---~~d~~~lp~~ 107 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF----------------KYYVVALDYA-ENMLKMNLVA----DDKV---VGSFEALPFR 107 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc----------------CCEEEEECCC-HHHHHHHHhc----cceE---EechhhCCCC
Confidence 5699999999998887653321 1345555542 2222222221 1122 3456666789
Q ss_pred CCceeEEEecccccccCC
Q 018119 138 KASINFFHCSYGLQWLSS 155 (360)
Q Consensus 138 ~~S~h~~~Ss~alHWLS~ 155 (360)
++|+|+++|+++|||+.+
T Consensus 108 d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 108 DKSFDVVMSSFALHASDN 125 (226)
T ss_pred CCCEEEEEecChhhccCC
Confidence 999999999999999654
No 51
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.81 E-value=0.00012 Score=70.01 Aligned_cols=115 Identities=17% Similarity=0.305 Sum_probs=66.2
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH----------hhCCCC--Ccce
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY----------KSLPSD--RQYY 123 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF----------~~l~~~--~~~f 123 (360)
..+++|.|.|||+|--+..+.-.+.+.... . ..+.++|+-.|+-.. -=... +.+|+. ..||
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~----~--~~~~~~I~g~Dis~~-~L~~Ar~~~y~~~~~~~~~~~~~~~yf 170 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK----A--REPDVKILATDIDLK-ALEKARAGIYPERELEDLPKALLARYF 170 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhh----c--CCCCeEEEEEECCHH-HHHHHHcCCCCHHHHhcCCHHHHhhhE
Confidence 346999999999997544332222222111 0 123577887777431 11111 122211 1344
Q ss_pred EeecCC-----------------ccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHH
Q 018119 124 AAGVPG-----------------SFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAY 186 (360)
Q Consensus 124 ~~gvpg-----------------SFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay 186 (360)
... +| ..-+..+|.+++|+|+|.++|||++. |
T Consensus 171 ~~~-~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~----------------------------- 219 (264)
T smart00138 171 SRV-EDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-P----------------------------- 219 (264)
T ss_pred EeC-CCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-H-----------------------------
Confidence 321 12 12233356889999999999999754 1
Q ss_pred HHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 187 SAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 187 ~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
+....|+.=++-|+|||.|++.
T Consensus 220 ------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 220 ------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ------HHHHHHHHHHHHhCCCeEEEEE
Confidence 2344677777899999999874
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.80 E-value=4.7e-05 Score=61.36 Aligned_cols=98 Identities=23% Similarity=0.318 Sum_probs=52.9
Q ss_pred EeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC--CCCcceEeecCCccccccCCC
Q 018119 61 IADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQYYAAGVPGSFHNRLFPK 138 (360)
Q Consensus 61 IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~--~~~~~f~~gvpgSFy~rlfP~ 138 (360)
|+|+|||+|.++..+.... +. .|+.++..-|+-.+=....=+... ..+--|..+.... --++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~-----------~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~---l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA-----------GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD---LPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC---HHHHS
T ss_pred CEEeecCCcHHHHHHHHHh-hh-----------cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH---CcccC
Confidence 7999999999999887653 10 122444444443211111001110 0011122222211 12466
Q ss_pred CceeEEEeccc-ccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119 139 ASINFFHCSYG-LQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG 209 (360)
Q Consensus 139 ~S~h~~~Ss~a-lHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 209 (360)
+++|+++++.+ +|++++ +++..+|+.-++-|+|||
T Consensus 66 ~~~D~v~~~~~~~~~~~~------------------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLSP------------------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGSSH------------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCCCH------------------------------------HHHHHHHHHHHHHhCCCC
Confidence 79999999766 998665 357778899999999998
No 53
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.79 E-value=0.00021 Score=66.24 Aligned_cols=131 Identities=21% Similarity=0.224 Sum_probs=82.3
Q ss_pred hHHHhhHH---HHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHH---------HHHHHHHH
Q 018119 19 SYARNSEF---QSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQN---------IIDSVKLK 86 (360)
Q Consensus 19 sY~~nS~~---Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~---------ii~~i~~~ 86 (360)
-|.+||.+ |....+.++.++. ++ .+++--|+|+|||+|--+-.+-+. .-.++...
T Consensus 22 kYt~nsri~~IQ~em~eRaLELLa--------lp-----~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 22 KYTQNSRIVLIQAEMAERALELLA--------LP-----GPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQA 88 (270)
T ss_pred hccccceeeeehHHHHHHHHHHhh--------CC-----CCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHH
Confidence 58899986 4555555544432 32 346888999999999766444220 00111111
Q ss_pred hhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCC
Q 018119 87 CQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSP 166 (360)
Q Consensus 87 ~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~ 166 (360)
... .-|=-+.+.|+- -+--|++.+||-++|-.|++||=..-+....
T Consensus 89 ~~~----e~egdlil~DMG--------------------------~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~---- 134 (270)
T KOG1541|consen 89 VER----ELEGDLILCDMG--------------------------EGLPFRPGTFDGVISISAVQWLCNADKSLHV---- 134 (270)
T ss_pred HHh----hhhcCeeeeecC--------------------------CCCCCCCCccceEEEeeeeeeecccCccccC----
Confidence 000 001123444442 3456899999999999999998765433211
Q ss_pred CccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCC
Q 018119 167 AYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLP 219 (360)
Q Consensus 167 ~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~ 219 (360)
=++.+.+|+..=..-|++|++-|+.|--..
T Consensus 135 -----------------------P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 135 -----------------------PKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred -----------------------hHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 134588899999999999999999995444
No 54
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.76 E-value=0.00034 Score=64.50 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=64.1
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccc---
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNR--- 134 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~r--- 134 (360)
.-+|+|+|||+|.-|..+++..- +.-+|+--|+-. .+ .++ .-.+.. |.+...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~--------------~~~~V~aVDi~~--~~----~~~--~v~~i~---~D~~~~~~~ 106 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIG--------------DKGRVIACDILP--MD----PIV--GVDFLQ---GDFRDELVL 106 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcC--------------CCceEEEEeccc--cc----CCC--CcEEEe---cCCCChHHH
Confidence 45899999999998776654321 223555555522 11 111 112222 234442
Q ss_pred -----cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119 135 -----LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG 209 (360)
Q Consensus 135 -----lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 209 (360)
-++.+++|+|+|+.+.||... |. .| . ..+ .......|+.-.+-|+|||
T Consensus 107 ~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~----~~~-~~~~~~~L~~~~~~LkpGG 159 (209)
T PRK11188 107 KALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I----PRA-MYLVELALDMCRDVLAPGG 159 (209)
T ss_pred HHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H----HHH-HHHHHHHHHHHHHHcCCCC
Confidence 257789999999999999432 11 00 0 000 1114568888889999999
Q ss_pred eEEEEecC
Q 018119 210 LMALIVPC 217 (360)
Q Consensus 210 ~lvl~~~g 217 (360)
.+++....
T Consensus 160 ~~vi~~~~ 167 (209)
T PRK11188 160 SFVVKVFQ 167 (209)
T ss_pred EEEEEEec
Confidence 99996543
No 55
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.74 E-value=0.00033 Score=64.17 Aligned_cols=95 Identities=18% Similarity=0.267 Sum_probs=55.6
Q ss_pred CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119 138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC 217 (360)
Q Consensus 138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 217 (360)
++++|+++++.++|+... ...+|+.-.+-|+|||.+++....
T Consensus 110 ~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVPD--------------------------------------PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCCccEEEehhHHHhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 378999999999988432 334677777889999999887543
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 218 LPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
+... ......+. .++. .+..... ......+.+.+++.+++++. +|+|..+..+
T Consensus 152 ~~~~--------~~~~~~~~---~~~~-~~~~~~~----~~~~~~~~~~~~l~~~l~~~-G~~i~~~~~~ 204 (224)
T TIGR01983 152 RTPK--------SYLLAIVG---AEYI-LRIVPKG----THDWEKFIKPSELTSWLESA-GLRVKDVKGL 204 (224)
T ss_pred CCch--------HHHHHHHh---hhhh-hhcCCCC----cCChhhcCCHHHHHHHHHHc-CCeeeeeeeE
Confidence 3210 00111110 0111 1111110 00111245889999999988 5999877743
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.71 E-value=6.5e-05 Score=77.19 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=60.8
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC-C-CcceEeecCCcccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS-D-RQYYAAGVPGSFHNRL 135 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~-~-~~~f~~gvpgSFy~rl 135 (360)
.-+|+|+|||+|.+|..+.... -+|+-.|.-. .+=..-+.+.. . +--|..+.-... ..-
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~-----------------~~v~giD~s~-~~l~~a~~~~~~~~~i~~~~~d~~~~-~~~ 98 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA-----------------GQVIALDFIE-SVIKKNESINGHYKNVKFMCADVTSP-DLN 98 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC-----------------CEEEEEeCCH-HHHHHHHHHhccCCceEEEEeccccc-ccC
Confidence 3589999999999998875421 1233333211 01000011110 0 112333221111 123
Q ss_pred CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
+|++++|+|+|+.++||++. .++..+|+..++-|+|||+|++.
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 68899999999999999754 13566888888999999999875
No 57
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.70 E-value=0.00094 Score=61.78 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119 137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
+.+.+|+++++..+++... ...+|+...+-|+|||+|++...
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPD--------------------------------------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cCCCccEEEEhhHhhccCC--------------------------------------HHHHHHHHHHHcCCCcEEEEEec
Confidence 4578999999988888432 23467777788999999998876
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 217 CLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 217 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
++... ...+..... +.+..+.- . .......+.+.+|+.+++++.| |++....-+
T Consensus 153 ~~~~~--------~~~~~~~~~---~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~~ 206 (233)
T PRK05134 153 NRNLK--------SYLLAIVGA---EYVLRMLP-K----GTHDYKKFIKPSELAAWLRQAG-LEVQDITGL 206 (233)
T ss_pred CCChH--------HHHHHHhhH---HHHhhhcC-c----ccCchhhcCCHHHHHHHHHHCC-CeEeeeeeE
Confidence 53211 011111111 11111111 0 0011224678999999999885 998877633
No 58
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.66 E-value=0.0005 Score=62.35 Aligned_cols=102 Identities=20% Similarity=0.351 Sum_probs=61.3
Q ss_pred eeEEeeecCCCCCccHHHHHH--------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119 58 VFSIADLGCSVGPNTFNAVQN--------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY 123 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~--------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f 123 (360)
.-+|+|+|||+|..++.+... .++...++....+ ...+.+...|..
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~--l~ni~~i~~d~~------------------ 76 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG--LKNLHVLCGDAN------------------ 76 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC--CCCEEEEccCHH------------------
Confidence 458999999999998877653 1222222222111 112444444432
Q ss_pred EeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119 124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ 203 (360)
Q Consensus 124 ~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 203 (360)
.+-..++|++++|.+++++..+|..+. .... ++- ...||+.-++
T Consensus 77 ------~~~~~~~~~~~~d~v~~~~pdpw~k~~-h~~~----------r~~-------------------~~~~l~~~~r 120 (194)
T TIGR00091 77 ------ELLDKFFPDGSLSKVFLNFPDPWPKKR-HNKR----------RIT-------------------QPHFLKEYAN 120 (194)
T ss_pred ------HHHHhhCCCCceeEEEEECCCcCCCCC-cccc----------ccC-------------------CHHHHHHHHH
Confidence 111234677899999999999995431 1000 110 2457888889
Q ss_pred HhccCCeEEEEe
Q 018119 204 ELASGGLMALIV 215 (360)
Q Consensus 204 EL~pGG~lvl~~ 215 (360)
-|+|||.+++..
T Consensus 121 ~LkpgG~l~~~t 132 (194)
T TIGR00091 121 VLKKGGVIHFKT 132 (194)
T ss_pred HhCCCCEEEEEe
Confidence 999999998875
No 59
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.64 E-value=0.00028 Score=68.59 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=67.4
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH-hhCCC-CCcceEeecCCcccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY-KSLPS-DRQYYAAGVPGSFHNRL 135 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF-~~l~~-~~~~f~~gvpgSFy~rl 135 (360)
..+|+|+|||+|..|..+++.... ..+++--|+.. ++=... +.+.. .+..=+.++-|.|...+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~--------------~~~~~~iDiS~-~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQ--------------PARYVPIDISA-DALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhcc--------------CCeEEEEECCH-HHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 468999999999999988776531 14455556542 331111 22211 11122233444555422
Q ss_pred -CCCC----ceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119 136 -FPKA----SINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL 210 (360)
Q Consensus 136 -fP~~----S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 210 (360)
+|.. ...++++..++|+++. .|...||+.-++-|+|||+
T Consensus 129 ~~~~~~~~~~~~~~~~gs~~~~~~~------------------------------------~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 129 ALPPEPAAGRRLGFFPGSTIGNFTP------------------------------------EEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred hhhcccccCCeEEEEecccccCCCH------------------------------------HHHHHHHHHHHHhcCCCCE
Confidence 3332 4557777778888642 2355688888899999999
Q ss_pred EEEEecCCCC
Q 018119 211 MALIVPCLPD 220 (360)
Q Consensus 211 lvl~~~g~~~ 220 (360)
|++.+-...+
T Consensus 173 ~lig~d~~~~ 182 (301)
T TIGR03438 173 LLIGVDLVKD 182 (301)
T ss_pred EEEeccCCCC
Confidence 9988755443
No 60
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.64 E-value=0.00011 Score=69.27 Aligned_cols=172 Identities=19% Similarity=0.259 Sum_probs=98.7
Q ss_pred CCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC----CCcceE----ee
Q 018119 55 SSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS----DRQYYA----AG 126 (360)
Q Consensus 55 ~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~----~~~~f~----~g 126 (360)
+.+.++++|.+||+|-.|+.++..+-+. .+ .-+-+|...|. |.---.+.. .++|+. .-
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~----~~-----~~~~~V~v~Di-----np~mL~vgkqRa~~~~l~~~~~~~w 163 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQ----FG-----DRESKVTVLDI-----NPHMLAVGKQRAKKRPLKASSRVEW 163 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccc----cC-----CCCceEEEEeC-----CHHHHHHHHHHHhhcCCCcCCceEE
Confidence 3556999999999999999987655421 11 12355666555 332222111 122221 12
Q ss_pred cCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119 127 VPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA 206 (360)
Q Consensus 127 vpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 206 (360)
+.|--..--||++++|...+++.+--.-++++ ...+|| +-||
T Consensus 164 ~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k----------------------~l~EAY----------------RVLK 205 (296)
T KOG1540|consen 164 VEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK----------------------ALREAY----------------RVLK 205 (296)
T ss_pred EeCCcccCCCCCCcceeEEEecceecCCCHHH----------------------HHHHHH----------------HhcC
Confidence 33447777899999999999998876444332 245566 7799
Q ss_pred cCCeEEEEecCCCCCCCCCCCchhhHHH---HHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEE
Q 018119 207 SGGLMALIVPCLPDGISPGECSVLASAD---LLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEK 283 (360)
Q Consensus 207 pGG~lvl~~~g~~~~~~~~~~~~~~~~~---~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~ 283 (360)
|||++.|.-+..-+..+.........++ .+.+.+....+.+..=-|-+. -+|+.||+...|++.| |....
T Consensus 206 pGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG-F~~~~ 278 (296)
T KOG1540|consen 206 PGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG-FSSVN 278 (296)
T ss_pred CCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC-Ccccc
Confidence 9999998866655421111001111222 223333332222222111111 2689999999999985 87765
Q ss_pred -EE
Q 018119 284 -FE 285 (360)
Q Consensus 284 -~e 285 (360)
+|
T Consensus 279 ~ye 281 (296)
T KOG1540|consen 279 GYE 281 (296)
T ss_pred ccc
Confidence 54
No 61
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.60 E-value=0.001 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhccCCeEEEEe
Q 018119 194 IESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
+..+++.-++.|+|||++++.+
T Consensus 101 ~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 101 LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 3467888899999999999986
No 62
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00048 Score=65.18 Aligned_cols=114 Identities=21% Similarity=0.244 Sum_probs=75.5
Q ss_pred CceeEEeeecCCCCCccHHHHHH--------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQN--------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQ 121 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~--------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~ 121 (360)
+..-+|+|+|||.|.-++.+.+. ..+..++-.. .++-...++|+.-|+ ++|.. .
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~-ln~l~~ri~v~~~Di--~~~~~---~------ 110 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA-LNPLEERIQVIEADI--KEFLK---A------ 110 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHH-hCcchhceeEehhhH--HHhhh---c------
Confidence 44899999999999999999875 2222222221 111123477777766 34433 2
Q ss_pred ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119 122 YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR 201 (360)
Q Consensus 122 ~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 201 (360)
++..++|+|+|| |+--. -... ..+.+..+..+.+..-++..+++.-
T Consensus 111 --------------~~~~~fD~Ii~N---------PPyf~---------~~~~--~~~~~~~~~Ar~e~~~~le~~i~~a 156 (248)
T COG4123 111 --------------LVFASFDLIICN---------PPYFK---------QGSR--LNENPLRAIARHEITLDLEDLIRAA 156 (248)
T ss_pred --------------ccccccCEEEeC---------CCCCC---------Cccc--cCcChhhhhhhhhhcCCHHHHHHHH
Confidence 222489999985 43322 1122 2334566666778888999999999
Q ss_pred HHHhccCCeEEEEe
Q 018119 202 AQELASGGLMALIV 215 (360)
Q Consensus 202 a~EL~pGG~lvl~~ 215 (360)
++-|+|||++.++.
T Consensus 157 ~~~lk~~G~l~~V~ 170 (248)
T COG4123 157 AKLLKPGGRLAFVH 170 (248)
T ss_pred HHHccCCCEEEEEe
Confidence 99999999998875
No 63
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.49 E-value=0.0017 Score=61.01 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=37.9
Q ss_pred CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119 137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
+++|||+|.+.-|+||. |+.+|.+.-.+-|++.|.+++...
T Consensus 97 ~e~SVDlI~~Aqa~HWF---------------------------------------dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWF---------------------------------------DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred CCcceeeehhhhhHHhh---------------------------------------chHHHHHHHHHHcCCCCCEEEEEE
Confidence 47999999999999992 578899999999999997777765
Q ss_pred CCCCC
Q 018119 217 CLPDG 221 (360)
Q Consensus 217 g~~~~ 221 (360)
=+++.
T Consensus 138 Y~dd~ 142 (261)
T KOG3010|consen 138 YNDDF 142 (261)
T ss_pred ccCCC
Confidence 55443
No 64
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.47 E-value=0.0032 Score=61.82 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=22.5
Q ss_pred cccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119 261 SYFPTPQELKALLKRNASFSIEKFEPLA 288 (360)
Q Consensus 261 ~y~ps~eE~~~~ie~~g~F~I~~~e~~~ 288 (360)
.|+.+.+|++++++..| |+|.+.+...
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 46679999999999996 9998877653
No 65
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.47 E-value=0.00039 Score=66.34 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=42.3
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccC
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLF 136 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlf 136 (360)
...+|+|+|||+|..+..+....- . ....+++-.|+..+=-...-+..+ +--|..+ +..+-.|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~----~--------~~~~~v~giD~s~~~l~~A~~~~~--~~~~~~~---d~~~lp~ 147 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALP----E--------ITTMQLFGLDISKVAIKYAAKRYP--QVTFCVA---SSHRLPF 147 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcc----c--------ccCCeEEEECCCHHHHHHHHHhCC--CCeEEEe---ecccCCC
Confidence 346899999999998877654321 0 011456667764321111111111 1113332 3444458
Q ss_pred CCCceeEEEeccc
Q 018119 137 PKASINFFHCSYG 149 (360)
Q Consensus 137 P~~S~h~~~Ss~a 149 (360)
|++++|+|+|..+
T Consensus 148 ~~~sfD~I~~~~~ 160 (272)
T PRK11088 148 ADQSLDAIIRIYA 160 (272)
T ss_pred cCCceeEEEEecC
Confidence 8999999998654
No 66
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.44 E-value=0.00079 Score=59.29 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=38.2
Q ss_pred cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
-+|++++|++++++++||+.+ ...+|+.-++-|+|||++++.
T Consensus 39 p~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 39 PFDDCEFDAVTMGYGLRNVVD--------------------------------------RLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CCCCCCeeEEEecchhhcCCC--------------------------------------HHHHHHHHHHHcCcCeEEEEE
Confidence 367789999999999999632 345677778999999999988
Q ss_pred ecCCCC
Q 018119 215 VPCLPD 220 (360)
Q Consensus 215 ~~g~~~ 220 (360)
-.+.++
T Consensus 81 d~~~~~ 86 (160)
T PLN02232 81 DFNKSN 86 (160)
T ss_pred ECCCCC
Confidence 666544
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.43 E-value=0.0015 Score=58.54 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=17.3
Q ss_pred ceeEEeeecCCCCCccHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
..-+|+|+|||+|..++.+..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~ 51 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAAL 51 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHH
Confidence 346899999999999887753
No 68
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.42 E-value=0.0014 Score=59.57 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhccCCeEEEEe
Q 018119 194 IESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
+..|++..++-|+|||++++..
T Consensus 124 ~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 124 LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEe
Confidence 4568888889999999999885
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.39 E-value=0.0019 Score=57.31 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=58.2
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC--CCcceEeecCCcccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS--DRQYYAAGVPGSFHNRL 135 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~--~~~~f~~gvpgSFy~rl 135 (360)
.-+|+|+|||+|.-++.+... .|...|...|.-.+=....=+++.. ... +..+....+..+
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~---------------~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~--v~~~~~d~~~~~ 94 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKR---------------GPDAKVTAVDINPDALELAKRNAERNGLEN--VEVVQSDLFEAL 94 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHT---------------STCEEEEEEESBHHHHHHHHHHHHHTTCTT--EEEEESSTTTTC
T ss_pred CCeEEEecCChHHHHHHHHHh---------------CCCCEEEEEcCCHHHHHHHHHHHHhcCccc--cccccccccccc
Confidence 467999999999998887541 1334455555532222221111110 011 222223344433
Q ss_pred CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119 136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
|++++|+++|+-=+|+-.. +- ..-+..|++.=.+-|+|||.+++..
T Consensus 95 -~~~~fD~Iv~NPP~~~~~~-------------------------~~--------~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 95 -PDGKFDLIVSNPPFHAGGD-------------------------DG--------LDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp -CTTCEEEEEE---SBTTSH-------------------------CH--------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cccceeEEEEccchhcccc-------------------------cc--------hhhHHHHHHHHHHhccCCCEEEEEe
Confidence 3689999999755444111 00 0124567777789999999998876
No 70
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.39 E-value=0.0035 Score=58.07 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHH
Q 018119 194 IESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALL 273 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~i 273 (360)
...+++.-.+-|+|||++++.....+.... .-|-|.-+.+|+++.+
T Consensus 131 R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----------------------------------~gpp~~~~~~eL~~~f 176 (213)
T TIGR03840 131 RQRYAAHLLALLPPGARQLLITLDYDQSEM----------------------------------AGPPFSVSPAEVEALY 176 (213)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----------------------------------CCcCCCCCHHHHHHHh
Confidence 345677888999999987776554432100 1144678899999988
Q ss_pred HhCCceeEEEEEEec
Q 018119 274 KRNASFSIEKFEPLA 288 (360)
Q Consensus 274 e~~g~F~I~~~e~~~ 288 (360)
.. .|+|+.++..+
T Consensus 177 ~~--~~~i~~~~~~~ 189 (213)
T TIGR03840 177 GG--HYEIELLESRD 189 (213)
T ss_pred cC--CceEEEEeecc
Confidence 63 48888887553
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.39 E-value=0.00087 Score=61.80 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=17.1
Q ss_pred ceeEEeeecCCCCCccHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
...+|+|+|||+|..|..+..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~ 96 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAE 96 (212)
T ss_pred CcCEEEEECCcccHHHHHHHH
Confidence 357999999999999976643
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.38 E-value=0.0012 Score=60.54 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=16.7
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
..+|+|+|||+|..|..+..
T Consensus 73 ~~~VLDiG~GsG~~~~~la~ 92 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAE 92 (205)
T ss_pred CCEEEEECcCccHHHHHHHH
Confidence 46899999999999976644
No 73
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.38 E-value=0.0025 Score=59.45 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=69.2
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL 135 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl 135 (360)
++.-+|+|+|+|+|..+..++ ++ .|..++..-|||.. ........+ +.-+||.|+ .-
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~v-----~~~~~~~~r--v~~~~gd~f-~~ 155 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALA--------RA-------YPNLRATVFDLPEV-----IEQAKEADR--VEFVPGDFF-DP 155 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHH--------HH-------STTSEEEEEE-HHH-----HCCHHHTTT--EEEEES-TT-TC
T ss_pred cCccEEEeccCcchHHHHHHH--------HH-------CCCCcceeeccHhh-----hhccccccc--cccccccHH-hh
Confidence 345689999999998776552 22 37899999999951 111111122 334788899 88
Q ss_pred CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccC--CeEEE
Q 018119 136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASG--GLMAL 213 (360)
Q Consensus 136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG--G~lvl 213 (360)
+|. .|+++-...||=.+. +|-...|+.-++.|+|| |++++
T Consensus 156 ~P~--~D~~~l~~vLh~~~d------------------------------------~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 156 LPV--ADVYLLRHVLHDWSD------------------------------------EDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp CSS--ESEEEEESSGGGS-H------------------------------------HHHHHHHHHHHHHSEECTTEEEEE
T ss_pred hcc--ccceeeehhhhhcch------------------------------------HHHHHHHHHHHHHhCCCCCCeEEE
Confidence 997 999999999983222 23456888999999999 99988
Q ss_pred EecCCC
Q 018119 214 IVPCLP 219 (360)
Q Consensus 214 ~~~g~~ 219 (360)
.=.-.+
T Consensus 198 ~e~~~~ 203 (241)
T PF00891_consen 198 IEMVLP 203 (241)
T ss_dssp EEEEEC
T ss_pred EeeccC
Confidence 844333
No 74
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.36 E-value=0.0018 Score=59.49 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=44.5
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCcccccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNRL 135 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~rl 135 (360)
..-+|+|+|||+|.++..+.... |..+++--|+-. +.=...+. ++. .-+. .|+... .
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~---------------~~~~v~giDiS~-~~l~~A~~~~~~--~~~~---~~d~~~-~ 100 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL---------------PFKHIYGVEINE-YAVEKAKAYLPN--INII---QGSLFD-P 100 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC---------------CCCeEEEEECCH-HHHHHHHhhCCC--CcEE---EeeccC-C
Confidence 34679999999998887764321 123444445432 11122221 221 1122 233444 6
Q ss_pred CCCCceeEEEecccccccC
Q 018119 136 FPKASINFFHCSYGLQWLS 154 (360)
Q Consensus 136 fP~~S~h~~~Ss~alHWLS 154 (360)
+|++++|+|+++.+||+++
T Consensus 101 ~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCCCCEEEEEECChhhhCC
Confidence 7889999999999998753
No 75
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.34 E-value=0.0015 Score=58.26 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=62.8
Q ss_pred eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCCCCcceEeecCCccccccCC
Q 018119 59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPSDRQYYAAGVPGSFHNRLFP 137 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~~~~~f~~gvpgSFy~rlfP 137 (360)
-+|+|+|||+|..++.+... .+ +|+-.|+-. ++-...+. +... .+-+.-+-+.++..+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~---------------~~--~v~~vD~s~-~~~~~a~~~~~~~-~~~~~~~~~d~~~~~-- 79 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGK---------------GK--CILTTDINP-FAVKELRENAKLN-NVGLDVVMTDLFKGV-- 79 (179)
T ss_pred CeEEEeCCChhHHHHHHHhc---------------CC--EEEEEECCH-HHHHHHHHHHHHc-CCceEEEEccccccc--
Confidence 57999999999987776531 01 455555531 11111111 1000 011111223444432
Q ss_pred CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119 138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPC 217 (360)
Q Consensus 138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 217 (360)
.+++|+++|+..+|.....+.. .+....++..|. .. ...+..||+.-.+-|+|||++++...+
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~~-----~~-----------~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGGK-----DG-----------RKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred CCcccEEEECCCCCCCcchhcc-cchhhhhhhcCC-----ch-----------HHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 3489999999988875432211 000000111000 00 112456888888899999999988644
Q ss_pred C
Q 018119 218 L 218 (360)
Q Consensus 218 ~ 218 (360)
.
T Consensus 143 ~ 143 (179)
T TIGR00537 143 L 143 (179)
T ss_pred c
Confidence 3
No 76
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.32 E-value=0.0044 Score=57.60 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHH
Q 018119 194 IESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALL 273 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~i 273 (360)
...+++.-++-|+|||+.++.....+... ..-|-|.-+.+|+++.+
T Consensus 134 R~~~~~~l~~lL~pgG~~~l~~~~~~~~~----------------------------------~~gPp~~~~~~el~~~~ 179 (218)
T PRK13255 134 RERYVQQLAALLPAGCRGLLVTLDYPQEE----------------------------------LAGPPFSVSDEEVEALY 179 (218)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEEEeCCcc----------------------------------CCCCCCCCCHHHHHHHh
Confidence 34567778889999997555443332110 01144678899999988
Q ss_pred HhCCceeEEEEEEe
Q 018119 274 KRNASFSIEKFEPL 287 (360)
Q Consensus 274 e~~g~F~I~~~e~~ 287 (360)
. +.|+|+.++..
T Consensus 180 ~--~~~~i~~~~~~ 191 (218)
T PRK13255 180 A--GCFEIELLERQ 191 (218)
T ss_pred c--CCceEEEeeec
Confidence 5 34999888754
No 77
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.32 E-value=0.00087 Score=51.51 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=59.1
Q ss_pred EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH---hhCCCCCcceEeecCCcccccc-
Q 018119 60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY---KSLPSDRQYYAAGVPGSFHNRL- 135 (360)
Q Consensus 60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF---~~l~~~~~~f~~gvpgSFy~rl- 135 (360)
+|+|+|||.|.++..+.. .+..+++..|+..+-....- +.....+..+..+ .+....
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAAALLADNVEVLKG---DAEELPP 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEc---Chhhhcc
Confidence 589999999998776643 02256666676433222221 1111111122222 222222
Q ss_pred CCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 136 FPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
.+..++|+++++..+++.+ .+...+++.-..-|+|||.+++.
T Consensus 62 ~~~~~~d~i~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 EADESFDVIISDPPLHHLV-------------------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccCCceEEEEEccceeehh-------------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 3567899999999999860 13455677777788999999876
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.31 E-value=0.0015 Score=60.16 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=17.2
Q ss_pred ceeEEeeecCCCCCccHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
..-+|+|+|||+|..|..+..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~ 97 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAE 97 (215)
T ss_pred CcCEEEEECCCccHHHHHHHH
Confidence 356999999999999976544
No 79
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.30 E-value=0.00099 Score=62.52 Aligned_cols=196 Identities=18% Similarity=0.197 Sum_probs=108.2
Q ss_pred HHHhhHHHHHHHHH--------HHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcC
Q 018119 20 YARNSEFQSHGVET--------AKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYG 91 (360)
Q Consensus 20 Y~~nS~~Q~~~~~~--------~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~ 91 (360)
|..++..+....-. -..||..-..+.++.+ ...+.+|+++|||.|...+-+++..
T Consensus 31 y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~-----~~~~~~ilEvGCGvGNtvfPll~~~------------ 93 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD-----EKSAETILEVGCGVGNTVFPLLKTS------------ 93 (264)
T ss_pred hhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc-----ccChhhheeeccCCCcccchhhhcC------------
Confidence 55555555444322 3557777776654432 1223499999999998777664321
Q ss_pred CCCccceEEecCCCCCchHHHHhhCC-CCCcc--eEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCc
Q 018119 92 HDKLEFQVFFNDLVSNDFNALYKSLP-SDRQY--YAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAY 168 (360)
Q Consensus 92 ~~~p~~~v~~nDlp~NDFn~lF~~l~-~~~~~--f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~ 168 (360)
+.|.+.||.+|-..+--+-+=++-. ...++ |+.-.-++=-..-++.+|+|++..-+.| |-+|+.-
T Consensus 94 -~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pek-------- 161 (264)
T KOG2361|consen 94 -PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPEK-------- 161 (264)
T ss_pred -CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE---eccChHH--------
Confidence 2344778877765443332222111 01111 3322222224445566777776655543 4444432
Q ss_pred cCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCC
Q 018119 169 NKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGL 248 (360)
Q Consensus 169 nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~ 248 (360)
+..-+..-.+=|+|||.|++-=.|+.+- ..+ +-. +.-.
T Consensus 162 -------------------------~~~a~~nl~~llKPGG~llfrDYg~~Dl------------aql----RF~-~~~~ 199 (264)
T KOG2361|consen 162 -------------------------MQSVIKNLRTLLKPGGSLLFRDYGRYDL------------AQL----RFK-KGQC 199 (264)
T ss_pred -------------------------HHHHHHHHHHHhCCCcEEEEeecccchH------------HHH----hcc-CCce
Confidence 3334556667899999999886666643 111 100 2222
Q ss_pred CCHhhh-cccCCCcccCCHHHHHHHHHhCCceeEEEEEEe
Q 018119 249 LSEAQV-DSFNLPSYFPTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 249 i~~e~~-d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
|++..+ ..=-.+.|+-+.+|+++++.+.| |...+++.-
T Consensus 200 i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 200 ISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred eecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 322111 12235789999999999999995 877666643
No 80
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.28 E-value=0.0013 Score=66.12 Aligned_cols=99 Identities=18% Similarity=0.289 Sum_probs=64.1
Q ss_pred eeEEeeecCCCCCccHHHHHH--------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119 58 VFSIADLGCSVGPNTFNAVQN--------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY 123 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~--------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f 123 (360)
.-.++|+|||+|..++.+... .+..+.++....+ ...+.++..|.. .
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g--L~NV~~i~~DA~-----~------------ 183 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN--LKNLLIINYDAR-----L------------ 183 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC--CCcEEEEECCHH-----H------------
Confidence 348999999999998888753 2333333333222 123555544442 1
Q ss_pred EeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHH
Q 018119 124 AAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQ 203 (360)
Q Consensus 124 ~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 203 (360)
+. ..+|++++|.++.++...|..+-. .|+. ...||+.-++
T Consensus 184 -------ll-~~~~~~s~D~I~lnFPdPW~KkrH-------------RRlv-------------------~~~fL~e~~R 223 (390)
T PRK14121 184 -------LL-ELLPSNSVEKIFVHFPVPWDKKPH-------------RRVI-------------------SEDFLNEALR 223 (390)
T ss_pred -------hh-hhCCCCceeEEEEeCCCCccccch-------------hhcc-------------------HHHHHHHHHH
Confidence 11 347889999999998888833311 0221 3568888899
Q ss_pred HhccCCeEEEEe
Q 018119 204 ELASGGLMALIV 215 (360)
Q Consensus 204 EL~pGG~lvl~~ 215 (360)
-|+|||.+.+..
T Consensus 224 vLkpGG~l~l~T 235 (390)
T PRK14121 224 VLKPGGTLELRT 235 (390)
T ss_pred HcCCCcEEEEEE
Confidence 999999998875
No 81
>PRK04266 fibrillarin; Provisional
Probab=97.28 E-value=0.0032 Score=58.90 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.8
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
..+|+|+|||+|..|+.+.+
T Consensus 73 g~~VlD~G~G~G~~~~~la~ 92 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSD 92 (226)
T ss_pred CCEEEEEccCCCHHHHHHHH
Confidence 46999999999998877644
No 82
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.27 E-value=0.0015 Score=65.65 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=60.1
Q ss_pred eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hC----CCC-CcceEeecCCccc
Q 018119 59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SL----PSD-RQYYAAGVPGSFH 132 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l----~~~-~~~f~~gvpgSFy 132 (360)
-+|+|+|||+|.-++.+.+. .|..+|+..|... .-=...+ ++ +.. .+ +..+.+..+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~---------------~P~~~V~~vD~S~-~Av~~A~~N~~~n~~~~~~~--v~~~~~D~l 291 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK---------------NPQAKVVFVDESP-MAVASSRLNVETNMPEALDR--CEFMINNAL 291 (378)
T ss_pred CeEEEEeccccHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHHHHHHHcCcccCce--EEEEEcccc
Confidence 48999999999877655321 2557777777742 0000011 01 100 01 111122334
Q ss_pred cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119 133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA 212 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 212 (360)
.. ++..++|+|+|+--+|+.-.++. + ....+++.=.+-|+|||.++
T Consensus 292 ~~-~~~~~fDlIlsNPPfh~~~~~~~----------------------~-----------ia~~l~~~a~~~LkpGG~L~ 337 (378)
T PRK15001 292 SG-VEPFRFNAVLCNPPFHQQHALTD----------------------N-----------VAWEMFHHARRCLKINGELY 337 (378)
T ss_pred cc-CCCCCEEEEEECcCcccCccCCH----------------------H-----------HHHHHHHHHHHhcccCCEEE
Confidence 33 35578999999999998433211 0 11235655567899999999
Q ss_pred EEe
Q 018119 213 LIV 215 (360)
Q Consensus 213 l~~ 215 (360)
++.
T Consensus 338 iV~ 340 (378)
T PRK15001 338 IVA 340 (378)
T ss_pred EEE
Confidence 884
No 83
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.20 E-value=0.0015 Score=64.81 Aligned_cols=106 Identities=12% Similarity=0.208 Sum_probs=61.2
Q ss_pred eEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCCC
Q 018119 59 FSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFPK 138 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP~ 138 (360)
-+|+|+|||+|..++.+... .|..+|...|....=....=+++.... +=...+++..+.. .+
T Consensus 198 g~VLDlGCG~G~ls~~la~~---------------~p~~~v~~vDis~~Al~~A~~nl~~n~-l~~~~~~~D~~~~--~~ 259 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH---------------SPKIRLTLSDVSAAALESSRATLAANG-LEGEVFASNVFSD--IK 259 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh---------------CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCEEEEcccccc--cC
Confidence 37999999999877655321 144667777763100000000111000 0001122333332 25
Q ss_pred CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119 139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
+++|+|+|+-.+||.-.. ...+...|++.=++-|+|||.|+++.
T Consensus 260 ~~fDlIvsNPPFH~g~~~---------------------------------~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQT---------------------------------SLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccEEEECCCccCCccc---------------------------------cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 789999999999983210 01245678888889999999998875
No 84
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.20 E-value=0.00089 Score=61.30 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=16.4
Q ss_pred CceeEEeeecCCCCCccHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNA 75 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~ 75 (360)
....+|+|+|||+|..|..+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~l 96 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVL 96 (212)
T ss_pred CCCCEEEEECCCccHHHHHH
Confidence 34579999999999998744
No 85
>PTZ00146 fibrillarin; Provisional
Probab=97.19 E-value=0.0026 Score=61.68 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.4
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
-.+|+|+|||+|..|..+.+
T Consensus 133 G~~VLDLGaG~G~~t~~lAd 152 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSD 152 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHH
Confidence 36899999999998866654
No 86
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.17 E-value=0.0024 Score=62.08 Aligned_cols=147 Identities=20% Similarity=0.218 Sum_probs=92.0
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC----CCCcceEeecCCccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP----SDRQYYAAGVPGSFH 132 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~----~~~~~f~~gvpgSFy 132 (360)
+--+|+|+||+.|.-++.+.. + .| -.|+=-| |+-.|..-|+.+. ....+|.. |-+.+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~-------~--------GA-~~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~l--plgvE 175 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLG-------R--------GA-KSVIGID-PSPLFYLQFEAIKHFLGQDPPVFEL--PLGVE 175 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhh-------c--------CC-CEEEEEC-CChHHHHHHHHHHHHhCCCccEEEc--Ccchh
Confidence 346999999999998877642 1 12 2233333 4445555555432 22333333 22223
Q ss_pred cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119 133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA 212 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 212 (360)
. |=+.+++|+|||.-.|=.++. |- ..|+.-..-|+|||.||
T Consensus 176 ~-Lp~~~~FDtVF~MGVLYHrr~-Pl-------------------------------------~~L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 176 D-LPNLGAFDTVFSMGVLYHRRS-PL-------------------------------------DHLKQLKDSLRPGGELV 216 (315)
T ss_pred h-ccccCCcCEEEEeeehhccCC-HH-------------------------------------HHHHHHHHhhCCCCEEE
Confidence 2 222678999999877766443 11 13445557899999999
Q ss_pred EEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEE
Q 018119 213 LIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKF 284 (360)
Q Consensus 213 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~ 284 (360)
+..+..+.... .-+++++.+..|+-=|+.||..-+..+++..| |+-.++
T Consensus 217 LETlvi~g~~~----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~ 265 (315)
T PF08003_consen 217 LETLVIDGDEN----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRC 265 (315)
T ss_pred EEEeeecCCCc----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEE
Confidence 99876543311 12356666777888888899999999999996 864433
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.14 E-value=0.0046 Score=59.69 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEec
Q 018119 194 IESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
...|++.-.+-|+|||++++.+.
T Consensus 230 ~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 45688888899999999999874
No 88
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.11 E-value=0.0027 Score=57.11 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHhccCCeEEEEe
Q 018119 193 GIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 193 D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
+...+|+.-.+-|+|||++++..
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEE
Confidence 56778888899999999999975
No 89
>PRK14967 putative methyltransferase; Provisional
Probab=97.10 E-value=0.0068 Score=56.06 Aligned_cols=165 Identities=16% Similarity=0.100 Sum_probs=79.7
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCC-CCcceEeecCCcccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPS-DRQYYAAGVPGSFHNRL 135 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~-~~~~f~~gvpgSFy~rl 135 (360)
.-+|+|+|||+|..++.+... +.-+|+..|.... .-...+ ++.. .-. +..+-+.+.. .
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~----------------~~~~v~~vD~s~~-~l~~a~~n~~~~~~~--~~~~~~d~~~-~ 96 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA----------------GAGSVTAVDISRR-AVRSARLNALLAGVD--VDVRRGDWAR-A 96 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc----------------CCCeEEEEECCHH-HHHHHHHHHHHhCCe--eEEEECchhh-h
Confidence 368999999999987766431 0024455555321 111111 1100 001 1122244544 4
Q ss_pred CCCCceeEEEecccccccCCCCccccCC-CCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 136 FPKASINFFHCSYGLQWLSSTPKELNDQ-NSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 136 fP~~S~h~~~Ss~alHWLS~~P~~~~~~-~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
+|.+++|+++++--.+..+... ..+. ...+|+.| .. -..++..|++.=.+-|+|||++++.
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~------~~----------~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG------PD----------GRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC------Cc----------HHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5778999999975433322111 0000 00011111 00 1124667888778889999999987
Q ss_pred ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCC
Q 018119 215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNA 277 (360)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g 277 (360)
.....+ +.+++..+...|. .-+.+.+..+|+ .|..-.....+++.|
T Consensus 159 ~~~~~~---------------~~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 159 QSELSG---------------VERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred EecccC---------------HHHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 543321 1223333434443 344445555663 332223345566665
No 90
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.99 E-value=0.0034 Score=57.15 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=63.9
Q ss_pred cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
-||++|+|.|+-+-+|+=+.+ |..+.. +=|+-|.+.+++
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~-P~~vL~----------------------------------------EmlRVgr~~IVs 108 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRR-PDEVLE----------------------------------------EMLRVGRRAIVS 108 (193)
T ss_pred hCCCCCccEEehHhHHHhHhH-HHHHHH----------------------------------------HHHHhcCeEEEE
Confidence 489999999999999998655 443321 457889999999
Q ss_pred ecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCccc------CCHHHHHHHHHhCCceeEEEEEEec
Q 018119 215 VPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYF------PTPQELKALLKRNASFSIEKFEPLA 288 (360)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~------ps~eE~~~~ie~~g~F~I~~~e~~~ 288 (360)
|+.-+ .|.. -..|.-.|..+.. +.+..+||. -|..+++++.++.| ++|.+-..+.
T Consensus 109 FPNFg------------~W~~----R~~l~~~GrmPvt--~~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~ 169 (193)
T PF07021_consen 109 FPNFG------------HWRN----RLQLLLRGRMPVT--KALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLD 169 (193)
T ss_pred ecChH------------HHHH----HHHHHhcCCCCCC--CCCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEc
Confidence 85432 2332 1133445766554 334445554 69999999999984 8888776663
No 91
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.88 E-value=0.001 Score=61.31 Aligned_cols=86 Identities=24% Similarity=0.333 Sum_probs=46.6
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCC-CchHHHHhhCCCCCcceEeecCCccccc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVS-NDFNALYKSLPSDRQYYAAGVPGSFHNR 134 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~-NDFn~lF~~l~~~~~~f~~gvpgSFy~r 134 (360)
++..+|||+|||++..+ .++.. .+.|+-=||-. ||.=+ .|=++-||
T Consensus 71 ~~~~viaD~GCGdA~la--------~~~~~----------~~~V~SfDLva~n~~Vt---------acdia~vP------ 117 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLA--------KAVPN----------KHKVHSFDLVAPNPRVT---------ACDIANVP------ 117 (219)
T ss_dssp -TTS-EEEES-TT-HHH--------HH--S-------------EEEEESS-SSTTEE---------ES-TTS-S------
T ss_pred CCCEEEEECCCchHHHH--------Hhccc----------CceEEEeeccCCCCCEE---------EecCccCc------
Confidence 55789999999998766 22221 24555556643 22211 11112333
Q ss_pred cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
++++|+|+++.+-+|.= .||..||+-=.+=|||||.|.+.
T Consensus 118 -L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 118 -LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp ---TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEEEEE
Confidence 68999999988877642 25788888888999999999877
No 92
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.87 E-value=0.0044 Score=50.60 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=57.9
Q ss_pred eEEeeecCCCCCccHHHHHHH-------------HHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEe
Q 018119 59 FSIADLGCSVGPNTFNAVQNI-------------IDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAA 125 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~~i-------------i~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~ 125 (360)
.+|+|+|||+|..++.+.... ++..+......+. ...++++..|.- |+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-~~~~~~~~~D~~--~~---------------- 62 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-DDRVEVIVGDAR--DL---------------- 62 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-TTTEEEEESHHH--HH----------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-CceEEEEECchh--hc----------------
Confidence 589999999999888887642 2222222222111 112344443331 11
Q ss_pred ecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018119 126 GVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQEL 205 (360)
Q Consensus 126 gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 205 (360)
.+.++.+++|+++++-=.+.....+.. -.++...|++.-.+-|
T Consensus 63 -------~~~~~~~~~D~Iv~npP~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~L 105 (117)
T PF13659_consen 63 -------PEPLPDGKFDLIVTNPPYGPRSGDKAA------------------------------LRRLYSRFLEAAARLL 105 (117)
T ss_dssp -------HHTCTTT-EEEEEE--STTSBTT----------------------------------GGCHHHHHHHHHHHHE
T ss_pred -------hhhccCceeEEEEECCCCccccccchh------------------------------hHHHHHHHHHHHHHHc
Confidence 124677899999997554432111110 0125678999999999
Q ss_pred ccCCeEEEEec
Q 018119 206 ASGGLMALIVP 216 (360)
Q Consensus 206 ~pGG~lvl~~~ 216 (360)
+|||.+++.++
T Consensus 106 ~~gG~~~~~~~ 116 (117)
T PF13659_consen 106 KPGGVLVFITP 116 (117)
T ss_dssp EEEEEEEEEEE
T ss_pred CCCeEEEEEeC
Confidence 99999999864
No 93
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.86 E-value=0.014 Score=53.01 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=34.7
Q ss_pred CceeEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhhcCCCCccceEEecCCCC
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVS 106 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~ 106 (360)
.+--++.|+||++|.-|+.++- ..++.+++.+..-+ .+.++|.--|-|.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~n~~vv~g~Ap~ 95 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG--VDNLEVVEGDAPE 95 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CCcEEEEeccchH
Confidence 3346999999999999999982 45666666655554 3447777777663
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.84 E-value=0.0063 Score=58.73 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=14.7
Q ss_pred eeEEeeecCCCCCccHHH
Q 018119 58 VFSIADLGCSVGPNTFNA 75 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~ 75 (360)
.-+|+|+|||+|..++.+
T Consensus 160 g~~VLDvGcGsG~lai~a 177 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAA 177 (288)
T ss_pred CCEEEEeCCChhHHHHHH
Confidence 368999999999877654
No 95
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.72 E-value=0.0048 Score=57.30 Aligned_cols=126 Identities=11% Similarity=0.143 Sum_probs=64.4
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC--CCCcceEeecCCccccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP--SDRQYYAAGVPGSFHNR 134 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~--~~~~~f~~gvpgSFy~r 134 (360)
+..+|+|+|||+|..++.+.... |..+++-.|.-..=....=+.+. ...+ +.-+.+.+..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~d~~~- 148 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------------PDARVTAVDISPEALAVARKNAARLGLDN--VTFLQSDWFE- 148 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHHcCCCe--EEEEECchhc-
Confidence 34689999999998888775421 23455655543211111111110 0011 1112233444
Q ss_pred cCCCCceeEEEecccccccCCC---CccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119 135 LFPKASINFFHCSYGLQWLSST---PKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM 211 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~---P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 211 (360)
.+|++++|+|+|+--.+..+.. +..+... .| ..... . ....-.++..|++.-.+-|+|||.+
T Consensus 149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~-e~----~~~~~-~---------~~~~~~~~~~~i~~~~~~L~~gG~~ 213 (251)
T TIGR03534 149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFH-EP----RLALF-G---------GEDGLDFYRRIIAQAPRLLKPGGWL 213 (251)
T ss_pred cCcCCceeEEEECCCCCchhhhhhcChhhhhc-CC----HHHHc-C---------CCcHHHHHHHHHHHHHHhcccCCEE
Confidence 4577899999997554432221 1111000 00 00000 0 0112245677899889999999999
Q ss_pred EEEe
Q 018119 212 ALIV 215 (360)
Q Consensus 212 vl~~ 215 (360)
++..
T Consensus 214 ~~~~ 217 (251)
T TIGR03534 214 LLEI 217 (251)
T ss_pred EEEE
Confidence 9864
No 96
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.71 E-value=0.02 Score=55.96 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhccCCeEEEEec
Q 018119 195 ESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 195 ~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
..+++.-.+-|+|||++++.+.
T Consensus 243 ~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 243 RRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHhcCCCCEEEEEEC
Confidence 4578877888999999999853
No 97
>PRK00811 spermidine synthase; Provisional
Probab=96.69 E-value=0.011 Score=57.11 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=18.1
Q ss_pred CceeEEeeecCCCCCccHHHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
+++-+|+|+|||+|..+..+++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~ 96 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK 96 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc
Confidence 4567999999999998877654
No 98
>PRK14968 putative methyltransferase; Provisional
Probab=96.67 E-value=0.024 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEec
Q 018119 194 IESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
+..|++.-.+-|+|||.+++...
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEc
Confidence 56788888999999999988763
No 99
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.65 E-value=0.0024 Score=60.65 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=33.4
Q ss_pred ccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEE
Q 018119 134 RLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 134 rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
-.++++|+|+++.+-+|.= .||..|++--.+-|++||.+.+
T Consensus 222 vPl~d~svDvaV~CLSLMg---------------------------------------tn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 222 VPLEDESVDVAVFCLSLMG---------------------------------------TNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred CcCccCcccEEEeeHhhhc---------------------------------------ccHHHHHHHHHHHhccCceEEE
Confidence 3478899999887665542 2578899999999999999987
Q ss_pred E
Q 018119 214 I 214 (360)
Q Consensus 214 ~ 214 (360)
.
T Consensus 263 A 263 (325)
T KOG3045|consen 263 A 263 (325)
T ss_pred E
Confidence 6
No 100
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.47 E-value=0.0021 Score=66.00 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=44.4
Q ss_pred CCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH--hhCCCCCcceEeecCCccc
Q 018119 55 SSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY--KSLPSDRQYYAAGVPGSFH 132 (360)
Q Consensus 55 ~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF--~~l~~~~~~f~~gvpgSFy 132 (360)
....-+++|+|||+|..+..+++.=|-+ +.+-.+|-- -.+.++. +-+| .+ .|+.| =.
T Consensus 115 ~g~iR~~LDvGcG~aSF~a~l~~r~V~t--------------~s~a~~d~~-~~qvqfaleRGvp---a~--~~~~~-s~ 173 (506)
T PF03141_consen 115 GGGIRTALDVGCGVASFGAYLLERNVTT--------------MSFAPNDEH-EAQVQFALERGVP---AM--IGVLG-SQ 173 (506)
T ss_pred CCceEEEEeccceeehhHHHHhhCCceE--------------EEcccccCC-chhhhhhhhcCcc---hh--hhhhc-cc
Confidence 3557778999999998887776533321 222222211 0111111 1122 11 11111 14
Q ss_pred cccCCCCceeEEEeccccc-ccCC
Q 018119 133 NRLFPKASINFFHCSYGLQ-WLSS 155 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alH-WLS~ 155 (360)
.-.||++++|++||+-|+. |.+.
T Consensus 174 rLPfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 174 RLPFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred cccCCccchhhhhcccccccchhc
Confidence 5679999999999999986 8554
No 101
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.015 Score=53.73 Aligned_cols=49 Identities=29% Similarity=0.411 Sum_probs=33.3
Q ss_pred eeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119 141 INFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 141 ~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
+++.+---+..|=+..| .| +|+++.+.+++-+++.+| |++||+||+-..
T Consensus 122 V~v~~gDG~~G~~~~aP---yD---------~I~Vtaaa~~vP~~Ll~Q---------------L~~gGrlv~PvG 170 (209)
T COG2518 122 VTVRHGDGSKGWPEEAP---YD---------RIIVTAAAPEVPEALLDQ---------------LKPGGRLVIPVG 170 (209)
T ss_pred eEEEECCcccCCCCCCC---cC---------EEEEeeccCCCCHHHHHh---------------cccCCEEEEEEc
Confidence 56666666667744433 22 577777666666666554 999999999876
No 102
>PLN03075 nicotianamine synthase; Provisional
Probab=96.42 E-value=0.036 Score=53.90 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=57.7
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC-C-----CCcceEeecCCc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP-S-----DRQYYAAGVPGS 130 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~-~-----~~~~f~~gvpgS 130 (360)
.+-+|||+|||.||-|...+..-. .|.-++.--|.-. +-+.+.+.+- . .+--|..+--..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-------------~p~~~~~giD~d~-~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~ 188 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-------------LPTTSFHNFDIDP-SANDVARRLVSSDPDLSKRMFFHTADVMD 188 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-------------CCCCEEEEEeCCH-HHHHHHHHHhhhccCccCCcEEEECchhh
Confidence 568899999999988776554211 1223333334321 2222222221 0 112344443222
Q ss_pred cccccCC-CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119 131 FHNRLFP-KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG 209 (360)
Q Consensus 131 Fy~rlfP-~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 209 (360)
+.+ ...+|+||+. ++|-..+.+ -...|+.-++-|+|||
T Consensus 189 ----~~~~l~~FDlVF~~-ALi~~dk~~------------------------------------k~~vL~~l~~~LkPGG 227 (296)
T PLN03075 189 ----VTESLKEYDVVFLA-ALVGMDKEE------------------------------------KVKVIEHLGKHMAPGA 227 (296)
T ss_pred ----cccccCCcCEEEEe-ccccccccc------------------------------------HHHHHHHHHHhcCCCc
Confidence 222 3689999999 655433311 1235666678899999
Q ss_pred eEEEEe
Q 018119 210 LMALIV 215 (360)
Q Consensus 210 ~lvl~~ 215 (360)
.+++-+
T Consensus 228 ~Lvlr~ 233 (296)
T PLN03075 228 LLMLRS 233 (296)
T ss_pred EEEEec
Confidence 999886
No 103
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.41 E-value=0.0089 Score=59.08 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=34.1
Q ss_pred CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119 139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
..+|+|-+-.|||..=.. ++-...||+.-++-|+|||.++.+++
T Consensus 144 ~~FDvVScQFalHY~Fes----------------------------------e~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFES----------------------------------EEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp S-EEEEEEES-GGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcceeehHHHHHHhcCC----------------------------------HHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 599999999999983321 12256799999999999999999985
No 104
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.34 E-value=0.014 Score=54.29 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=77.2
Q ss_pred CceeEEeeecCCCCCccHHHHH-------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ-------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQY 122 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~-------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~ 122 (360)
.+.-+.+|.|+|.|+-|-.++. ..++..++.... ..+.-..+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~-------------------------~~~~v~~~ 108 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK-------------------------DNPRVGEF 108 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC-------------------------GGCCEEEE
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc-------------------------cCCCcceE
Confidence 4589999999999998875532 333333322110 00011245
Q ss_pred eEeecCCccccccCCC-CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119 123 YAAGVPGSFHNRLFPK-ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR 201 (360)
Q Consensus 123 f~~gvpgSFy~rlfP~-~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 201 (360)
|..|. +-.-|. +.+|+++.-||+-.|.. .||-.||+..
T Consensus 109 ~~~gL-----Q~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~RC 147 (218)
T PF05891_consen 109 YCVGL-----QDFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLKRC 147 (218)
T ss_dssp EES-G-----GG----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHHHH
T ss_pred EecCH-----hhccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHHHH
Confidence 66665 233354 79999999888888665 4899999999
Q ss_pred HHHhccCCeEEEEe-cCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCcee
Q 018119 202 AQELASGGLMALIV-PCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFS 280 (360)
Q Consensus 202 a~EL~pGG~lvl~~-~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~ 280 (360)
.+.|+|||.+|+== ....+.+ .|+ ++ | -...||.+.++.++++.| ++
T Consensus 148 k~~L~~~G~IvvKEN~~~~~~~---------~~D----------------~~--D----sSvTRs~~~~~~lF~~AG-l~ 195 (218)
T PF05891_consen 148 KQALKPNGVIVVKENVSSSGFD---------EFD----------------EE--D----SSVTRSDEHFRELFKQAG-LR 195 (218)
T ss_dssp HHHEEEEEEEEEEEEEESSSEE---------EEE----------------TT--T----TEEEEEHHHHHHHHHHCT--E
T ss_pred HHhCcCCcEEEEEecCCCCCCc---------ccC----------------Cc--c----CeeecCHHHHHHHHHHcC-CE
Confidence 99999999888741 1111110 001 00 1 123688999999999995 88
Q ss_pred EEEEEEe
Q 018119 281 IEKFEPL 287 (360)
Q Consensus 281 I~~~e~~ 287 (360)
|.+-+.-
T Consensus 196 ~v~~~~Q 202 (218)
T PF05891_consen 196 LVKEEKQ 202 (218)
T ss_dssp EEEEEE-
T ss_pred EEEeccc
Confidence 8877754
No 105
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.32 E-value=0.008 Score=56.49 Aligned_cols=90 Identities=22% Similarity=0.179 Sum_probs=56.3
Q ss_pred CceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCC
Q 018119 139 ASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCL 218 (360)
Q Consensus 139 ~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 218 (360)
+++|+|.|.-.|+. +|. =..|+++.++=+||||.|++...-|
T Consensus 123 ~~FDvV~cmEVlEH---v~d-----------------------------------p~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 123 GQFDVVTCMEVLEH---VPD-----------------------------------PESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CCccEEEEhhHHHc---cCC-----------------------------------HHHHHHHHHHHcCCCcEEEEecccc
Confidence 69999998887777 542 2348999999999999999998765
Q ss_pred CCCCCCCCCchhhHH--HHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119 219 PDGISPGECSVLASA--DLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFE 285 (360)
Q Consensus 219 ~~~~~~~~~~~~~~~--~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e 285 (360)
.-- ..+. -..+-.++ ++-.|--+-++ +-.++|+...+... .|++....
T Consensus 165 t~k--------a~~~~i~~ae~vl~-~vP~gTH~~~k---------~irp~El~~~~~~~-~~~~~~~~ 214 (243)
T COG2227 165 TLK--------AYLLAIIGAEYVLR-IVPKGTHDYRK---------FIKPAELIRWLLGA-NLKIIDRK 214 (243)
T ss_pred CHH--------HHHHHHHHHHHHHH-hcCCcchhHHH---------hcCHHHHHHhcccC-CceEEeec
Confidence 421 1111 11122222 44444333222 34678888887775 46666555
No 106
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.29 E-value=0.047 Score=52.54 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHhccCCeEEEEec
Q 018119 193 GIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 193 D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
+...+++.-.+-|+|||.+++.++
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEEEEC
Confidence 456688888889999999999873
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.28 E-value=0.032 Score=52.71 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEe
Q 018119 192 KGIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 192 ~D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
.++..|++.-.+-|+|||++++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 345668888889999999999965
No 108
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.27 E-value=0.02 Score=54.01 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHHHHhccCCeEEEEe
Q 018119 197 FLLARAQELASGGLMALIV 215 (360)
Q Consensus 197 FL~~Ra~EL~pGG~lvl~~ 215 (360)
+++.-.+-|+|||++++.-
T Consensus 195 l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSG 213 (250)
T ss_pred HHHHHHHhcCCCcEEEEEE
Confidence 4555567799999999874
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=96.25 E-value=0.023 Score=54.69 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=69.2
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCccccccCC
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRLFP 137 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rlfP 137 (360)
.-+|+|+|||+|..++.+... .+..+|+..|+-. ++-.+.+..-+ +.-+.. +.+..- .+
T Consensus 65 ~grVLDLGcGsGilsl~la~r---------------~~~~~V~gVDisp-~al~~Ar~n~~-~v~~v~---~D~~e~-~~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHR---------------CKPEKIVCVELNP-EFARIGKRLLP-EAEWIT---SDVFEF-ES 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHHHhCc-CCEEEE---Cchhhh-cc
Confidence 358999999999776655321 0125666677642 44444443211 111222 234322 24
Q ss_pred CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHh--hHHHHHHHHHHHhccCCeEEEEe
Q 018119 138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAK--GIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~--D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
..++|+|+|+-.++++..... .+ ...|+.|.. -.+ .+..||+..+.=|+|+|...+.+
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~--~~--~~~~~GG~~----------------g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDT--KD--VFEYTGGEF----------------EFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred cCCCcEEEEcCCccccCchhh--hh--hhhhccCcc----------------ccccccHHHHHhhhHheecCCceEEEEE
Confidence 578999999999999643111 10 012221110 001 15789999999999999888886
Q ss_pred cCCC
Q 018119 216 PCLP 219 (360)
Q Consensus 216 ~g~~ 219 (360)
-|++
T Consensus 184 ss~~ 187 (279)
T PHA03411 184 SGRP 187 (279)
T ss_pred eccc
Confidence 5554
No 110
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.20 E-value=0.076 Score=48.96 Aligned_cols=170 Identities=18% Similarity=0.167 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHH
Q 018119 32 ETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA 111 (360)
Q Consensus 32 ~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~ 111 (360)
++.++-|-+++++.++ ..+. +|+++|||||--+..+.+. -|.+++-=+|...+-+.+
T Consensus 8 eRNk~pIl~vL~~~l~-------~~~~-~vLEiaSGtGqHa~~FA~~---------------lP~l~WqPSD~~~~~~~s 64 (204)
T PF06080_consen 8 ERNKDPILEVLKQYLP-------DSGT-RVLEIASGTGQHAVYFAQA---------------LPHLTWQPSDPDDNLRPS 64 (204)
T ss_pred hhCHhHHHHHHHHHhC-------ccCc-eEEEEcCCccHHHHHHHHH---------------CCCCEEcCCCCChHHHhh
Confidence 3445555566666443 1222 8999999999777666332 256777788888887766
Q ss_pred HHhhCC-----CCC-c--------ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecC
Q 018119 112 LYKSLP-----SDR-Q--------YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSR 177 (360)
Q Consensus 112 lF~~l~-----~~~-~--------~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~ 177 (360)
+-.-+. +-+ + ......|.. ++..++|.++|.+.+|-.+- ..
T Consensus 65 I~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~-----~~~~~~D~i~~~N~lHI~p~---~~----------------- 119 (204)
T PF06080_consen 65 IRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP-----LSPESFDAIFCINMLHISPW---SA----------------- 119 (204)
T ss_pred HHHHHHhcCCcccCCCeEeecCCCCCccccccc-----cCCCCcceeeehhHHHhcCH---HH-----------------
Confidence 654321 111 1 111221111 25689999999999998332 11
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhccc
Q 018119 178 GPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSF 257 (360)
Q Consensus 178 ~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f 257 (360)
-..+++.=++-|++||.|++.-+=..++..+++. . ..+...|++ -
T Consensus 120 ----------------~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S-N----~~FD~sLr~--------------r 164 (204)
T PF06080_consen 120 ----------------VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES-N----AAFDASLRS--------------R 164 (204)
T ss_pred ----------------HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH-H----HHHHHHHhc--------------C
Confidence 2336677789999999998886544444333321 1 233344442 1
Q ss_pred CCCcccCCHHHHHHHHHhCCceeEEEEE
Q 018119 258 NLPSYFPTPQELKALLKRNASFSIEKFE 285 (360)
Q Consensus 258 ~~P~y~ps~eE~~~~ie~~g~F~I~~~e 285 (360)
+--|=.+..+++.++-+.+| ++++...
T Consensus 165 dp~~GiRD~e~v~~lA~~~G-L~l~~~~ 191 (204)
T PF06080_consen 165 DPEWGIRDIEDVEALAAAHG-LELEEDI 191 (204)
T ss_pred CCCcCccCHHHHHHHHHHCC-CccCccc
Confidence 22245688999999888885 6654443
No 111
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.10 E-value=0.05 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.057 Sum_probs=21.2
Q ss_pred HhhHHHHHHHHHHHhccCCeEEEEec
Q 018119 191 AKGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 191 ~~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
......+|..-++-|+|||+||....
T Consensus 348 ~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 348 AALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 34566788888899999999998864
No 112
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.07 E-value=0.1 Score=47.28 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=16.5
Q ss_pred ceeEEeeecCCCCCccHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAV 76 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~ 76 (360)
..-+|+|+|||+|..++.+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH
Confidence 35699999999998887754
No 113
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.91 E-value=0.026 Score=52.17 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=15.5
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
-.+|+|+|||+|.+|..+..
T Consensus 73 g~~VLeIGtGsGY~aAlla~ 92 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAH 92 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHHH
Confidence 47999999999999987753
No 114
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.78 E-value=0.096 Score=53.70 Aligned_cols=123 Identities=12% Similarity=-0.016 Sum_probs=64.4
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC---CCcceEeecCCccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS---DRQYYAAGVPGSFHNR 134 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~---~~~~f~~gvpgSFy~r 134 (360)
.-+|+|+|||+|..|+.+.+.+- +.-+|+-.|.-..=...+=+.+.. ..--+..+....
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~--------------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~---- 312 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQ--------------NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARS---- 312 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhC--------------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc----
Confidence 36899999999999987654321 112455555543222111111110 111122222222
Q ss_pred cCCCCceeEEEe----cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119 135 LFPKASINFFHC----SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL 210 (360)
Q Consensus 135 lfP~~S~h~~~S----s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 210 (360)
+.|++++|.|+. +..-+|- +.|+... . ..++..+ +..++...+|..=++-|+|||+
T Consensus 313 ~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~--------------~-~~~~~~~----~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 313 FSPEEQPDAILLDAPCTGTGVLG-RRAELRW--------------K-LTPEKLA----ELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred cccCCCCCEEEEcCCCCCcchhh-cCcchhh--------------c-CCHHHHH----HHHHHHHHHHHHHHHhcCCCcE
Confidence 235678999884 2333332 2232211 0 1122222 2334566789999999999999
Q ss_pred EEEEecCC
Q 018119 211 MALIVPCL 218 (360)
Q Consensus 211 lvl~~~g~ 218 (360)
||......
T Consensus 373 lvystcs~ 380 (445)
T PRK14904 373 LVYATCSI 380 (445)
T ss_pred EEEEeCCC
Confidence 99987544
No 115
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.78 E-value=0.14 Score=50.63 Aligned_cols=150 Identities=21% Similarity=0.204 Sum_probs=94.7
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce---EeecCCccc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY---AAGVPGSFH 132 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f---~~gvpgSFy 132 (360)
...-..+|.|-|.|..+-.+++ + -|.+..+-=|+|. +-+.= +++ +--|.|-++
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~--------~-------fp~ik~infdlp~-----v~~~a----~~~~~gV~~v~gdmf 231 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLS--------K-------YPHIKGINFDLPF-----VLAAA----PYLAPGVEHVAGDMF 231 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHH--------h-------CCCCceeecCHHH-----HHhhh----hhhcCCcceeccccc
Confidence 4578899999999988766654 2 2556666667763 21111 122 455666788
Q ss_pred cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119 133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA 212 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 212 (360)
+- .|+.- ++|.-++||-+.+ +|...||+..++-|.|||.++
T Consensus 232 q~-~P~~d--aI~mkWiLhdwtD------------------------------------edcvkiLknC~~sL~~~GkIi 272 (342)
T KOG3178|consen 232 QD-TPKGD--AIWMKWILHDWTD------------------------------------EDCVKILKNCKKSLPPGGKII 272 (342)
T ss_pred cc-CCCcC--eEEEEeecccCCh------------------------------------HHHHHHHHHHHHhCCCCCEEE
Confidence 88 99554 9998888883222 478899999999999999998
Q ss_pred EEecCCCCCCCCCC--CchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119 213 LIVPCLPDGISPGE--CSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP 286 (360)
Q Consensus 213 l~~~g~~~~~~~~~--~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~ 286 (360)
+.=.-.+.+...+. .......+++..+.. +-|+ -++.+|++..+.++| |.+-.+-.
T Consensus 273 v~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~---~~Gk--------------ert~~e~q~l~~~~g-F~~~~~~~ 330 (342)
T KOG3178|consen 273 VVENVTPEEDKFDDIDSSVTRDMDLLMLTQT---SGGK--------------ERTLKEFQALLPEEG-FPVCMVAL 330 (342)
T ss_pred EEeccCCCCCCccccccceeehhHHHHHHHh---ccce--------------eccHHHHHhcchhhc-CceeEEEe
Confidence 87332221111111 111112243333332 2254 588999999999885 87655543
No 116
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.72 E-value=0.072 Score=54.53 Aligned_cols=124 Identities=16% Similarity=0.093 Sum_probs=61.3
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC---CCcceEeecCCccccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS---DRQYYAAGVPGSFHNR 134 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~---~~~~f~~gvpgSFy~r 134 (360)
.-+|+|+|||+|.-|+.+.+..- +.-+|+-.|+-.+=-..+=+++.. ..--+..+....+ ..
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~--------------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-~~ 315 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLK--------------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKV-HE 315 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhC--------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc-cc
Confidence 36899999999999987765320 113444455432111111111110 0111222221111 11
Q ss_pred cCCCCceeEEEecc---cccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119 135 LFPKASINFFHCSY---GLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM 211 (360)
Q Consensus 135 lfP~~S~h~~~Ss~---alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 211 (360)
-+| +++|+|++.. .+..+++.|+... .+ .+...+ ...+--..+|+.=.+-|+|||+|
T Consensus 316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~-------~~--------~~~~~~----~l~~~q~~iL~~a~~~LkpGG~l 375 (444)
T PRK14902 316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKY-------NK--------TKEDIE----SLQEIQLEILESVAQYLKKGGIL 375 (444)
T ss_pred hhc-ccCCEEEEcCCCCCCeeeccCcchhh-------cC--------CHHHHH----HHHHHHHHHHHHHHHHcCCCCEE
Confidence 133 6789998752 3344444443221 11 122111 22233456788888899999999
Q ss_pred EEEec
Q 018119 212 ALIVP 216 (360)
Q Consensus 212 vl~~~ 216 (360)
|....
T Consensus 376 vystc 380 (444)
T PRK14902 376 VYSTC 380 (444)
T ss_pred EEEcC
Confidence 97653
No 117
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.53 E-value=0.071 Score=55.66 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=63.2
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh-CCC---CCcceEeecCCcccc
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS-LPS---DRQYYAAGVPGSFHN 133 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~-l~~---~~~~f~~gvpgSFy~ 133 (360)
..+|+|+|||+|..++.+.... |..+|+--|... +.-.+.+. ... ... +.-+-|+++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---------------p~~~v~avDis~-~al~~A~~N~~~~~l~~~--v~~~~~D~~~ 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---------------PNANVIATDISL-DAIEVAKSNAIKYEVTDR--IQIIHSNWFE 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---------------CCCeEEEEECCH-HHHHHHHHHHHHcCCccc--eeeeecchhh
Confidence 4689999999999888765421 335667777632 22222221 100 011 1122344443
Q ss_pred ccCCCCceeEEEecccccccCCCCcc---ccCC-CCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119 134 RLFPKASINFFHCSYGLQWLSSTPKE---LNDQ-NSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGG 209 (360)
Q Consensus 134 rlfP~~S~h~~~Ss~alHWLS~~P~~---~~~~-~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 209 (360)
. +|.+++|+++|+--....+..+.. +.+. ...++- +.++-.+ .+..+++.-.+-|+|||
T Consensus 201 ~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~--------gg~dGl~--------~~~~il~~a~~~L~~gG 263 (506)
T PRK01544 201 N-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALF--------AEEDGLQ--------AYFIIAENAKQFLKPNG 263 (506)
T ss_pred h-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhc--------CCccHHH--------HHHHHHHHHHHhccCCC
Confidence 2 356789999997433332222111 1100 000000 0111222 24557877788999999
Q ss_pred eEEEEe
Q 018119 210 LMALIV 215 (360)
Q Consensus 210 ~lvl~~ 215 (360)
.+++.+
T Consensus 264 ~l~lEi 269 (506)
T PRK01544 264 KIILEI 269 (506)
T ss_pred EEEEEE
Confidence 999875
No 118
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.47 E-value=0.13 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEe
Q 018119 194 IESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
+.++++.-.+-|+|||.+++..
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEE
Confidence 4467777778899999998876
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.47 E-value=0.08 Score=54.15 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=40.8
Q ss_pred CCceeEEEe---cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 138 KASINFFHC---SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 138 ~~S~h~~~S---s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
++++|.|++ ++.+..+.+.|+.... .+++.. ....++....|..=++-|+|||+||.+
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHh---------------CCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 457898886 3556666666644321 122222 234445677888889999999999998
Q ss_pred ecCCC
Q 018119 215 VPCLP 219 (360)
Q Consensus 215 ~~g~~ 219 (360)
.....
T Consensus 366 TCs~~ 370 (431)
T PRK14903 366 TCTVT 370 (431)
T ss_pred ECCCC
Confidence 86543
No 120
>PRK04457 spermidine synthase; Provisional
Probab=95.47 E-value=0.055 Score=51.62 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCC
Q 018119 195 ESFLLARAQELASGGLMALIVPCLP 219 (360)
Q Consensus 195 ~~FL~~Ra~EL~pGG~lvl~~~g~~ 219 (360)
..|++.-.+-|+|||++++.+.+++
T Consensus 157 ~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 3577888888999999999876543
No 121
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.42 E-value=0.19 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCC
Q 018119 194 IESFLLARAQELASGGLMALIVPCL 218 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~~g~ 218 (360)
...+|+.=++-|+|||++++.++..
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEEcCC
Confidence 3557888788999999999998654
No 122
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=95.41 E-value=0.083 Score=48.89 Aligned_cols=108 Identities=14% Similarity=0.131 Sum_probs=63.1
Q ss_pred ceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119 122 YYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR 201 (360)
Q Consensus 122 ~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 201 (360)
+|+.|-+.+--+ +|+.|+|.|++..+|-= . +|-..-|+.-
T Consensus 129 ~fvva~ge~l~~--l~d~s~DtVV~TlvLCS--v------------------------------------e~~~k~L~e~ 168 (252)
T KOG4300|consen 129 RFVVADGENLPQ--LADGSYDTVVCTLVLCS--V------------------------------------EDPVKQLNEV 168 (252)
T ss_pred EEEeechhcCcc--cccCCeeeEEEEEEEec--c------------------------------------CCHHHHHHHH
Confidence 466666544332 38999999998877642 1 1223346666
Q ss_pred HHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeE
Q 018119 202 AQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSI 281 (360)
Q Consensus 202 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I 281 (360)
.+-|+|||++++.=-|++.-+ ....+++...+-+-.+...|-. =.-|.-++|++. .|++
T Consensus 169 ~rlLRpgG~iifiEHva~~y~-----~~n~i~q~v~ep~~~~~~dGC~---------------ltrd~~e~Leda-~f~~ 227 (252)
T KOG4300|consen 169 RRLLRPGGRIIFIEHVAGEYG-----FWNRILQQVAEPLWHLESDGCV---------------LTRDTGELLEDA-EFSI 227 (252)
T ss_pred HHhcCCCcEEEEEecccccch-----HHHHHHHHHhchhhheeccceE---------------EehhHHHHhhhc-cccc
Confidence 688999999999866665431 1122233333333334444432 123445567766 6988
Q ss_pred EEEEEeccc
Q 018119 282 EKFEPLALS 290 (360)
Q Consensus 282 ~~~e~~~~~ 290 (360)
...+.++..
T Consensus 228 ~~~kr~~~~ 236 (252)
T KOG4300|consen 228 DSCKRFNFG 236 (252)
T ss_pred chhhcccCC
Confidence 888877544
No 123
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.38 E-value=0.3 Score=47.05 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=69.0
Q ss_pred eEEeeecCCCCCccHHHHHH--------------HHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119 59 FSIADLGCSVGPNTFNAVQN--------------IIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA 124 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~~--------------ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~ 124 (360)
-.|+|+|||+|.-|+.++.. .|.-..+.++..+. .--|.|.++|+.+-=|+.+-
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-~g~i~v~~~~me~d~~~~~~----------- 217 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-SGRIEVIHNIMESDASDEHP----------- 217 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-cCceEEEecccccccccccc-----------
Confidence 37999999999999998872 33333333332221 12489999998764333311
Q ss_pred eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHH--------HhhHHH
Q 018119 125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAES--------AKGIES 196 (360)
Q Consensus 125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~--------~~D~~~ 196 (360)
.+.+.+|+.+|| |+-+.+.+-+. ..|||. .|..-. -.-+..
T Consensus 218 -----------l~~~~~dllvsN---------PPYI~~dD~~~----------l~~eV~-~yEp~lALdGg~eG~~~~~~ 266 (328)
T KOG2904|consen 218 -----------LLEGKIDLLVSN---------PPYIRKDDNRQ----------LKPEVR-LYEPKLALDGGLEGYDNLVH 266 (328)
T ss_pred -----------cccCceeEEecC---------CCcccccchhh----------cCchhe-ecCchhhhccccchhHHHHH
Confidence 455677777775 33332221110 011110 000000 011445
Q ss_pred HHHHHHHHhccCCeEEEEecCCCCC
Q 018119 197 FLLARAQELASGGLMALIVPCLPDG 221 (360)
Q Consensus 197 FL~~Ra~EL~pGG~lvl~~~g~~~~ 221 (360)
|+..-.+-|+|||.+++...+++..
T Consensus 267 ~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 267 YWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred HHHhhHhhcccCCeEEEEecccccC
Confidence 6777778999999999999988654
No 124
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.32 E-value=0.21 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEec
Q 018119 194 IESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
+..+|+.-.+-|+|||++++...
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEee
Confidence 45677777778999999999863
No 125
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.24 E-value=0.15 Score=48.71 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhccCCeEEEE
Q 018119 195 ESFLLARAQELASGGLMALI 214 (360)
Q Consensus 195 ~~FL~~Ra~EL~pGG~lvl~ 214 (360)
..|++.-++-|+|||.+++.
T Consensus 166 ~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 166 KEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHHhCCCcEEEEc
Confidence 35777777999999999987
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.15 E-value=0.088 Score=51.87 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=17.2
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.-+|+|+|||+|.+|..+..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCEEEEEeCCccHHHHHHHH
Confidence 46899999999999988754
No 127
>PRK03612 spermidine synthase; Provisional
Probab=94.96 E-value=0.27 Score=51.50 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHH
Q 018119 196 SFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLK 274 (360)
Q Consensus 196 ~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie 274 (360)
.|++.-.+-|+|||++++.... +.. . -+.+.++.+.|.+.|. .-..-..++|.| .++--.+-
T Consensus 396 ef~~~~~~~L~pgG~lv~~~~~-~~~----~------~~~~~~i~~~l~~~gf--~v~~~~~~vps~----g~w~f~~a 457 (521)
T PRK03612 396 EFYRLLKRRLAPDGLLVVQSTS-PYF----A------PKAFWSIEATLEAAGL--ATTPYHVNVPSF----GEWGFVLA 457 (521)
T ss_pred HHHHHHHHhcCCCeEEEEecCC-ccc----c------hHHHHHHHHHHHHcCC--EEEEEEeCCCCc----chhHHHee
Confidence 3666666789999999987521 111 0 1455566666667776 222233455666 45554444
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=94.83 E-value=0.21 Score=50.86 Aligned_cols=127 Identities=16% Similarity=0.062 Sum_probs=66.9
Q ss_pred eeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCC-cceEeecCCccccc--
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDR-QYYAAGVPGSFHNR-- 134 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~-~~f~~gvpgSFy~r-- 134 (360)
.-+|+|+|||+|.-|+.+...+ +.-+|+-.|.-.+=...+-+++.... .+-+..+.+.-..-
T Consensus 239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 4699999999999998775422 01344555553221222212221100 11111111211111
Q ss_pred cCCCCceeEEEe---cccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeE
Q 018119 135 LFPKASINFFHC---SYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLM 211 (360)
Q Consensus 135 lfP~~S~h~~~S---s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 211 (360)
..+.+++|.|++ ++++.-+.+.|+.... . .++..+ +..+.-..+|..=++-|+|||+|
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~--------------~-~~~~~~----~l~~lQ~~lL~~a~~~LkpgG~l 364 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWL--------------R-KPRDIA----ELAELQSEILDAIWPLLKTGGTL 364 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhc--------------C-CHHHHH----HHHHHHHHHHHHHHHhcCCCcEE
Confidence 125678999986 3445555566643221 1 122222 33334567888888889999999
Q ss_pred EEEecCC
Q 018119 212 ALIVPCL 218 (360)
Q Consensus 212 vl~~~g~ 218 (360)
|......
T Consensus 365 vystcs~ 371 (426)
T TIGR00563 365 VYATCSV 371 (426)
T ss_pred EEEeCCC
Confidence 9987654
No 129
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.79 E-value=0.14 Score=49.82 Aligned_cols=100 Identities=13% Similarity=0.226 Sum_probs=59.4
Q ss_pred EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC-----CCCc--ceEeecCCccc
Q 018119 60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP-----SDRQ--YYAAGVPGSFH 132 (360)
Q Consensus 60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~-----~~~~--~f~~gvpgSFy 132 (360)
+|+|+|||-|+-.+.+.+. .|..++.+.|. |+..|=.+=. .... +|.+- =|
T Consensus 161 ~vlDlGCG~Gvlg~~la~~---------------~p~~~vtmvDv---n~~Av~~ar~Nl~~N~~~~~~v~~s~----~~ 218 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKK---------------SPQAKLTLVDV---NARAVESARKNLAANGVENTEVWASN----LY 218 (300)
T ss_pred cEEEeCCCccHHHHHHHHh---------------CCCCeEEEEec---CHHHHHHHHHhHHHcCCCccEEEEec----cc
Confidence 9999999999988776331 35677777775 4444332211 1112 23322 35
Q ss_pred cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119 133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA 212 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 212 (360)
..+.. ++|+|+||==+| ..+. ....+ -..++..=++-|++||.|.
T Consensus 219 ~~v~~--kfd~IisNPPfh---------~G~~-------------v~~~~-----------~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 219 EPVEG--KFDLIISNPPFH---------AGKA-------------VVHSL-----------AQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ccccc--cccEEEeCCCcc---------CCcc-------------hhHHH-----------HHHHHHHHHHhhccCCEEE
Confidence 55555 899999874333 1110 00011 1246666778999999999
Q ss_pred EEec
Q 018119 213 LIVP 216 (360)
Q Consensus 213 l~~~ 216 (360)
++.-
T Consensus 264 iVan 267 (300)
T COG2813 264 IVAN 267 (300)
T ss_pred EEEc
Confidence 8875
No 130
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.57 E-value=0.1 Score=51.17 Aligned_cols=112 Identities=17% Similarity=0.302 Sum_probs=65.3
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCC------CCcceEeecCCc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPS------DRQYYAAGVPGS 130 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~------~~~~f~~gvpgS 130 (360)
..-.+.|||||-|.--+-.-..-|+- =+.+=..|...||-..=++.+-. +...|++|. +
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~-------------~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~D--c 181 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGE-------------YIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAAD--C 181 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccc-------------eEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEec--c
Confidence 34567789999998655443211100 02222333333443333332211 234555554 6
Q ss_pred ccccc---C--CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 018119 131 FHNRL---F--PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQEL 205 (360)
Q Consensus 131 Fy~rl---f--P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 205 (360)
|+.+| + ++-++|++=|=+|+|+-=. + ..-...+|+.-++-|
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFe-----------------------t-----------ee~ar~~l~Nva~~L 227 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFE-----------------------T-----------EESARIALRNVAKCL 227 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeec-----------------------c-----------HHHHHHHHHHHHhhc
Confidence 77654 3 5556999999999997111 0 011345789999999
Q ss_pred ccCCeEEEEecC
Q 018119 206 ASGGLMALIVPC 217 (360)
Q Consensus 206 ~pGG~lvl~~~g 217 (360)
+|||.|+-+++-
T Consensus 228 kpGG~FIgTiPd 239 (389)
T KOG1975|consen 228 KPGGVFIGTIPD 239 (389)
T ss_pred CCCcEEEEecCc
Confidence 999999999843
No 131
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=94.39 E-value=0.34 Score=49.51 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=21.9
Q ss_pred HHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119 190 SAKGIESFLLARAQELASGGLMALIVPC 217 (360)
Q Consensus 190 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 217 (360)
+.+.-..+|..=++-|+|||+||.....
T Consensus 359 l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 359 LAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3445578899999999999999977543
No 132
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.34 E-value=0.13 Score=47.00 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=60.9
Q ss_pred EEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCC---CCCcceEeecCCccccccC
Q 018119 60 SIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLP---SDRQYYAAGVPGSFHNRLF 136 (360)
Q Consensus 60 ~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gvpgSFy~rlf 136 (360)
.++|+|||.|...+..... .|+..++=-|.-.+=.....+.+. -.+-.++.+-...+...++
T Consensus 20 l~lEIG~G~G~~l~~~A~~---------------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR---------------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF 84 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH---------------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred eEEEecCCCCHHHHHHHHH---------------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence 9999999999887766441 133444444443222211111110 0122344444555677889
Q ss_pred CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119 137 PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 137 P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
|++|++-++-++-==|-.+--. |-|+. =..||..=+.-|+|||.+.+..
T Consensus 85 ~~~~v~~i~i~FPDPWpK~rH~-----------krRl~-------------------~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 85 PPGSVDRIYINFPDPWPKKRHH-----------KRRLV-------------------NPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp TTTSEEEEEEES-----SGGGG-----------GGSTT-------------------SHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCchheEEEeCCCCCcccchh-----------hhhcC-------------------CchHHHHHHHHcCCCCEEEEEe
Confidence 9999999999988777443110 11221 1247888889999999987774
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=94.19 E-value=0.29 Score=46.55 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHhhHHHHHHHHHHHhccCCeEEEEecC
Q 018119 190 SAKGIESFLLARAQELASGGLMALIVPC 217 (360)
Q Consensus 190 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 217 (360)
..+....+|+.=++-|+|||+||.....
T Consensus 174 l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 174 ISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3344566888888999999999987644
No 134
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=94.16 E-value=0.04 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.8
Q ss_pred CceeEEeeecCCCCCccHHHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.+..+++|+|||||-.|+.+..
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~k 182 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAK 182 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHH
Confidence 3568999999999999988765
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.07 E-value=0.09 Score=46.35 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.7
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.-+|+|+|||+|..|..+++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~ 33 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLE 33 (169)
T ss_pred cCEEEEECCCccHHHHHHHh
Confidence 35899999999999998876
No 136
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.70 E-value=0.3 Score=46.25 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=34.5
Q ss_pred CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 138 KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 138 ~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
..-+|+++|.+--.| ||....+ ..+.+|++.-+.-|.|||+||+.
T Consensus 164 ~~~fDiIlcLSiTkW--------------------IHLNwgD------------~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 164 QPEFDIILCLSITKW--------------------IHLNWGD------------DGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccEEEEEEeeee--------------------Eeccccc------------HHHHHHHHHHHHhhCcCcEEEEc
Confidence 457888888888888 2322222 35788999999999999999987
No 137
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=93.51 E-value=0.33 Score=45.93 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEe
Q 018119 194 IESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
+..++..=.+-|+|||++++..
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 4567777778899999999886
No 138
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.39 E-value=0.099 Score=50.39 Aligned_cols=56 Identities=21% Similarity=0.119 Sum_probs=42.0
Q ss_pred cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEE
Q 018119 133 NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMA 212 (360)
Q Consensus 133 ~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 212 (360)
.-.+++.|+|...|.+.+||||.--- =..-|+.-.+.|+|||.+.
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~R-----------------------------------R~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRER-----------------------------------RERALEELLRVLRPGGNAL 140 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHH-----------------------------------HHHHHHHHHHHhcCCCceE
Confidence 45678899999999999999987210 1123555568999999999
Q ss_pred EEecCCCCCCC
Q 018119 213 LIVPCLPDGIS 223 (360)
Q Consensus 213 l~~~g~~~~~~ 223 (360)
+...+......
T Consensus 141 vyvwa~~q~~~ 151 (293)
T KOG1331|consen 141 VYVWALEQHQS 151 (293)
T ss_pred EEEehhhccCc
Confidence 99887765443
No 139
>PLN02366 spermidine synthase
Probab=93.34 E-value=0.32 Score=47.64 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=59.6
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCC--chHHH-Hhh----CCCCCcceEeecC
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSN--DFNAL-YKS----LPSDRQYYAAGVP 128 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~N--DFn~l-F~~----l~~~~~~f~~gvp 128 (360)
+++-+|+|+|||.|..+..++.. ++.-+|..-|+... |+..= |.. +.+++--++.+.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~---------------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH---------------SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC---------------CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH
Confidence 45789999999999855444321 11134444444321 11110 111 1112223555555
Q ss_pred CccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Q 018119 129 GSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASG 208 (360)
Q Consensus 129 gSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pG 208 (360)
..|-... |++++|++++-..-+|- |.. ..| -..|++.-++-|+||
T Consensus 155 ~~~l~~~-~~~~yDvIi~D~~dp~~---~~~------------------------~L~-------t~ef~~~~~~~L~pg 199 (308)
T PLN02366 155 VEFLKNA-PEGTYDAIIVDSSDPVG---PAQ------------------------ELF-------EKPFFESVARALRPG 199 (308)
T ss_pred HHHHhhc-cCCCCCEEEEcCCCCCC---chh------------------------hhh-------HHHHHHHHHHhcCCC
Confidence 5555433 56789999986554441 110 011 134777778889999
Q ss_pred CeEEEEe
Q 018119 209 GLMALIV 215 (360)
Q Consensus 209 G~lvl~~ 215 (360)
|.|+...
T Consensus 200 Gvlv~q~ 206 (308)
T PLN02366 200 GVVCTQA 206 (308)
T ss_pred cEEEECc
Confidence 9997653
No 140
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=92.88 E-value=4.5 Score=39.44 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=39.8
Q ss_pred HHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCccc--CCHHHHHHHHH
Q 018119 197 FLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYF--PTPQELKALLK 274 (360)
Q Consensus 197 FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~--ps~eE~~~~ie 274 (360)
-|+--+.-|.|||.||.+- .+-. | --+.|+.+|..-. +| -||-+ +|.+|+.++++
T Consensus 231 sl~gl~~al~pgG~lIyTg--QPwH-P--------Qle~IAr~LtsHr-~g-----------~~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 231 SLAGLARALEPGGYLIYTG--QPWH-P--------QLEMIARVLTSHR-DG-----------KAWVMRRRSQAEMDQLVE 287 (311)
T ss_pred HHHHHHHHhCCCcEEEEcC--CCCC-c--------chHHHHHHHhccc-CC-----------CceEEEecCHHHHHHHHH
Confidence 4666678899999998763 2211 1 1267888876321 12 25555 79999999999
Q ss_pred hCCcee
Q 018119 275 RNASFS 280 (360)
Q Consensus 275 ~~g~F~ 280 (360)
..| |+
T Consensus 288 ~aG-F~ 292 (311)
T PF12147_consen 288 AAG-FE 292 (311)
T ss_pred HcC-Cc
Confidence 986 64
No 141
>PRK01581 speE spermidine synthase; Validated
Probab=92.71 E-value=0.2 Score=50.24 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhccCCeEEEE
Q 018119 195 ESFLLARAQELASGGLMALI 214 (360)
Q Consensus 195 ~~FL~~Ra~EL~pGG~lvl~ 214 (360)
..|++.-.+-|+|||.|++.
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 34777778889999999887
No 142
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.70 E-value=0.53 Score=51.18 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=17.4
Q ss_pred eEEeeecCCCCCccHHHHH
Q 018119 59 FSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~ 77 (360)
-+|+|+||++|..|+.+..
T Consensus 540 ~rVLDlf~gtG~~sl~aa~ 558 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAAL 558 (702)
T ss_pred CeEEEcCCCCCHHHHHHHH
Confidence 5899999999999999876
No 143
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=92.43 E-value=0.11 Score=50.53 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.5
Q ss_pred eEEeeecCCCCCccHHHHH
Q 018119 59 FSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~ 77 (360)
-+|+|+|||||-.++.+..
T Consensus 163 ~~vLDvG~GSGILaiaA~k 181 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAK 181 (295)
T ss_dssp SEEEEES-TTSHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHHH
Confidence 4999999999998888754
No 144
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=92.41 E-value=0.77 Score=48.02 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC
Q 018119 25 EFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDL 104 (360)
Q Consensus 25 ~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDl 104 (360)
..|++.++...|.+.=.-++ .+ ..+.-.++|+|||.|..++..... .|+.-++=-|.
T Consensus 323 ~~q~~~~e~~~p~~~i~~ek-----lf---~~~~p~~lEIG~G~G~~~~~~A~~---------------~p~~~~iGiE~ 379 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEK-----LV---NEKRKVFLEIGFGMGEHFINQAKM---------------NPDALFIGVEV 379 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHH-----hC---CCCCceEEEECCCchHHHHHHHHh---------------CCCCCEEEEEe
Confidence 47888888888876411111 12 345678999999999988776551 12222222222
Q ss_pred CCCchHHHHhhCCC--CCcceEeecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHH
Q 018119 105 VSNDFNALYKSLPS--DRQYYAAGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEV 182 (360)
Q Consensus 105 p~NDFn~lF~~l~~--~~~~f~~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v 182 (360)
-.+=...+.+.... -.++.+...--.+....||++|+|-+|-++.==|-++-.. |-|+.
T Consensus 380 ~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~-----------krRl~-------- 440 (506)
T PRK01544 380 YLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQK-----------KKRIF-------- 440 (506)
T ss_pred eHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCc-----------ccccc--------
Confidence 11111111111000 0111111101123446689999999999998888443211 11222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119 183 VEAYSAESAKGIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 183 ~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
-..||+.=+.-|+|||.+.+..
T Consensus 441 -----------~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 441 -----------NKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -----------CHHHHHHHHHhcCCCCEEEEEc
Confidence 1247778888999999998764
No 145
>PLN02672 methionine S-methyltransferase
Probab=91.63 E-value=0.92 Score=51.49 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCC
Q 018119 195 ESFLLARAQELASGGLMALIVPCLP 219 (360)
Q Consensus 195 ~~FL~~Ra~EL~pGG~lvl~~~g~~ 219 (360)
.+++..-.+-|+|||.|++.++++.
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccH
Confidence 4477777789999999999987543
No 146
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=91.41 E-value=0.24 Score=49.06 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=61.4
Q ss_pred ceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119 57 KVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA 124 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~ 124 (360)
+.-+|+|.|||+|-.|+.... .|++.-.+..... -|.- -+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N-----------------~~~~-----------ii 111 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDN-----------------GLED-----------VI 111 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhc-----------------Cccc-----------eE
Confidence 357899999999999998865 3333333322221 1111 22
Q ss_pred eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119 125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE 204 (360)
Q Consensus 125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E 204 (360)
--+.|.-.+-.+|-..+|+++|-|-=+||-. +.=+...|-+|-+=
T Consensus 112 ~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~-----------------------------------EsMldsVl~ARdkw 156 (346)
T KOG1499|consen 112 TVIKGKVEDIELPVEKVDIIVSEWMGYFLLY-----------------------------------ESMLDSVLYARDKW 156 (346)
T ss_pred EEeecceEEEecCccceeEEeehhhhHHHHH-----------------------------------hhhhhhhhhhhhhc
Confidence 2333445555677789999999877777542 22366678899999
Q ss_pred hccCCeEE
Q 018119 205 LASGGLMA 212 (360)
Q Consensus 205 L~pGG~lv 212 (360)
|+|||.++
T Consensus 157 L~~~G~i~ 164 (346)
T KOG1499|consen 157 LKEGGLIY 164 (346)
T ss_pred cCCCceEc
Confidence 99999985
No 147
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=91.12 E-value=1.2 Score=41.88 Aligned_cols=101 Identities=18% Similarity=0.306 Sum_probs=64.5
Q ss_pred eEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceE
Q 018119 59 FSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYA 124 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~ 124 (360)
-.++|+|||.|.-.+.... ..+..+..+....+ .+.+.++-.|.. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~--l~Nlri~~~DA~-----~------------- 109 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG--LKNLRLLCGDAV-----E------------- 109 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC--CCcEEEEcCCHH-----H-------------
Confidence 5899999999988777665 23333333333322 114555555442 2
Q ss_pred eecCCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119 125 AGVPGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQE 204 (360)
Q Consensus 125 ~gvpgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~E 204 (360)
+...++|++|+|=++-++.==|-.+-. +|.||- -..||+.=++-
T Consensus 110 ------~l~~~~~~~sl~~I~i~FPDPWpKkRH-----------~KRRl~-------------------~~~fl~~~a~~ 153 (227)
T COG0220 110 ------VLDYLIPDGSLDKIYINFPDPWPKKRH-----------HKRRLT-------------------QPEFLKLYARK 153 (227)
T ss_pred ------HHHhcCCCCCeeEEEEECCCCCCCccc-----------cccccC-------------------CHHHHHHHHHH
Confidence 445567778999999999888844321 122332 13478888899
Q ss_pred hccCCeEEEEe
Q 018119 205 LASGGLMALIV 215 (360)
Q Consensus 205 L~pGG~lvl~~ 215 (360)
|+|||.+.+..
T Consensus 154 Lk~gG~l~~aT 164 (227)
T COG0220 154 LKPGGVLHFAT 164 (227)
T ss_pred ccCCCEEEEEe
Confidence 99999998874
No 148
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=91.02 E-value=0.73 Score=42.51 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHhccCCeEEE
Q 018119 192 KGIESFLLARAQELASGGLMAL 213 (360)
Q Consensus 192 ~D~~~FL~~Ra~EL~pGG~lvl 213 (360)
.|+..-|..+..+|++|-++|.
T Consensus 135 ~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 135 PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEE
Confidence 3566678888899999877654
No 149
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=89.83 E-value=1.6 Score=40.82 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=18.0
Q ss_pred CceeEEeeecCCCCCccHHHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.++-+|+|+||++|.-++.+..
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~ 88 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTAL 88 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHH
Confidence 3467999999999998887654
No 150
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=89.76 E-value=6.4 Score=39.93 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=20.6
Q ss_pred HHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119 189 ESAKGIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 189 Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
...+++..+++.=.+-|+|||.+++..
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 345567777777778899999998764
No 151
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=89.64 E-value=1.4 Score=42.60 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhccCCeEEEEe
Q 018119 193 GIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 193 D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
...+|+..=..-|+|||.+++..
T Consensus 216 ~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 216 VYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred HHHHHHHhhHHHcCCCcEEEEEE
Confidence 34558888888999999999886
No 152
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=89.05 E-value=1.1 Score=39.97 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=53.7
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-hCCCC-----Ccce--Eeec
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-SLPSD-----RQYY--AAGV 127 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-~l~~~-----~~~f--~~gv 127 (360)
....+|++||||+|--++.+... . ..-.|++.|++. --.+-+ ++..+ .++- ..-.
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~W 106 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDW 106 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--T
T ss_pred cCCceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEe
Confidence 34679999999999887777444 0 236789999875 222222 22111 1111 1111
Q ss_pred CCccccccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 018119 128 PGSFHNRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELAS 207 (360)
Q Consensus 128 pgSFy~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~p 207 (360)
+.......++..++|+|+.+=++.+ .+.+..+++.-..-|+|
T Consensus 107 g~~~~~~~~~~~~~D~IlasDv~Y~--------------------------------------~~~~~~L~~tl~~ll~~ 148 (173)
T PF10294_consen 107 GDELDSDLLEPHSFDVILASDVLYD--------------------------------------EELFEPLVRTLKRLLKP 148 (173)
T ss_dssp TS-HHHHHHS-SSBSEEEEES--S---------------------------------------GGGHHHHHHHHHHHBTT
T ss_pred cCcccccccccccCCEEEEecccch--------------------------------------HHHHHHHHHHHHHHhCC
Confidence 1112222334445666555544443 12345567777788999
Q ss_pred CCeEEEEecCCCC
Q 018119 208 GGLMALIVPCLPD 220 (360)
Q Consensus 208 GG~lvl~~~g~~~ 220 (360)
+|.+++...-|.+
T Consensus 149 ~~~vl~~~~~R~~ 161 (173)
T PF10294_consen 149 NGKVLLAYKRRRK 161 (173)
T ss_dssp -TTEEEEEE-S-T
T ss_pred CCEEEEEeCEecH
Confidence 9997777766643
No 153
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.53 E-value=0.62 Score=43.95 Aligned_cols=63 Identities=30% Similarity=0.415 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHH
Q 018119 194 IESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALL 273 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~i 273 (360)
+..++-.-+.-|+|||.|.++.=-.+... + | .+.-. --|.-+..=+++.+
T Consensus 204 Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-------~--f-~l~ps--------------------~RyAH~~~YVr~~l 253 (287)
T COG4976 204 LEGLFAGAAGLLAPGGLFAFSVETLPDDG-------G--F-VLGPS--------------------QRYAHSESYVRALL 253 (287)
T ss_pred hhhHHHHHHHhcCCCceEEEEecccCCCC-------C--e-ecchh--------------------hhhccchHHHHHHH
Confidence 66677888899999999998863222110 0 0 11111 12445566677888
Q ss_pred HhCCceeEEEEEEe
Q 018119 274 KRNASFSIEKFEPL 287 (360)
Q Consensus 274 e~~g~F~I~~~e~~ 287 (360)
+..| |+|..++..
T Consensus 254 ~~~G-l~~i~~~~t 266 (287)
T COG4976 254 AASG-LEVIAIEDT 266 (287)
T ss_pred HhcC-ceEEEeecc
Confidence 8784 998888754
No 154
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=88.43 E-value=0.3 Score=46.68 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=33.8
Q ss_pred eeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA 111 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~ 111 (360)
.-+|+|+|||+|..|..+.. .+++.++++.. .+.++++..|...-++..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~-----~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA-----EDNLTIIEGDALKVDLSE 103 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc-----cCceEEEEChhhcCCHHH
Confidence 46899999999999999887 44444444321 135888888876555443
No 155
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=88.16 E-value=2.9 Score=41.53 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=79.3
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCC--cceEeecCCccccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDR--QYYAAGVPGSFHNR 134 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~--~~f~~gvpgSFy~r 134 (360)
+--.|+|.|||+|..|+.+.+.=-..| |--.- -......+.|-..+ .-=+..+||--.+-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~v----------------YAvEA--S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKV----------------YAVEA--SEMAQYARKLVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceE----------------EEEeh--hHHHHHHHHHHhcCCccceEEEccCccccc
Confidence 346789999999999999877321111 00000 00011111111000 11345677887777
Q ss_pred cCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 135 LFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
-+| +.+|+++| -|-+-. .+| ++=++++|.+| +=|+|.|.|+=+
T Consensus 239 eLP-Ek~DviIS---------EPMG~m-----L~N---------------------ERMLEsYl~Ar-k~l~P~GkMfPT 281 (517)
T KOG1500|consen 239 ELP-EKVDVIIS---------EPMGYM-----LVN---------------------ERMLESYLHAR-KWLKPNGKMFPT 281 (517)
T ss_pred cCc-hhccEEEe---------ccchhh-----hhh---------------------HHHHHHHHHHH-hhcCCCCcccCc
Confidence 777 67888776 232211 222 23478889999 999999999766
Q ss_pred ecCCCCCCCCCCCchhhHHHHHH---------------HHHHHHHHcCCCCHhhhcccCCCccc
Q 018119 215 VPCLPDGISPGECSVLASADLLG---------------DCLMDMAKMGLLSEAQVDSFNLPSYF 263 (360)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~l~---------------~al~~mv~eG~i~~e~~d~f~~P~y~ 263 (360)
+ |+-.-.|.+.. ..+.+... ..|.--+-+|+..+.-+|.|.+-+..
T Consensus 282 ~-gdiHlAPFsDE--~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~Rilm 342 (517)
T KOG1500|consen 282 V-GDIHLAPFSDE--QLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILM 342 (517)
T ss_pred c-cceeecccchH--HHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceee
Confidence 5 33222233321 11112111 22232234466666777888766655
No 156
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=87.95 E-value=5.2 Score=39.43 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=20.2
Q ss_pred ceeEEeeecCCCCCccHHHHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNII 80 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii 80 (360)
...+|+|||||+|.=|..+++.+.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH
Confidence 345899999999999988887775
No 157
>PHA03412 putative methyltransferase; Provisional
Probab=87.21 E-value=0.27 Score=46.46 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=37.8
Q ss_pred eeEEeeecCCCCCccHHHHHHHHH--------------HHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcce
Q 018119 58 VFSIADLGCSVGPNTFNAVQNIID--------------SVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYY 123 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii~--------------~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f 123 (360)
..+|+|+|||+|..++.+...+.. +++.. .. ..+.+.+...|+-..+++.-|..+-.+++|+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~A--r~--n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLG--KR--IVPEATWINADALTTEFDTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHH--Hh--hccCCEEEEcchhcccccCCccEEEECCCCC
Confidence 469999999999999887654310 01111 11 1245778888876555554455554445555
Q ss_pred E
Q 018119 124 A 124 (360)
Q Consensus 124 ~ 124 (360)
.
T Consensus 126 ~ 126 (241)
T PHA03412 126 K 126 (241)
T ss_pred C
Confidence 4
No 158
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=86.98 E-value=5.1 Score=36.67 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=13.2
Q ss_pred eeEEeeecCCCCCccHHH
Q 018119 58 VFSIADLGCSVGPNTFNA 75 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~ 75 (360)
.-+|+|||||-|..-+.+
T Consensus 68 A~~VlDLGtGNG~~L~~L 85 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQL 85 (227)
T ss_pred ccceeeccCCchHHHHHH
Confidence 349999999988654443
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=86.00 E-value=2 Score=44.32 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.1
Q ss_pred ceeEEeeecCCCCCccHHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQN 78 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ 78 (360)
+..+|+|+|||+|+.+...++.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A 207 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQA 207 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHT
T ss_pred cceEEEEeCCCccHHHHHHHHH
Confidence 3589999999999999888764
No 160
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=85.13 E-value=1.1 Score=42.79 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred ceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEecCCC
Q 018119 140 SINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVPCLP 219 (360)
Q Consensus 140 S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~ 219 (360)
.+|++.|++||.=.++-++ .+.+-|+.-+.-|||||.|++......
T Consensus 158 ~~D~v~s~fcLE~a~~d~~----------------------------------~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLD----------------------------------EYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp SEEEEEEESSHHHH-SSHH----------------------------------HHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred chhhhhhhHHHHHHcCCHH----------------------------------HHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 5999999999988766321 234457777889999999999876433
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeEEEEEE
Q 018119 220 DGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSIEKFEP 286 (360)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I~~~e~ 286 (360)
..-. + | .-.+|.+.-+.+.++++|+++| |.|...+.
T Consensus 204 t~Y~--------------------v--G--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~~ 239 (256)
T PF01234_consen 204 TYYM--------------------V--G--------GHKFPCLPLNEEFVREALEEAG-FDIEDLEK 239 (256)
T ss_dssp SEEE--------------------E--T--------TEEEE---B-HHHHHHHHHHTT-EEEEEEEG
T ss_pred eeEE--------------------E--C--------CEecccccCCHHHHHHHHHHcC-CEEEeccc
Confidence 2100 0 1 1236777888999999999995 99999883
No 161
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=83.13 E-value=16 Score=35.14 Aligned_cols=113 Identities=24% Similarity=0.427 Sum_probs=68.2
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHh-------------hCCCC--Cc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYK-------------SLPSD--RQ 121 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~-------------~l~~~--~~ 121 (360)
++++|--.|||+|-=.-.+.-.+.+..... ....++|+=.|+- =..|=+ .+|.. ++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~------~~~~~~I~AtDId---~~~L~~A~~G~Y~~~~~~~~~~~~~~~r 166 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKL------AGFRVKILATDID---LSVLEKARAGIYPSRELLRGLPPELLRR 166 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccc------cCCceEEEEEECC---HHHHHHHhcCCCChhHhhccCCHHHHhh
Confidence 699999999999987666655555544320 1346999999984 333332 23321 46
Q ss_pred ceEeecCCccc--------------cccC---CCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHH
Q 018119 122 YYAAGVPGSFH--------------NRLF---PKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVE 184 (360)
Q Consensus 122 ~f~~gvpgSFy--------------~rlf---P~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ 184 (360)
||.-+..|+|- +-+. ..+-+|+|||=+.|=.+++ ++
T Consensus 167 yF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~-------------------------~~-- 219 (268)
T COG1352 167 YFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE-------------------------ET-- 219 (268)
T ss_pred hEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH-------------------------HH--
Confidence 78777766442 1111 2244666666555555443 11
Q ss_pred HHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 185 AYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 185 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
-.+.|+.=+.-|+|||.|++-
T Consensus 220 ---------q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 220 ---------QERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ---------HHHHHHHHHHHhCCCCEEEEc
Confidence 123455667889999998653
No 162
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=80.29 E-value=29 Score=32.47 Aligned_cols=21 Identities=5% Similarity=-0.097 Sum_probs=18.2
Q ss_pred ceeEEeeecCCCCCccHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
..-+|++-|||.|.+...+.+
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~ 63 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS 63 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh
Confidence 346999999999999998866
No 163
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=79.09 E-value=18 Score=33.61 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=18.7
Q ss_pred CcccCCHHHHHHHHHhCCceeEEEEEEec
Q 018119 260 PSYFPTPQELKALLKRNASFSIEKFEPLA 288 (360)
Q Consensus 260 P~y~ps~eE~~~~ie~~g~F~I~~~e~~~ 288 (360)
|=|.=+.+||++++. +.|+|+.++..+
T Consensus 166 PPf~v~~~ev~~l~~--~~f~i~~l~~~~ 192 (218)
T PF05724_consen 166 PPFSVTEEEVRELFG--PGFEIEELEEED 192 (218)
T ss_dssp SS----HHHHHHHHT--TTEEEEEEEEEE
T ss_pred cCCCCCHHHHHHHhc--CCcEEEEEeccc
Confidence 445557899999998 359999999753
No 164
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=78.90 E-value=2.3 Score=35.45 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=32.5
Q ss_pred eeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEe
Q 018119 141 INFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 141 ~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
+|++.|.+..-| ||+.. -..-+.+|++.-+.-|+|||.|+++-
T Consensus 2 yDvilclSVtkW--------------------IHLn~------------GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 2 YDVILCLSVTKW--------------------IHLNW------------GDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp EEEEEEES-HHH--------------------HHHHH------------HHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred ccEEEEEEeeEE--------------------EEecC------------cCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 689999999999 33322 23457789999999999999999984
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=77.89 E-value=2.5 Score=39.62 Aligned_cols=22 Identities=36% Similarity=0.289 Sum_probs=18.6
Q ss_pred ceeEEeeecCCCCCccHHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQN 78 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ 78 (360)
+.-+++|+|||+|..|..+++.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ 96 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK 96 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc
Confidence 4569999999999999888664
No 166
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=77.68 E-value=6.1 Score=37.11 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=18.3
Q ss_pred ceeEEeeecCCCCCccHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
..-+|+|+|||+|..|..+.+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH
Confidence 356899999999999988876
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=77.68 E-value=5.5 Score=37.64 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=18.1
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.-+|+|+|||+|..|..+..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAK 49 (258)
T ss_pred cCeEEEEeCccCHHHHHHHH
Confidence 46899999999999999877
No 168
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=76.81 E-value=74 Score=30.69 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHH
Q 018119 35 KAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 35 ~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.+-|.+++.+.++.... .++..+|+==|||-|+.+..+..
T Consensus 37 ~~~I~~~L~~~~p~~~~---~~~~~~VLVPGsGLGRLa~Eia~ 76 (270)
T PF07942_consen 37 YSPILDELESLFPPAGS---DRSKIRVLVPGSGLGRLAWEIAK 76 (270)
T ss_pred HHHHHHHHHHhhccccc---CCCccEEEEcCCCcchHHHHHhh
Confidence 33444555554431111 45689999999999999887765
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=76.77 E-value=6.6 Score=38.77 Aligned_cols=19 Identities=11% Similarity=-0.019 Sum_probs=14.7
Q ss_pred ceeEEeeecCCCCCccHHH
Q 018119 57 KVFSIADLGCSVGPNTFNA 75 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~ 75 (360)
...+|+|+|||+|.-..++
T Consensus 114 ~~~~vLDIGtGag~I~~lL 132 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLI 132 (321)
T ss_pred CCceEEEecCCccHHHHHH
Confidence 4689999999998554444
No 170
>PLN02823 spermine synthase
Probab=76.29 E-value=10 Score=37.68 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=16.9
Q ss_pred CceeEEeeecCCCCCccHHHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
+++-+|+-+|+|.|..+..+++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~ 123 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLR 123 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHh
Confidence 4567899999999977665544
No 171
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=75.89 E-value=4.5 Score=34.51 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.7
Q ss_pred CceeEEeeecCCCCCccHHHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
..+.+|+|+|||.|..|+.+..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH
Confidence 5689999999999999998866
No 172
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=75.43 E-value=3.5 Score=40.08 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=34.3
Q ss_pred eeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCc
Q 018119 58 VFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSND 108 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~ND 108 (360)
.-+|+|+|||.|..|..++. .+++.+++.....+ ..+.++++..|....|
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKTE 98 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhhc
Confidence 45899999999999998886 35566665544321 1235888888875444
No 173
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.93 E-value=1.6 Score=39.94 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=32.8
Q ss_pred ceeEEeeecCCCCCccHHHHH-------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQ-------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA 111 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~-------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~ 111 (360)
+.-+|+|+|||+|..++...- ..+++.++.+.... -.+.++-.|.. ||+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~--~~~~ 107 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVS--DFRG 107 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchh--hcCC
Confidence 346799999999999988754 55666665554421 24666666663 4444
No 174
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=74.81 E-value=3.6 Score=40.08 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=17.6
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.-+|+|+|||+|..++.+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 36899999999999988875
No 175
>PRK04148 hypothetical protein; Provisional
Probab=74.56 E-value=8.2 Score=33.29 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=28.8
Q ss_pred ceeEEeeecCCCCC-ccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHH
Q 018119 57 KVFSIADLGCSVGP-NTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA 111 (360)
Q Consensus 57 ~~~~IaDlGCs~G~-Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~ 111 (360)
+..+|+|+|||.|. .+..+.+ ..++..++. -.+++..|+-..|+.-
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHH
Confidence 35789999999997 5544443 222222211 2678888887766654
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=72.48 E-value=15 Score=35.23 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=42.5
Q ss_pred eeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALY 113 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF 113 (360)
.-+|.++|+|.|..|..+++ .++..++++.. ....++|+..|.=.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhc
Confidence 68999999999999999998 56666666543 234699999999999999875
No 177
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=69.76 E-value=4 Score=36.01 Aligned_cols=80 Identities=16% Similarity=0.060 Sum_probs=39.2
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL 135 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl 135 (360)
.+..+++|+|||.|.-|-.+++.. .+.-.|+=.|+...+=-.....+. ..++-...-. -....
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~~~~~~~~~i~--~d~~~~~~~~-~i~~~ 84 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPMDPLQNVSFIQ--GDITNPENIK-DIRKL 84 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSSTGS-TTEEBTT--GGGEEEEHSH-HGGGS
T ss_pred ccccEEEEcCCcccceeeeeeecc--------------cccceEEEEeccccccccceeeee--cccchhhHHH-hhhhh
Confidence 368999999999999987775544 134667777776541000000000 1111111111 22333
Q ss_pred CCC--CceeEEEecccccc
Q 018119 136 FPK--ASINFFHCSYGLQW 152 (360)
Q Consensus 136 fP~--~S~h~~~Ss~alHW 152 (360)
++. ..+|+++|=.+..+
T Consensus 85 ~~~~~~~~dlv~~D~~~~~ 103 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNV 103 (181)
T ss_dssp HGTTTCSESEEEE------
T ss_pred ccccccCcceeccccccCC
Confidence 433 78999998886665
No 178
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=69.23 E-value=6.2 Score=36.11 Aligned_cols=19 Identities=16% Similarity=0.058 Sum_probs=16.3
Q ss_pred eEEeeecCCCCCccHHHHH
Q 018119 59 FSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~ 77 (360)
-+|+|+|||+|.-++.+++
T Consensus 55 ~~vLDl~~GsG~l~l~~ls 73 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALS 73 (199)
T ss_pred CEEEEcCCCccHHHHHHHH
Confidence 5899999999999987654
No 179
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=69.23 E-value=18 Score=33.81 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=60.0
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCCCcceEeecCCcccccc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSDRQYYAAGVPGSFHNRL 135 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rl 135 (360)
...++++|+||=+..|.+.. .+-|.|.--||-+. .+.+.-. -|.+|-
T Consensus 50 ~~~lrlLEVGals~~N~~s~------------------~~~fdvt~IDLns~-----------~~~I~qq----DFm~rp 96 (219)
T PF11968_consen 50 RPKLRLLEVGALSTDNACST------------------SGWFDVTRIDLNSQ-----------HPGILQQ----DFMERP 96 (219)
T ss_pred cccceEEeecccCCCCcccc------------------cCceeeEEeecCCC-----------CCCceee----ccccCC
Confidence 34699999999888876643 12355666666421 0111111 255565
Q ss_pred CC---CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCe--
Q 018119 136 FP---KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGL-- 210 (360)
Q Consensus 136 fP---~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~-- 210 (360)
+| ++++|+|.+|-.|.. ||.... +| .-|+.-.+=|+|+|.
T Consensus 97 lp~~~~e~FdvIs~SLVLNf---VP~p~~--------RG------------------------~Ml~r~~~fL~~~g~~~ 141 (219)
T PF11968_consen 97 LPKNESEKFDVISLSLVLNF---VPDPKQ--------RG------------------------EMLRRAHKFLKPPGLSL 141 (219)
T ss_pred CCCCcccceeEEEEEEEEee---CCCHHH--------HH------------------------HHHHHHHHHhCCCCccC
Confidence 54 789999999999999 775432 11 124445577999999
Q ss_pred ---EEEEecC
Q 018119 211 ---MALIVPC 217 (360)
Q Consensus 211 ---lvl~~~g 217 (360)
|+++++-
T Consensus 142 ~~~LFlVlP~ 151 (219)
T PF11968_consen 142 FPSLFLVLPL 151 (219)
T ss_pred cceEEEEeCc
Confidence 8888753
No 180
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=67.78 E-value=15 Score=35.35 Aligned_cols=131 Identities=20% Similarity=0.278 Sum_probs=65.7
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh----CCC-CCcceEeecCCc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS----LPS-DRQYYAAGVPGS 130 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~----l~~-~~~~f~~gvpgS 130 (360)
....+|+|-.||+|..-+.++..+.+.-.. .++.+++-.|. |...-.... |.. ....+.....-+
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei--~~~~~~la~~nl~l~~~~~~~~~i~~~d~ 114 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEI--DPEAVALAKLNLLLHGIDNSNINIIQGDS 114 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEEEES-T
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecC--cHHHHHHHHhhhhhhcccccccccccccc
Confidence 446789999999999887777666543111 24578887777 233221111 111 111111223335
Q ss_pred cccccCC-CCceeEEEec--cccc-ccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 018119 131 FHNRLFP-KASINFFHCS--YGLQ-WLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLARAQELA 206 (360)
Q Consensus 131 Fy~rlfP-~~S~h~~~Ss--~alH-WLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 206 (360)
|-...+. ...+|+|+++ +... | ......... -|.++ ..+.. ..|+ .|+..--+-|+
T Consensus 115 l~~~~~~~~~~~D~ii~NPPf~~~~~---~~~~~~~~~--~~~~~------~~~~~--------~~~~-~Fi~~~l~~Lk 174 (311)
T PF02384_consen 115 LENDKFIKNQKFDVIIGNPPFGSKEW---KDEELEKDE--RFKKY------FPPKS--------NAEY-AFIEHALSLLK 174 (311)
T ss_dssp TTSHSCTST--EEEEEEE--CTCES----STGGGCTTC--CCTTC------SSSTT--------EHHH-HHHHHHHHTEE
T ss_pred ccccccccccccccccCCCCcccccc---ccccccccc--ccccc------CCCcc--------chhh-hhHHHHHhhcc
Confidence 5555555 6899999997 2222 4 111111100 11111 00000 1122 38888889999
Q ss_pred cCCeEEEEec
Q 018119 207 SGGLMALIVP 216 (360)
Q Consensus 207 pGG~lvl~~~ 216 (360)
+||++++.++
T Consensus 175 ~~G~~~~Ilp 184 (311)
T PF02384_consen 175 PGGRAAIILP 184 (311)
T ss_dssp EEEEEEEEEE
T ss_pred cccceeEEec
Confidence 9999998885
No 181
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=66.71 E-value=22 Score=27.63 Aligned_cols=25 Identities=20% Similarity=0.028 Sum_probs=18.4
Q ss_pred HHHHHHHHhccCCeEEEEecCCCCC
Q 018119 197 FLLARAQELASGGLMALIVPCLPDG 221 (360)
Q Consensus 197 FL~~Ra~EL~pGG~lvl~~~g~~~~ 221 (360)
.+....+-|+|||.+++........
T Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 137 ALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred HHHHHHHhcCCCcEEEEEeccCCCC
Confidence 4555667799999999998765543
No 182
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=64.29 E-value=7 Score=37.95 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=26.5
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCC
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLV 105 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp 105 (360)
++++|-.-|||+|-=.-.+.--+.+.... ....++|+=.|+-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~-------~~~~~~I~atDIs 156 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGT-------APGRWKVFASDID 156 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcc-------cCCCcEEEEEECC
Confidence 46999999999996555443333332211 0114888888884
No 183
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=63.23 E-value=8.7 Score=39.35 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=17.3
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.-+|+|+|||+|..|+.+..
T Consensus 298 ~~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CCEEEEEeccCCHHHHHHHH
Confidence 36899999999999988765
No 184
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=62.87 E-value=22 Score=36.08 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=17.6
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.-+|+|+|||+|..|+.+..
T Consensus 293 ~~~vLDl~cG~G~~sl~la~ 312 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAK 312 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHH
Confidence 46899999999999998765
No 185
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=61.40 E-value=15 Score=33.71 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHH
Q 018119 34 AKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNII 80 (360)
Q Consensus 34 ~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii 80 (360)
.++.||...++ +. ...+--.+++|||+|--|-.+++.+.
T Consensus 28 LlDaLekd~~e-L~-------~~~~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 28 LLDALEKDAAE-LK-------GHNPEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred HHHHHHHHHHH-Hh-------hcCceeEEEecCCcchHHHHHHHhcC
Confidence 34555655555 21 12367899999999999988888766
No 186
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=59.96 E-value=11 Score=35.91 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCceeEEeeecCCCCCccHHHHH--------------HHHHHHHHHhhhcCCCCccceEEecCCCC
Q 018119 55 SSKVFSIADLGCSVGPNTFNAVQ--------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVS 106 (360)
Q Consensus 55 ~~~~~~IaDlGCs~G~Nt~~~~~--------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~ 106 (360)
.+.+-+|+|+|||--|.|+..|. .+++.+.......+ ++..+-+.|+-+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~---~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG---VPHDARVRDLLS 165 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTT
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC---CCcceeEeeeec
Confidence 35589999999999888887765 45555555444332 456677777753
No 187
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=58.36 E-value=9.7 Score=36.06 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=19.8
Q ss_pred CceeEEeeecCCCCCccHHHHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQN 78 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ 78 (360)
.+--+++|+|.|+|..|-.+++.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc
Confidence 56789999999999999888653
No 188
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=56.16 E-value=58 Score=31.34 Aligned_cols=21 Identities=33% Similarity=0.249 Sum_probs=18.1
Q ss_pred ceeEEeeecCCCCCccHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
+..+++|+|.|+|.-|..+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~ 114 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP 114 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh
Confidence 578999999999999988744
No 189
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=54.32 E-value=1.7e+02 Score=27.97 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=42.1
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhhCCCC-CcceEeecCCccccc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKSLPSD-RQYYAAGVPGSFHNR 134 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~l~~~-~~~f~~gvpgSFy~r 134 (360)
-.+.+|+|+|||.|.-+. ++..+ +.. ..+++.-|. +.....+-+.|-.. ...-..-....++..
T Consensus 32 f~P~~vLD~GsGpGta~w-Aa~~~-------~~~------~~~~~~vd~-s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 96 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALW-AAREV-------WPS------LKEYTCVDR-SPEMLELAKRLLRAGPNNRNAEWRRVLYRD 96 (274)
T ss_pred CCCceEEEecCChHHHHH-HHHHH-------hcC------ceeeeeecC-CHHHHHHHHHHHhcccccccchhhhhhhcc
Confidence 346799999999997443 22222 220 134555563 34555544443211 000000112334433
Q ss_pred cCCCCceeEEEeccccccc
Q 018119 135 LFPKASINFFHCSYGLQWL 153 (360)
Q Consensus 135 lfP~~S~h~~~Ss~alHWL 153 (360)
..+-..-|+|+++++|-=|
T Consensus 97 ~~~~~~~DLvi~s~~L~EL 115 (274)
T PF09243_consen 97 FLPFPPDDLVIASYVLNEL 115 (274)
T ss_pred cccCCCCcEEEEehhhhcC
Confidence 3333344999999998643
No 190
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=53.49 E-value=45 Score=34.68 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEecC
Q 018119 192 KGIESFLLARAQELASGGLMALIVPC 217 (360)
Q Consensus 192 ~D~~~FL~~Ra~EL~pGG~lvl~~~g 217 (360)
+--..+|..=++-|+|||+||-+.+.
T Consensus 219 ~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 219 ATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 33456888888899999999877644
No 191
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=53.23 E-value=15 Score=33.90 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=18.8
Q ss_pred CceeEEeeecCCCCCccHHHHHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNI 79 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~i 79 (360)
..-.+|+|+||+.|.=|-.+++..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~ 91 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRV 91 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhh
Confidence 446899999999999887665543
No 192
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=52.74 E-value=15 Score=36.76 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=17.0
Q ss_pred eEEeeecCCCCCccHHHHH
Q 018119 59 FSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~ 77 (360)
-+|+|+|||+|..|+.+.+
T Consensus 235 ~~vLDL~cG~G~~~l~la~ 253 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAG 253 (374)
T ss_pred CEEEEccCCccHHHHHHhh
Confidence 4899999999999998875
No 193
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=51.77 E-value=22 Score=29.64 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=14.9
Q ss_pred EEeeecCCCCCccHHHHH
Q 018119 60 SIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 60 ~IaDlGCs~G~Nt~~~~~ 77 (360)
+|+|+||+.|.-|+.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~ 18 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFAR 18 (143)
T ss_pred CEEEccCCccHHHHHHHH
Confidence 489999999998877654
No 194
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=51.15 E-value=73 Score=30.07 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=36.8
Q ss_pred ceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCchHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNA 111 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~ 111 (360)
+.-.|+|+|.|.|.-|..+.+ ..++.+++++. ..+.++++..|.-.=|...
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGG
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHH
Confidence 468999999999999999987 45666666543 2356899998876544444
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=47.88 E-value=11 Score=34.09 Aligned_cols=20 Identities=15% Similarity=-0.021 Sum_probs=17.7
Q ss_pred eeEEeeecCCCCCccHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.-+++|++||+|..++.+++
T Consensus 50 g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred CCEEEEecCCCcHHHHHHHh
Confidence 35899999999999998876
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=46.75 E-value=38 Score=33.03 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEec
Q 018119 192 KGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 192 ~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
.-+..+|..=.+-|+|||+|++...
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visf 237 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISF 237 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4578889999999999999998853
No 197
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=46.50 E-value=9.7 Score=35.46 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=14.9
Q ss_pred ceeEEeeecCCCCCccHHH
Q 018119 57 KVFSIADLGCSVGPNTFNA 75 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~ 75 (360)
+-.-+||+|||=|...+.+
T Consensus 60 ~kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKL 78 (249)
T ss_pred ccceEEeeccCccchhhhc
Confidence 3478999999999766544
No 198
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=46.36 E-value=20 Score=35.90 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.2
Q ss_pred CceeEEeeecCCCCCccHHHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
..-.+++|+|||+|.-|-.+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~ 231 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVR 231 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHH
Confidence 3457999999999999977754
No 199
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=46.01 E-value=13 Score=33.59 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=45.9
Q ss_pred HHHHHhhHHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCH
Q 018119 187 SAESAKGIESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTP 266 (360)
Q Consensus 187 ~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~ 266 (360)
....-+|-..|++. +|+-.= |.. .+.+...+.+.|++||.+|+++-|+.-+-|+=|-|||.
T Consensus 15 L~aI~~~SKdFFqL--kEvEkL--------GSK---------K~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 15 LEAIFHDSKDFFQL--KEVEKL--------GSK---------KQIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred HHHHHhccHHHHHH--HHHHHh--------ccc---------cccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 34445677788887 565441 211 23466789999999999999999999999999999864
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=45.31 E-value=60 Score=32.38 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=28.1
Q ss_pred eEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCC
Q 018119 59 FSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDL 104 (360)
Q Consensus 59 ~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDl 104 (360)
-+++|++||+|..|+.+.. ..++..++.....+ ...++++..|.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~--~~~v~~~~~d~ 263 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANG--IDNVQIIRMSA 263 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhC--CCcEEEEECCH
Confidence 3599999999999996654 34444444333222 12477777777
No 201
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.38 E-value=15 Score=33.37 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHH
Q 018119 233 ADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQ 267 (360)
Q Consensus 233 ~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~e 267 (360)
--.+.+.++.||++|+|.-|++-+-|+=|-||+.+
T Consensus 29 ~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 29 SMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred hhhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 36899999999999999999999999999999754
No 202
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=40.51 E-value=34 Score=26.92 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHh
Q 018119 232 SADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKR 275 (360)
Q Consensus 232 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~ 275 (360)
+...+..+|+.|...|.+++++-|....|.+.|+.. -+.+|..
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sqq-ARrLLD~ 54 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQQ-ARRLLDL 54 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChHHH-HHHHHHH
Confidence 345688899999999999999999999999998754 3555543
No 203
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=40.22 E-value=29 Score=24.69 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCCCHh
Q 018119 234 DLLGDCLMDMAKMGLLSEA 252 (360)
Q Consensus 234 ~~l~~al~~mv~eG~i~~e 252 (360)
..|.++|.+|+.+|.|+++
T Consensus 13 ~aL~dtLDeli~~~~I~p~ 31 (49)
T PF02268_consen 13 IALTDTLDELIQEGKITPQ 31 (49)
T ss_dssp HHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHHHHHHcCCCCHH
Confidence 5899999999999999865
No 204
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=39.63 E-value=15 Score=32.69 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=16.4
Q ss_pred EEeeecCCCCCccHHHHHH
Q 018119 60 SIADLGCSVGPNTFNAVQN 78 (360)
Q Consensus 60 ~IaDlGCs~G~Nt~~~~~~ 78 (360)
+|+|.-||.|.||+.+...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6899999999999999884
No 205
>PF14904 FAM86: Family of unknown function
Probab=39.50 E-value=32 Score=28.19 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=26.2
Q ss_pred HHHHHHhhhHHHHhh--hchhHHHHHHHHHHHH
Q 018119 303 VSHLRANLEILVKEH--FGNGIIEDLFDRFSKK 333 (360)
Q Consensus 303 ~~~iRA~~e~~l~~h--fg~~i~delf~r~~~~ 333 (360)
..|.|+|+..+|.++ .+.++.|+||+.|++.
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 467899999999965 5889999999999864
No 206
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.05 E-value=27 Score=32.72 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=23.3
Q ss_pred ceeecCCCHHHHHHHHHHHHhhHHHHHHHHHHHhccCCeEEEEec
Q 018119 172 RIYYSRGPNEVVEAYSAESAKGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 172 ~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
+||+..+.+++.++|.+| |+|||+|++-..
T Consensus 165 aIhvGAaa~~~pq~l~dq---------------L~~gGrllip~~ 194 (237)
T KOG1661|consen 165 AIHVGAAASELPQELLDQ---------------LKPGGRLLIPVG 194 (237)
T ss_pred eEEEccCccccHHHHHHh---------------hccCCeEEEeec
Confidence 688877777777777764 999999987653
No 207
>PRK11524 putative methyltransferase; Provisional
Probab=38.95 E-value=51 Score=31.53 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEe
Q 018119 194 IESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
+..+|..-.+-|+|||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5678888888999999999864
No 208
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=37.75 E-value=25 Score=32.14 Aligned_cols=114 Identities=20% Similarity=0.391 Sum_probs=56.1
Q ss_pred CceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCCCchHHHHhh------------CCCC--Cc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLEFQVFFNDLVSNDFNALYKS------------LPSD--RQ 121 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlp~NDFn~lF~~------------l~~~--~~ 121 (360)
.++++|-..|||+|-=+-.+.--+-+..... ..-.++|+=.|+-. ..|-+. +|+. ..
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~------~~~~~~I~atDi~~---~~L~~Ar~G~Y~~~~~~~~~~~~~~r 100 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGA------LGWDFRILATDISP---SALEKARAGIYPERSLRGLPPAYLRR 100 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-------TT-SEEEEEEES-H---HHHHHHHHTEEEGGGGTTS-HHHHHH
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhccc------CCCceEEEEEECCH---HHHHHHHhCCCCHHHHhhhHHHHHHH
Confidence 4689999999999965555433333322211 11258888888842 222222 2211 24
Q ss_pred ceEeecCCccc-----------------cccCCCCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHH
Q 018119 122 YYAAGVPGSFH-----------------NRLFPKASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVE 184 (360)
Q Consensus 122 ~f~~gvpgSFy-----------------~rlfP~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ 184 (360)
||.-..++.|- +.-.|.+.+|+|+|-+.|-.+... .
T Consensus 101 yf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~-------------------------~-- 153 (196)
T PF01739_consen 101 YFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPE-------------------------T-- 153 (196)
T ss_dssp HEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HH-------------------------H--
T ss_pred hccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHH-------------------------H--
Confidence 55433332221 123455678888888877775441 1
Q ss_pred HHHHHHHhhHHHHHHHHHHHhccCCeEEEE
Q 018119 185 AYSAESAKGIESFLLARAQELASGGLMALI 214 (360)
Q Consensus 185 ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 214 (360)
-.+.|+.=++-|+|||.|++.
T Consensus 154 ---------~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 154 ---------QQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp ---------HHHHHHHHGGGEEEEEEEEE-
T ss_pred ---------HHHHHHHHHHHcCCCCEEEEe
Confidence 123566667899999998775
No 209
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=36.90 E-value=37 Score=33.74 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.7
Q ss_pred EEeeecCCCCCccHHHHH
Q 018119 60 SIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 60 ~IaDlGCs~G~Nt~~~~~ 77 (360)
+|+|+|||+|..|+.+..
T Consensus 200 ~vlDl~~G~G~~sl~la~ 217 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQ 217 (353)
T ss_pred cEEEEeccccHHHHHHHH
Confidence 699999999999996654
No 210
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=36.58 E-value=14 Score=24.18 Aligned_cols=15 Identities=40% Similarity=0.853 Sum_probs=8.3
Q ss_pred CcccCCHHHHHHHHH
Q 018119 260 PSYFPTPQELKALLK 274 (360)
Q Consensus 260 P~y~ps~eE~~~~ie 274 (360)
|.+.||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 678899998877664
No 211
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=36.04 E-value=34 Score=21.67 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCCHhhhc
Q 018119 239 CLMDMAKMGLLSEAQVD 255 (360)
Q Consensus 239 al~~mv~eG~i~~e~~d 255 (360)
.|.+|.+.|.|+++++.
T Consensus 7 ~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHcCCCCHHHHH
Confidence 47788999999998865
No 212
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=35.17 E-value=63 Score=29.03 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHh
Q 018119 232 SADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKR 275 (360)
Q Consensus 232 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~ 275 (360)
+|+-+-+-++.|+++|.++++..+ +.....+++|+.+.|+.
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 688899999999999999998766 44558899999888753
No 213
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=35.15 E-value=26 Score=31.86 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCH
Q 018119 230 LASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTP 266 (360)
Q Consensus 230 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~ 266 (360)
+.+|..+.++|+.||..|++..+++-.-|.=|-|||.
T Consensus 38 gIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~ 74 (203)
T KOG3433|consen 38 GIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSE 74 (203)
T ss_pred ceehhHHHHHHHHHhccchHHHHHhcccccccccchH
Confidence 4567899999999999999999999999999999975
No 214
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=34.82 E-value=18 Score=30.24 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=15.8
Q ss_pred CceeEEeeecCCCCCccHHHH
Q 018119 56 SKVFSIADLGCSVGPNTFNAV 76 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~ 76 (360)
.+.....|+|||-|-..-.+.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred CCCCceEEccCCchHHHHHHH
Confidence 457889999999986555443
No 215
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=34.55 E-value=80 Score=31.01 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEec
Q 018119 192 KGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 192 ~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
.-+..+|..-.+-|+|||+|++...
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISf 241 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISF 241 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3577888888899999999998853
No 216
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=31.72 E-value=15 Score=32.60 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.2
Q ss_pred ceeEEeeecCCCCCccHHH
Q 018119 57 KVFSIADLGCSVGPNTFNA 75 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~ 75 (360)
...+++||||+.|-.++..
T Consensus 48 Egkkl~DLgcgcGmLs~a~ 66 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF 66 (185)
T ss_pred cCcchhhhcCchhhhHHHh
Confidence 4578999999999877443
No 217
>smart00400 ZnF_CHCC zinc finger.
Probab=31.28 E-value=39 Score=24.03 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=18.6
Q ss_pred eeEEeeecCCCCCccHHHHHHHH
Q 018119 58 VFSIADLGCSVGPNTFNAVQNII 80 (360)
Q Consensus 58 ~~~IaDlGCs~G~Nt~~~~~~ii 80 (360)
.-..-++||+.|.+.+.+++.+-
T Consensus 21 kn~~~Cf~cg~gGd~i~fv~~~~ 43 (55)
T smart00400 21 KQFFHCFGCGAGGNVISFLMKYD 43 (55)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH
Confidence 34567899999999999988663
No 218
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=30.77 E-value=41 Score=33.95 Aligned_cols=49 Identities=10% Similarity=-0.082 Sum_probs=32.7
Q ss_pred CCCchHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHH
Q 018119 15 DGQYSYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQ 77 (360)
Q Consensus 15 ~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~ 77 (360)
.++-.|+-|...-+.....+...+. . ..+..+|+|++||+|.-++.+..
T Consensus 29 ~~~vFyqp~~~~nrdl~~~v~~~~~----~----------~~~~~~vLDl~aGsG~~~l~~a~ 77 (382)
T PRK04338 29 WAPVFYNPRMELNRDISVLVLRAFG----P----------KLPRESVLDALSASGIRGIRYAL 77 (382)
T ss_pred CCCeeeCccccchhhHHHHHHHHHH----h----------hcCCCEEEECCCcccHHHHHHHH
Confidence 3556899888777765554333321 1 11246899999999999988744
No 219
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=29.88 E-value=1.1e+02 Score=29.37 Aligned_cols=44 Identities=16% Similarity=0.349 Sum_probs=32.3
Q ss_pred HHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhc
Q 018119 197 FLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVD 255 (360)
Q Consensus 197 FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d 255 (360)
.|..-++.|+|||.+++..+. ++.+...+..|.+.|.++.+.++
T Consensus 177 ~le~~~~~Lkpgg~~~~y~P~---------------veQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 177 VLEHVSDALKPGGVVVVYSPT---------------VEQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred HHHHHHHHhCCCcEEEEEcCC---------------HHHHHHHHHHHHhcCccchhhhe
Confidence 467778999999999887532 36677777777777888655444
No 220
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=29.56 E-value=90 Score=28.66 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHhCCceeEEEEEEe
Q 018119 264 PTPQELKALLKRNASFSIEKFEPL 287 (360)
Q Consensus 264 ps~eE~~~~ie~~g~F~I~~~e~~ 287 (360)
....+++.++.++| |.|.+-+.+
T Consensus 103 ~~~~~LR~~L~~~g-f~I~~E~lv 125 (205)
T PF04816_consen 103 THAYELRRWLYENG-FEIIDEDLV 125 (205)
T ss_dssp S-HHHHHHHHHHTT-EEEEEEEEE
T ss_pred CChHHHHHHHHHCC-CEEEEeEEE
Confidence 36789999999994 998776654
No 221
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=28.83 E-value=27 Score=34.33 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEec
Q 018119 192 KGIESFLLARAQELASGGLMALIVP 216 (360)
Q Consensus 192 ~D~~~FL~~Ra~EL~pGG~lvl~~~ 216 (360)
.-+..+|..=.+-|+|||++++...
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISF 242 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISF 242 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 3478888888899999999998853
No 222
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=27.75 E-value=39 Score=35.32 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.7
Q ss_pred ceeEEeeecCCCCCccHHHHHHH
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNI 79 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~i 79 (360)
+..+|+|.|||+|...+.++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~ 53 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKN 53 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHH
Confidence 56899999999999988887665
No 223
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=27.49 E-value=53 Score=24.12 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCe
Q 018119 184 EAYSAESAKGIESFLLARAQELASGGL 210 (360)
Q Consensus 184 ~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 210 (360)
+.+++-|..||..++..+...|+.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 567778889999999999999998664
No 224
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=27.11 E-value=64 Score=23.92 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=24.3
Q ss_pred cccCCCcccCCHHHHHHHHHh---CCceeEEEEE
Q 018119 255 DSFNLPSYFPTPQELKALLKR---NASFSIEKFE 285 (360)
Q Consensus 255 d~f~~P~y~ps~eE~~~~ie~---~g~F~I~~~e 285 (360)
.+|-+|+|..|++|-..+-+- +.+|.|.++.
T Consensus 25 ~sfEVPV~A~SLeeA~e~AE~~Y~~aGf~VtRiR 58 (63)
T PHA00457 25 QSFEVPVYAKSLEEATELAEWQYVPAGFVVTRIR 58 (63)
T ss_pred ceEEeeeecccHHHHHHHHHHhhhccCcEEEEec
Confidence 468899999999998777662 3469998874
No 225
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=26.02 E-value=2.1e+02 Score=26.06 Aligned_cols=75 Identities=12% Similarity=0.038 Sum_probs=42.4
Q ss_pred ceeEEeeecCCCCCccHHHHHHHHHHHHHHhhhcCCCCcc-ceEEecCCCCCchHHHHhhCCCCCcceE-eecCCccccc
Q 018119 57 KVFSIADLGCSVGPNTFNAVQNIIDSVKLKCQSYGHDKLE-FQVFFNDLVSNDFNALYKSLPSDRQYYA-AGVPGSFHNR 134 (360)
Q Consensus 57 ~~~~IaDlGCs~G~Nt~~~~~~ii~~i~~~~~~~~~~~p~-~~v~~nDlp~NDFn~lF~~l~~~~~~f~-~gvpgSFy~r 134 (360)
+..-|++||-|+|..|-.+++.-+ .|+ .+.+ + .+-||-.+.+.+.+..+++- .++.=.=|--
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv-------------~~~~L~~i-E--~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV-------------RPESLTAI-E--YSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC-------------CccceEEE-E--eCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 357899999999998876654333 121 2222 1 12588777777665544221 1111111223
Q ss_pred cCCCCceeEEEec
Q 018119 135 LFPKASINFFHCS 147 (360)
Q Consensus 135 lfP~~S~h~~~Ss 147 (360)
.++..-+|.++|.
T Consensus 112 e~~gq~~D~viS~ 124 (194)
T COG3963 112 EHKGQFFDSVISG 124 (194)
T ss_pred hcCCCeeeeEEec
Confidence 5677788888875
No 226
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=24.93 E-value=1.2e+02 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCC
Q 018119 183 VEAYSAESAKGIESFLLARAQELASGG 209 (360)
Q Consensus 183 ~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 209 (360)
.|.|-+.|++|-...|.+|.+-++..|
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 578999999999999999999887654
No 227
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=24.40 E-value=6.1e+02 Score=27.24 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccC----CCccc-----C
Q 018119 194 IESFLLARAQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFN----LPSYF-----P 264 (360)
Q Consensus 194 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~----~P~y~-----p 264 (360)
|..||+.|... ...|.+.|.|++|..... -+..+-|.+++++|.+++=. ..|. -..|- -
T Consensus 468 frsflq~r~~~-~~~~~~~LffG~R~~~~D----------~lY~~El~~~~~~g~l~~l~-~afSRd~~~k~YVQ~~l~e 535 (600)
T PRK10953 468 FRAFMQQRAAD-GAPGKNWLFFGNPHFTED----------FLYQVEWQRYVKEGLLTRID-LAWSRDQKEKIYVQDKLRE 535 (600)
T ss_pred HHHHHHHHHHc-CCCCCeEEEeeccCCccc----------hhHHHHHHHHHHcCCcceEE-EEECCCCCCCCcHHHHHHH
Confidence 66688888654 445888888888763211 24556688888999875311 1111 01121 1
Q ss_pred CHHHHHHHHHhCCceeEEEEEEeccchhhhcCCChhHHHHHHHHhhhHHHHhhhc--hhHHHHHHHHH
Q 018119 265 TPQELKALLKRNASFSIEKFEPLALSAQRQLATNTPTVVSHLRANLEILVKEHFG--NGIIEDLFDRF 330 (360)
Q Consensus 265 s~eE~~~~ie~~g~F~I~~~e~~~~~~~~~~~~~~~~~~~~iRA~~e~~l~~hfg--~~i~delf~r~ 330 (360)
..+|+.+++++.+.|-| | .++..++.-++..+..++.+|-| ++--++..+++
T Consensus 536 ~~~~l~~~l~~ga~~YV--------C------G~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l 589 (600)
T PRK10953 536 QGAELWRWINDGAHIYV--------C------GDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSEL 589 (600)
T ss_pred HHHHHHHHHHCCcEEEE--------E------CCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 22344444433221111 2 23456777788888888887643 43334444433
No 228
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=24.05 E-value=47 Score=22.79 Aligned_cols=16 Identities=38% Similarity=0.808 Sum_probs=13.6
Q ss_pred CCcccCCHHHHHHHHH
Q 018119 259 LPSYFPTPQELKALLK 274 (360)
Q Consensus 259 ~P~y~ps~eE~~~~ie 274 (360)
+|.+.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6899999999988764
No 229
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=23.79 E-value=95 Score=26.23 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHH
Q 018119 232 SADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALL 273 (360)
Q Consensus 232 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~i 273 (360)
+|+-+-+-++.|+++|.++++..+ +.....+++|+.+.|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 567777888899999999988766 666778888876654
No 230
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=23.58 E-value=2e+02 Score=27.78 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=27.6
Q ss_pred HHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHHhCCceeE
Q 018119 203 QELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLKRNASFSI 281 (360)
Q Consensus 203 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie~~g~F~I 281 (360)
..|.||..|+++-...+.. + +.. ..+.++-.+ -..|.+.+|.+|+.+.+. +|++
T Consensus 178 d~lapGS~L~ish~t~d~~-p----------~~~-~~~~~~~~~----------~~~~~~~Rs~~ei~~~f~---g~el 231 (267)
T PF04672_consen 178 DALAPGSYLAISHATDDGA-P----------ERA-EALEAVYAQ----------AGSPGRPRSREEIAAFFD---GLEL 231 (267)
T ss_dssp CCS-TT-EEEEEEEB-TTS-H----------HHH-HHHHHHHHH----------CCS----B-HHHHHHCCT---TSEE
T ss_pred HhCCCCceEEEEecCCCCC-H----------HHH-HHHHHHHHc----------CCCCceecCHHHHHHHcC---CCcc
Confidence 5899999999998754321 1 111 222222222 245899999999999876 4665
No 231
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=23.23 E-value=67 Score=29.74 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHHHHHH-------HHHhhhcCCC---CccceEEecCCC
Q 018119 36 AIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNIIDSV-------KLKCQSYGHD---KLEFQVFFNDLV 105 (360)
Q Consensus 36 ~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~ii~~i-------~~~~~~~~~~---~p~~~v~~nDlp 105 (360)
..+.+||++... -..+|||.|+|+.|+.+....-..+ +..|...+-+ .-+++|.-.|--
T Consensus 22 avF~~ai~~va~-----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~ 90 (252)
T COG4076 22 AVFTSAIAEVAE-----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDAR 90 (252)
T ss_pred HHHHHHHHHHhh-----------hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccc
Confidence 345677766321 4679999999999998877532211 1123332211 235788888888
Q ss_pred CCch
Q 018119 106 SNDF 109 (360)
Q Consensus 106 ~NDF 109 (360)
.=||
T Consensus 91 ~y~f 94 (252)
T COG4076 91 DYDF 94 (252)
T ss_pred cccc
Confidence 7777
No 232
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=22.85 E-value=1.7e+02 Score=30.58 Aligned_cols=103 Identities=23% Similarity=0.367 Sum_probs=67.7
Q ss_pred ecCC-ccccccCC---CCceeEEEecccccccCCCCccccCCCCCCccCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 018119 126 GVPG-SFHNRLFP---KASINFFHCSYGLQWLSSTPKELNDQNSPAYNKGRIYYSRGPNEVVEAYSAESAKGIESFLLAR 201 (360)
Q Consensus 126 gvpg-SFy~rlfP---~~S~h~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~v~~ay~~Q~~~D~~~FL~~R 201 (360)
.|++ -||++.+| ++.+|++.++..||-+-.- .. +. .| --.++
T Consensus 256 ~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~---~~----------R~-------~v--------------~~s~~ 301 (491)
T KOG2539|consen 256 IVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSK---FS----------RL-------DV--------------PESLW 301 (491)
T ss_pred hccccchhcccCCCCcccceeeEEeeeeeeccCCc---hh----------hh-------hh--------------hHHHH
Confidence 3444 69988887 4569999999999974331 10 11 01 12344
Q ss_pred HHHhccCCeEEEEecCCCCCCCCCCCchhhHHHHHHHHHHHHHHcCCCCHhhh---cccCCCcccCCHHHHHHHHHhCCc
Q 018119 202 AQELASGGLMALIVPCLPDGISPGECSVLASADLLGDCLMDMAKMGLLSEAQV---DSFNLPSYFPTPQELKALLKRNAS 278 (360)
Q Consensus 202 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~---d~f~~P~y~ps~eE~~~~ie~~g~ 278 (360)
-+-.++||.+|+.-.|.+-+ ++++.+|-.-+ +++++. +.+..|...|.+-++.-++..++.
T Consensus 302 r~~~r~g~~lViIe~g~~~g-----------~e~l~eaR~~~-----l~~~~~vd~~~~~~~vlapcPh~l~cPl~~d~~ 365 (491)
T KOG2539|consen 302 RKTDRSGYFLVIIEKGTTMG-----------LELLTEARQNL-----LDQEEEVDYEDVTGPVLAPCPHDLRCPLLRDSA 365 (491)
T ss_pred HhccCCCceEEEEecCCccc-----------hhhHHHHHHhc-----ccchhcCCccccccceecCCCcccCCccccCCC
Confidence 57789999999997654422 47777775422 222222 468889999999999988887643
No 233
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.63 E-value=1.2e+02 Score=28.08 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=32.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceeEEeeecCCCCCccHHHHHHH
Q 018119 19 SYARNSEFQSHGVETAKAIINRVISDKLDLNRVASSSSKVFSIADLGCSVGPNTFNAVQNI 79 (360)
Q Consensus 19 sY~~nS~~Q~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~~~~i 79 (360)
-|.+-+..+.--..++..++| |.+... .+ .+-.+|.|||||.|.=|-.+...+
T Consensus 15 ~Y~~~Ak~~gyRSRAa~KL~e--l~~k~~--i~----~~~~~ViDLGAAPGgWsQva~~~~ 67 (205)
T COG0293 15 PYYKKAKKEGYRSRAAYKLLE--LNEKFK--LF----KPGMVVVDLGAAPGGWSQVAAKKL 67 (205)
T ss_pred HHHHHHhhccccchHHHHHHH--HHHhcC--ee----cCCCEEEEcCCCCCcHHHHHHHHh
Confidence 566666665444444444443 222122 22 457999999999999887665543
No 234
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=21.65 E-value=91 Score=26.68 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018119 179 PNEVVEAYSAESAKGIESFLLARAQE 204 (360)
Q Consensus 179 ~~~v~~ay~~Q~~~D~~~FL~~Ra~E 204 (360)
|..+...|.+||++||-..|+.|..+
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~ 35 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGT 35 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44588999999999999999998643
No 235
>PRK13699 putative methylase; Provisional
Probab=21.29 E-value=2.3e+02 Score=26.32 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhccCCeEEEEe
Q 018119 195 ESFLLARAQELASGGLMALIV 215 (360)
Q Consensus 195 ~~FL~~Ra~EL~pGG~lvl~~ 215 (360)
..+|..-++-|+|||.|++..
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 466777778899999987643
No 236
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=20.99 E-value=2.8e+02 Score=27.15 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=38.1
Q ss_pred CceeEEeeecCCCCCccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCCCc
Q 018119 56 SKVFSIADLGCSVGPNTFNAVQ------------NIIDSVKLKCQSYGHDKLEFQVFFNDLVSND 108 (360)
Q Consensus 56 ~~~~~IaDlGCs~G~Nt~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlp~ND 108 (360)
..+-.|+++|-|+|..|..+++ .++..+.++.+-. ....-+||++.|.-.-|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt-p~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT-PKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC-CccceeeEEecccccCC
Confidence 4578999999999999999998 4566666654421 11245899999887666
No 237
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.94 E-value=1.1e+02 Score=27.23 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCCHhhhcccCCCcccCCHHHHHHHHH
Q 018119 234 DLLGDCLMDMAKMGLLSEAQVDSFNLPSYFPTPQELKALLK 274 (360)
Q Consensus 234 ~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE~~~~ie 274 (360)
+.+..+|.+|+++|++..-+-..-.+-+|-++++|+-..|-
T Consensus 69 ~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmIy 109 (174)
T KOG4068|consen 69 EFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMIY 109 (174)
T ss_pred HHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHHH
Confidence 68889999999999987654445567788899999988774
Done!