BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018120
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 150/314 (47%), Gaps = 17/314 (5%)
Query: 25 ALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTN 84
A++D +AR D S L++ +G + + E + S P +GGS N
Sbjct: 14 AIVDIIARCDDSFLEENGIIKGAXNLINADRAELLYSRX--------GPAVEASGGSAGN 65
Query: 85 TIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCVCLVDAS 143
T G++ G G DDQ G++F +++ GV + PT + V
Sbjct: 66 TAAGVA-SLGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTARSXIFVTED 124
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN----FEVIQAAIRIAKQEGLS 199
G R+ L V++ +++ + V SK +++ + I+ A RIA G
Sbjct: 125 GERSXNTYLGACVELGPEDVEDDVVAQSKVTYFEGYLWDPPRAKDAIREAARIAHAHGRE 184
Query: 200 VSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAKRC 259
+ L+ V +R+ L+L SG VD+ FAN EA L E D + ALE LA+ C
Sbjct: 185 TAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEALALY---ETEDFDRALELLARDC 241
Query: 260 QWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCK 319
+ A VTL G + G E V+V A + +D TGAGDL+A+GFL+G G SLEEC K
Sbjct: 242 KLAAVTLSEEGSVVVRGAERVRVGASVLEQVVDTTGAGDLYAAGFLFGYTSGRSLEECSK 301
Query: 320 VGSCSGGSVIRSLG 333
+G+ + G VI +G
Sbjct: 302 LGNLAAGIVIGQIG 315
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 155/339 (45%), Gaps = 22/339 (6%)
Query: 1 MGAEHLIINREASQAALILGLQPAALIDHVARV-DWSLLDQIPGERGGSIPVAIEELEHI 59
+G E+L L +G A++D ++R D L+D I A L I
Sbjct: 13 LGTENLYFQSXTRFDVLTVG---NAIVDIISRCNDQFLIDN-------QITKAAXNL--I 60
Query: 60 LSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFS 119
+E + P +GGS NT G++ G G DQ G +F +++
Sbjct: 61 DAERAELLYSRXGPALEASGGSAGNTAAGVA-NLGGKAAYFGNVAADQLGDIFTHDIRAQ 119
Query: 120 GVDV-SRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178
GV ++ + PT + V G R+ L V++ +++ A+ V +K
Sbjct: 120 GVHYQTKPKGAFPPTARSXIFVTEDGERSXNTYLGACVELGPEDVEADVVADAKVTYFEG 179
Query: 179 GMFN----FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANED 234
+++ E I RIA Q G S L+ V +R L L SG VD+ FAN
Sbjct: 180 YLWDPPRAKEAILDCARIAHQHGREXSXTLSDSFCVDRYRGEFLDLXRSGKVDIVFANRQ 239
Query: 235 EAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDAT 294
EA L + + D E AL +A C+ A VT NG + G+E V AI + +D T
Sbjct: 240 EALSLYQTD---DFEEALNRIAADCKIAAVTXSENGAVILKGRERYYVNAIRIREVVDTT 296
Query: 295 GAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
GAGDLFASGFLYG +G SLE+C K+G + G VI+ +G
Sbjct: 297 GAGDLFASGFLYGYTQGRSLEDCGKLGCLAAGIVIQQIG 335
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 131/298 (43%), Gaps = 14/298 (4%)
Query: 60 LSEVKTHILDEPS-PIKTIA---GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSN 115
L V +I D S P++ IA GG N +S G L G D GQ + +
Sbjct: 20 LQPVSKNIFDVDSYPLERIAXTTGGDAINEATIIS-RLGHRTALXSRIGKDAAGQFILDH 78
Query: 116 MQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAV-KIQADELIAEDVKGSKW 173
+ +D+ L+ T V LV G RT + ++ K+ D++ +K
Sbjct: 79 CRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKL 138
Query: 174 LVLRFGMFNFEVI--QAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLES-GDVDLCF 230
L L +FN ++ +A I Q + A R L + E+ VD F
Sbjct: 139 LSLA-SIFNSPLLDGKALTEIFTQAKARQXIICADXIKPR-LNETLDDICEALSYVDYLF 196
Query: 231 ANEDEAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKA 290
N EA +L+ G+E D E A FLA + V+ G +GC K G KVPA+ A
Sbjct: 197 PNFAEA-KLLTGKETLD-EIADCFLACGVKTVVIKTGKDGCFIKRGDXTXKVPAVAGITA 254
Query: 291 IDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQM 348
ID GAGD FASGF+ L++G +L EC + + + + S+G +N + + + +
Sbjct: 255 IDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLL 312
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 139/335 (41%), Gaps = 42/335 (12%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVK-THILDE---PSPIKTIAGGS 81
L+D A VD LD+ +++ + IL+E K + DE ++ AGGS
Sbjct: 16 LLDISAVVDKDFLDK----------YSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGS 65
Query: 82 VTNTIRGLSVGFGVP---CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVC 138
N+I+ P G G D+ G++ + VD PTG C
Sbjct: 66 TQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAA 125
Query: 139 LVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLR---------FGMFNFEVIQAA 189
+ NR++ L+ A + ++ + D++ + LV + F + E +
Sbjct: 126 CI-TGDNRSLIANLAAANCYKKEKHL--DLEKNWMLVEKARVCYIAGFFLTVSPESVLKV 182
Query: 190 IRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR--GEENAD 247
A + +++L++ + + ++ L++++ VD+ F NE EAA R G E D
Sbjct: 183 AHHASENNRIFTLNLSAPFISQFYKESLMKVMPY--VDILFGNETEAATFAREQGFETKD 240
Query: 248 -------SEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKA--IDATGAGD 298
++A + +KR + + T G + I E+ + + + ID GAGD
Sbjct: 241 IKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGD 300
Query: 299 LFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
F GFL LV L EC + G + +IR G
Sbjct: 301 AFVGGFLSQLVSDKPLTECIRAGHYAASIIIRRTG 335
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 41/263 (15%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCV 137
GG+ +N+ LS+ G PC +G+ V++ + GVDVS++ + +G T
Sbjct: 40 GGNASNSCTVLSL-LGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSC 98
Query: 138 CLVDAS-GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRI---- 192
C+++ S GNRT+ ++ + A + D+ KW+ + G E ++ RI
Sbjct: 99 CIINNSNGNRTIVLHDTSLPDVSATDFEKVDLTQFKWIHIE-GRNASEQVKMLQRIDAHN 157
Query: 193 ---AKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249
++ + VS++ V R L QL GDV F ++D A L G ++A E
Sbjct: 158 TRQPPEQKIRVSVE------VEKPREELFQLFGYGDV--VFVSKDVAKHL--GFQSA--E 205
Query: 250 AALEFLAKR--------CQWA---VVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGD 298
AL L R C WA LGP+G +++ A + +D GAGD
Sbjct: 206 EALRGLYGRVRKGAVLVCAWAEEGADALGPDG-------KLLHSDAFPPPRVVDTLGAGD 258
Query: 299 LFASGFLYGLVKGLSLEECCKVG 321
F + ++ L +G S++E + G
Sbjct: 259 TFNASVIFSLSQGRSVQEALRFG 281
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 41/263 (15%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCV 137
GG+ +N+ LS+ G PC +G+ V++ + GVDVS++ + +G T
Sbjct: 55 GGNASNSCTVLSL-LGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSC 113
Query: 138 CLVDAS-GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRI---- 192
C+++ S GNRT+ ++ + A + D+ KW+ + G E ++ RI
Sbjct: 114 CIINNSNGNRTIVLHDTSLPDVSATDFEKVDLTQFKWIHIE-GRNASEQVKMLQRIDAHN 172
Query: 193 ---AKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249
++ + VS++ V R L QL GDV F ++D A L G ++A E
Sbjct: 173 TRQPPEQKIRVSVE------VEKPREELFQLFGYGDV--VFVSKDVAKHL--GFQSA--E 220
Query: 250 AALEFLAKR--------CQWA---VVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGD 298
AL L R C WA LGP+G +++ A + +D GAGD
Sbjct: 221 EALRGLYGRVRKGAVLVCAWAEEGADALGPDG-------KLLHSDAFPPPRVVDTLGAGD 273
Query: 299 LFASGFLYGLVKGLSLEECCKVG 321
F + ++ L +G S++E + G
Sbjct: 274 TFNASVIFSLSQGRSVQEALRFG 296
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 140/351 (39%), Gaps = 62/351 (17%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 22 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNP-TSLPGGSALNS 74
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLINEK 134
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSV--- 200
RT+ L + I ED W G F + + L V
Sbjct: 135 -ERTLCTHLGACGSFR----IPED-----WTTFASGALIFYATAYTLTATPKNALEVAGY 184
Query: 201 ---------SMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL------VRGEEN 245
+++L++ V ++ + LL ++ F NE+E A L V ++
Sbjct: 185 AHGIPNAIFTLNLSAPFCVELYKDAMQSLLL--HTNILFGNEEEFAHLAKVHNLVAADKT 242
Query: 246 ADSEAALEFLAKRCQWA----------------VVTLGPNGCIAKH-------GKEIVKV 282
A S A E + C A V+T G N IA V V
Sbjct: 243 ALSTANKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGV 302
Query: 283 PAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
P + K +D GAGD F GFLYGL +G ++++C G+ VI+ +G
Sbjct: 303 PVVAAEKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 149/331 (45%), Gaps = 34/331 (10%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
L+D A V+ LL++ + +I +A E+ + E L E + IAGGSV N+
Sbjct: 33 LLDISAVVEKDLLNKYDMQPNNAI-LAEEKHMPMYQE-----LIEKYQAEYIAGGSVQNS 86
Query: 86 IRGLSVGFGVPCGLI--GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R P I G G D+ ++ +GV+V R PTG C LV +
Sbjct: 87 LRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVLVTGT 146
Query: 144 GNRTMRPCLSNAVKIQADELIAED----VKGSKWLVLRFGMFNFEVIQAAIRIAKQ---E 196
R++ L+ A + L ++ ++G+++ + G F ++A+ +AK+
Sbjct: 147 -QRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVS-GFFFTVSFESALSVAKEAAAT 204
Query: 197 GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEF-- 254
G M+L++ + + ++ L ++ VD+ F NE EA L + E N +E E
Sbjct: 205 GRMFMMNLSAPFVPQFYKNNLEEIFPY--VDVLFGNETEAIALAK-EFNYGTEDLREIGK 261
Query: 255 --------LAKRCQWAVVTLGPNGCI-AKHGKEIVK---VPAIGEAKAIDATGAGDLFAS 302
KR + ++T G + + + G + V+ V + + +D GAGD F
Sbjct: 262 RIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFVG 321
Query: 303 GFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
GFL L++ +++ C K G + +I+ G
Sbjct: 322 GFLAQLLQSRTVDVCIKCGIWAAREIIQRSG 352
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 138/351 (39%), Gaps = 62/351 (17%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 22 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNP-TSLPGGSALNS 74
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLINEK 134
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSV--- 200
RT+ L + E W G F + + L V
Sbjct: 135 -ERTLCTHLGACGSFRIPE---------NWTTFASGALIFYATAYTLTATPKNALEVAGY 184
Query: 201 ---------SMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL------VRGEEN 245
+++L++ V ++ + LL ++ F NE+E A L V E+
Sbjct: 185 AHGIPNAIFTLNLSAPFCVELYKDAMQSLLL--HTNILFGNEEEFAHLAKVHNLVAAEKV 242
Query: 246 ADSEAALEFLAKRCQWA----------------VVTLGPNGCIAKH-------GKEIVKV 282
A S A E + C A V+T G N IA V V
Sbjct: 243 ALSVANKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGV 302
Query: 283 PAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
P + K +D GAGD F GFLYGL +G ++++C G+ VI+ +G
Sbjct: 303 PVVAAEKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 147/349 (42%), Gaps = 44/349 (12%)
Query: 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILD--E 70
+ A L + +Q L+D A V L + ERG +I +LSE + I D E
Sbjct: 4 ASAPLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAI---------LLSERQKGIFDDIE 54
Query: 71 PSP-IKTIAGGSVTNTIR---GLSVGF-GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSR 125
P ++ + GGS N R + + G +G DD+ G++ + G+ ++
Sbjct: 55 KMPNVRYVPGGSGLNVARVAQWMQQAYKGKFVTYVGCIADDRYGKVLKEAAEHEGIVMAV 114
Query: 126 LRMKRGPTGQC-VCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS--KWLVLRFGMFN 182
+ +G C VC+ RT+ L A + ++ + + V + + + F F
Sbjct: 115 EHTTKAGSGACAVCIT--GKERTLVADLGAANHLSSEHMRSPAVVRAMDESRIFYFSGFT 172
Query: 183 F-----EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237
V+QA + + +GL + ++L++ +++ F L ++L D+ AN EA
Sbjct: 173 LTVDVNHVLQACRKAREVDGLFM-INLSAPFIMQFFSAQLGEVLPY--TDIIVANRHEAK 229
Query: 238 ELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCI-------------AKHGKEIVKVPA 284
E D++ +E +A+R V G G + K G E V VP
Sbjct: 230 EFA-NMMKWDTDC-VEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPVPQ 287
Query: 285 IGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
+ + K ID GAGD F GFL G L CC+ G + VI+ G
Sbjct: 288 LDQDKVIDMNGAGDAFMGGFLSAYAVGKDLRRCCETGHYTAQEVIQRDG 336
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 113/293 (38%), Gaps = 54/293 (18%)
Query: 69 DEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128
+E GGS N + G S G+ G IG DDQ G+ S + GVD S L
Sbjct: 34 EETXTFSKYVGGSPANIVIG-SSKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNL-- 90
Query: 129 KRGPTGQCVCLVDASGNRT-----------------MRPCLSNAVKIQADELIAEDVKGS 171
+VD G++T R +++ + + +E+ ++ S
Sbjct: 91 ----------VVDQEGHKTGLAFTEIKSPEECSILXYRQDVAD-LYLSPEEVNEAYIRRS 139
Query: 172 KWLVLRFGMFN----FEVIQAAIRIAKQEGLSV--SMDLASFEMVRNFRTPLLQLLESGD 225
K L++ + E + AIR+AK+ + V +D + T + L +
Sbjct: 140 KLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQ 199
Query: 226 VDLCFANEDEAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE-IVKVPA 284
D+ +E L E D++ + +L K P + KHG E
Sbjct: 200 SDIVIGTREEFDVLENRTEKGDNDETIRYLFKHS--------PELIVIKHGVEGSFAYTK 251
Query: 285 IGEA--------KAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVI 329
GEA K + GAGD +AS FLY L+ G +E K GS S V+
Sbjct: 252 AGEAYRGYAYKTKVLKTFGAGDSYASAFLYALISGKGIETALKYGSASASIVV 304
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 137/351 (39%), Gaps = 62/351 (17%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 42 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNP-TSLPGGSALNS 94
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 95 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLINEK 154
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSV--- 200
RT+ L + E W G F + + L V
Sbjct: 155 -ERTLCTHLGACGSFRLPE---------DWTTFASGALIFYATAYTLTATPKNALEVAGY 204
Query: 201 ---------SMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL------VRGEEN 245
+++L++ V ++ + LL ++ F NE+E A L V E+
Sbjct: 205 AHGIPNAIFTLNLSAPFCVELYKDAMQSLLL--HTNILFGNEEEFAHLAKVHNLVAAEKT 262
Query: 246 ADSEAALEFLAKRCQWA----------------VVTLGPNGCIAKH-------GKEIVKV 282
A S A E + C A V+T G N IA V V
Sbjct: 263 ALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGV 322
Query: 283 PAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
P + K +D GAGD F GFLY L +G ++++C G+ VI+ +G
Sbjct: 323 PVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG 373
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 136/351 (38%), Gaps = 62/351 (17%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 22 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNP-TSLPGGSALNS 74
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLINEK 134
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSV--- 200
RT+ L + E W G F + + V
Sbjct: 135 -ERTLCTHLGACGSFRLPE---------DWTTFASGALIFYATAYTLTATPKNAFEVAGY 184
Query: 201 ---------SMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE------LVRGEEN 245
+++L++ V ++ + LL ++ F NE+E A LV E+
Sbjct: 185 AHGIPNAIFTLNLSAPFCVELYKDAMQSLLL--HTNILFGNEEEFAHLAKVHNLVAAEKT 242
Query: 246 ADSEAALEFLAKRCQWA----------------VVTLGPNGCIAKH-------GKEIVKV 282
A S A E + C A V+T G N IA V V
Sbjct: 243 ALSTANKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGV 302
Query: 283 PAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
P + K +D GAGD F GFLY L +G ++++C G+ VI+ +G
Sbjct: 303 PVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 254 FLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLS 313
+L + ++TLG G IA G+EI+++PA E A+D TGAGD F SGF+ GL+ G +
Sbjct: 232 YLELGVKAVILTLGEEGVIASDGEEIIRIPAFSE-DAVDVTGAGDAFWSGFICGLLDGYT 290
Query: 314 LEECCKVGSCSGGSVIRSLG 333
++ K+G+ IR +G
Sbjct: 291 VKRSIKLGNGVAAFKIRGVG 310
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPT 133
++ GG+ N L+ GV G +G G+D+ G + ++ GVD++ R G T
Sbjct: 28 LEVYVGGAEVNVAVALAR-LGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAPGFT 86
Query: 134 GQCV--CLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQA--- 188
G + L G S + + ++G ++L L G+ +A
Sbjct: 87 GLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLS-GITPALSPEARAF 145
Query: 189 ---AIRIAKQEGLSVSMDLASFEMVRNFRTPLLQ------LLESG--DVDLCFANEDEAA 237
A+ AK+ G+ VS+D+ N+R L LE VDL F +E+EA
Sbjct: 146 SLWAMEEAKRRGVRVSLDV-------NYRQTLWSPEEARGFLERALPGVDLLFLSEEEAE 198
Query: 238 ELV-RGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGA 296
L R EE + +A E + KR G G A V+ A +A+D GA
Sbjct: 199 LLFGRVEEALRALSAPEVVLKR--------GAKGAWAFVDGRRVEGSAFA-VEAVDPVGA 249
Query: 297 GDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
GD FA+G+L G V GL +EE ++ + G SV S G
Sbjct: 250 GDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRG 286
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 42/289 (14%)
Query: 75 KTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTG 134
+ GG+ NT G+ GV L+ G D + + ++ +++S+L
Sbjct: 38 RKYYGGAAANTAVGIK-KLGVNSELLSCVGYDFKNSGYERYLKNLDINISKLYYSEEEET 96
Query: 135 QCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAA----- 189
+ N + L A K + L FN E++ A
Sbjct: 97 PKAWIFTDKDNNQITFFLWGAAK--------------HYKELNPPNFNTEIVHIATGDPE 142
Query: 190 --IRIAKQEGLSVSMDLASFE----MVRNFRTPLLQLLESGDVDLCFANEDE---AAELV 240
++ AK+ + +L SF+ + + + LL+++E + F N+ E A+ L+
Sbjct: 143 FNLKCAKK---AYGNNLVSFDPGQDLPQYSKEMLLEIIEH--TNFLFMNKHEFERASNLL 197
Query: 241 RGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLF 300
E ++ +R +VT G G + + +++P I K ID TGAGD +
Sbjct: 198 NFE--------IDDYLERVDALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSY 249
Query: 301 ASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQ 349
+GFL VKG LE+C +G+ + V+ + G + W + ++++
Sbjct: 250 RAGFLSAYVKGYDLEKCGLIGAATASFVVEAKGCQTNLPTWDKVVERLE 298
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 31/279 (11%)
Query: 86 IRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQC-VCLVDASG 144
+ G+ FG+ +G G D +L+ + ++ ++ L T +C V L D +
Sbjct: 45 VSGVLSKFGIKNEALGIAGSDNLDKLY-AILKEKHINHDFLVEAGTSTRECFVVLSDDTN 103
Query: 145 NRTMRP----CLSNAVKIQADELIAEDVKGSKWLVL------RFGMFNFEVIQAAIRIAK 194
TM P +S K + IA+ VK +V+ + + +F+ + +R K
Sbjct: 104 GSTMIPEAGFTVSQTNKDNLLKQIAKKVKKEDMVVIAGSPPPHYTLSDFKEL---LRTVK 160
Query: 195 QEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEF 254
G + D + L L VD NEDE ++ + N+ E +
Sbjct: 161 ATGAFLGCDNSG---------EYLNLAVEMGVDFIKPNEDEVIAILDEKTNS-LEENIRT 210
Query: 255 LAKRCQWAVVTLGPNGCIAKHGKEIVKV--PAIGEAKAIDATGAGDLFASGFLYGLVKGL 312
LA++ + VV+LG G I H ++ +V P + E + TGAGD+F F+ GL +
Sbjct: 211 LAEKIPYLVVSLGAKGSICAHNGKLYQVIPPKVQER---NDTGAGDVFVGAFIAGLAMNM 267
Query: 313 SLEECCKVGS-CSGGSVIRSLGGEVTPENWQWMRKQMQI 350
+ E KV + CS +V++ E ++ Q+ I
Sbjct: 268 PITETLKVATGCSASAVMQQDSSSFDLEAAGKLKNQVSI 306
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 66 HILDE---PSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGA-------YGDDQQGQLFVSN 115
HIL+ P+P +T+ G G V G GA GDD G+
Sbjct: 17 HILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQ 76
Query: 116 MQFSGVDVSRLRMKRGPT-----------GQCVCLVDASGNRTMRPCLSNAVKIQADELI 164
+ +D++ + + +G + G+ V + A N + P L A +
Sbjct: 77 LATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQR------- 129
Query: 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESG 224
E + + L+++ E + AA +IA Q V+++ A R LL L
Sbjct: 130 -ERIANASALLMQL-ESPLESVMAAAKIAHQNKTIVALNPAP---ARELPDELLAL---- 180
Query: 225 DVDLCFANEDEAAEL--VRGEENADSEAALEFLAKR-CQWAVVTLGPNGCIAKHGKEIVK 281
VD+ NE EA +L +R E + D+ A + L ++ + ++TLG G A E +
Sbjct: 181 -VDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQR 239
Query: 282 VPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEE 316
VP +A+D AGD F + L++ L E
Sbjct: 240 VPGF-RVQAVDTIAAGDTFNGALITALLEEKPLPE 273
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 45/265 (16%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQ--- 135
GG+ +N+ LS+ G PC +G+ + +++ VD+ + TG
Sbjct: 40 GGNASNSCTVLSL-LGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQ--TTGSVPI 96
Query: 136 -CVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRI-- 192
V + +ASG+RT+ + + A + D+ KW+ + G E ++ RI
Sbjct: 97 ATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIE-GRNASEQVKMLQRIDA 155
Query: 193 -----AKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENAD 247
++ + VS++ V R L QL GDV F ++D A L G ++A
Sbjct: 156 HNTRQPPEQKIRVSVE------VEKPREELFQLFGYGDV--VFVSKDVAKHL--GFQSA- 204
Query: 248 SEAALEFLAKR--------CQWA---VVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGA 296
E AL L R C WA LGP+G +++ A + +D GA
Sbjct: 205 -EEALRGLYGRVRKGAVLVCAWAEEGADALGPDG-------KLLHSDAFPPPRVVDTLGA 256
Query: 297 GDLFASGFLYGLVKGLSLEECCKVG 321
GD F + ++ L +G S++E + G
Sbjct: 257 GDTFNASVIFSLSQGRSVQEALRFG 281
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 112/265 (42%), Gaps = 45/265 (16%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQ--- 135
GG+ +N+ LS+ G PC G+ + +++ VD+ + TG
Sbjct: 54 GGNASNSCTILSL-LGAPCAFXGSXAPGHVADFVLDDLRRYSVDLRYTVFQ--TTGSVPI 110
Query: 136 -CVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRI-- 192
V + +ASG+RT+ + + A + D+ KW+ + G E ++ RI
Sbjct: 111 ATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIE-GRNASEQVKXLQRIDA 169
Query: 193 -----AKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENAD 247
++ + VS++ V R L QL GDV F ++D A L G ++A
Sbjct: 170 HNTRQPPEQKIRVSVE------VEKPREELFQLFGYGDV--VFVSKDVAKHL--GFQSA- 218
Query: 248 SEAALEFLAKR--------CQWA---VVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGA 296
E AL L R C WA LGP+G +++ A + +D GA
Sbjct: 219 -EEALRGLYGRVRKGAVLVCAWAEEGADALGPDG-------KLLHSDAFPPPRVVDTLGA 270
Query: 297 GDLFASGFLYGLVKGLSLEECCKVG 321
GD F + ++ L +G S++E + G
Sbjct: 271 GDTFNASVIFSLSQGRSVQEALRFG 295
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 226 VDLCFANEDEAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKV--P 283
VD NEDE ++ + N+ E + LA++ + VV+LG G I H ++ +V P
Sbjct: 183 VDFIKPNEDEVIAILDEKTNS-LEENIRTLAEKIPYLVVSLGAKGSICAHNGKLYQVIPP 241
Query: 284 AIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGS-CSGGSVIRSLGGEVTPENWQ 342
+ E + TGAGD+F F+ GL + E KV + CS V + E
Sbjct: 242 KVQER---NDTGAGDVFVGAFIAGLAXNXPITETLKVATGCSASKVXQQDSSSFDLEAAG 298
Query: 343 WMRKQMQI 350
++ Q+ I
Sbjct: 299 KLKNQVSI 306
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 255 LAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSL 314
+A R Q ++T G +G +H ++PA+ + ID TG GD F G LYG+ G
Sbjct: 218 IASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDW 277
Query: 315 EECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQIR 351
++ S G I G P+ + R ++ R
Sbjct: 278 ATAGRLASLMGALKIAHQG----PQTYAPTRAEIDAR 310
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 255 LAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSL 314
+A R Q ++T G +G +H ++PA+ + ID TG GD F G LYG+ G
Sbjct: 210 IASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDW 269
Query: 315 EECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQIR 351
++ S G I G P+ + R ++ R
Sbjct: 270 ATAGRLASLMGALKIAHQG----PQTYAPTRAEIDAR 302
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 26/233 (11%)
Query: 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL-VDASGNRTMRPC 151
G CG IG GDD G+ Q +GVDV+ LR+ T + + + A G R+
Sbjct: 63 LGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERS---- 118
Query: 152 LSNAVKIQADELIA-EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQ---EGLSVSMDLASF 207
+ V AD ++ +D+ + ++ F F I R A++ EG + +
Sbjct: 119 FTYLVHPGADTYVSPQDLPPFR----QYEWFYFSSIGLTDRPAREACLEGARRXREAGGY 174
Query: 208 EMVR-NFRT---------PLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAK 257
+ N R+ P L + +C + DE +L D+ L L
Sbjct: 175 VLFDVNLRSKXWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARYYLRDLG- 233
Query: 258 RCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVK 310
C +++LG +G + + PA +D TGAGD F G L+ L +
Sbjct: 234 -CDTTIISLGADGALLITAEGEFHFPA-PRVDVVDTTGAGDAFVGGLLFTLSR 284
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 26/233 (11%)
Query: 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL-VDASGNRTMRPC 151
G CG IG GDD G+ Q +GVDV+ LR+ T + + + A G R+
Sbjct: 63 LGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERS---- 118
Query: 152 LSNAVKIQADELIA-EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQ---EGLSVSMDLASF 207
+ V AD ++ +D+ + ++ F F I R A++ EG + +
Sbjct: 119 FTYLVHPGADTYVSPQDLPPFR----QYEWFYFSSIGLTDRPAREACLEGARRMREAGGY 174
Query: 208 EMVR-NFRT---------PLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAK 257
+ N R+ P L + +C + DE +L D+ L L
Sbjct: 175 VLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARYYLRDLG- 233
Query: 258 RCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVK 310
C +++LG +G + + PA +D TGAGD F G L+ L +
Sbjct: 234 -CDTTIISLGADGALLITAEGEFHFPA-PRVDVVDTTGAGDAFVGGLLFTLSR 284
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 263 VVTLGPNGC-IAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVG 321
V TLGP G + + + V + E D TG GD F +GFL G GL LE ++G
Sbjct: 231 VTTLGPKGVDLVEPDGTTIHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSAQLG 290
Query: 322 SCSGGSVIRSLGGEVTPENWQW 343
S V+ S G + WQW
Sbjct: 291 SLVAVLVLESTG----TQEWQW 308
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 29/230 (12%)
Query: 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR-MKRGPTGQCVCLVDASGNRTMRPC 151
GVPCG+I G+D G + + + GVD+ + + TG SG+R
Sbjct: 50 LGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFN 109
Query: 152 LSNAV--KIQA---DELIAEDVKGSKWLVLRFGMFNFEVIQA---AIRIAKQEGLSVSMD 203
+ NA K+ A DE I +D + + + +F+F + A A+ I K G +S D
Sbjct: 110 IKNAACGKLSAQHVDENILKDC--THFHIXGSSLFSFHXVDAVKKAVTIVKANGGVISFD 167
Query: 204 LASFEMVRNFRTPLLQLLESGD--------VDLCFANEDEAAELVRGEENADSEAALEFL 255
N R L + E D D+ +E E L+ + A FL
Sbjct: 168 -------PNIRKEXLDIPEXRDALHFVLELTDIYXPSEGEV--LLLSPHSTPERAIAGFL 218
Query: 256 AKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFL 305
+ + +V G G E V + + +D TGAGD F ++
Sbjct: 219 EEGVKEVIVKRGNQGASYYSANEQFHVESY-PVEEVDPTGAGDCFGGAWI 267
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 25/239 (10%)
Query: 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTG----QCVCLVDASGNRTM 148
G CG+I GDD+ G + ++ GVDVS +++ PTG Q V
Sbjct: 47 GNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIY 106
Query: 149 RPCLSNAVKIQADELIAEDVKG-----SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD 203
S K+ +++ E VK S + L E + A IA ++
Sbjct: 107 YRKGSAGSKLSPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYKAFEIASNRSFDTNIR 166
Query: 204 LASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAKRCQWAV 263
L + + +L+LL + + D+ ++++ GE +D + A + + + V
Sbjct: 167 LKLWS-AEEAKREILKLLSKFHLKFLITDTDD-SKIILGE--SDPDKAAKAFSDYAEIIV 222
Query: 264 VTLGPNGCIAKH-GKEI----VKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEEC 317
+ LGP G I + GK+ +VP D TGAGD FL KG +E+
Sbjct: 223 MKLGPKGAIVYYDGKKYYSSGYQVP------VEDVTGAGDALGGTFLSLYYKGFEMEKA 275
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 224 GDVDLCFANEDEA-------AELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHG 276
GD+D+ F NE EA AE VR N +A L VVT G + +A +G
Sbjct: 181 GDIDILFMNEAEARALTGETAENVRDWPNILRKAGL-------SGGVVTRGASEVVAFNG 233
Query: 277 KE--IVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVG 321
E I+ P I E K D TGAGD ASG+L + +G ++ E + G
Sbjct: 234 TEKAILHPPLIREVK--DVTGAGDAMASGYLAAIAEGKTIREALRQG 278
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 47/261 (18%)
Query: 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRL-RMKRGPTGQCVCLVDASG----------NRT 147
I G D + + + + +D S + + TGQ V+A G N T
Sbjct: 59 FITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMT 118
Query: 148 MRPCLSNAVKIQADELIAEDVKGSKWLVLR--FGMFNFEV----IQAAIRIAKQEGLSVS 201
M P EDV +K ++ F + EV I +A IAK G++
Sbjct: 119 MTP---------------EDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTV 163
Query: 202 MDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG----EENADSEAALEFLAK 257
++ A + + N LL L +D+ NE EA EL+ G E + + A FL+
Sbjct: 164 LNPAPAKALPN---ELLSL-----IDIIVPNETEA-ELLSGIKVTNEQSMKDNANYFLSI 214
Query: 258 RCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL-SLEE 316
+ ++TLG G + + A + AID T AGD F F+ L K +L +
Sbjct: 215 GIKTVLITLGKQGTYFATKNQSQHIEAY-KVNAIDTTAAGDTFIGAFVSRLNKSQDNLAD 273
Query: 317 CCKVGSCSGGSVIRSLGGEVT 337
G+ + ++ G + +
Sbjct: 274 AIDFGNKASSLTVQKHGAQAS 294
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 219 QLLESGDVDLCFANEDEA---AELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCI--A 273
Q DV C NE EA L G EAAL L + CQ ++TLG GC+ +
Sbjct: 197 QFYTLSDVFCC--NESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLS 254
Query: 274 KHGKEIVKVPAIGEAKAIDATGAGDLF--ASGFLYGLVKGLSLEE 316
+ E +P + KA+D TGAGD F A F LSLE+
Sbjct: 255 QTEPEPKHIPT-EKVKAVDTTGAGDSFVGALAFYLAYYPNLSLED 298
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 20/243 (8%)
Query: 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASG-NRTMRPCLSNA 155
C + G+D L + N + G+ +R+ PTG+ VD +G NR + +NA
Sbjct: 69 CRFVTCIGNDDYSDLLIENYEKLGI-TGYIRVSL-PTGRAFIEVDKTGQNRIIIFPGANA 126
Query: 156 VKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRT 215
+++ + + + S L+L+ N + + AK+ V D A +
Sbjct: 127 -ELKKELIDWNTLSESDILLLQ----NEIPFETTLECAKRFNGIVIFDPAP---AQGINE 178
Query: 216 PLLQLLESGDVDLCFANEDEAAELVR---GEENADSEAALEFLAKRCQWAVVTLGPNGCI 272
+ Q L D NE E L + GE +AA +FL + +V LG G +
Sbjct: 179 EIFQYL-----DYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVL 233
Query: 273 AKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSL 332
+ E P + KA+D T AGD+F F L +G + EE G+ + + L
Sbjct: 234 LVNKNEKKHFPTF-KVKAVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAAAISVTRL 292
Query: 333 GGE 335
G +
Sbjct: 293 GAQ 295
>pdb|2AWD|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2AWD|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2F02|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
pdb|2F02|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
Length = 323
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 259 CQWAVVTLGPNGCIAKHGKEI--VKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEE 316
+W V++LG +G IAKH + VK+P I +A + G+GD +G YGL K E
Sbjct: 219 IEWIVISLGKDGAIAKHHDQFYRVKIPTI---QAKNPVGSGDATIAGLAYGLAKDAPAAE 275
Query: 317 CCK 319
K
Sbjct: 276 LLK 278
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 263 VVTLGPNGCIAK-HGKEIVKVPAIG--EAKAIDATGAGDLFASGFLYGLVKGLSLEECCK 319
VV G + C+ G+ +V VPA+ + K ID T AGD F++G+L + G S E K
Sbjct: 228 VVKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAENAAK 287
Query: 320 VGSCSGGSVIRSLGGEVTPE 339
G + +VI+ G + E
Sbjct: 288 RGHLTASTVIQYRGAIIPRE 307
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 42/275 (15%)
Query: 68 LDEPSPIKTIAGGSVTNTIRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVD-VS 124
+ + + IAGG+ NT++ + P C +G G D QG+ ++ N S +D V+
Sbjct: 72 IQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSYVGCIGADIQGK-YIKN-DCSALDLVT 129
Query: 125 RLRMKRGP--TGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV-----KGSKWLVLR 177
++ P TG+ LV + R+M L A + + V K + +
Sbjct: 130 EFQIAEEPLMTGKVAVLV-SEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAG 188
Query: 178 FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVD-------LCF 230
F + + ++IAK + + N P L + +VD + F
Sbjct: 189 FVINT--CYEGMLKIAKHSLENEKL------FCFNLSAPFLSQFNTKEVDEMISYSNIVF 240
Query: 231 ANEDEAAEL--VRGEENADSEAALEFLA--------KRCQWAVVTLGPNGCIAKHGKEI- 279
NE EA V G A ++A KR + ++T G N + +
Sbjct: 241 GNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSE 300
Query: 280 ---VKVPAIGEAKAIDATGAGDLFASGFLYGLVKG 311
V + + ID GAGD FA+GF+ ++G
Sbjct: 301 IHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRG 335
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 42/275 (15%)
Query: 68 LDEPSPIKTIAGGSVTNTIRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVD-VS 124
+ + + IAGG+ NT++ + P C +G G D QG+ ++ N S +D V+
Sbjct: 72 IQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSYVGCIGADIQGK-YIKN-DCSALDLVT 129
Query: 125 RLRMKRGP--TGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV-----KGSKWLVLR 177
++ P TG+ LV + R+M L A + + V K + +
Sbjct: 130 EFQIAEEPLMTGKVAVLV-SEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAG 188
Query: 178 FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVD-------LCF 230
F + + ++IAK + + N P L + +VD + F
Sbjct: 189 FVINT--CYEGMLKIAKHSLENEKL------FCFNLSAPFLSQFNTKEVDEMISYSNIVF 240
Query: 231 ANEDEAAEL--VRGEENADSEAALEFLA--------KRCQWAVVTLGPNGCIAKHGKEI- 279
NE EA V G A ++A KR + ++T G N + +
Sbjct: 241 GNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSE 300
Query: 280 ---VKVPAIGEAKAIDATGAGDLFASGFLYGLVKG 311
V + + ID GAGD FA+GF+ ++G
Sbjct: 301 IHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRG 335
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 42/275 (15%)
Query: 68 LDEPSPIKTIAGGSVTNTIRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVD-VS 124
+ + + IAGG+ NT++ + P C +G G D QG+ ++ N S +D V+
Sbjct: 70 IQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSYVGCIGADIQGK-YIKN-DCSALDLVT 127
Query: 125 RLRMKRGP--TGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV-----KGSKWLVLR 177
++ P TG+ LV + R+M L A + + V K + +
Sbjct: 128 EFQIAEEPLMTGKVAVLV-SEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAG 186
Query: 178 FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVD-------LCF 230
F + + ++IAK + + N P L + +VD + F
Sbjct: 187 FVINT--CYEGMLKIAKHSLENEKL------FCFNLSAPFLSQFNTKEVDEMISYSNIVF 238
Query: 231 ANEDEAAEL--VRGEENADSEAALEFLA--------KRCQWAVVTLGPNGCIAKHGKEI- 279
NE EA V G A ++A KR + ++T G N + +
Sbjct: 239 GNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSE 298
Query: 280 ---VKVPAIGEAKAIDATGAGDLFASGFLYGLVKG 311
V + + ID GAGD FA+GF+ ++G
Sbjct: 299 IHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRG 333
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 96/263 (36%), Gaps = 24/263 (9%)
Query: 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGP-TGQCVCLVDASGNRTMRPCLSNAVK 157
L GA GDD+ G + ++ SG+D S + G + ++D G R + P + +
Sbjct: 85 LWGAVGDDETGTRILRDLSESGIDTSGXTVAPGARSALSTIIIDNRGERLIVPFYDHRLH 144
Query: 158 IQADELIAEDVK--GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRT 215
+ ED+ + + +R+ +V+ A + K L D+A E
Sbjct: 145 EKKRACTPEDIALFDAVLVDVRWPELALDVLTVARALGKPAIL--DGDVAPVET------ 196
Query: 216 PLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKH 275
L+ L + F+ + AA + G E + + VT GP GC
Sbjct: 197 --LEGLAPAATHIVFS--EPAATRLTGLETVKDXLPVLHARYPQTFIAVTAGPAGCWWTE 252
Query: 276 GKE-IVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLGG 334
+ V + +A+D AGD+F F +G ++ S + GG
Sbjct: 253 ADDPTVHFQTTXQVEAVDTLAAGDIFHGTFALAXAEGXQSRAAVRLSSVAAALKCTVFGG 312
Query: 335 --------EVTPENWQWMRKQMQ 349
E QW+ ++ +
Sbjct: 313 RIGAPTREETEEAXRQWLERESE 335
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 101/263 (38%), Gaps = 34/263 (12%)
Query: 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR-----------MKRGP----TGQCVCLVD 141
C LI G+D+ G+ + + G+D S ++ ++RG + V
Sbjct: 50 CSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRK 109
Query: 142 ASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVS 201
S + P N ++ L+ S + L E + A +AK L +
Sbjct: 110 GSAGSRLSPEDINENYVRNSRLVH-----STGITLAISDNAKEAVIKAFELAKSRSLDTN 164
Query: 202 MDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAKRCQW 261
+ + + + +L +L+ D+++ + D+ L+ + EA ++ +
Sbjct: 165 IRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILL--DVTDPDEAYRKYKELGVKV 222
Query: 262 AVVTLGPNGCIA-----KHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEE 316
+ LG G IA K K+ KVP D TGAGD A F+ ++G +E
Sbjct: 223 LLYKLGSKGAIAYKDNVKAFKDAYKVPVE------DPTGAGDAMAGTFVSLYLQGKDIEY 276
Query: 317 CCKVGSCSGGSVIRSLG-GEVTP 338
G + VI G E+TP
Sbjct: 277 SLAHGIAASTLVITVRGDNELTP 299
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 235 EAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDAT 294
E E+ GE + A L + + A+V GP G A E V+VP I+
Sbjct: 204 EECEIAVGETEPE-RAGRALLERGVELAIVKQGPKGVXAXTKDETVEVPPFF-VDVINGL 261
Query: 295 GAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSL 332
GAGD F +GL+ LE+ + + +G V L
Sbjct: 262 GAGDAFGGALCHGLLSEWPLEKVLRFANTAGALVASRL 299
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 31/243 (12%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL-RMKRGPTGQC- 136
GG+ N G+S GV LI G+D G+ + + VD + + ++ TG
Sbjct: 33 GGAPANVAVGVS-RLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVF 91
Query: 137 VCLVDASGNRTMRPCLS--NAVKIQADELIAEDVKGSKWLVLRFGMF------NFEVIQA 188
V L AS + + ++ N + I E+ K ++ FG + E +
Sbjct: 92 VQLKGASPSFLLYDDVAYFNXTLNDINWDIVEEAK-----IVNFGSVILARNPSRETVXK 146
Query: 189 AIRIAKQEGLSVSMDLA-SFEMVRNFRTPLLQLLESGD--VDLCFANEDEAAELVRGEEN 245
I+ K L ++ D+ ++ R +++LE D+ A+E+E L EN
Sbjct: 147 VIKKIKGSSL-IAFDVNLRLDLWRGQEEEXIKVLEESIKLADIVKASEEEVLYL----EN 201
Query: 246 ADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFL 305
E K +TLGP GC + +V VP+ +D TGAGD F + L
Sbjct: 202 QGVEV------KGSXLTAITLGPKGCRLIKNETVVDVPSYN-VNPLDTTGAGDAFXAALL 254
Query: 306 YGL 308
G+
Sbjct: 255 VGI 257
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 224 GDVDLCFANEDEAAELVRGEENADSE---AALEFL-AKRCQWAVVTLGPNGCIAKHGKEI 279
G+++L N+ E + LV E + AA E + + + + VV+LGP G + +
Sbjct: 179 GNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENC 238
Query: 280 VKV--PAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
++V P + K+ GAGD L + SLEE + G +G + + G
Sbjct: 239 IQVVPPPV---KSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQG 291
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 221 LESGDVDLCFANEDEAAELVRGEENADSE---AALEFL-AKRCQWAVVTLGPNGCIAKHG 276
L G+++L N+ E + LV E + AA E + + + + VV+LGP G +
Sbjct: 176 LAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDS 235
Query: 277 KEIVKV--PAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333
+ ++V P + K+ GAGD L + SLEE + G +G + + G
Sbjct: 236 ENCIQVVPPPV---KSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQG 291
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 27/183 (14%)
Query: 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGD-------- 225
+ + F E++ IR AK+ G+ +S D+ N+R L +L +
Sbjct: 159 ITIALSTFWLEMVVKIIREAKRNGIKISFDM-------NYRAKLWELEAAKRAYQQLLPL 211
Query: 226 VDLCFANEDEAAELVR-GEENADSEAALE---------FLAKRCQWAVVTLGPNGCIAKH 275
VD C A + +A E D A+ + KR + G +
Sbjct: 212 VDYCSAGQMDAVAFFEISSETTDYYQAMHDKYPNIELFYATKRTVISASHHLLQGHLWTQ 271
Query: 276 GKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLGGE 335
G E + +D G GD + + L+G++ +E K + + G + S+ G+
Sbjct: 272 G-ECWESEEYAIYPIVDRVGGGDAYTAAVLHGILSEWRPDETVKFATAAAG-LKHSIHGD 329
Query: 336 VTP 338
+ P
Sbjct: 330 INP 332
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 232 NEDEAAELVRGEENADSEAALE---FLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEA 288
N+DE + N+D++ + K Q +V+LG +G I KEI +
Sbjct: 181 NKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYID-KEISIKAVNPQG 239
Query: 289 KAIDATGAGDLFASGFLYGLVKGLSLEECCK 319
K ++ G+GD +G + G+ GLS+E+ +
Sbjct: 240 KVVNTVGSGDSTVAGMVAGIASGLSIEKAFQ 270
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 31/243 (12%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL-RMKRGPTGQC- 136
GG+ N G+S GV LI G+D G+ + + VD + + ++ TG
Sbjct: 33 GGAPANVAVGVS-RLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVF 91
Query: 137 VCLVDASGNRTMRPCLS--NAVKIQADELIAEDVKGSKWLVLRFGMF------NFEVIQA 188
V L AS + + ++ N + I E+ K ++ FG + E +
Sbjct: 92 VQLKGASPSFLLYDDVAYFNXTLNDINWDIVEEAK-----IVNFGSVILARNPSRETVXK 146
Query: 189 AIRIAKQEGLSVSMDLA-SFEMVRNFRTPLLQLLESGD--VDLCFANEDEAAELVRGEEN 245
I+ K L ++ D+ ++ R +++LE D+ A+E+E L EN
Sbjct: 147 VIKKIKGSSL-IAFDVNLRLDLWRGQEEEXIKVLEESIKLADIVKASEEEVLYL----EN 201
Query: 246 ADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFL 305
E K +TLGP G + +V VP+ +D TGAGD F + L
Sbjct: 202 QGVEV------KGSXLTAITLGPKGFRLIKNETVVDVPSYN-VNPLDTTGAGDAFXAALL 254
Query: 306 YGL 308
G+
Sbjct: 255 VGI 257
>pdb|3KTN|A Chain A, Crystal Structure Of A Putative 2-Keto-3-Deoxygluconate
Kinase From Enterococcus Faecalis
Length = 346
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 291 IDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSG 325
+D GAGD +A+G LYG + SLE+ + +G
Sbjct: 273 LDRIGAGDAYAAGILYGYSQNWSLEKAVTFATVNG 307
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 101 GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM 148
GA+GDD ++++ + V + R GP+G + +VDAS T+
Sbjct: 77 GAFGDDPAAAQLRAHLRANAVGLDRTVTVPGPSGTAIIVVDASAENTV 124
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 280 VKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLGGEVTPE 339
V VP+ GE + ++ GAGD +GFL L +G SLE+ +G + S G T E
Sbjct: 234 VNVPS-GEVR--NSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFS-DGFCTRE 289
Query: 340 NWQWMRKQMQ 349
+ +++Q+Q
Sbjct: 290 EVERLQQQLQ 299
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 197 GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAAL---- 252
G+ V DL E R + PL Q + +L E++ G+ D ++A+
Sbjct: 134 GIYVKPDLP--EAYRQYLLPLAQGITPNIFEL---------EILTGKNCRDLDSAIAAAK 182
Query: 253 EFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPA-----IGEAKA-IDATGAGDLFASGFLY 306
L+ +W VVT +G ++V V A I ++ D G GDLF + +
Sbjct: 183 SLLSDTLKWVVVT-SASGNEENQEMQVVVVTADSVNVISHSRVKTDLKGTGDLFCAQLIS 241
Query: 307 GLVKGLSLEECC 318
GL+KG +L +
Sbjct: 242 GLLKGKALTDAV 253
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 249 EAALEFLAKRCQWAVVTLGPNGCIAKHGKEI--VKVPAIGEAKAIDATGAGDLFASGFLY 306
+A + L + +W +V+LG G AKH V +P I ++ G+GD +G
Sbjct: 226 QAVSQPLFEGIEWIIVSLGAQGAFAKHNHTFYRVNIPTI---SVLNPVGSGDSTVAGITS 282
Query: 307 GLVKGLSLEECCKVGSCSGG-SVIRSLGGEVTPENWQWMRKQMQI 350
++ + + K + G + + G V N+ + Q+++
Sbjct: 283 AILNHENDHDLLKKANTLGXLNAQEAQTGYVNLNNYDDLFNQIEV 327
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 249 EAALEFLAKRCQWAVVTLGPNGCIAKHGKEI--VKVPAIGEAKAIDATGAGDLFASGFLY 306
+A + L + +W +V+LG G AKH V +P I ++ G+GD +G
Sbjct: 226 QAVSQPLFEGIEWIIVSLGAQGAFAKHNHTFYRVNIPTI---SVLNPVGSGDSTVAGITS 282
Query: 307 GLVKGLSLEECCKVGSCSGG-SVIRSLGGEVTPENWQWMRKQMQI 350
++ + + K + G + + G V N+ + Q+++
Sbjct: 283 AILNHENDHDLLKKANTLGXLNAQEAQTGYVNLNNYDDLFNQIEV 327
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 226 VDLCFANEDEAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAI 285
VD+ N+ EA L+ G+ N A + + ++ G +G + I PA
Sbjct: 169 VDVFIVNDSEA-RLLSGDPNLVKTARI-IREXGPKTLIIKKGEHGALLFTDNGIFAAPAF 226
Query: 286 GEAKAIDATGAGDLFASGFLYGLVK 310
D TGAGD FA GF+ L +
Sbjct: 227 PLESIYDPTGAGDTFAGGFIGHLAR 251
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 249 EAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGL 308
+A+ FL + ++L +G G K+ A E + TGAGD F +G YG
Sbjct: 209 KASNYFLGLGIKKVFISLDADGIFYNDGVSCGKIKAT-EVDVKNVTGAGDSFVAGLGYGY 267
Query: 309 VKGLSLEECCKVGSCSGGSVI 329
+E+ K I
Sbjct: 268 XNKXPIEDIVKFAXTXSNITI 288
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 80/210 (38%), Gaps = 29/210 (13%)
Query: 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLS 153
G+ LI A G+D G ++ + + + + L A G+ + +
Sbjct: 53 GIETRLIAATGNDSNGAWIRQQIKNEPLXLLPDGHFNQHSDTSIILNSADGDNAIITTTA 112
Query: 154 NAVKIQADELI---AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMV 210
A DE I A+ V G ++L+ G F+ + +A + A+ G + + +
Sbjct: 113 AADTFSLDEXIPHXADAVAGD--ILLQQGNFSLDKTRALFQYARSRGXTTVFNPSPVNPD 170
Query: 211 RNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNG 270
PL +D+ NE EA EL++ + V+T G G
Sbjct: 171 FCHLWPL--------IDIAVVNESEA-ELLQ--------------PYGVKTLVITQGAAG 207
Query: 271 CIAKHGKEIVKVPAIGEAKAIDATGAGDLF 300
+ PA+ A+A+D TGAGD F
Sbjct: 208 AWLVQEGQRQFCPAV-PAEALDTTGAGDTF 236
>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase
Length = 387
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 219 QLLESGDVDLCFANEDEAAELVRGEENADSEAALEFL--AKRCQWAVVTLGPNGCIA--- 273
+ E+ L N+ +A E + +A ++ E L AK W GP G
Sbjct: 262 EFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWN----GPVGVFEFPN 317
Query: 274 -KHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSL 332
+ G EIV AI +++A G GD A+ L+G+ +S S GG+ + +
Sbjct: 318 FRKGTEIV-ANAIADSEAFSIAGGGDTLAAIDLFGIADKISYI------STGGGAFLEFV 370
Query: 333 GGEVTP 338
G+V P
Sbjct: 371 EGKVLP 376
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 328 VIRSLGGEVTPENWQWMRKQMQIRGLPIPDT 358
++ S+G + PE W+W K++ P+ DT
Sbjct: 382 ILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 328 VIRSLGGEVTPENWQWMRKQMQIRGLPIPDT 358
++ S+G + PE W+W K++ P+ DT
Sbjct: 382 ILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 328 VIRSLGGEVTPENWQWMRKQMQIRGLPIPDT 358
++ S+G + PE W+W K++ P+ DT
Sbjct: 382 ILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 328 VIRSLGGEVTPENWQWMRKQMQIRGLPIPDT 358
++ S+G + PE W+W K++ P+ DT
Sbjct: 382 ILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,627,107
Number of Sequences: 62578
Number of extensions: 438765
Number of successful extensions: 1113
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 70
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)