Query 018120
Match_columns 360
No_of_seqs 216 out of 1981
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02379 pfkB-type carbohydrat 100.0 6E-59 1.3E-63 434.4 39.8 348 13-360 17-367 (367)
2 PLN02813 pfkB-type carbohydrat 100.0 2.4E-52 5.1E-57 396.0 38.9 331 13-354 67-411 (426)
3 PRK15074 inosine/guanosine kin 100.0 2.9E-52 6.2E-57 392.7 34.8 321 12-343 30-425 (434)
4 cd01168 adenosine_kinase Adeno 100.0 1.7E-48 3.8E-53 359.0 36.3 308 16-336 2-311 (312)
5 PTZ00247 adenosine kinase; Pro 100.0 8.4E-48 1.8E-52 358.9 36.3 314 12-336 2-336 (345)
6 PRK11142 ribokinase; Provision 100.0 1.9E-45 4E-50 338.1 30.9 296 16-349 3-304 (306)
7 KOG2854 Possible pfkB family c 100.0 7.6E-46 1.6E-50 322.8 26.2 315 14-338 5-338 (343)
8 PLN02323 probable fructokinase 100.0 3.6E-45 7.8E-50 339.4 31.8 306 9-350 4-327 (330)
9 PTZ00292 ribokinase; Provision 100.0 6.3E-45 1.4E-49 337.3 31.4 303 14-349 14-325 (326)
10 PLN02548 adenosine kinase 100.0 2.6E-44 5.6E-49 334.0 34.2 306 21-337 1-326 (332)
11 PLN02967 kinase 100.0 2E-44 4.4E-49 346.3 32.3 323 11-356 192-553 (581)
12 PLN02341 pfkB-type carbohydrat 100.0 9.2E-44 2E-48 342.0 35.2 320 10-353 67-412 (470)
13 PLN02543 pfkB-type carbohydrat 100.0 2.9E-44 6.2E-49 342.4 30.7 327 11-359 121-496 (496)
14 cd01174 ribokinase Ribokinase 100.0 1.3E-43 2.9E-48 323.6 30.9 285 17-339 1-291 (292)
15 PRK09850 pseudouridine kinase; 100.0 4.1E-43 8.8E-48 323.2 31.1 299 14-351 3-309 (313)
16 cd01944 YegV_kinase_like YegV- 100.0 8.4E-43 1.8E-47 317.8 31.4 283 17-333 1-289 (289)
17 COG0524 RbsK Sugar kinases, ri 100.0 7.8E-43 1.7E-47 321.3 31.3 302 17-350 1-309 (311)
18 cd01942 ribokinase_group_A Rib 100.0 2E-42 4.2E-47 313.9 29.9 275 17-335 1-279 (279)
19 cd01166 KdgK 2-keto-3-deoxyglu 100.0 1.4E-42 3E-47 317.2 28.3 282 17-334 1-293 (294)
20 cd01945 ribokinase_group_B Rib 100.0 2.5E-42 5.5E-47 313.9 29.5 281 17-339 1-283 (284)
21 cd01939 Ketohexokinase Ketohex 100.0 4.2E-42 9.1E-47 313.3 27.4 276 17-334 1-289 (290)
22 cd01167 bac_FRK Fructokinases 100.0 1.6E-41 3.4E-46 310.4 28.6 276 17-334 1-294 (295)
23 PF00294 PfkB: pfkB family car 100.0 2.8E-42 6E-47 316.2 23.1 288 16-340 2-300 (301)
24 cd01947 Guanosine_kinase_like 100.0 4.6E-41 9.9E-46 302.6 30.0 265 17-335 1-265 (265)
25 TIGR03828 pfkB 1-phosphofructo 100.0 5.5E-41 1.2E-45 308.1 30.1 284 23-350 6-301 (304)
26 TIGR02152 D_ribokin_bact ribok 100.0 6.4E-41 1.4E-45 306.1 30.3 286 23-344 1-292 (293)
27 PRK09434 aminoimidazole ribosi 100.0 6E-41 1.3E-45 307.8 29.5 282 16-344 3-303 (304)
28 cd01940 Fructoselysine_kinase_ 100.0 5.5E-41 1.2E-45 302.0 28.1 260 17-334 1-263 (264)
29 PRK09954 putative kinase; Prov 100.0 3.2E-40 6.9E-45 309.7 32.0 296 14-349 56-360 (362)
30 PRK13508 tagatose-6-phosphate 100.0 2.6E-40 5.5E-45 304.2 29.3 286 24-351 8-307 (309)
31 cd01172 RfaE_like RfaE encodes 100.0 1.9E-40 4.1E-45 304.5 27.1 284 17-338 1-298 (304)
32 PRK10294 6-phosphofructokinase 100.0 8.3E-40 1.8E-44 300.8 30.1 292 17-348 3-307 (309)
33 TIGR02198 rfaE_dom_I rfaE bifu 100.0 8.1E-40 1.8E-44 301.8 30.1 297 12-349 4-315 (315)
34 KOG2855 Ribokinase [Carbohydra 100.0 4E-40 8.7E-45 291.0 25.2 307 10-351 4-327 (330)
35 PRK09513 fruK 1-phosphofructok 100.0 2.8E-39 6.1E-44 297.7 31.4 288 18-349 5-304 (312)
36 TIGR01231 lacC tagatose-6-phos 100.0 1.2E-39 2.7E-44 299.6 28.1 286 24-350 7-306 (309)
37 cd01941 YeiC_kinase_like YeiC- 100.0 2.4E-39 5.3E-44 294.9 28.5 278 18-331 2-288 (288)
38 cd01943 MAK32 MAK32 kinase. M 100.0 8.9E-40 1.9E-44 301.9 23.5 275 17-334 1-304 (328)
39 TIGR03168 1-PFK hexose kinase, 100.0 5.3E-39 1.1E-43 294.8 28.5 283 24-350 7-301 (303)
40 PRK09813 fructoselysine 6-kina 100.0 3.6E-39 7.9E-44 289.3 25.3 256 17-334 2-259 (260)
41 COG1105 FruK Fructose-1-phosph 100.0 2.7E-38 5.9E-43 279.6 26.0 290 18-349 2-305 (310)
42 cd01164 FruK_PfkB_like 1-phosp 100.0 4.9E-38 1.1E-42 286.4 27.1 272 19-334 4-288 (289)
43 PRK11316 bifunctional heptose 100.0 6.9E-38 1.5E-42 304.0 26.1 297 14-350 9-314 (473)
44 PLN02630 pfkB-type carbohydrat 100.0 3.9E-37 8.5E-42 282.9 26.9 274 9-349 5-290 (335)
45 cd01937 ribokinase_group_D Rib 100.0 1.8E-35 4E-40 264.5 26.3 252 17-330 1-254 (254)
46 cd01946 ribokinase_group_C Rib 100.0 5.1E-35 1.1E-39 264.9 26.8 248 74-335 20-276 (277)
47 KOG2947 Carbohydrate kinase [C 100.0 4.8E-33 1.1E-37 231.3 21.4 280 14-334 3-298 (308)
48 COG2870 RfaE ADP-heptose synth 100.0 5.4E-32 1.2E-36 241.1 23.3 296 11-346 6-309 (467)
49 cd00287 ribokinase_pfkB_like r 100.0 5.1E-27 1.1E-31 201.5 22.1 192 17-309 1-196 (196)
50 cd01173 pyridoxal_pyridoxamine 99.7 3.2E-17 6.8E-22 146.5 15.3 161 169-331 71-251 (254)
51 TIGR00687 pyridox_kin pyridoxa 99.7 5.7E-17 1.2E-21 147.3 16.4 161 168-331 72-256 (286)
52 TIGR00097 HMP-P_kinase phospho 99.7 1.9E-16 4.1E-21 141.3 18.4 158 170-331 67-240 (254)
53 PRK12412 pyridoxal kinase; Rev 99.7 2.3E-16 4.9E-21 141.8 17.9 157 171-331 73-246 (268)
54 cd01169 HMPP_kinase 4-amino-5- 99.7 3.4E-16 7.4E-21 138.8 18.5 157 170-330 68-240 (242)
55 PRK06427 bifunctional hydroxy- 99.7 2.7E-16 5.9E-21 141.4 17.4 158 170-331 73-248 (266)
56 PRK12413 phosphomethylpyrimidi 99.7 1.9E-16 4.2E-21 141.4 16.2 218 97-331 4-242 (253)
57 PRK05756 pyridoxamine kinase; 99.7 1.4E-16 3E-21 144.8 15.4 161 168-331 72-255 (286)
58 PRK07105 pyridoxamine kinase; 99.7 9.3E-17 2E-21 145.7 14.3 158 170-332 75-256 (284)
59 PRK08176 pdxK pyridoxal-pyrido 99.7 1.3E-15 2.8E-20 137.8 18.5 159 168-331 86-266 (281)
60 PRK08573 phosphomethylpyrimidi 99.7 1.9E-15 4E-20 145.2 19.7 156 172-331 73-244 (448)
61 PRK12616 pyridoxal kinase; Rev 99.7 1.9E-15 4.1E-20 135.9 16.1 158 170-331 74-249 (270)
62 KOG3009 Predicted carbohydrate 99.7 1.1E-15 2.4E-20 138.7 13.7 250 6-331 331-600 (614)
63 cd01171 YXKO-related B.subtili 99.6 4.7E-14 1E-18 126.0 15.1 159 167-332 74-236 (254)
64 TIGR00196 yjeF_cterm yjeF C-te 99.5 6.3E-13 1.4E-17 119.8 17.9 173 167-349 89-267 (272)
65 PLN02898 HMP-P kinase/thiamin- 99.5 5.9E-13 1.3E-17 130.0 18.0 159 170-332 78-254 (502)
66 PTZ00347 phosphomethylpyrimidi 99.5 9E-13 2E-17 128.8 16.9 155 171-331 300-478 (504)
67 PTZ00344 pyridoxal kinase; Pro 99.5 1.8E-12 3.8E-17 118.3 15.8 156 170-331 77-258 (296)
68 cd01170 THZ_kinase 4-methyl-5- 99.4 6.3E-12 1.4E-16 110.9 15.9 162 166-330 45-221 (242)
69 PRK09517 multifunctional thiam 99.4 3.4E-12 7.4E-17 129.9 16.0 158 170-331 310-484 (755)
70 PRK14713 multifunctional hydro 99.4 1.1E-11 2.4E-16 121.7 17.0 155 170-328 98-269 (530)
71 PF08543 Phos_pyr_kin: Phospho 99.4 6.8E-12 1.5E-16 111.3 13.3 158 170-331 60-234 (246)
72 COG0351 ThiD Hydroxymethylpyri 99.3 6.7E-11 1.4E-15 103.1 16.7 155 172-330 74-244 (263)
73 PLN02978 pyridoxal kinase 99.3 4.9E-11 1.1E-15 109.2 16.1 157 171-331 87-267 (308)
74 PRK09355 hydroxyethylthiazole 99.1 2.3E-09 5.1E-14 95.9 16.6 160 166-329 50-224 (263)
75 COG2240 PdxK Pyridoxal/pyridox 99.0 3.5E-09 7.5E-14 92.9 12.7 160 166-331 69-250 (281)
76 TIGR00694 thiM hydroxyethylthi 99.0 7.2E-09 1.6E-13 92.0 14.9 161 166-329 45-219 (249)
77 PTZ00493 phosphomethylpyrimidi 99.0 3E-08 6.5E-13 90.1 16.4 157 171-331 74-285 (321)
78 PF02110 HK: Hydroxyethylthiaz 98.6 1.7E-06 3.6E-11 75.6 14.8 157 166-324 45-214 (246)
79 COG2145 ThiM Hydroxyethylthiaz 98.5 6.6E-06 1.4E-10 71.1 15.4 154 166-321 51-218 (265)
80 PF01256 Carb_kinase: Carbohyd 98.4 1.2E-05 2.5E-10 70.9 14.7 156 166-329 63-220 (242)
81 PRK10565 putative carbohydrate 98.3 3.8E-05 8.3E-10 75.0 16.3 146 168-324 318-468 (508)
82 KOG2599 Pyridoxal/pyridoxine/p 98.2 2.9E-05 6.4E-10 67.1 11.2 162 166-330 77-262 (308)
83 KOG2598 Phosphomethylpyrimidin 98.0 0.00031 6.8E-09 64.8 14.8 157 170-331 92-283 (523)
84 KOG3974 Predicted sugar kinase 97.8 0.00032 7E-09 60.5 11.7 164 165-333 96-269 (306)
85 PRK03979 ADP-specific phosphof 97.8 0.00086 1.9E-08 63.8 15.6 160 74-241 97-306 (463)
86 PRK14039 ADP-dependent glucoki 97.8 0.0062 1.3E-07 57.9 21.2 163 73-242 85-295 (453)
87 TIGR02045 P_fruct_ADP ADP-spec 97.6 0.004 8.6E-08 59.1 15.8 158 75-240 85-291 (446)
88 COG0063 Predicted sugar kinase 97.4 0.011 2.3E-07 53.3 16.2 150 167-323 98-252 (284)
89 PRK14038 ADP-dependent glucoki 97.0 0.13 2.7E-06 49.2 19.0 161 74-241 105-300 (453)
90 PF04587 ADP_PFK_GK: ADP-speci 97.0 0.005 1.1E-07 59.2 9.9 159 75-241 91-292 (444)
91 cd01938 ADPGK_ADPPFK ADP-depen 95.8 0.11 2.4E-06 49.8 11.3 162 73-241 100-286 (445)
92 KOG4184 Predicted sugar kinase 86.7 4.8 0.0001 36.9 8.6 212 16-241 60-317 (478)
93 PRK10076 pyruvate formate lyas 85.7 6.8 0.00015 33.8 8.9 70 170-243 38-112 (213)
94 PRK00278 trpC indole-3-glycero 78.3 36 0.00077 30.4 11.0 63 165-235 128-190 (260)
95 PF01118 Semialdhyde_dh: Semia 76.2 8.9 0.00019 29.6 5.9 94 100-207 2-99 (121)
96 TIGR00334 5S_RNA_mat_M5 ribonu 73.6 14 0.0003 30.6 6.5 83 170-257 22-107 (174)
97 COG1180 PflA Pyruvate-formate 72.3 42 0.0009 29.9 9.8 81 170-257 83-170 (260)
98 PF10087 DUF2325: Uncharacteri 71.7 10 0.00022 28.0 5.0 79 102-205 4-83 (97)
99 PRK06702 O-acetylhomoserine am 67.2 45 0.00098 32.2 9.5 123 74-234 79-207 (432)
100 COG0269 SgbH 3-hexulose-6-phos 66.6 69 0.0015 27.6 9.3 91 169-267 79-172 (217)
101 PRK05967 cystathionine beta-ly 65.7 49 0.0011 31.6 9.3 36 170-205 149-187 (395)
102 PRK06444 prephenate dehydrogen 60.5 50 0.0011 28.1 7.6 59 97-207 3-61 (197)
103 PRK08114 cystathionine beta-ly 60.0 84 0.0018 30.0 9.8 100 73-205 79-187 (395)
104 PRK05671 aspartate-semialdehyd 59.5 72 0.0016 29.7 9.1 92 96-207 6-99 (336)
105 PRK08040 putative semialdehyde 59.3 78 0.0017 29.5 9.2 93 94-207 4-99 (336)
106 COG0075 Serine-pyruvate aminot 56.8 1.4E+02 0.0029 28.4 10.3 87 94-207 80-171 (383)
107 PRK06598 aspartate-semialdehyd 56.1 68 0.0015 30.3 8.3 95 96-207 3-100 (369)
108 PLN02383 aspartate semialdehyd 55.5 76 0.0016 29.6 8.5 95 93-207 6-102 (344)
109 PRK06728 aspartate-semialdehyd 54.9 82 0.0018 29.4 8.6 94 94-207 5-101 (347)
110 COG0136 Asd Aspartate-semialde 53.6 1.7E+02 0.0036 27.2 10.1 95 95-206 2-98 (334)
111 PF02593 dTMP_synthase: Thymid 53.2 1.4E+02 0.0029 25.9 9.0 137 168-334 49-186 (217)
112 PRK14874 aspartate-semialdehyd 52.9 1.1E+02 0.0025 28.2 9.3 92 95-207 2-96 (334)
113 TIGR02826 RNR_activ_nrdG3 anae 51.9 78 0.0017 25.5 7.0 59 171-236 62-120 (147)
114 PRK09028 cystathionine beta-ly 51.8 1.2E+02 0.0026 28.9 9.4 36 170-205 146-184 (394)
115 PRK08133 O-succinylhomoserine 50.9 91 0.002 29.6 8.5 20 186-205 165-184 (390)
116 PRK07050 cystathionine beta-ly 49.6 1.4E+02 0.003 28.5 9.5 103 73-205 82-188 (394)
117 PRK05968 hypothetical protein; 49.0 1.7E+02 0.0037 27.7 10.0 37 169-205 146-185 (389)
118 PHA00438 hypothetical protein 48.4 15 0.00032 25.7 1.9 18 292-309 45-62 (81)
119 TIGR02494 PFLE_PFLC glycyl-rad 48.0 1.8E+02 0.0038 26.3 9.7 65 172-242 127-198 (295)
120 COG0219 CspR Predicted rRNA me 47.6 31 0.00067 27.9 3.9 40 80-124 14-53 (155)
121 PRK08247 cystathionine gamma-s 47.5 1.6E+02 0.0035 27.5 9.6 36 170-205 136-174 (366)
122 PRK06901 aspartate-semialdehyd 46.9 1.8E+02 0.004 26.8 9.3 89 96-206 5-96 (322)
123 PRK08134 O-acetylhomoserine am 46.9 1.1E+02 0.0023 29.7 8.3 36 170-205 149-187 (433)
124 PRK13957 indole-3-glycerol-pho 46.3 63 0.0014 28.6 6.1 67 165-239 119-185 (247)
125 PF00070 Pyr_redox: Pyridine n 46.3 47 0.001 23.2 4.5 44 81-125 10-59 (80)
126 PRK07582 cystathionine gamma-l 44.0 1.7E+02 0.0037 27.4 9.1 21 185-205 150-170 (366)
127 PRK04169 geranylgeranylglycery 43.2 54 0.0012 28.7 5.1 40 168-207 30-70 (232)
128 KOG0257 Kynurenine aminotransf 42.6 3.1E+02 0.0068 26.2 11.3 50 156-205 158-213 (420)
129 PF03808 Glyco_tran_WecB: Glyc 42.3 1.6E+02 0.0035 24.2 7.8 78 183-269 34-112 (172)
130 PF15632 ATPgrasp_Ter: ATP-gra 41.7 2.9E+02 0.0063 25.6 9.9 58 170-232 40-97 (329)
131 PF10911 DUF2717: Protein of u 41.1 22 0.00048 24.8 1.9 19 291-309 44-62 (77)
132 PF00218 IGPS: Indole-3-glycer 40.7 43 0.00093 29.8 4.2 67 163-237 124-190 (254)
133 PRK11863 N-acetyl-gamma-glutam 40.6 2E+02 0.0044 26.5 8.7 80 96-207 4-83 (313)
134 TIGR01745 asd_gamma aspartate- 40.2 2.4E+02 0.0051 26.7 9.2 94 96-207 2-99 (366)
135 PF04131 NanE: Putative N-acet 39.9 2.3E+02 0.005 23.9 9.5 39 168-207 62-102 (192)
136 PRK15447 putative protease; Pr 39.7 3E+02 0.0064 25.1 11.5 71 169-240 27-104 (301)
137 TIGR01296 asd_B aspartate-semi 39.7 1.9E+02 0.004 27.0 8.5 91 97-207 2-94 (339)
138 PF04036 DUF372: Domain of unk 39.2 62 0.0013 19.3 3.3 35 316-350 3-37 (38)
139 PRK14039 ADP-dependent glucoki 38.7 23 0.00049 34.2 2.3 30 279-308 417-446 (453)
140 PRK07324 transaminase; Validat 38.1 2.9E+02 0.0062 25.9 9.7 36 170-205 153-194 (373)
141 PRK13802 bifunctional indole-3 37.6 72 0.0016 32.9 5.7 61 165-233 128-188 (695)
142 PLN02968 Probable N-acetyl-gam 36.3 1.6E+02 0.0034 28.0 7.5 99 94-208 38-137 (381)
143 KOG0174 20S proteasome, regula 34.9 17 0.00036 30.5 0.6 42 294-335 147-189 (224)
144 cd01483 E1_enzyme_family Super 34.5 2.3E+02 0.0049 22.2 7.9 35 166-202 85-119 (143)
145 PRK07810 O-succinylhomoserine 34.3 4.2E+02 0.0091 25.2 10.5 36 170-205 155-193 (403)
146 TIGR01328 met_gam_lyase methio 34.1 2.2E+02 0.0047 27.0 8.2 37 170-206 144-183 (391)
147 cd00331 IGPS Indole-3-glycerol 34.0 3E+02 0.0064 23.5 11.2 57 168-232 92-148 (217)
148 TIGR01325 O_suc_HS_sulf O-succ 33.9 2.4E+02 0.0053 26.5 8.5 36 170-205 139-177 (380)
149 COG0134 TrpC Indole-3-glycerol 33.3 55 0.0012 29.0 3.6 66 166-239 125-190 (254)
150 COG0373 HemA Glutamyl-tRNA red 33.1 1.5E+02 0.0033 28.4 6.7 126 93-241 173-302 (414)
151 PLN00175 aminotransferase fami 32.5 4.4E+02 0.0095 25.1 10.1 36 170-205 187-228 (413)
152 TIGR00978 asd_EA aspartate-sem 32.5 2.1E+02 0.0047 26.5 7.7 37 167-207 70-106 (341)
153 COG2179 Predicted hydrolase of 32.5 1.6E+02 0.0034 24.4 5.8 68 53-128 48-115 (175)
154 TIGR01851 argC_other N-acetyl- 32.4 2.8E+02 0.0061 25.5 8.2 37 167-207 46-82 (310)
155 cd04915 ACT_AK-Ectoine_2 ACT d 32.4 1.2E+02 0.0025 20.4 4.5 45 97-141 2-50 (66)
156 cd00614 CGS_like CGS_like: Cys 32.3 2.4E+02 0.0051 26.4 8.1 36 170-205 125-163 (369)
157 cd03112 CobW_like The function 31.2 2E+02 0.0044 23.1 6.6 19 98-117 4-22 (158)
158 PRK08248 O-acetylhomoserine am 31.1 2.6E+02 0.0057 26.9 8.3 36 170-205 149-187 (431)
159 KOG4777 Aspartate-semialdehyde 30.9 2.3E+02 0.005 25.3 6.9 97 99-204 9-108 (361)
160 COG1921 SelA Selenocysteine sy 30.7 60 0.0013 30.7 3.6 49 185-235 175-223 (395)
161 TIGR03239 GarL 2-dehydro-3-deo 30.6 3.3E+02 0.0071 24.1 8.2 67 169-240 32-103 (249)
162 PF03841 SelA: L-seryl-tRNA se 30.4 56 0.0012 30.6 3.4 51 183-234 156-212 (367)
163 PRK11145 pflA pyruvate formate 30.4 3.5E+02 0.0077 23.5 8.5 57 172-232 72-130 (246)
164 PF04016 DUF364: Domain of unk 30.1 28 0.00061 28.0 1.3 43 165-207 57-99 (147)
165 PF02571 CbiJ: Precorrin-6x re 30.1 1.2E+02 0.0027 26.8 5.4 85 189-274 58-145 (249)
166 COG1618 Predicted nucleotide k 29.8 3.3E+02 0.0071 22.6 7.6 107 97-204 8-137 (179)
167 COG1712 Predicted dinucleotide 29.4 3.9E+02 0.0085 23.4 9.0 25 100-124 3-27 (255)
168 cd04919 ACT_AK-Hom3_2 ACT doma 29.3 1.1E+02 0.0025 20.0 4.1 43 98-140 2-49 (66)
169 PF11469 Ribonucleas_3_2: Ribo 28.4 92 0.002 23.3 3.5 33 291-323 53-86 (120)
170 TIGR01140 L_thr_O3P_dcar L-thr 28.2 4.3E+02 0.0094 24.1 9.0 26 180-205 141-166 (330)
171 TIGR01324 cysta_beta_ly_B cyst 28.2 5.1E+02 0.011 24.4 11.4 36 170-205 135-173 (377)
172 PRK08249 cystathionine gamma-s 28.0 2.7E+02 0.006 26.4 7.8 37 170-206 149-188 (398)
173 TIGR01329 cysta_beta_ly_E cyst 27.9 3.3E+02 0.0071 25.7 8.3 36 170-205 131-169 (378)
174 PRK10558 alpha-dehydro-beta-de 27.8 3.8E+02 0.0082 23.8 8.1 66 169-239 39-109 (256)
175 TIGR00696 wecB_tagA_cpsF bacte 27.8 3.6E+02 0.0077 22.4 9.3 46 183-230 34-79 (177)
176 COG1646 Predicted phosphate-bi 27.2 1.2E+02 0.0027 26.4 4.6 40 168-207 39-80 (240)
177 TIGR01326 OAH_OAS_sulfhy OAH/O 26.9 3.8E+02 0.0083 25.6 8.7 36 170-205 142-180 (418)
178 TIGR02742 TrbC_Ftype type-F co 26.9 1.4E+02 0.0031 23.5 4.6 32 173-205 2-33 (130)
179 PRK09330 cell division protein 26.6 2.3E+02 0.0049 27.0 6.7 143 74-235 17-171 (384)
180 PRK07121 hypothetical protein; 26.6 99 0.0021 30.3 4.6 23 78-101 28-50 (492)
181 KOG3040 Predicted sugar phosph 26.3 1.8E+02 0.0039 25.1 5.3 105 86-197 29-138 (262)
182 COG1058 CinA Predicted nucleot 26.2 1.8E+02 0.0038 25.9 5.6 28 79-107 20-47 (255)
183 KOG4201 Anthranilate synthase 26.1 1.3E+02 0.0028 25.9 4.5 66 164-237 153-218 (289)
184 PRK05613 O-acetylhomoserine am 26.0 3.8E+02 0.0083 25.9 8.4 23 184-206 172-194 (437)
185 TIGR03128 RuMP_HxlA 3-hexulose 25.9 4E+02 0.0086 22.3 11.3 59 169-232 75-133 (206)
186 PRK09427 bifunctional indole-3 25.8 85 0.0018 30.6 3.9 66 165-238 127-192 (454)
187 COG0036 Rpe Pentose-5-phosphat 25.8 1.7E+02 0.0037 25.3 5.3 53 169-231 83-137 (220)
188 TIGR00065 ftsZ cell division p 25.7 2.5E+02 0.0054 26.3 6.8 42 74-122 21-62 (349)
189 COG0826 Collagenase and relate 25.7 5.6E+02 0.012 24.0 9.2 71 169-240 25-107 (347)
190 TIGR01768 GGGP-family geranylg 25.6 1.7E+02 0.0037 25.4 5.3 39 169-207 26-65 (223)
191 COG0436 Aspartate/tyrosine/aro 25.6 94 0.002 29.6 4.1 37 169-205 162-204 (393)
192 PF00919 UPF0004: Uncharacteri 25.5 2.8E+02 0.0061 20.5 6.1 58 169-231 35-98 (98)
193 cd04726 KGPDC_HPS 3-Keto-L-gul 25.5 3.1E+02 0.0068 22.8 7.1 57 169-232 76-133 (202)
194 PF02659 DUF204: Domain of unk 25.4 1.4E+02 0.0031 20.0 4.0 23 298-321 4-26 (67)
195 PRK04296 thymidine kinase; Pro 25.2 2E+02 0.0044 24.0 5.8 35 170-204 78-113 (190)
196 COG0794 GutQ Predicted sugar p 25.1 3E+02 0.0065 23.5 6.5 34 173-207 90-123 (202)
197 PF09673 TrbC_Ftype: Type-F co 24.2 1.4E+02 0.003 22.7 4.1 32 174-206 2-33 (113)
198 COG2099 CobK Precorrin-6x redu 24.0 2.9E+02 0.0063 24.6 6.4 30 246-275 115-144 (257)
199 PRK13307 bifunctional formalde 23.6 2.9E+02 0.0062 26.4 6.8 57 169-231 249-305 (391)
200 PRK15394 4-deoxy-4-formamido-L 23.6 1.1E+02 0.0025 27.8 4.1 36 82-118 20-55 (296)
201 PRK15452 putative protease; Pr 23.4 6.9E+02 0.015 24.3 10.3 71 167-238 20-103 (443)
202 TIGR01850 argC N-acetyl-gamma- 23.3 2.7E+02 0.0058 26.0 6.6 36 169-208 67-102 (346)
203 PRK07504 O-succinylhomoserine 23.2 4.1E+02 0.0088 25.2 8.0 37 169-205 149-188 (398)
204 cd04924 ACT_AK-Arch_2 ACT doma 22.6 2.2E+02 0.0049 18.3 4.9 43 98-140 2-49 (66)
205 cd00562 NifX_NifB This CD repr 22.6 1.7E+02 0.0038 21.1 4.4 40 79-124 47-86 (102)
206 PRK05939 hypothetical protein; 22.2 6.8E+02 0.015 23.7 11.3 36 170-205 131-169 (397)
207 COG1433 Uncharacterized conser 22.1 1.6E+02 0.0034 22.9 4.0 44 75-124 47-90 (121)
208 smart00642 Aamy Alpha-amylase 22.1 1.1E+02 0.0025 25.0 3.5 25 182-206 68-92 (166)
209 PRK05994 O-acetylhomoserine am 22.1 4.7E+02 0.01 25.1 8.3 37 170-206 148-187 (427)
210 PRK00436 argC N-acetyl-gamma-g 21.9 3.8E+02 0.0082 24.9 7.3 38 167-208 65-102 (343)
211 PRK06234 methionine gamma-lyas 21.9 5E+02 0.011 24.6 8.3 20 186-205 168-189 (400)
212 PRK00125 pyrF orotidine 5'-pho 21.8 5.2E+02 0.011 23.3 7.9 47 184-232 73-122 (278)
213 cd04918 ACT_AK1-AT_2 ACT domai 21.7 2.5E+02 0.0054 18.5 4.7 33 109-141 17-49 (65)
214 COG1058 CinA Predicted nucleot 21.6 1.1E+02 0.0024 27.2 3.4 73 106-204 20-94 (255)
215 cd04868 ACT_AK-like ACT domain 21.5 2.1E+02 0.0045 17.6 5.2 32 108-139 16-47 (60)
216 PRK14106 murD UDP-N-acetylmura 21.4 3.6E+02 0.0078 25.9 7.4 45 76-122 11-55 (450)
217 cd04922 ACT_AKi-HSDH-ThrA_2 AC 21.4 1.9E+02 0.0042 18.7 4.0 43 98-140 2-49 (66)
218 TIGR01826 CofD_related conserv 21.3 5.2E+02 0.011 23.8 7.8 68 166-235 168-250 (310)
219 COG0026 PurK Phosphoribosylami 21.3 2.9E+02 0.0063 26.0 6.2 82 99-192 3-84 (375)
220 PRK07811 cystathionine gamma-s 21.3 3.6E+02 0.0077 25.5 7.2 36 170-205 146-184 (388)
221 PLN02520 bifunctional 3-dehydr 21.3 6.8E+02 0.015 25.0 9.3 89 170-272 110-206 (529)
222 PRK13018 cell division protein 21.2 3.5E+02 0.0077 25.6 6.9 145 74-237 32-188 (378)
223 PLN02509 cystathionine beta-ly 21.1 7E+02 0.015 24.4 9.2 36 170-205 217-255 (464)
224 PRK08057 cobalt-precorrin-6x r 20.9 2E+02 0.0043 25.4 5.0 26 246-272 115-140 (248)
225 TIGR02355 moeB molybdopterin s 20.7 5.8E+02 0.012 22.3 8.5 36 166-203 110-145 (240)
226 PF04230 PS_pyruv_trans: Polys 20.6 3.9E+02 0.0084 22.9 7.0 126 103-236 2-138 (286)
227 PRK13384 delta-aminolevulinic 20.6 4.4E+02 0.0096 24.2 7.0 155 16-206 113-276 (322)
228 cd01485 E1-1_like Ubiquitin ac 20.5 5.2E+02 0.011 21.8 9.1 37 166-204 109-145 (198)
229 PRK13301 putative L-aspartate 20.5 2.4E+02 0.0052 25.3 5.3 39 167-205 82-122 (267)
230 KOG1301 Vesicle trafficking pr 20.5 1.7E+02 0.0038 28.8 4.6 154 96-278 42-210 (621)
231 PF00128 Alpha-amylase: Alpha 20.4 1.3E+02 0.0028 26.8 3.9 33 173-205 41-73 (316)
232 TIGR01769 GGGP geranylgeranylg 20.4 2.9E+02 0.0063 23.7 5.7 39 169-207 23-63 (205)
233 cd02068 radical_SAM_B12_BD B12 20.2 4E+02 0.0086 20.3 6.2 63 169-237 38-102 (127)
234 COG0626 MetC Cystathionine bet 20.1 1.6E+02 0.0034 28.2 4.3 114 53-205 65-187 (396)
No 1
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=6e-59 Score=434.45 Aligned_cols=348 Identities=80% Similarity=1.318 Sum_probs=314.1
Q ss_pred cCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCC---CCCCCceEecCchHHHHHHHH
Q 018120 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHIL---DEPSPIKTIAGGSVTNTIRGL 89 (360)
Q Consensus 13 ~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~GG~a~N~a~~l 89 (360)
.++++|++||+|++||+.++++++||+++++++|.|++++.++...|+..+..+.. .+......++||++.|++++|
T Consensus 17 ~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~l 96 (367)
T PLN02379 17 PRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGL 96 (367)
T ss_pred CCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHH
Confidence 45788999997799999999999999999999999999999999999999875432 122347788999999999999
Q ss_pred HhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccC
Q 018120 90 SVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVK 169 (360)
Q Consensus 90 a~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 169 (360)
+++||.++.++|.||+|.+|+++++.|++.||+++++...+++|+.|+++++++|+|++..++++...++.+++..+.++
T Consensus 97 a~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~~~~~ 176 (367)
T PLN02379 97 SAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTKEDFK 176 (367)
T ss_pred HHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccccCChhHCCHHHHh
Confidence 83399999999999999999999999999999998886656689999999999999999888888788888888878899
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHH
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~ 249 (360)
+++++++++...+.+.+.++++.++++|+++++|++++.+..++++.++++++..++|++++|++|+..+++....++.+
T Consensus 177 ~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~~~~~~~ 256 (367)
T PLN02379 177 GSKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRGEQESDPE 256 (367)
T ss_pred cCCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCCCCCCHH
Confidence 99999999655678999999999999999999999998888889999999885237999999999999999754345678
Q ss_pred HHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchh
Q 018120 250 AALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVI 329 (360)
Q Consensus 250 ~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v 329 (360)
++.+.+..+++.++||+|++|++++++++.+++|+++..+++|||||||+|+|||+|++++|+++++|+++|+++|+.+|
T Consensus 257 ~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~l~~a~~~g~~aAa~vi 336 (367)
T PLN02379 257 AALEFLAKYCNWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLSLEECCKVGACSGGSVV 336 (367)
T ss_pred HHHHHHHhcCCEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999855689999999999999999999999999999999999999999
Q ss_pred cccCCccCcccHHHHHHHHHHcCCCCCCCCC
Q 018120 330 RSLGGEVTPENWQWMRKQMQIRGLPIPDTRT 360 (360)
Q Consensus 330 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (360)
++.|++.+.+.++++.+.++.++++.||.||
T Consensus 337 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (367)
T PLN02379 337 RALGGEVTPENWQWMYKQMQLKGLPVPDLRN 367 (367)
T ss_pred hccCCCCChHHHHHHHHHHHHcCCCCcccCC
Confidence 9999999999999999999999999999986
No 2
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.4e-52 Score=395.96 Aligned_cols=331 Identities=25% Similarity=0.393 Sum_probs=292.7
Q ss_pred cCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhh
Q 018120 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (360)
Q Consensus 13 ~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~ 92 (360)
....+|+++| ++++|+++.++++|+++++++++++.+++.++..++++.... ......+||++.|+|++|++
T Consensus 67 ~~~~~vl~iG-~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~------~~~~~~~GG~~~N~Avalar- 138 (426)
T PLN02813 67 PERWDVLGLG-QAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDG------CSYKASAGGSLSNTLVALAR- 138 (426)
T ss_pred CCcceEEEeC-CceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhc------cCceEecCcHHHHHHHHHHH-
Confidence 4557899999 999999999999999999999999999999999999888664 25789999999999999999
Q ss_pred cC--------CceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCC
Q 018120 93 FG--------VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI 164 (360)
Q Consensus 93 lG--------~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~ 164 (360)
|| .+|.++|.||+|.+|+++++.|++.||++.++...+.+|+.++++++++|+|+++.+.+++..++.+++.
T Consensus 139 LG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~ 218 (426)
T PLN02813 139 LGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCL 218 (426)
T ss_pred hccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCchhhCCccccC
Confidence 99 7999999999999999999999999999998876666899999999999999999998888777777776
Q ss_pred ccccCCCcEEEEe-ecc-cC--HHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhh-ccCCccEEEcCHHHHHHh
Q 018120 165 AEDVKGSKWLVLR-FGM-FN--FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLL-ESGDVDLCFANEDEAAEL 239 (360)
Q Consensus 165 ~~~~~~~~~v~~~-~~~-~~--~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l-~~~~~dil~~n~~E~~~l 239 (360)
.+.+++++++|++ +.. ++ .+.+.++++.++++|++++||+++......+++.+++.+ + ++|++++|++|+..|
T Consensus 219 ~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~--~vDil~~Ne~Ea~~l 296 (426)
T PLN02813 219 ASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGN--YADILFANSDEARAL 296 (426)
T ss_pred HHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHh--cCCEEEeCHHHHHHH
Confidence 6778999999998 321 23 367889999999999999999987655445666666654 5 899999999999999
Q ss_pred hcCCCCCcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCC-CHHHHH
Q 018120 240 VRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL-SLEECC 318 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~-~l~~a~ 318 (360)
++....++.+++.+.+..+.+.||||+|++|++++++++.+++|+++ +++||||||||+|+|||++++++|+ ++++|+
T Consensus 297 ~g~~~~~~~~~a~~~L~~~~~~VVVT~G~~Ga~~~~~~~~~~~pa~~-v~vVDTtGAGDAF~Agfl~~l~~G~~~l~~al 375 (426)
T PLN02813 297 CGLGSEESPESATRYLSHFCPLVSVTDGARGSYIGVKGEAVYIPPSP-CVPVDTCGAGDAYAAGILYGLLRGVSDLRGMG 375 (426)
T ss_pred hCCCCCCCHHHHHHHHHcCCCEEEEEeCCCCeEEEECCEEEEeCCCC-CCcccCCChHHHHHHHHHHHHHcCCCCHHHHH
Confidence 98644456777888888889999999999999999999999999994 7899999999999999999999999 999999
Q ss_pred HHHHHHhcchhcccCCccCcccHHHHHHHHHHcCCC
Q 018120 319 KVGSCSGGSVIRSLGGEVTPENWQWMRKQMQIRGLP 354 (360)
Q Consensus 319 ~~a~~aaa~~v~~~G~~~~~~~~~~~~~~~~~~~~~ 354 (360)
++|+++|+.+|++.|++.+.++++++.+.++.+...
T Consensus 376 ~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~~~~~~ 411 (426)
T PLN02813 376 ELAARVAATVVGQQGTRLRVEDAVELAESFALHLDG 411 (426)
T ss_pred HHHHHHHHHHHcccCCCcCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999876543
No 3
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=2.9e-52 Score=392.68 Aligned_cols=321 Identities=23% Similarity=0.295 Sum_probs=272.9
Q ss_pred ccCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHh
Q 018120 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (360)
Q Consensus 12 ~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~ 91 (360)
.+.+.+|++|| |++||+.+.++++||+++++++|.|++++.++...|+..+..... .....+||+++|+|++|++
T Consensus 30 ~~~~~~v~g~G-NaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~----~~~~~~GGsaaNtA~~lAr 104 (434)
T PRK15074 30 ETSRTYIVGID-QTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNL----ITHEFAGGTIGNTLHNYSV 104 (434)
T ss_pred CCCCCcEEEeC-CceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccc----cccccCCCHHHHHHHHHHH
Confidence 45668999999 999999999999999999999999999999999999999874210 1356799999999999999
Q ss_pred hcC-CceEEEEeecCC-hhHHHHHHHHH--hCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccc
Q 018120 92 GFG-VPCGLIGAYGDD-QQGQLFVSNMQ--FSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAED 167 (360)
Q Consensus 92 ~lG-~~v~~ig~vG~D-~~g~~i~~~l~--~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~ 167 (360)
|| .++.|+|.||+| ++|+++++.|+ +.||+++++...+.+|+.|+++++++|+|+++.+.++...+++++++.+.
T Consensus 105 -LGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~~~ 183 (434)
T PRK15074 105 -LADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQLRPESIPEDV 183 (434)
T ss_pred -cCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhcCChhHCCHhH
Confidence 95 999999999999 79999999997 68999999876666899999999999999999999998999999998888
Q ss_pred cCCCcEEEEe-eccc------CHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHH-hhccCCccEEEcCHHHHHHh
Q 018120 168 VKGSKWLVLR-FGMF------NFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQ-LLESGDVDLCFANEDEAAEL 239 (360)
Q Consensus 168 ~~~~~~v~~~-~~~~------~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~-~l~~~~~dil~~n~~E~~~l 239 (360)
+++++++|++ +... ..+.+.++++.|++.|++|++|++.+.....+++.+.+ +++ ++||+++|++|+..|
T Consensus 184 i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~--~vDILf~NeeEa~~L 261 (434)
T PRK15074 184 IAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKE--HVSILAMNEDEAEAL 261 (434)
T ss_pred hccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHh--cCCEEEcCHHHHHHH
Confidence 9999999998 3321 26788899999999999999999987654444444433 344 899999999999999
Q ss_pred hcCCCCCcHHHHHHHHHcCCCEEEEEeCCCceEEEECC-------EEE--------------------------------
Q 018120 240 VRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGK-------EIV-------------------------------- 280 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~-------~~~-------------------------------- 280 (360)
++. ++++++.+.+...++.|+||+|++|++++..+ ..+
T Consensus 262 tG~---~d~eea~~~L~~~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T PRK15074 262 TGE---SDPLLASDKALDWVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPLRVYS 338 (434)
T ss_pred hCC---CCHHHHHHHHHcCCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhcccccccccccc
Confidence 974 36777777777778999999999999997522 222
Q ss_pred EeCCcC--CCcccCCCCccHHhHHHHHHHHHcCC--------------------CHHHHHHHHHHHhcchhcccCCcc--
Q 018120 281 KVPAIG--EAKAIDATGAGDLFASGFLYGLVKGL--------------------SLEECCKVGSCSGGSVIRSLGGEV-- 336 (360)
Q Consensus 281 ~~~~~~--~~~vvdttGAGD~f~ag~~~~l~~~~--------------------~l~~a~~~a~~aaa~~v~~~G~~~-- 336 (360)
++|+++ .+++||||||||+|.|||+|+|.+|+ ++.+|+++|+++|+.++++.|+++
T Consensus 339 ~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~~ 418 (434)
T PRK15074 339 HIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPRLSR 418 (434)
T ss_pred ccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 788872 37799999999999999999999998 899999999999999999999954
Q ss_pred CcccHHH
Q 018120 337 TPENWQW 343 (360)
Q Consensus 337 ~~~~~~~ 343 (360)
+.|+.++
T Consensus 419 ~~p~~~~ 425 (434)
T PRK15074 419 GLPERED 425 (434)
T ss_pred CCCCccc
Confidence 3454433
No 4
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=1.7e-48 Score=359.02 Aligned_cols=308 Identities=40% Similarity=0.632 Sum_probs=264.2
Q ss_pred CeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCC
Q 018120 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (360)
Q Consensus 16 ~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~ 95 (360)
.+|+++| ++++|+++.++.......++.+|++...+.+......... +....+||++.|+|.+|++ ||.
T Consensus 2 ~~v~~vG-~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~GG~~~N~A~~la~-LG~ 70 (312)
T cd01168 2 YDVLGLG-NALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKL---------PVKYIAGGSAANTIRGAAA-LGG 70 (312)
T ss_pred ceEEEEC-CCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhc---------CccccCCCHHHHHHHHHHH-hcC
Confidence 4699999 9999999999876666666667777776655555554331 2578899999999999999 999
Q ss_pred ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEE
Q 018120 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 175 (360)
++.++|.+|+|.+|+++++.|++.||+++++...+.+|+.++++++++|+|+++.+.+++..++.+++....+++++++|
T Consensus 71 ~~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 150 (312)
T cd01168 71 SAAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDWSLLAKAKYLY 150 (312)
T ss_pred CeEEEEEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCHHHHccCCEEE
Confidence 99999999999999999999999999999888655689999999998999999888888888888888877889999999
Q ss_pred Eee-c-ccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHHHH
Q 018120 176 LRF-G-MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALE 253 (360)
Q Consensus 176 ~~~-~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 253 (360)
++. . ..+++.+..+++.++++|.++++|+.++.....+++.+.++++ ++|++++|++|++.+++....+..+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~d~l~~n~~E~~~l~~~~~~~~~~~a~~ 228 (312)
T cd01168 151 LEGYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLP--YVDILFGNEEEAEALAEAETTDDLEAALK 228 (312)
T ss_pred EEEEecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHh--hCCEEEeCHHHHHHHhCCCCCChHHHHHH
Confidence 993 2 2456899999999999999999999865444455566788888 89999999999999998522234455666
Q ss_pred HHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhcccC
Q 018120 254 FLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLG 333 (360)
Q Consensus 254 ~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~~~G 333 (360)
++..+.+.||||+|++|++++++++.+++|+++..+++|||||||+|+|||++++++|+++++|+++|+++|+.+|++.|
T Consensus 229 l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~~~~a~~~a~~~Aa~~v~~~G 308 (312)
T cd01168 229 LLALRCRIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGSYAAAEVIQQLG 308 (312)
T ss_pred HHhcCCCEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccC
Confidence 77778999999999999999999999999998437899999999999999999999999999999999999999999999
Q ss_pred Ccc
Q 018120 334 GEV 336 (360)
Q Consensus 334 ~~~ 336 (360)
++.
T Consensus 309 ~~~ 311 (312)
T cd01168 309 PRL 311 (312)
T ss_pred CCC
Confidence 764
No 5
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=8.4e-48 Score=358.87 Aligned_cols=314 Identities=25% Similarity=0.344 Sum_probs=260.5
Q ss_pred ccCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHh
Q 018120 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (360)
Q Consensus 12 ~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~ 91 (360)
.+++++|+||| ++++|+++.++++|+.++....|++.+.+.......-.... .......+||++.|+|+++++
T Consensus 2 ~~~~~~i~~iG-~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~GG~~~N~A~~la~ 74 (345)
T PTZ00247 2 SSAPKKLLGFG-NPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELES------IPNVSYVPGGSALNTARVAQW 74 (345)
T ss_pred CCCCceEEEEC-CceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHh------ccCceecCCCHHHHHHHHHHH
Confidence 46788999999 99999999999999999876788888776433332222211 124688999999999999997
Q ss_pred hcC---C-ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCc--
Q 018120 92 GFG---V-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-- 165 (360)
Q Consensus 92 ~lG---~-~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~-- 165 (360)
|| . ++.++|.||+|.+|+.+++.|++.||+++++...+.+|+.++++++ +++|+++.+.+++..+++++++.
T Consensus 75 -lg~~g~~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~-~~~r~~~~~~ga~~~l~~~~i~~~~ 152 (345)
T PTZ00247 75 -MLQAPKGFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVC-GKERSLVANLGAANHLSAEHMQSHA 152 (345)
T ss_pred -HhcCCCCcEEEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEc-CCCcccccCcchhhcCChHHcCcHH
Confidence 64 5 9999999999999999999999999999887644458999999987 47999988888888888888764
Q ss_pred --cccCCCcEEEEee--cccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhc
Q 018120 166 --EDVKGSKWLVLRF--GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 166 --~~~~~~~~v~~~~--~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
+.+++++++|++. ...+.+.+..+++.++++|+++++|++.+.....+++.+.++++ ++|++++|++|++.|++
T Consensus 153 ~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~Dil~~N~~Ea~~l~g 230 (345)
T PTZ00247 153 VQEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLP--YVDILFGNEEEAKTFAK 230 (345)
T ss_pred HHHHHhhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHh--hCCEEEeCHHHHHHHhh
Confidence 2678999999993 23468899999999999999999999865433344566788888 89999999999999998
Q ss_pred CC--CCCcHHHHHHHHHc-------CCCEEEEEeCCCceEEEECCEEEEeCCcCCC--cccCCCCccHHhHHHHHHHHHc
Q 018120 242 GE--ENADSEAALEFLAK-------RCQWAVVTLGPNGCIAKHGKEIVKVPAIGEA--KAIDATGAGDLFASGFLYGLVK 310 (360)
Q Consensus 242 ~~--~~~~~~~~~~~l~~-------~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~--~vvdttGAGD~f~ag~~~~l~~ 310 (360)
.. ..++.+++.+.+.+ +.+.||||+|++|++++++++.+++|+++.. ++||||||||+|+|||++++++
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~ 310 (345)
T PTZ00247 231 AMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYAN 310 (345)
T ss_pred ccCCCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHc
Confidence 32 12356666555432 3678999999999999999998889888532 6899999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcchhcccCCcc
Q 018120 311 GLSLEECCKVGSCSGGSVIRSLGGEV 336 (360)
Q Consensus 311 ~~~l~~a~~~a~~aaa~~v~~~G~~~ 336 (360)
|+++++|+++|+++|+.+|++.|+..
T Consensus 311 g~~~~~al~~a~~aAa~~v~~~Ga~~ 336 (345)
T PTZ00247 311 GKDIDRCVEAGHYSAQVIIQHNGCTY 336 (345)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999885
No 6
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=1.9e-45 Score=338.07 Aligned_cols=296 Identities=23% Similarity=0.332 Sum_probs=246.3
Q ss_pred CeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCC
Q 018120 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (360)
Q Consensus 16 ~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~ 95 (360)
.+|+++| ++++|+++.++ ++|.+ +... +.......+||++.|+|.+|++ ||.
T Consensus 3 ~~i~~iG-~~~~D~~~~~~-----~~p~~-~~~~--------------------~~~~~~~~~GG~~~Nva~~la~-lG~ 54 (306)
T PRK11142 3 GKLVVLG-SINADHVLNLE-----SFPRP-GETL--------------------TGRHYQVAFGGKGANQAVAAAR-LGA 54 (306)
T ss_pred CcEEEEC-CceeeEEEEeC-----CCCCC-CCee--------------------EeccceecCCCcHHHHHHHHHh-cCC
Confidence 4699999 99999999985 55432 2111 1224678899999999999999 999
Q ss_pred ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccccccCCCcccCCc--cccCCCc
Q 018120 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGSK 172 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~ 172 (360)
++.++|.+|+|.+|+.+++.|++.||+++++...+. +|+.++++++++|+|++..+.++...+++++++. +.+++++
T Consensus 55 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (306)
T PRK11142 55 DIAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANAD 134 (306)
T ss_pred cEEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCC
Confidence 999999999999999999999999999999886655 7999999999889999888877767777776652 4578999
Q ss_pred EEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC--CcHHH
Q 018120 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--ADSEA 250 (360)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~--~~~~~ 250 (360)
++|++. ..+.+.+..+++.++++|.++++|++.. .+....+++ ++|++++|++|+..+++.... ++..+
T Consensus 135 ~v~~~~-~~~~~~~~~~~~~a~~~g~~v~~d~~~~------~~~~~~~~~--~~dil~~n~~Ea~~l~g~~~~~~~~~~~ 205 (306)
T PRK11142 135 ALLMQL-ETPLETVLAAAKIAKQHGTKVILNPAPA------RELPDELLA--LVDIITPNETEAEKLTGIRVEDDDDAAK 205 (306)
T ss_pred EEEEeC-CCCHHHHHHHHHHHHHcCCEEEEECCCC------cccCHHHHh--hCCEEcCCHHHHHHHhCCCCCChHHHHH
Confidence 999983 3356888899999999999999999642 111234566 899999999999999985421 23334
Q ss_pred HHHHH-HcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchh
Q 018120 251 ALEFL-AKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVI 329 (360)
Q Consensus 251 ~~~~l-~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v 329 (360)
+.+.+ ..+++.+|||+|++|++++++++.+++|+++ ++++|||||||+|+|||++++++|+++++|+++|+++|+.+|
T Consensus 206 ~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~-v~vvDt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~Aa~~~ 284 (306)
T PRK11142 206 AAQVLHQKGIETVLITLGSRGVWLSENGEGQRVPGFR-VQAVDTIAAGDTFNGALVTALLEGKPLPEAIRFAHAAAAIAV 284 (306)
T ss_pred HHHHHHHhCCCeEEEEECCCcEEEEeCCcceeccCCC-cccccCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 44444 4588999999999999999988888999884 789999999999999999999999999999999999999999
Q ss_pred cccCCccCcccHHHHHHHHH
Q 018120 330 RSLGGEVTPENWQWMRKQMQ 349 (360)
Q Consensus 330 ~~~G~~~~~~~~~~~~~~~~ 349 (360)
++.|+....++.++++++++
T Consensus 285 ~~~G~~~~~~~~~~~~~~~~ 304 (306)
T PRK11142 285 TRKGAQPSIPWREEIDAFLQ 304 (306)
T ss_pred CCCcccccCCCHHHHHHHHh
Confidence 99999877788888877665
No 7
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-46 Score=322.81 Aligned_cols=315 Identities=29% Similarity=0.411 Sum_probs=270.6
Q ss_pred CCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhc
Q 018120 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (360)
Q Consensus 14 ~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~l 93 (360)
++.-.+++| ||+||+.+.++++||++|+++.|...+++.+....+.+.+. ..+....+||++.|+++.+++++
T Consensus 5 ~E~il~G~g-npLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~------~~~~~~~AGGs~qNt~R~aq~~~ 77 (343)
T KOG2854|consen 5 PEGILVGLG-NPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELME------GFNVKYSAGGSAQNTLRIAQWLL 77 (343)
T ss_pred ccceeeccC-ccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhh------cccEEecCCchhHHHHHHHHHHc
Confidence 445578899 99999999999999999999999999988774444433332 24689999999999999999944
Q ss_pred CC--ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCc----cc
Q 018120 94 GV--PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA----ED 167 (360)
Q Consensus 94 G~--~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~ 167 (360)
+. ++.|+|.||.|.+|+.+++.+++.||+.++....+.+|+.|.++++.++ |+++.++++++.++.++++. ..
T Consensus 78 ~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~l 156 (343)
T KOG2854|consen 78 QQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWAL 156 (343)
T ss_pred cCCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhhh
Confidence 43 8999999999999999999999999999999888889999999999766 99999999999999998853 46
Q ss_pred cCCCcEEEEe--ecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCC-
Q 018120 168 VKGSKWLVLR--FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE- 244 (360)
Q Consensus 168 ~~~~~~v~~~--~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~- 244 (360)
++++.++++. +..++|+.+..+.+++.+.+.+.+++++.+++.+.+.+.+.+.++ ++||++.|++|+++++...+
T Consensus 157 veka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~--y~DiifgNe~EA~af~~~~~~ 234 (343)
T KOG2854|consen 157 VEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLP--YADIIFGNEDEAAAFARAHGW 234 (343)
T ss_pred hhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcC--cceEEEcCHHHHHHHHHhhCC
Confidence 7999999999 444679999999999999999999999999999999999999999 99999999999999986542
Q ss_pred -CCcH-HHHHHH-----HH-cCCCEEEEEeCCCceEEEECCEE--EEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCH
Q 018120 245 -NADS-EAALEF-----LA-KRCQWAVVTLGPNGCIAKHGKEI--VKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSL 314 (360)
Q Consensus 245 -~~~~-~~~~~~-----l~-~~~~~vivt~G~~G~~~~~~~~~--~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l 314 (360)
..+. +.+... .. ...+.++||.|.+++++..++.. +.+.+.+..+++||+||||+|.+||+++|.+|.++
T Consensus 235 ~t~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~l 314 (343)
T KOG2854|consen 235 ETKDVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKSL 314 (343)
T ss_pred cccchHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCCH
Confidence 2222 222221 11 34688999999999999988764 45555567899999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhcccCCccCc
Q 018120 315 EECCKVGSCSGGSVIRSLGGEVTP 338 (360)
Q Consensus 315 ~~a~~~a~~aaa~~v~~~G~~~~~ 338 (360)
++|++.|+.+|+.+++..|+..+.
T Consensus 315 ~~cir~g~~aa~~vi~~~G~~~p~ 338 (343)
T KOG2854|consen 315 EECIRAGSYAASHVIRRVGCTVPE 338 (343)
T ss_pred HHHHHHHHHHhhheeeccCCCCCC
Confidence 999999999999999999988653
No 8
>PLN02323 probable fructokinase
Probab=100.00 E-value=3.6e-45 Score=339.42 Aligned_cols=306 Identities=23% Similarity=0.338 Sum_probs=251.9
Q ss_pred cccccCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHH
Q 018120 9 NREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRG 88 (360)
Q Consensus 9 ~~~~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~ 88 (360)
.+...++++|+++| +.++|++..++ +++... .......+||++.|+|.+
T Consensus 4 ~~~~~~~~~i~~iG-~~~vD~~~~~~-----~~~~~~-------------------------~~~~~~~~GG~~~NvA~~ 52 (330)
T PLN02323 4 APSTAESSLVVCFG-EMLIDFVPTVS-----GVSLAE-------------------------APAFKKAPGGAPANVAVG 52 (330)
T ss_pred CCccCCCCcEEEec-hhhhhhccCCC-----CCCccc-------------------------ccceeecCCChHHHHHHH
Confidence 45567788899999 99999998774 332110 113578899999999999
Q ss_pred HHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeeccc--ccccCCCcccCCc
Q 018120 89 LSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIA 165 (360)
Q Consensus 89 la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~ 165 (360)
|++ ||.++.++|.||+|.+|+++++.|++.||+++++...++ +|+.++++++++|+|++..+. ++...++.++++.
T Consensus 53 la~-LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~ 131 (330)
T PLN02323 53 ISR-LGGSSAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL 131 (330)
T ss_pred HHh-cCCceeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh
Confidence 999 999999999999999999999999999999999987765 799999999888999987653 4445677777777
Q ss_pred cccCCCcEEEEee-ccc---CHHHHHHHHHHHHHCCCeEEEeCCChhH----HHhhhHHHHHhhccCCccEEEcCHHHHH
Q 018120 166 EDVKGSKWLVLRF-GMF---NFEVIQAAIRIAKQEGLSVSMDLASFEM----VRNFRTPLLQLLESGDVDLCFANEDEAA 237 (360)
Q Consensus 166 ~~~~~~~~v~~~~-~~~---~~~~~~~~~~~a~~~~~~v~~d~~~~~~----~~~~~~~l~~~l~~~~~dil~~n~~E~~ 237 (360)
+.+.++++++++. ..+ +...+..+++.+++.|.++++|++.... ....++.+.++++ ++|++++|++|+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~ 209 (330)
T PLN02323 132 DLIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWD--EADIIKVSDEEVE 209 (330)
T ss_pred HHHccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHH--hCCEEEcCHHHHH
Confidence 7788999998872 211 1255678899999999999999974211 1234456777787 8999999999999
Q ss_pred HhhcCCCCCcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCC----
Q 018120 238 ELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLS---- 313 (360)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~---- 313 (360)
.+++... .+..++.+++..+.+.||||+|++|++++++++.+++|+++ ++++|||||||+|+|||++++++|++
T Consensus 210 ~l~g~~~-~~~~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~-v~vvDttGAGDaf~Agfl~~l~~g~~~~~~ 287 (330)
T PLN02323 210 FLTGGDD-PDDDTVVKLWHPNLKLLLVTEGEEGCRYYTKDFKGRVEGFK-VKAVDTTGAGDAFVGGLLSQLAKDLSLLED 287 (330)
T ss_pred HHhCCCC-ccHHHHHHHHhcCCCEEEEecCCCceEEEeCCCceEeCCcc-CCCCCCCCcHHHHHHHHHHHHHcCCccccc
Confidence 9998542 22334456666788999999999999999988888999984 78999999999999999999999986
Q ss_pred ---HHHHHHHHHHHhcchhcccCCccCcccHHHHHHHHHH
Q 018120 314 ---LEECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQI 350 (360)
Q Consensus 314 ---l~~a~~~a~~aaa~~v~~~G~~~~~~~~~~~~~~~~~ 350 (360)
+++|+++|+++|+.+|++.|+....++.+++++++++
T Consensus 288 ~~~l~~al~~a~a~Aa~~v~~~g~~~~~~~~~~v~~~l~~ 327 (330)
T PLN02323 288 EERLREALRFANACGAITTTERGAIPALPTKEAVLKLLKK 327 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHHHHHHHH
Confidence 8999999999999999999998778888999888764
No 9
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=6.3e-45 Score=337.34 Aligned_cols=303 Identities=22% Similarity=0.301 Sum_probs=247.8
Q ss_pred CCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhc
Q 018120 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (360)
Q Consensus 14 ~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~l 93 (360)
..++|+++| .+++|+++.++ +++.+.. .. +.......+||++.|+|.+|++ |
T Consensus 14 ~~~~vlviG-~~~vD~~~~~~-----~~~~~~~-~~--------------------~~~~~~~~~GG~~~NvA~~la~-l 65 (326)
T PTZ00292 14 AEPDVVVVG-SSNTDLIGYVD-----RMPQVGE-TL--------------------HGTSFHKGFGGKGANQAVMASK-L 65 (326)
T ss_pred CCCCEEEEc-cceeeEEEecC-----CCCCCCC-ce--------------------eecCceeCCCCcHHHHHHHHHH-c
Confidence 456799999 99999999985 5543321 11 1124678899999999999999 9
Q ss_pred CCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecC-CCCeeEEEEEc-CCCceeeecccccccCCCcccCCc--cccC
Q 018120 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVD-ASGNRTMRPCLSNAVKIQADELIA--EDVK 169 (360)
Q Consensus 94 G~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~-~~t~~~~~~~~-~~g~r~~~~~~~~~~~~~~~~~~~--~~~~ 169 (360)
|.++.++|.||+|.+|+.+++.|++.||+++++...+ .+|+.++++++ .+|+|+++.+.++...++++.++. ..+.
T Consensus 66 G~~~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~ 145 (326)
T PTZ00292 66 GAKVAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTDNIQ 145 (326)
T ss_pred CCCeEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999996554 47999999998 789999887777766777766643 3466
Q ss_pred C-CcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCC--CC
Q 018120 170 G-SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE--NA 246 (360)
Q Consensus 170 ~-~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~--~~ 246 (360)
. +++++++. ..+.+...++++.++++|+++++|++...... ..+.+.++++ ++|++++|++|+..+++... .+
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~-~~~~~~~~l~--~~dii~~n~~E~~~l~g~~~~~~~ 221 (326)
T PTZ00292 146 NICKYLICQN-EIPLETTLDALKEAKERGCYTVFNPAPAPKLA-EVEIIKPFLK--YVSLFCVNEVEAALITGMEVTDTE 221 (326)
T ss_pred hhCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEEECCCCcccc-ccccHHHHHh--cCCEEcCCHHHHHHHhCCCCCChh
Confidence 7 89998872 34678888999999999999999997532111 1145677777 89999999999999988542 12
Q ss_pred cHHHHHH-HHHcCCCEEEEEeCCCceEEEECCE-EEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 018120 247 DSEAALE-FLAKRCQWAVVTLGPNGCIAKHGKE-IVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCS 324 (360)
Q Consensus 247 ~~~~~~~-~l~~~~~~vivt~G~~G~~~~~~~~-~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~a 324 (360)
+...+.+ ++..+++.||||+|++|++++++++ .+++|++ ..+++|||||||+|+|||++++++|+++++|+++|+++
T Consensus 222 ~~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~-~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~a~ 300 (326)
T PTZ00292 222 SAFKASKELQQLGVENVIITLGANGCLIVEKENEPVHVPGK-RVKAVDTTGAGDCFVGSMAYFMSRGKDLKESCKRANRI 300 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCCceEEccCC-ccccCCCcchHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 2333434 4455889999999999999998765 5889988 47899999999999999999999999999999999999
Q ss_pred hcchhcccCCccCcccHHHHHHHHH
Q 018120 325 GGSVIRSLGGEVTPENWQWMRKQMQ 349 (360)
Q Consensus 325 aa~~v~~~G~~~~~~~~~~~~~~~~ 349 (360)
|+.++++.|+....++.+++++.++
T Consensus 301 Aa~~v~~~G~~~~~~~~~~~~~~~~ 325 (326)
T PTZ00292 301 AAISVTRHGTQSSYPHPSELPADVK 325 (326)
T ss_pred HHHHcCCCCccccCCCHHHHHHHhc
Confidence 9999999999988888888887765
No 10
>PLN02548 adenosine kinase
Probab=100.00 E-value=2.6e-44 Score=333.97 Aligned_cols=306 Identities=25% Similarity=0.347 Sum_probs=244.7
Q ss_pred ecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHH---HhhcCCce
Q 018120 21 LQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGL---SVGFGVPC 97 (360)
Q Consensus 21 iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~l---a~~lG~~v 97 (360)
|| |+++|+++.+++++++++++++|.+++...+..+.--.. ....+....+||++.|++..+ ++ +|.++
T Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~~GG~~~Nva~~a~~l~~-lg~~~ 72 (332)
T PLN02548 1 MG-NPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDEL------ASKYNVEYIAGGATQNSIRVAQWMLQ-IPGAT 72 (332)
T ss_pred CC-CceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHH------hccCCceecCCcHHHHHHHHHHHHhc-CCCcE
Confidence 68 999999999999999999999999995433332221111 122357899999999986544 55 79999
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCC----ccccCCCcE
Q 018120 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI----AEDVKGSKW 173 (360)
Q Consensus 98 ~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 173 (360)
.|+|.||+|.+|+++++.|++.||+++++...+.+|+.++++++ +|+|+++.+.++...++.+.+. .+.+..+++
T Consensus 73 ~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (332)
T PLN02548 73 SYMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKF 151 (332)
T ss_pred EEEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCE
Confidence 99999999999999999999999999988654557999999886 7899987776665555555443 234688999
Q ss_pred EEEee--cccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCC--CCcHH
Q 018120 174 LVLRF--GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE--NADSE 249 (360)
Q Consensus 174 v~~~~--~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~--~~~~~ 249 (360)
+|++. ..++++.+..+++.+++++.++.+|++.+......++.+.++++ ++|++++|++|+..+++... .++.+
T Consensus 152 v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~--~~dil~~n~~E~~~l~g~~~~~~~~~~ 229 (332)
T PLN02548 152 YYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALP--YVDFLFGNETEARTFAKVQGWETEDVE 229 (332)
T ss_pred EEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHh--hCCEEEecHHHHHHHhCccCCCcccHH
Confidence 99983 23467888999999999999999999765333334566888888 89999999999999987532 13444
Q ss_pred HHHHHHHc-------CCCEEEEEeCCCceEEEECCEEEEeCCc--CCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHH
Q 018120 250 AALEFLAK-------RCQWAVVTLGPNGCIAKHGKEIVKVPAI--GEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKV 320 (360)
Q Consensus 250 ~~~~~l~~-------~~~~vivt~G~~G~~~~~~~~~~~~~~~--~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~ 320 (360)
++.+.+.+ +++.+|||+|++|++++++++.+++|++ +..+++|||||||+|+|||++++++|+++++|+++
T Consensus 230 ~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~l~eal~~ 309 (332)
T PLN02548 230 EIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKDIEECVRA 309 (332)
T ss_pred HHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44333321 4689999999999999999888888864 34579999999999999999999999999999999
Q ss_pred HHHHhcchhcccCCccC
Q 018120 321 GSCSGGSVIRSLGGEVT 337 (360)
Q Consensus 321 a~~aaa~~v~~~G~~~~ 337 (360)
|+++|+++|++.|+..+
T Consensus 310 a~aaAa~~v~~~G~~~~ 326 (332)
T PLN02548 310 GNYAANVIIQRSGCTYP 326 (332)
T ss_pred HHHHHHHHHhccCCCCC
Confidence 99999999999998753
No 11
>PLN02967 kinase
Probab=100.00 E-value=2e-44 Score=346.30 Aligned_cols=323 Identities=16% Similarity=0.102 Sum_probs=250.2
Q ss_pred cccCCCeEEEecCCeeEEEEeecC--HhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHH
Q 018120 11 EASQAALILGLQPAALIDHVARVD--WSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRG 88 (360)
Q Consensus 11 ~~~~~~~i~~iG~~~~lD~i~~~~--~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~ 88 (360)
.-..++.|+||| .+++|++.... +.++... ..+++... -.++..+...+||+++|+|++
T Consensus 192 ~~~~~~~V~~iG-e~l~D~~p~g~~~~~l~~~~--~~~~~~~~----------------~s~~~~~~~~~GGa~aNVAva 252 (581)
T PLN02967 192 TYGWPPLVCCFG-AAQHAFVPSGRPANRLLDYE--IHERMKDA----------------FWAPEKFVRAPGGSAGGVAIA 252 (581)
T ss_pred cCCCCCeEEEEC-chhheecccCccchhhhhcc--cccccccc----------------ccCccceeeecCcHHHHHHHH
Confidence 334567899999 99999977421 0000000 00000000 012235788999999999999
Q ss_pred HHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeee-cccccccCCCcccCCcc
Q 018120 89 LSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR-PCLSNAVKIQADELIAE 166 (360)
Q Consensus 89 la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~ 166 (360)
|++ ||.++.|+|.||+|.+|+++++.|++.||+++++...+. +|+.++++++++|+|.+. ...++...++.++++..
T Consensus 253 LAR-LG~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~~ 331 (581)
T PLN02967 253 LAS-LGGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINID 331 (581)
T ss_pred HHH-CCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCHh
Confidence 999 999999999999999999999999999999999987765 799999999989987774 45677778888888877
Q ss_pred ccCCCcEEEEe-eccc---CHHHHHHHHHHHHHCCCeEEEeCCChhH----HHhhhHHHHHhhccCCccEEEcCHHHHHH
Q 018120 167 DVKGSKWLVLR-FGMF---NFEVIQAAIRIAKQEGLSVSMDLASFEM----VRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (360)
Q Consensus 167 ~~~~~~~v~~~-~~~~---~~~~~~~~~~~a~~~~~~v~~d~~~~~~----~~~~~~~l~~~l~~~~~dil~~n~~E~~~ 238 (360)
.+.+++++|++ ...+ +.+.+..+++.+++.|++|+||++.+.. ...+++.+.++++ ++|||++|++|+..
T Consensus 332 ~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~--~aDILk~NeeEl~~ 409 (581)
T PLN02967 332 VLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWN--LADIIEVTKQELEF 409 (581)
T ss_pred HhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHH--hCCEEEECHHHHHH
Confidence 88999999999 3222 2478889999999999999999973321 1234456778888 89999999999999
Q ss_pred hhcCCCCC---------------cHHHHHHHHHcCCCEEEEEeCCCceEEEECCE---EEEeCCcCCCc--ccCCCCccH
Q 018120 239 LVRGEENA---------------DSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE---IVKVPAIGEAK--AIDATGAGD 298 (360)
Q Consensus 239 l~~~~~~~---------------~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~---~~~~~~~~~~~--vvdttGAGD 298 (360)
|+|..... ....+..++..+++.||||+|++|+++++++. ...+++++ ++ +||||||||
T Consensus 410 LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~-V~V~vVDTTGAGD 488 (581)
T PLN02967 410 LCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAP-ITPFTSDMSASGD 488 (581)
T ss_pred HhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccCCC-CCCCCCCCCchhH
Confidence 99853210 12334455566889999999999999998754 33445553 44 589999999
Q ss_pred HhHHHHHHHHHcC-------CCHHHHHHHHHHHhcchhcccCCccCcccHHHHHHHHHHcCCCCC
Q 018120 299 LFASGFLYGLVKG-------LSLEECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQIRGLPIP 356 (360)
Q Consensus 299 ~f~ag~~~~l~~~-------~~l~~a~~~a~~aaa~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~ 356 (360)
+|+|||+++|+++ +++++|++||+++||++++..|+..+.|+.+++++..+..+..++
T Consensus 489 AF~AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~~~~~~~~~~~ 553 (581)
T PLN02967 489 GIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDMEDEVEPDPNGIR 553 (581)
T ss_pred HHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHHhhhccCCccccc
Confidence 9999999999973 679999999999999999999999999999999887776554443
No 12
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=9.2e-44 Score=341.99 Aligned_cols=320 Identities=22% Similarity=0.276 Sum_probs=249.1
Q ss_pred ccccCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHH
Q 018120 10 REASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGL 89 (360)
Q Consensus 10 ~~~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~l 89 (360)
....++.+|+++| ++++|+++.++ ++|.+.. +............ ........+|| ++|+|++|
T Consensus 67 ~~~~~~~~vl~lG-~~~vD~i~~V~-----~lP~~~~-------~~~~~~~~~~~~~---~~~~~~~~~GG-~~NvAvaL 129 (470)
T PLN02341 67 SAAGKEIDVATLG-NLCVDIVLPVP-----ELPPPSR-------EERKAYMEELAAS---PPDKKSWEAGG-NCNFAIAA 129 (470)
T ss_pred ccccccccEEEEC-CcceeEEEecC-----CCCCCCH-------HHHHHHHHhhccc---ccccceecCCh-HHHHHHHH
Confidence 4456678999999 99999999995 5653221 1111111111000 00124556788 68999999
Q ss_pred HhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecC---------CCCeeEEEEEcCCCceeeecccccccCCCc
Q 018120 90 SVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR---------GPTGQCVCLVDASGNRTMRPCLSNAVKIQA 160 (360)
Q Consensus 90 a~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~---------~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~ 160 (360)
++ ||.++.++|.||+|.+|+.+++.|++.||++.++...+ .+|+.++++++++|+|.++...........
T Consensus 130 ar-LG~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~ 208 (470)
T PLN02341 130 AR-LGLRCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAF 208 (470)
T ss_pred HH-cCCCeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccch
Confidence 99 99999999999999999999999999999999987654 259999999998898876533221111111
Q ss_pred c---cC---CccccCCCcEEEEe-ec--ccCHHHHHHHHHHHHHCCCeEEEeCCChhH-----HHhhhHHHHHhhccCCc
Q 018120 161 D---EL---IAEDVKGSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEM-----VRNFRTPLLQLLESGDV 226 (360)
Q Consensus 161 ~---~~---~~~~~~~~~~v~~~-~~--~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~-----~~~~~~~l~~~l~~~~~ 226 (360)
+ .+ ..+.++++|+++++ +. .++.+.+..+++.+++.|.++++|++.... .+..++.+.++++ ++
T Consensus 209 ~~~~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~--~~ 286 (470)
T PLN02341 209 SWISKLSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLR--MS 286 (470)
T ss_pred hhhhcccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHh--hC
Confidence 1 11 12457899999999 32 356888999999999999999999974310 1123455778888 89
Q ss_pred cEEEcCHHHHHHhhcCCCCCcHHHHHHHH-HcC--CCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHH
Q 018120 227 DLCFANEDEAAELVRGEENADSEAALEFL-AKR--CQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASG 303 (360)
Q Consensus 227 dil~~n~~E~~~l~~~~~~~~~~~~~~~l-~~~--~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag 303 (360)
|++++|++|+..+++.. +.+++.+.+ ..+ .+.||||+|++|++++++++.+++|++ .++++|||||||+|+||
T Consensus 287 Dil~~Ne~Ea~~l~g~~---~~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~-~v~vVDTtGAGDaF~Ag 362 (470)
T PLN02341 287 DVLLLTSEEAEALTGIR---NPILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAF-KVNVVDTVGCGDSFAAA 362 (470)
T ss_pred CEEEecHHHHHHHhCCC---CHHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCC-CcCCCCCcCccHHHHHH
Confidence 99999999999999853 455555444 445 479999999999999999999999998 48899999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhcchhcccCCccCcccHHHHHHHHHHcCC
Q 018120 304 FLYGLVKGLSLEECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQIRGL 353 (360)
Q Consensus 304 ~~~~l~~~~~l~~a~~~a~~aaa~~v~~~G~~~~~~~~~~~~~~~~~~~~ 353 (360)
|++++++|+++++|+++|+++|+++|++.|+..+.++.+++.++++...+
T Consensus 363 fl~gll~G~~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~~~ 412 (470)
T PLN02341 363 IALGYIHNLPLVNTLTLANAVGAATAMGCGAGRNVATLEKVLELLRASNL 412 (470)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999987765
No 13
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.9e-44 Score=342.42 Aligned_cols=327 Identities=16% Similarity=0.117 Sum_probs=245.6
Q ss_pred cccCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHH
Q 018120 11 EASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLS 90 (360)
Q Consensus 11 ~~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la 90 (360)
+-.-+|+|+||| .+++|++...... +... . ..++..-+. .-+.+..+...+||+++|+|++|+
T Consensus 121 ~~~~~~~v~~~G-e~liDf~~~~~~~-~~~~--~------------~~~~~~~~~-~~~~~~~f~~~~GGa~aNVAvaLA 183 (496)
T PLN02543 121 PYDDPPLVCCFG-AVQKEFVPTVRVH-DNQM--H------------PDMYSQWKM-LQWDPPEFARAPGGPPSNVAISHV 183 (496)
T ss_pred cCCCCCeEEEeC-hhhhhhcCCCccc-cccc--c------------ccccccccc-ccccCCeeEeccCcHHHHHHHHHH
Confidence 344568899999 9999999875210 0000 0 000000000 002234578999999999999999
Q ss_pred hhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEc--CCCceee-ecccccccCCCcccCCcc
Q 018120 91 VGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVD--ASGNRTM-RPCLSNAVKIQADELIAE 166 (360)
Q Consensus 91 ~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~--~~g~r~~-~~~~~~~~~~~~~~~~~~ 166 (360)
+ ||.++.|+|.||+|.+|+++++.|++.||+++++...+. +|+.+++.++ ++|++.+ ....+++..+..++++.+
T Consensus 184 R-LG~~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~~ 262 (496)
T PLN02543 184 R-LGGRAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNLA 262 (496)
T ss_pred H-CCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCHh
Confidence 9 999999999999999999999999999999999998766 7999998874 4454433 234455667888888877
Q ss_pred ccCCCcEEEEe-ecccC---HHHHHHHHHHHHHCCCeEEEeCCChhH----HHhhhHHHHHhhccCCccEEEcCHHHHHH
Q 018120 167 DVKGSKWLVLR-FGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEM----VRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (360)
Q Consensus 167 ~~~~~~~v~~~-~~~~~---~~~~~~~~~~a~~~~~~v~~d~~~~~~----~~~~~~~l~~~l~~~~~dil~~n~~E~~~ 238 (360)
.+.+++++|++ ..... .+.+..+++.++++|++|+||++.+.. ....++.+.++++ ++||+++|++|+..
T Consensus 263 ~l~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~--~aDIl~~SeeEa~~ 340 (496)
T PLN02543 263 VLKEARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWN--EADIIEVSRQELEF 340 (496)
T ss_pred HhCCCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHH--hCCEEEecHHHHHH
Confidence 88999999999 32222 377888999999999999999973211 1233455667788 89999999999999
Q ss_pred hhcCCC--------------------------CCcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcC----CC
Q 018120 239 LVRGEE--------------------------NADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIG----EA 288 (360)
Q Consensus 239 l~~~~~--------------------------~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~----~~ 288 (360)
|+|... ..+.+.+..++..+.+.||||+|++|+++++++....++... ..
T Consensus 341 Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~ 420 (496)
T PLN02543 341 LLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITP 420 (496)
T ss_pred HhCCCcccccccccchhhhhhhhhhhcccccccCCHHHHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCC
Confidence 987530 113455556667788999999999999999864222221110 01
Q ss_pred cccCCCCccHHhHHHHHHHHHc-------CCCHHHHHHHHHHHhcchhcccCCccCcccHHHHHHHHHHcCCCCCCCC
Q 018120 289 KAIDATGAGDLFASGFLYGLVK-------GLSLEECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQIRGLPIPDTR 359 (360)
Q Consensus 289 ~vvdttGAGD~f~ag~~~~l~~-------~~~l~~a~~~a~~aaa~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (360)
.+||||||||+|+|||+++|++ ++++++|+++|+++||++|++.|+..++|+.+++++++++- -.|.+|
T Consensus 421 ~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~--~~~~~~ 496 (496)
T PLN02543 421 FTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQV--YVPSMW 496 (496)
T ss_pred CCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhh--ccccCC
Confidence 2489999999999999999985 67899999999999999999999999999999999988743 345554
No 14
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=1.3e-43 Score=323.63 Aligned_cols=285 Identities=31% Similarity=0.434 Sum_probs=237.0
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| .+++|++..++ +++.+.. .. +......++||++.|+|.+|++ ||.+
T Consensus 1 ~il~iG-~~~~D~~~~~~-----~~~~~~~-~~--------------------~~~~~~~~~GG~~~NvA~~l~~-lG~~ 52 (292)
T cd01174 1 KVVVVG-SINVDLVTRVD-----RLPKPGE-TV--------------------LGSSFETGPGGKGANQAVAAAR-LGAR 52 (292)
T ss_pred CEEEEe-eceeEEEEEec-----CCCCCCC-cE--------------------EeccceecCCCcHHHHHHHHHH-cCCc
Confidence 589999 99999999985 4443221 11 1224678999999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecC-CCCeeEEEEEcCCCceeeecccccccCCCcccCCc--cccCCCcE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGSKW 173 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~-~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 173 (360)
+.++|.+|+|.+|+.+++.|++.||+++++...+ .+|+.++++++.+|+|++..+.++...++++.++. +.++.+++
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T cd01174 53 VAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADV 132 (292)
T ss_pred eEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCE
Confidence 9999999999999999999999999999996554 47999999999889999887777766666665543 45789999
Q ss_pred EEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCC--cHHHH
Q 018120 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA--DSEAA 251 (360)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~--~~~~~ 251 (360)
++++ ...+.+.+..+++.++++|.++++|++.. .+.+.++++ ++|++++|++|++.+++..... +..++
T Consensus 133 v~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~------~~~~~~~~~--~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 203 (292)
T cd01174 133 LLLQ-LEIPLETVLAALRAARRAGVTVILNPAPA------RPLPAELLA--LVDILVPNETEAALLTGIEVTDEEDAEKA 203 (292)
T ss_pred EEEe-CCCCHHHHHHHHHHHHhcCCEEEEeCCCc------CcCcHHHHh--hCCEEeeCHHHHHHHhCCCCCCHHHHHHH
Confidence 9998 33467888999999999999999999753 122345666 8999999999999999865322 23333
Q ss_pred -HHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhc
Q 018120 252 -LEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIR 330 (360)
Q Consensus 252 -~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~ 330 (360)
..+...+++.|+||+|++|++++++++.+++|+++ .+++||+||||+|+|||++++++|+++++|+++|+++|+.+++
T Consensus 204 ~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~-~~~vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~ 282 (292)
T cd01174 204 ARLLLAKGVKNVIVTLGAKGALLASGGEVEHVPAFK-VKAVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAAALSVT 282 (292)
T ss_pred HHHHHHcCCCEEEEEeCCCceEEEeCCceEEecCCC-cccCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 44445689999999999999999988889999885 8899999999999999999999999999999999999999999
Q ss_pred ccCCccCcc
Q 018120 331 SLGGEVTPE 339 (360)
Q Consensus 331 ~~G~~~~~~ 339 (360)
+.|+....|
T Consensus 283 ~~G~~~~~~ 291 (292)
T cd01174 283 RPGAQPSIP 291 (292)
T ss_pred CcCCCCCCC
Confidence 999886655
No 15
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=4.1e-43 Score=323.23 Aligned_cols=299 Identities=20% Similarity=0.193 Sum_probs=239.2
Q ss_pred CCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhc
Q 018120 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (360)
Q Consensus 14 ~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~l 93 (360)
+++.|+|+| +.++|+++.++ .+.+.+.... ......+||++.|+|.+|++ |
T Consensus 3 ~~~~i~~iG-~~~vD~~~~~~------~~~~~~~~~~---------------------~~~~~~~GG~~~NvA~~l~~-l 53 (313)
T PRK09850 3 EKDYVVIIG-SANIDVAGYSH------ESLNYADSNP---------------------GKIKFTPGGVGRNIAQNLAL-L 53 (313)
T ss_pred CCCcEEEEC-cEEEeeeccCC------CcCcCCCCCc---------------------eEEEEeCCcHHHHHHHHHHH-c
Confidence 567899999 99999999863 3333222111 13678899999999999999 9
Q ss_pred CCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecc-cccccCCCcccCC--ccccC
Q 018120 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPC-LSNAVKIQADELI--AEDVK 169 (360)
Q Consensus 94 G~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~-~~~~~~~~~~~~~--~~~~~ 169 (360)
|.++.++|.||+|.+|+.+++.|++.||+++++...++ +|+.++++++++|+|++..+ .+....++.+.+. .+.++
T Consensus 54 G~~~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (313)
T PRK09850 54 GNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQ 133 (313)
T ss_pred CCCeEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999998866665 69999999998999987654 2333444444432 23478
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCC--CCc
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE--NAD 247 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~--~~~ 247 (360)
+++++++++ ..+.+.+..+++.+ .++++++|+++.+. ...+.++++ ++|++++|++|+..+++... .++
T Consensus 134 ~~~~v~~~~-~~~~~~~~~~~~~~--~g~~v~~D~~~~~~----~~~~~~~l~--~~dil~~N~~Ea~~l~g~~~~~~~~ 204 (313)
T PRK09850 134 RAKVIVADC-NISEEALAWILDNA--ANVPVFVDPVSAWK----CVKVRDRLN--QIHTLKPNRLEAETLSGIALSGRED 204 (313)
T ss_pred cCCEEEEeC-CCCHHHHHHHHHhc--cCCCEEEEcCCHHH----HHHHHhhhc--cceEEccCHHHHHHHhCCCCCCHHH
Confidence 999999884 34667777776654 58899999986421 134566777 89999999999999988532 123
Q ss_pred HHHHHHHH-HcCCCEEEEEeCCCceEEEEC-CEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHh
Q 018120 248 SEAALEFL-AKRCQWAVVTLGPNGCIAKHG-KEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSG 325 (360)
Q Consensus 248 ~~~~~~~l-~~~~~~vivt~G~~G~~~~~~-~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aa 325 (360)
.+++.+.+ ..+.+.+|||+|++|++++++ ++..++|++ ..+++|||||||+|+|||++++++|+++++|+++|+++|
T Consensus 205 ~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~-~~~vvDttGAGDaF~agfi~~l~~g~~~~eal~~a~a~a 283 (313)
T PRK09850 205 VAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGWSAPI-KTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCS 283 (313)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCceEEEEcCCCCeEecCCC-CcccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44555544 457889999999999999975 456678887 488999999999999999999999999999999999999
Q ss_pred cchhcccCCccCcccHHHHHHHHHHc
Q 018120 326 GSVIRSLGGEVTPENWQWMRKQMQIR 351 (360)
Q Consensus 326 a~~v~~~G~~~~~~~~~~~~~~~~~~ 351 (360)
+.++++.+.....++.+++.++++.+
T Consensus 284 a~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (313)
T PRK09850 284 SMALSCEYTNNPDLSIANVISLVENA 309 (313)
T ss_pred HHHhcCCCCCCcccCHHHHHHHHHHh
Confidence 99999999999999999999988743
No 16
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=8.4e-43 Score=317.84 Aligned_cols=283 Identities=24% Similarity=0.303 Sum_probs=225.9
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+|+| ++++|++..++ ++|.+. +. ++.......+|| +.|+|.+|++ ||.+
T Consensus 1 ~i~~iG-~~~~D~i~~~~-----~~~~~~-~~--------------------~~~~~~~~~~GG-~~Nva~~l~~-lG~~ 51 (289)
T cd01944 1 KVLVIG-AAVVDIVLDVD-----KLPASG-GD--------------------IEAKSKSYVIGG-GFNVMVAASR-LGIP 51 (289)
T ss_pred CeEEEc-ceeEEEEeecc-----cCCCCC-Cc--------------------cccceeeeccCc-HHHHHHHHHH-cCCC
Confidence 589999 99999999985 444222 11 122357899999 9999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 176 (360)
+.++|.+|+|.+|+++++.|++.||+++++.....+|+.++++++++|+|+++.+.++...++++.++...+.+++++|+
T Consensus 52 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (289)
T cd01944 52 TVNAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATLTVAPYDYVYL 131 (289)
T ss_pred eEEEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccccCCCCCEEEE
Confidence 99999999999999999999999999999887655788888888888999988887777677766666545789999999
Q ss_pred eeccc-----CHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHH
Q 018120 177 RFGMF-----NFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAA 251 (360)
Q Consensus 177 ~~~~~-----~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~ 251 (360)
+...+ ..+.+.++++..+ .+.++++|++..... ...+.+.++++ ++|++++|++|+..+++....+....+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~~~-~~~~~~~~~l~--~~d~~~~n~~E~~~l~g~~~~~~~~~~ 207 (289)
T cd01944 132 SGYTLASENASKVILLEWLEALP-AGTTLVFDPGPRISD-IPDTILQALMA--KRPIWSCNREEAAIFAERGDPAAEASA 207 (289)
T ss_pred eCccccCcchhHHHHHHHHHhcc-CCCEEEEcCcccccc-cCHHHHHHHHh--cCCEEccCHHHHHHHhCCCCcchHHHH
Confidence 83221 2345555555543 578999999743110 01345677788 899999999999999986432222223
Q ss_pred HHHHHcCCCEEEEEeCCCceEEEE-CCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhc
Q 018120 252 LEFLAKRCQWAVVTLGPNGCIAKH-GKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIR 330 (360)
Q Consensus 252 ~~~l~~~~~~vivt~G~~G~~~~~-~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~ 330 (360)
..+...+.+.|+||+|++|+++++ +++.+++|+++ .+++|||||||+|+|||++++++|+++++|+++|+++|+.+|+
T Consensus 208 ~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~-~~vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~a~a~aa~~~~ 286 (289)
T cd01944 208 LRIYAKTAAPVVVRLGSNGAWIRLPDGNTHIIPGFK-VKAVDTIGAGDTHAGGMLAGLAKGMSLADAVLLANAAAAIVVT 286 (289)
T ss_pred HHHHhccCCeEEEEECCCcEEEEecCCCeEEecCCC-CCCccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Confidence 445566788999999999999998 55678888884 7899999999999999999999999999999999999999999
Q ss_pred ccC
Q 018120 331 SLG 333 (360)
Q Consensus 331 ~~G 333 (360)
+.|
T Consensus 287 ~~G 289 (289)
T cd01944 287 RSG 289 (289)
T ss_pred cCC
Confidence 876
No 17
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.8e-43 Score=321.32 Aligned_cols=302 Identities=32% Similarity=0.456 Sum_probs=249.8
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| ++++|++.+.. ++++.... ... .......+||++.|+|+++++ ||.+
T Consensus 1 ~v~~iG-~~~vD~~~~~~----~~~~~~~~-~~~--------------------~~~~~~~~GG~~~N~A~~~a~-lG~~ 53 (311)
T COG0524 1 DVVVIG-EANVDLIAQVV----DRLPEPGE-TVL--------------------GDFFKVAGGGKGANVAVALAR-LGAK 53 (311)
T ss_pred CEEEEC-chhhheehhhc----cCCCCCcc-ccc--------------------ccceeecCCchHHHHHHHHHH-cCCc
Confidence 489999 99999999843 23432211 111 012578899999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeeccccc-ccCCCcccCCccccCCCcEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSN-AVKIQADELIAEDVKGSKWL 174 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~v 174 (360)
+.|+|.||+|.+|+.+++.|++.||+++++...+. +|+.+++.++++|+|.+..+.++ ...++++.++++.+..++++
T Consensus 54 ~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (311)
T COG0524 54 VALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDEDELAGADVL 133 (311)
T ss_pred eEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcChHHHhhcCee
Confidence 99999999999999999999999999999988877 89999999998899999988884 56678888876778899999
Q ss_pred EEe-ec-ccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHHH
Q 018120 175 VLR-FG-MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAAL 252 (360)
Q Consensus 175 ~~~-~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~ 252 (360)
|++ +. ..+++.+..+++.+++.|.++++|++....... ++.++++++ ++|++++|++|++.+++. ..+..++.
T Consensus 134 ~~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~-~~~~~~~l~--~~d~~~~n~~E~~~l~g~--~~~~~~~~ 208 (311)
T COG0524 134 HISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRPALWD-RELLEELLA--LADILFPNEEEAELLTGL--EEDAEAAA 208 (311)
T ss_pred eEEEeecCCChHHHHHHHHHHHHcCCeEEEecCCCccccc-hhhHHHHHh--hCCEEeCCHHHHHHHhCC--CccHHHHH
Confidence 999 22 234589999999999999999999986532211 466778888 999999999999999985 22344433
Q ss_pred -HHHHcCCCEEEEEeCCCceEEEECCE--EEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchh
Q 018120 253 -EFLAKRCQWAVVTLGPNGCIAKHGKE--IVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVI 329 (360)
Q Consensus 253 -~~l~~~~~~vivt~G~~G~~~~~~~~--~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v 329 (360)
.++..+.+.++||+|++|+++++++. .+..++.+..++||||||||+|+|||++++++|+++++|+++|+++|+.++
T Consensus 209 ~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a~a~aa~~~ 288 (311)
T COG0524 209 ALLLAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFANAAAALAV 288 (311)
T ss_pred HHHhhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhh
Confidence 44556889999999999999999854 233333336889999999999999999999999999999999999999999
Q ss_pred cccCCccCcccHHHHHHHHHH
Q 018120 330 RSLGGEVTPENWQWMRKQMQI 350 (360)
Q Consensus 330 ~~~G~~~~~~~~~~~~~~~~~ 350 (360)
++.|+....++.+++..+++.
T Consensus 289 ~~~g~~~~~p~~~~~~~~~~~ 309 (311)
T COG0524 289 TRPGARPSLPTREEVEAFLEE 309 (311)
T ss_pred ccCCCCCCCCCHHHHHHHHhc
Confidence 999999999999999988874
No 18
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2e-42 Score=313.86 Aligned_cols=275 Identities=30% Similarity=0.419 Sum_probs=225.9
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
||+++| ++++|+++.++ ++|.... . .+.......+||++.|+|.+|++ ||.+
T Consensus 1 ~v~~iG-~~~~D~~~~v~-----~~p~~~~-~--------------------~~~~~~~~~~GG~~~Nva~~l~~-lg~~ 52 (279)
T cd01942 1 DVAVVG-HLNYDIILKVE-----SFPGPFE-S--------------------VLVKDLRREFGGSAGNTAVALAK-LGLS 52 (279)
T ss_pred CEEEEe-cceeeeEeecc-----cCCCCCc-e--------------------EecceeeecCCcHHHHHHHHHHH-cCCC
Confidence 699999 99999999985 5543221 0 11235789999999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecC-CCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~-~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 175 (360)
+.++|.+|+|.+|+.+++.|++.||+++++...+ .+|+.++++++++++|++....++...+++++ ....++++++++
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (279)
T cd01942 53 PGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-EADPDGLADIVH 131 (279)
T ss_pred ceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-chhhhcccCEEE
Confidence 9999999999999999999999999999996554 47999999999888988876777666666655 456679999999
Q ss_pred EeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHH---HhhcCCCCCcHHHHH
Q 018120 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA---ELVRGEENADSEAAL 252 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~---~l~~~~~~~~~~~~~ 252 (360)
++.. ..+.++++.++++|.++++|++..... ...+.+.++++ ++|++++|++|+. .+.+.. +..
T Consensus 132 ~~~~----~~~~~~~~~~~~~g~~v~~D~~~~~~~-~~~~~~~~~l~--~~dil~~n~~E~~~l~~~~~~~---~~~--- 198 (279)
T cd01942 132 LSSG----PGLIELARELAAGGITVSFDPGQELPR-LSGEELEEILE--RADILFVNDYEAELLKERTGLS---EAE--- 198 (279)
T ss_pred eCCc----hHHHHHHHHHHHcCCeEEEcchhhhhh-ccHHHHHHHHh--hCCEEecCHHHHHHHHhhcCCC---hHH---
Confidence 9832 156777888888899999999753221 12245677777 8999999999994 454432 221
Q ss_pred HHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhccc
Q 018120 253 EFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSL 332 (360)
Q Consensus 253 ~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~~~ 332 (360)
...+.+.||+|+|++|++++++++.+++|+++..+++|||||||+|+|||++++++|+++++|+++|+++|+.++++.
T Consensus 199 --~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~l~~al~~a~~~Aa~~~~~~ 276 (279)
T cd01942 199 --LASGVRVVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAASLKVERR 276 (279)
T ss_pred --HhcCCCEEEEEECCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccc
Confidence 126789999999999999999999999998745889999999999999999999999999999999999999999999
Q ss_pred CCc
Q 018120 333 GGE 335 (360)
Q Consensus 333 G~~ 335 (360)
|++
T Consensus 277 G~~ 279 (279)
T cd01942 277 GAQ 279 (279)
T ss_pred CCC
Confidence 863
No 19
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=1.4e-42 Score=317.21 Aligned_cols=282 Identities=29% Similarity=0.446 Sum_probs=228.6
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| +.++|++...+... ....+....+||++.|+|.+|++ ||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~~~~~-------------------------------~~~~~~~~~~GG~~~N~a~~la~-lg~~ 47 (294)
T cd01166 1 DVVTIG-EVMVDLSPPGGGRL-------------------------------EQADSFRKFFGGAEANVAVGLAR-LGHR 47 (294)
T ss_pred CeEEec-hhheeeecCCCCcc-------------------------------chhhccccccCChHHHHHHHHHh-cCCc
Confidence 589999 99999998763110 01124678899999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccc--cccCCCcccCCccccCCCcE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS--NAVKIQADELIAEDVKGSKW 173 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 173 (360)
+.++|.+|+|.+|+++++.|++.||+++++...+. +|+.+++.++.+|+|++..+.+ +...++.++++...++++++
T Consensus 48 ~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
T cd01166 48 VALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADH 127 (294)
T ss_pred eEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCE
Confidence 99999999999999999999999999999966555 7999999998778888766532 34566667766667899999
Q ss_pred EEEeecc--c-C--HHHHHHHHHHHHHCCCeEEEeCCChhH---HHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC
Q 018120 174 LVLRFGM--F-N--FEVIQAAIRIAKQEGLSVSMDLASFEM---VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (360)
Q Consensus 174 v~~~~~~--~-~--~~~~~~~~~~a~~~~~~v~~d~~~~~~---~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~ 245 (360)
+|++... . + .+.+.++++.+++.+.++++|++.... ....++.+.++++ ++|++++|+.|++.+++....
T Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~--~~dil~~n~~E~~~l~~~~~~ 205 (294)
T cd01166 128 LHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLP--YVDIVLPSEEEAEALLGDEDP 205 (294)
T ss_pred EEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHH--hCCEEEcCHHHHHHHhCCCCc
Confidence 9999321 1 2 277888999999999999999975321 1123345667777 899999999999999885432
Q ss_pred CcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHh
Q 018120 246 ADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSG 325 (360)
Q Consensus 246 ~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aa 325 (360)
++..+..+.+..+++.++||+|++|++++++++.+++|+++ .+++||+||||+|+|||++++++|+++++|+++|+++|
T Consensus 206 ~~~~~~~~~l~~g~~~viit~G~~G~~~~~~~~~~~~~~~~-~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~a 284 (294)
T cd01166 206 TDAAERALALALGVKAVVVKLGAEGALVYTGGGRVFVPAYP-VEVVDTTGAGDAFAAGFLAGLLEGWDLEEALRFANAAA 284 (294)
T ss_pred hhHHHHHHhhcCCccEEEEEEcCCceEEEECCceEEeCCCC-cccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22222222224578999999999999999998899999985 68999999999999999999999999999999999999
Q ss_pred cchhcccCC
Q 018120 326 GSVIRSLGG 334 (360)
Q Consensus 326 a~~v~~~G~ 334 (360)
+.+|++.|+
T Consensus 285 a~~i~~~G~ 293 (294)
T cd01166 285 ALVVTRPGD 293 (294)
T ss_pred HHHHhcCCC
Confidence 999999885
No 20
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=2.5e-42 Score=313.93 Aligned_cols=281 Identities=26% Similarity=0.397 Sum_probs=230.1
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| .+++|++..++ ++|.... .. +.......+||+++|+|.+|++ ||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~~-----~~p~~~~-~~--------------------~~~~~~~~~GG~~~NvA~~l~~-lG~~ 52 (284)
T cd01945 1 RVLGVG-LAVLDLIYLVA-----SFPGGDG-KI--------------------VATDYAVIGGGNAANAAVAVAR-LGGQ 52 (284)
T ss_pred CEEEEC-cceeEEEEEec-----cCCCCCC-eE--------------------EEeEEEEecCCHHHHHHHHHHH-cCCC
Confidence 589999 99999999984 4543221 11 1124789999999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 175 (360)
+.++|.+|+|.+|+.+++.|++.||+++++...++ +|+.+++ ++.++++.+..+.+....+..++++...+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (284)
T cd01945 53 ARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISITAIDTQAAPDSLPDAILGGADAVL 131 (284)
T ss_pred eEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCHHHhCcCCEEE
Confidence 99999999999999999999999999999988755 6887776 444677777666666666777777776789999999
Q ss_pred EeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHHHHHH
Q 018120 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFL 255 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l 255 (360)
++.. .++...++++.++++|.++++|+.... .++ +.++++ ++|++++|++|++.+++.. +.+.+..+.
T Consensus 132 i~~~--~~~~~~~~~~~~~~~g~~v~~~~~~~~----~~~-~~~~~~--~~dil~~n~~e~~~l~~~~---~~~~~~~l~ 199 (284)
T cd01945 132 VDGR--QPEAALHLAQEARARGIPIPLDLDGGG----LRV-LEELLP--LADHAICSENFLRPNTGSA---DDEALELLA 199 (284)
T ss_pred EcCC--CHHHHHHHHHHHHHcCCCeeEeccCCc----ccc-hHHHhc--cCCEEEeChhHHhhhcCCC---HHHHHHHHH
Confidence 9832 357788899999999997776664321 222 667777 8999999999999998753 223333344
Q ss_pred HcCCCEEEEEeCCCceEEEE-CCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhcccCC
Q 018120 256 AKRCQWAVVTLGPNGCIAKH-GKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLGG 334 (360)
Q Consensus 256 ~~~~~~vivt~G~~G~~~~~-~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~~~G~ 334 (360)
+.+.+.||||+|++|+++++ +++.+++|++ ..+++||+||||+|+|||++++++|+++++|+++|+++|+.+|++.|+
T Consensus 200 ~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~-~~~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~ 278 (284)
T cd01945 200 SLGIPFVAVTLGEAGCLWLERDGELFHVPAF-PVEVVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAAALKCRGLGG 278 (284)
T ss_pred hcCCcEEEEEECCCCeEEEcCCCCEEecCCC-ccccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Confidence 56889999999999999998 7778899998 588999999999999999999999999999999999999999999998
Q ss_pred ccCcc
Q 018120 335 EVTPE 339 (360)
Q Consensus 335 ~~~~~ 339 (360)
..++|
T Consensus 279 ~~~~~ 283 (284)
T cd01945 279 RAGLP 283 (284)
T ss_pred cccCC
Confidence 86655
No 21
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=4.2e-42 Score=313.32 Aligned_cols=276 Identities=22% Similarity=0.315 Sum_probs=221.6
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+|+| ++++|+++.++ ++|.+.. ... .......+||++.|+|.+|++ ||.+
T Consensus 1 ~v~~iG-~~~vD~~~~v~-----~~p~~~~-~~~--------------------~~~~~~~~GG~a~NvA~~la~-lG~~ 52 (290)
T cd01939 1 AVLCVG-LTVLDFITTVD-----KYPFEDS-DQR--------------------TTNGRWQRGGNASNSCTVLRL-LGLS 52 (290)
T ss_pred CEEEEe-eeeeEEEeeec-----CCCCCCc-ceE--------------------eeeeeEecCCCHHHHHHHHHH-cCCc
Confidence 489999 99999999985 5554322 111 113568899999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 175 (360)
+.++|.+|+|++|+++++.|++.||++.++...+. .++.++++++++|+|+++.+.++...++.++++...++++|+++
T Consensus 53 ~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
T cd01939 53 CEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKIDLTQYGWIH 132 (290)
T ss_pred eEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhhhhccCCEEE
Confidence 99999999999999999999999999999866554 46667777777889988877777677777777665568999999
Q ss_pred EeecccCHHHHHHHHHHHHHCC-------CeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcH
Q 018120 176 LRFGMFNFEVIQAAIRIAKQEG-------LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADS 248 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~~-------~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~ 248 (360)
+++. .++...++++.+++.+ +++++|+.. ..+.+.++++ ++|++++|++|+..+ +.. +.
T Consensus 133 ~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~------~~~~~~~~l~--~~di~~~n~~~~~~~-~~~---~~ 198 (290)
T cd01939 133 FEGR--NPDETLRMMQHIEEHNNRRPEIRITISVEVEK------PREELLELAA--YCDVVFVSKDWAQSR-GYK---SP 198 (290)
T ss_pred Eecc--CHHHHHHHHHHHHHhcCcCCCcceEEEEEecc------CchhhhhHHh--hCCEEEEEhHHHHhc-CcC---CH
Confidence 9843 2456667888888766 688899863 2345668888 899999999988764 432 33
Q ss_pred HHHHHHH---HcCCCEEEEEeCCCceEEEEC-CEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCC-HHHHHHHHHH
Q 018120 249 EAALEFL---AKRCQWAVVTLGPNGCIAKHG-KEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLS-LEECCKVGSC 323 (360)
Q Consensus 249 ~~~~~~l---~~~~~~vivt~G~~G~~~~~~-~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~-l~~a~~~a~~ 323 (360)
+++...+ ..+.+.||||+|++|++++.+ ++.+++|+++..+++||+||||+|+|||+|++++|++ +++|+++|++
T Consensus 199 ~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~~~~a~~~a~a 278 (290)
T cd01939 199 EECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDFGNR 278 (290)
T ss_pred HHHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 3333322 236789999999999999876 5678899885567999999999999999999999995 9999999999
Q ss_pred HhcchhcccCC
Q 018120 324 SGGSVIRSLGG 334 (360)
Q Consensus 324 aaa~~v~~~G~ 334 (360)
+|++++++.|.
T Consensus 279 ~aa~~i~~~G~ 289 (290)
T cd01939 279 VASQKCTGVGF 289 (290)
T ss_pred HHHHHHhhhcC
Confidence 99999999874
No 22
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=1.6e-41 Score=310.40 Aligned_cols=276 Identities=24% Similarity=0.355 Sum_probs=226.8
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| +.++|++...+. . .......+||+++|+|.++++ ||.+
T Consensus 1 ~ilviG-~~~~D~~~~~~~-----~-----------------------------~~~~~~~~GG~~~n~a~~l~~-lg~~ 44 (295)
T cd01167 1 KVVCFG-EALIDFIPEGSG-----A-----------------------------PETFTKAPGGAPANVAVALAR-LGGK 44 (295)
T ss_pred CEEEEc-ceeEEEecCCCC-----C-----------------------------CccccccCCCcHHHHHHHHHh-cCCC
Confidence 589999 999999987641 1 014678899999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeec-CCCCeeEEEEEcCCCceeeecccccccCCCccc-CCccccCCCcEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE-LIAEDVKGSKWL 174 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~v 174 (360)
+.++|.+|+|.+|+++++.|+++||++.++... +.+|+.++++++++|+|++..+.++......+. +..+.+++++++
T Consensus 45 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 124 (295)
T cd01167 45 AAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELNPDLLSEADIL 124 (295)
T ss_pred eEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCChhHhccCCEE
Confidence 999999999999999999999999999988754 448999999998889999877665543222222 445668899999
Q ss_pred EEe-eccc---CHHHHHHHHHHHHHCCCeEEEeCCChhH----HHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCC
Q 018120 175 VLR-FGMF---NFEVIQAAIRIAKQEGLSVSMDLASFEM----VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA 246 (360)
Q Consensus 175 ~~~-~~~~---~~~~~~~~~~~a~~~~~~v~~d~~~~~~----~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~ 246 (360)
+++ +..+ ..+.+.++++.+++.+.++++|++.... ...+++.+.++++ ++|++++|++|+..+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~d~l~~n~~E~~~l~~~~--- 199 (295)
T cd01167 125 HFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLE--LADIVKLSDEELELLFGEE--- 199 (295)
T ss_pred EEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHH--hCCEEEecHHHHHHHhCCC---
Confidence 998 2222 1366788999999999999999974311 1123445677888 8999999999999998753
Q ss_pred cHHHHH-HHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCC-------CHHHHH
Q 018120 247 DSEAAL-EFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL-------SLEECC 318 (360)
Q Consensus 247 ~~~~~~-~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~-------~l~~a~ 318 (360)
....+. .+++.+++.++||+|++|++++++++.+++|+++ .+++|||||||+|+|||++++++|+ ++++|+
T Consensus 200 ~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a~~-~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~~~~a~ 278 (295)
T cd01167 200 DPEEIAALLLLFGLKLVLVTRGADGALLYTKGGVGEVPGIP-VEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEAL 278 (295)
T ss_pred CHHHHHHHHhhcCCCEEEEecCCcceEEEECCcceeeCCCC-cceeeCCCccHHHHHHHHHHHHhCCcccccHHHHHHHH
Confidence 333343 4455688999999999999999999899999995 8999999999999999999999999 999999
Q ss_pred HHHHHHhcchhcccCC
Q 018120 319 KVGSCSGGSVIRSLGG 334 (360)
Q Consensus 319 ~~a~~aaa~~v~~~G~ 334 (360)
++|+++|+.+|++.|+
T Consensus 279 ~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 279 RFANAVGALTCTKAGA 294 (295)
T ss_pred HHHHHhhHHHhcccCC
Confidence 9999999999999885
No 23
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=2.8e-42 Score=316.17 Aligned_cols=288 Identities=30% Similarity=0.430 Sum_probs=241.4
Q ss_pred CeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCC
Q 018120 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (360)
Q Consensus 16 ~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~ 95 (360)
.+|+++| ..++|++..++.. ..... +.......+||++.|+|.+|++ ||.
T Consensus 2 ~~v~~iG-~~~iD~~~~~~~~-------~~~~~---------------------~~~~~~~~~GG~~~n~a~~l~~-LG~ 51 (301)
T PF00294_consen 2 KKVLVIG-EVNIDIIGYVDRF-------KGDLV---------------------RVSSVKRSPGGAGANVAIALAR-LGA 51 (301)
T ss_dssp EEEEEES-EEEEEEEEESSSH-------TTSEE---------------------EESEEEEEEESHHHHHHHHHHH-TTS
T ss_pred CcEEEEC-ccceEEEeecCCc-------CCcce---------------------ecceEEEecCcHHHHHHHHHHh-ccC
Confidence 5799999 9999999999521 11100 1235889999999999999999 999
Q ss_pred ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEE
Q 018120 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v 174 (360)
++.++|.+|+|.+|+.+++.|++.||+++++...+. +|+.++++++++|+|++..+.++...++.+.+.+..+.+++++
T Consensus 52 ~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (301)
T PF00294_consen 52 DVALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDELDEEAIDEADIL 131 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHHHHHHHHTESEE
T ss_pred cceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccccccccccccce
Confidence 999999999999999999999999999999987665 7999999999889999988888777777766666778999999
Q ss_pred EEee-c---ccCHHHHHHHHHHHHHCC--CeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcH
Q 018120 175 VLRF-G---MFNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADS 248 (360)
Q Consensus 175 ~~~~-~---~~~~~~~~~~~~~a~~~~--~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~ 248 (360)
+++. . ..+.+.+..+.+.+++.+ .+++.++... .+++.+.++++ ++|++++|++|+..+++... ++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~--~~dil~~n~~E~~~l~~~~~-~~~ 204 (301)
T PF00294_consen 132 HLSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSWD----DLREDLKELLP--YADILKPNEEEAEALTGSKI-DDP 204 (301)
T ss_dssp EEESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGSH----HHHHHHHHHHH--TSSEEEEEHHHHHHHHTCST-SSH
T ss_pred eecccccccccccceeeeccccccccccccccccccccc----ccchhhhhhcc--ccchhccccccccccccccc-cch
Confidence 9994 1 224577777777888877 4555565432 15677888887 99999999999999998652 345
Q ss_pred HHHHHH----HHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 018120 249 EAALEF----LAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCS 324 (360)
Q Consensus 249 ~~~~~~----l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~a 324 (360)
+.+.+. +..+.+.++||+|++|++++++++.+++++++..+++|||||||+|+|||++++++++++++|+++|+++
T Consensus 205 ~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~~a~~~ 284 (301)
T PF00294_consen 205 EDALAALRELQARGVKIVIVTLGEDGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALKFANAA 284 (301)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hhhhccccccchhhhhhhhccccccCcccccccccccccccccccccceeccchhhhHHHHHHHHcCCCHHHHHHHHHHH
Confidence 544443 3468899999999999999999999999996579999999999999999999999999999999999999
Q ss_pred hcchhcccCCccCccc
Q 018120 325 GGSVIRSLGGEVTPEN 340 (360)
Q Consensus 325 aa~~v~~~G~~~~~~~ 340 (360)
|+.+|++.|+..++|+
T Consensus 285 aa~~v~~~g~~~~~p~ 300 (301)
T PF00294_consen 285 AALKVQQPGPRSPLPT 300 (301)
T ss_dssp HHHHHTSSSSSGGTT-
T ss_pred HHHHhCCCCCcCCCCC
Confidence 9999999999987775
No 24
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=4.6e-41 Score=302.61 Aligned_cols=265 Identities=26% Similarity=0.338 Sum_probs=217.0
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| ++++|+++.++ +++.+.+ . .+.......+||++.|+|.+|++ ||.+
T Consensus 1 ~il~iG-~~~iD~~~~~~-----~~~~~~~-~--------------------~~~~~~~~~~GG~~~Nva~~l~~-lG~~ 52 (265)
T cd01947 1 KIAVVG-HVEWDIFLSLD-----APPQPGG-I--------------------SHSSDSRESPGGGGANVAVQLAK-LGND 52 (265)
T ss_pred CEEEEe-eeeEEEEEEec-----CCCCCCc-e--------------------eecccceeecCchHHHHHHHHHH-cCCc
Confidence 689999 99999999985 4432221 1 11235789999999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 176 (360)
+.++|.||+|.+|+.+++.|++ ++++.++...+.+|+.++++++++|+|++....... .++++.+.++++|++|+
T Consensus 53 ~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~~~~~~~~~~~~~ 127 (265)
T cd01947 53 VRFFSNLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGERL----EDDLKWPILDEGDGVFI 127 (265)
T ss_pred eEEEEEecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcceEEecCCCC----cccCCHhHhccCCEEEE
Confidence 9999999999999999999999 999988877666899999999988999887543321 24445566789999999
Q ss_pred eecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHHHHHHH
Q 018120 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLA 256 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l~ 256 (360)
+... ...++++.+++++ .+++|+..... .+.+.++++ ++|++++|++|+..+++ +..+..
T Consensus 128 ~~~~----~~~~~~~~a~~~~-~~~~d~~~~~~----~~~~~~~~~--~~d~~~~n~~e~~~l~~---------~~~~~~ 187 (265)
T cd01947 128 TAAA----VDKEAIRKCRETK-LVILQVTPRVR----VDELNQALI--PLDILIGSRLDPGELVV---------AEKIAG 187 (265)
T ss_pred eccc----ccHHHHHHHHHhC-CeEeccCcccc----chhHHHHhh--hCCEEEeCHHHHHHhhh---------HHHHHh
Confidence 9322 2346667777775 57788865321 134566777 89999999999998763 344556
Q ss_pred cCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhcccCCc
Q 018120 257 KRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLGGE 335 (360)
Q Consensus 257 ~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~~~G~~ 335 (360)
.+.+.++||+|++|++++++++.+++|++ ..+++|||||||+|+|||++++++|+++++|+++|+++|+.++++.|++
T Consensus 188 ~~~~~viit~G~~Ga~~~~~~~~~~~~~~-~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa~~v~~~G~~ 265 (265)
T cd01947 188 PFPRYLIVTEGELGAILYPGGRYNHVPAK-KAKVPDSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGAICVSHFGPY 265 (265)
T ss_pred ccCCEEEEEeCCCCeEEEECCeeEECCCC-CCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 68899999999999999999889999998 5899999999999999999999999999999999999999999999864
No 25
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=5.5e-41 Score=308.13 Aligned_cols=284 Identities=24% Similarity=0.300 Sum_probs=228.7
Q ss_pred CCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCceEEEEe
Q 018120 23 PAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGA 102 (360)
Q Consensus 23 ~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v~~ig~ 102 (360)
.|+.+|+++.++ +++ .|+.. +..+...++||++.|+|.+|++ ||.++.++|.
T Consensus 6 ~~~~~D~~~~~~-----~~~--~g~~~--------------------~~~~~~~~~GG~~~NvA~~la~-lG~~v~~is~ 57 (304)
T TIGR03828 6 LNPAIDLTIELD-----GLT--LGEVN--------------------RVESTRIDAGGKGINVSRVLKN-LGVDVVALGF 57 (304)
T ss_pred cchHHeEEEEcc-----ccc--cCcee--------------------ecccccccCCccHHHHHHHHHH-cCCCeEEEEE
Confidence 479999999996 554 23222 1235789999999999999999 9999999999
Q ss_pred ecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCc------cccCCCcEEEE
Q 018120 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSKWLVL 176 (360)
Q Consensus 103 vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~ 176 (360)
||+| +|+.+++.|++.||+++++... ..|+.++++++.+|+++.+...+. .++.++++. +.+++++++|+
T Consensus 58 vG~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~ 133 (304)
T TIGR03828 58 LGGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPSGTETKLNGPGP--EISEEELEALLEKLRAQLAEGDWLVL 133 (304)
T ss_pred ecCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 9999 6999999999999999988875 468888888888888887655443 344433321 25789999999
Q ss_pred ee---cccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC--CcHHHH
Q 018120 177 RF---GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--ADSEAA 251 (360)
Q Consensus 177 ~~---~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~--~~~~~~ 251 (360)
+. ...+.+.+..+++.+++++.++++|++.. .+++.+.. .+|++++|+.|+..+++.... ++..++
T Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~--------~~~~~~~~-~~~i~~~n~~E~~~l~g~~~~~~~~~~~~ 204 (304)
T TIGR03828 134 SGSLPPGVPPDFYAELIALAREKGAKVILDTSGE--------ALRDGLKA-KPFLIKPNDEELEELFGRELKTLEEIIEA 204 (304)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHcCCEEEEECChH--------HHHHHHhc-CCcEECcCHHHHHHHhCCCCCCHHHHHHH
Confidence 82 22457889999999999999999999742 23343432 679999999999999985421 223333
Q ss_pred -HHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhc
Q 018120 252 -LEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIR 330 (360)
Q Consensus 252 -~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~ 330 (360)
..+++.+.+.||||+|++|++++++++.+++|++ ..+++|||||||+|.|||+++|++|+++++|+++|+++|+.+|+
T Consensus 205 ~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~-~~~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~~a~~~Aa~~~~ 283 (304)
T TIGR03828 205 ARELLDLGAENVLISLGADGALLVTKEGALFAQPP-KGEVVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAGSAAAF 283 (304)
T ss_pred HHHHHHcCCCEEEEccCCCCcEEEcCCceEEEeCC-CccccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 3345568899999999999999998888888887 57899999999999999999999999999999999999999999
Q ss_pred ccCCccCcccHHHHHHHHHH
Q 018120 331 SLGGEVTPENWQWMRKQMQI 350 (360)
Q Consensus 331 ~~G~~~~~~~~~~~~~~~~~ 350 (360)
+.|+. .|+.+++.+++.+
T Consensus 284 ~~G~~--~p~~~~~~~~~~~ 301 (304)
T TIGR03828 284 SEGTG--LPDPEDIEELLPQ 301 (304)
T ss_pred CcCCC--CCCHHHHHHHHhc
Confidence 99975 6788898887763
No 26
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=6.4e-41 Score=306.08 Aligned_cols=286 Identities=25% Similarity=0.375 Sum_probs=235.3
Q ss_pred CCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCceEEEEe
Q 018120 23 PAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGA 102 (360)
Q Consensus 23 ~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v~~ig~ 102 (360)
++.++|+++.++ +++.+.. . ++......++||++.|+|.+|++ ||.++.++|.
T Consensus 1 G~~~~D~~~~~~-----~~p~~~~-~--------------------~~~~~~~~~~GG~~~Nva~~l~~-lg~~~~~~~~ 53 (293)
T TIGR02152 1 GSINMDLVLRTD-----RLPKPGE-T--------------------VHGHSFQIGPGGKGANQAVAAAR-LGAEVSMIGK 53 (293)
T ss_pred CCceEeEEEEeC-----CCCCCCC-c--------------------EecCCceecCCCcHHHHHHHHHH-CCCCEEEEEE
Confidence 178999999995 5553322 1 12235789999999999999999 9999999999
Q ss_pred ecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccccccCCCcccCC--ccccCCCcEEEEeec
Q 018120 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELI--AEDVKGSKWLVLRFG 179 (360)
Q Consensus 103 vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~ 179 (360)
+|+|.+|+++++.|++.||+++++...+. +|+.++++++++|+|+++.+.++...+++++++ .+.+..+|+++++.
T Consensus 54 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (293)
T TIGR02152 54 VGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQL- 132 (293)
T ss_pred ecCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCEEEEec-
Confidence 99999999999999999999999987655 799999999888999887777666667766665 24578999999883
Q ss_pred ccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCC--CCCcHHHHHH-HHH
Q 018120 180 MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE--ENADSEAALE-FLA 256 (360)
Q Consensus 180 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~--~~~~~~~~~~-~l~ 256 (360)
..+.+.+..+++.+++++.++++|++... .....++++ ++|++++|++|+..+++.. +.++.+++.+ +.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~v~~D~~~~~-----~~~~~~~~~--~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 205 (293)
T TIGR02152 133 EIPLETVLEAAKIAKKHGVKVILNPAPAI-----KDLDDELLS--LVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLE 205 (293)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECCcCc-----ccchHHHHh--cCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHH
Confidence 34678889999999999999999997531 111245666 8999999999999998854 2223444444 445
Q ss_pred cCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhcccCCcc
Q 018120 257 KRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLGGEV 336 (360)
Q Consensus 257 ~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~~~G~~~ 336 (360)
.+++.++||+|++|++++++++.+++|+++ .+++||+||||+|+|||++++++|+++++|+++|+++|+.++++.|+..
T Consensus 206 ~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~-~~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~ 284 (293)
T TIGR02152 206 KGVKNVIITLGSKGALLVSKDESKLIPAFK-VKAVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAISVTRKGAQS 284 (293)
T ss_pred cCCCeEEEEeCCCceEEEeCCceeEccCCC-CceeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcccCccc
Confidence 578999999999999999999888898884 7899999999999999999999999999999999999999999999987
Q ss_pred CcccHHHH
Q 018120 337 TPENWQWM 344 (360)
Q Consensus 337 ~~~~~~~~ 344 (360)
+.++.+++
T Consensus 285 ~~~~~~~~ 292 (293)
T TIGR02152 285 SIPYLEEV 292 (293)
T ss_pred CCCChHHc
Confidence 77776654
No 27
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=6e-41 Score=307.80 Aligned_cols=282 Identities=27% Similarity=0.343 Sum_probs=228.6
Q ss_pred CeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCC
Q 018120 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (360)
Q Consensus 16 ~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~ 95 (360)
.+|+++| +.++|++...+ . .....+||+++|+|.+|++ ||.
T Consensus 3 ~~il~iG-~~~iD~~~~~~------~-------------------------------~~~~~~GG~~~N~a~~l~~-LG~ 43 (304)
T PRK09434 3 NKVWVLG-DAVVDLIPEGE------N-------------------------------RYLKCPGGAPANVAVGIAR-LGG 43 (304)
T ss_pred CcEEEec-chheeeecCCC------C-------------------------------ceeeCCCChHHHHHHHHHH-cCC
Confidence 3799999 99999983210 0 2456799999999999999 999
Q ss_pred ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeeccc--ccccCCCcccCCccccCCCc
Q 018120 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDVKGSK 172 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~ 172 (360)
++.++|.+|+|.+|+++++.|++.||++.++...+. +|+.+++.++++|+|++.... ++...++.++++ .+.+++
T Consensus 44 ~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~ 121 (304)
T PRK09434 44 ESGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGE 121 (304)
T ss_pred CceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCC
Confidence 999999999999999999999999999998877655 799999999888999864332 222334444442 367789
Q ss_pred EEEEee-ccc-C--HHHHHHHHHHHHHCCCeEEEeCCChhH----HHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCC
Q 018120 173 WLVLRF-GMF-N--FEVIQAAIRIAKQEGLSVSMDLASFEM----VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE 244 (360)
Q Consensus 173 ~v~~~~-~~~-~--~~~~~~~~~~a~~~~~~v~~d~~~~~~----~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~ 244 (360)
+++++. ... + .....++++.+++++.++++|++.... ...+++.+.++++ ++|++++|++|+..+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~e~~~l~g~~- 198 (304)
T PRK09434 122 WLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALA--LADVVKLSEEELCFLSGTS- 198 (304)
T ss_pred EEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHH--hcceeeCCHHHHHHHhCCC-
Confidence 999982 211 2 256678889999999999999974321 1244566777788 8999999999999998743
Q ss_pred CCcHHHHHHHHHc--CCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCC------CHHH
Q 018120 245 NADSEAALEFLAK--RCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL------SLEE 316 (360)
Q Consensus 245 ~~~~~~~~~~l~~--~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~------~l~~ 316 (360)
+.+++.+.+.. +.+.+|||+|++|++++++++.+++|+++ .+++|||||||+|+|||++++++|+ ++++
T Consensus 199 --~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~-~~~vDttGAGD~f~ag~~~~l~~g~~~~~~~~~~~ 275 (304)
T PRK09434 199 --QLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPS-VDPVDTTGAGDAFVAGLLAGLSQAGLWTDEAELAE 275 (304)
T ss_pred --CHHHHHHHHHhhcCCcEEEEEecCCceEEEeCCceeEeCCCC-CCCCcCCCchHHHHHHHHHHHHcCCCccchHHHHH
Confidence 56666665543 67899999999999999988889999984 7899999999999999999999997 8999
Q ss_pred HHHHHHHHhcchhcccCCccCcccHHHH
Q 018120 317 CCKVGSCSGGSVIRSLGGEVTPENWQWM 344 (360)
Q Consensus 317 a~~~a~~aaa~~v~~~G~~~~~~~~~~~ 344 (360)
|+++|+++|+.++++.|+....++.+++
T Consensus 276 a~~~a~~~Aa~~v~~~g~~~~~~~~~~~ 303 (304)
T PRK09434 276 IIAQAQACGALATTAKGAMTALPNRQEL 303 (304)
T ss_pred HHHHHHHHHHHHHcccCCcCCCCChHHc
Confidence 9999999999999999988777766543
No 28
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=5.5e-41 Score=301.96 Aligned_cols=260 Identities=21% Similarity=0.269 Sum_probs=213.6
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| ..++|++... ...++||++.|+|.+|++ ||.+
T Consensus 1 ~v~~iG-~~~~D~~~~~----------------------------------------~~~~~GG~~~Nva~~la~-lG~~ 38 (264)
T cd01940 1 RLAAIG-DNVVDKYLHL----------------------------------------GKMYPGGNALNVAVYAKR-LGHE 38 (264)
T ss_pred CeEEEc-ceEEEEeccC----------------------------------------ceecCCCcHHHHHHHHHH-cCCC
Confidence 589999 9999998542 347799999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeeccc-ccccCCCcccCCccccCCCcEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-SNAVKIQADELIAEDVKGSKWLV 175 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 175 (360)
+.++|.+|+|++|+++++.|++.||+++++...+.+|+.++++ .++|+|++..+. +......+.+.+...+.++|++|
T Consensus 39 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~-~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 117 (264)
T cd01940 39 SAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVE-LVDGDRIFGLSNKGGVAREHPFEADLEYLSQFDLVH 117 (264)
T ss_pred eeEEecccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEE-ecCCceEEEeecCCcHHhcccCcccHhHHhcCCEEE
Confidence 9999999999999999999999999999998766788888855 467888876543 33222222233334578999999
Q ss_pred EeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHH-HHHHH
Q 018120 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE-AALEF 254 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~-~~~~~ 254 (360)
++ ...+.+.+.++++.++++++++++|++..+. .+.+.++++ ++|++++|++|.. ..+.+ .+..+
T Consensus 118 ~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~----~~~~~~~~~--~~d~~~~~~~~~~-------~~~~~~~~~~l 183 (264)
T cd01940 118 TG-IYSHEGHLEKALQALVGAGALISFDFSDRWD----DDYLQLVCP--YVDFAFFSASDLS-------DEEVKAKLKEA 183 (264)
T ss_pred Ec-ccccHHHHHHHHHHHHHcCCEEEEcCcccCC----HHHHHhhcc--cCCEEEechhhcC-------cchHHHHHHHH
Confidence 99 2223678889999999999999999986421 123556777 8999999987653 12333 34455
Q ss_pred HHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCC-HHHHHHHHHHHhcchhcccC
Q 018120 255 LAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLS-LEECCKVGSCSGGSVIRSLG 333 (360)
Q Consensus 255 l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~-l~~a~~~a~~aaa~~v~~~G 333 (360)
+..+++.+|||+|++|++++++++.+++|++ ..+++|||||||+|+|||++++++|++ +++|+++|+++|+.++++.|
T Consensus 184 ~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~-~~~~vDttGAGDaf~ag~i~~l~~g~~~~~~al~~a~~~aa~~~~~~G 262 (264)
T cd01940 184 VSRGAKLVIVTRGEDGAIAYDGAVFYSVAPR-PVEVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFAAKTCGHEG 262 (264)
T ss_pred HHcCCCEEEEEECCCCeEEEeCCeEEecCCc-CCCCCCCCCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcccC
Confidence 6678899999999999999999888999988 589999999999999999999999999 99999999999999999998
Q ss_pred C
Q 018120 334 G 334 (360)
Q Consensus 334 ~ 334 (360)
+
T Consensus 263 ~ 263 (264)
T cd01940 263 A 263 (264)
T ss_pred C
Confidence 6
No 29
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=3.2e-40 Score=309.72 Aligned_cols=296 Identities=18% Similarity=0.201 Sum_probs=224.6
Q ss_pred CCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhc
Q 018120 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (360)
Q Consensus 14 ~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~l 93 (360)
+...|+++| +.++|+++.++. ++|.+ ++ . .......+||++.|+|++|++ |
T Consensus 56 ~~~~v~viG-~~~vD~~~~~~~----~~p~~-~~-~---------------------~~~~~~~~GG~~~NvA~~lar-L 106 (362)
T PRK09954 56 EQEYCVVVG-AINMDIRGMADI----RYPQA-AS-H---------------------PGTIHCSAGGVGRNIAHNLAL-L 106 (362)
T ss_pred CCccEEEEE-EEEEEEEEeeCC----cCcCC-CC-C---------------------CceEEEecCcHHHHHHHHHHH-c
Confidence 445799999 999999998741 33321 11 0 114678899999999999999 9
Q ss_pred CCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccc--cccCCCcccCCc--ccc
Q 018120 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS--NAVKIQADELIA--EDV 168 (360)
Q Consensus 94 G~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~--~~~~~~~~~~~~--~~~ 168 (360)
|.++.|+|.||+|.+|+++++.|++.||+++++...++ +|+.++++.++++++.+. ..+ ....++++.+.. ..+
T Consensus 107 G~~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 185 (362)
T PRK09954 107 GRDVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLA-INDTHILQQLTPQLLNGSRDLI 185 (362)
T ss_pred CCCeEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEE-EcCchhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998887666 688888888765554443 322 223455544332 346
Q ss_pred CCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC--C
Q 018120 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--A 246 (360)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~--~ 246 (360)
..+++++++. ..+.+.+..+++.+ +++++++|+.+.. ..+.+.++++ ++|++++|++|++.+++.... +
T Consensus 186 ~~~~~v~~~~-~~~~~~~~~~~~~a--~~~~v~~D~~~~~----~~~~~~~~l~--~~dil~~n~~Ea~~l~g~~~~~~~ 256 (362)
T PRK09954 186 RHAGVVLADC-NLTAEALEWVFTLA--DEIPVFVDTVSEF----KAGKIKHWLA--HIHTLKPTQPELEILWGQAITSDA 256 (362)
T ss_pred hcCCEEEEEC-CCCHHHHHHHHHhC--CCCcEEEECCCHH----Hhhhhhhhhc--cccEEecCHHHHHHHcCCCCCCHH
Confidence 7889998874 34566666666665 4789999997532 1233566777 899999999999999985322 2
Q ss_pred cHHHHHH-HHHcCCCEEEEEeCCCceEEEECC-EEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 018120 247 DSEAALE-FLAKRCQWAVVTLGPNGCIAKHGK-EIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCS 324 (360)
Q Consensus 247 ~~~~~~~-~l~~~~~~vivt~G~~G~~~~~~~-~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~a 324 (360)
+..++.+ +...+++.||||+|++|+++++.+ +.+++|+++ ++++|||||||+|+|||++++++|+++++|+++|+++
T Consensus 257 ~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~-v~vvDttGAGDaF~Ag~l~~l~~g~~~~eal~~a~a~ 335 (362)
T PRK09954 257 DRNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPA-HTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAMAC 335 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEeccCCC-cccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2334444 445688999999999999988754 467778874 7899999999999999999999999999999999999
Q ss_pred hcchhcccCCccCcccHHHHHHHHH
Q 018120 325 GGSVIRSLGGEVTPENWQWMRKQMQ 349 (360)
Q Consensus 325 aa~~v~~~G~~~~~~~~~~~~~~~~ 349 (360)
|++++.+..+.....+.+.++++++
T Consensus 336 Aal~~~s~~~~~~~~~~~~~~~~~~ 360 (362)
T PRK09954 336 AAISRASGSLNNPTLSADNALSLVP 360 (362)
T ss_pred HHHHhcCCCcCCCcCCHHHHHHHhc
Confidence 9999776554444456666666653
No 30
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=2.6e-40 Score=304.17 Aligned_cols=286 Identities=20% Similarity=0.267 Sum_probs=221.9
Q ss_pred CeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCceEEEEee
Q 018120 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (360)
Q Consensus 24 ~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v~~ig~v 103 (360)
||.+|+++.++ +++ .++... .......+||++.|+|.+|++ ||.++.++|.+
T Consensus 8 np~~D~~~~~~-----~~~--~~~~~~--------------------~~~~~~~~GG~~~NvA~~la~-LG~~~~~~~~v 59 (309)
T PRK13508 8 NPSIDISYPLD-----ELK--LDTVNR--------------------VVDVSKTAGGKGLNVTRVLSE-FGENVLATGLI 59 (309)
T ss_pred ChHHeEEEEeC-----Cee--eCCeEE--------------------ecceeecCCchHHHHHHHHHH-cCCCeEEEEEe
Confidence 89999999995 442 222221 225778999999999999999 99999999999
Q ss_pred cCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCC------ccccCCCcEEEEe
Q 018120 104 GDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVKGSKWLVLR 177 (360)
Q Consensus 104 G~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~ 177 (360)
|+ .+|+.+++.|++ ||+++++.. +++|+.++++++ +|+|+++...++. ++.+... .+.++++|++|++
T Consensus 60 Gd-~~G~~i~~~l~~-gI~~~~~~~-~~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (309)
T PRK13508 60 GG-ELGQFIAEHLDD-QIKHAFYKI-KGETRNCIAILH-EGQQTEILEKGPE--ISVQEADGFLHHFKQLLESVEVVAIS 133 (309)
T ss_pred cC-hhHHHHHHHHHc-CCCceEEEC-CCCCeeeEEEEe-CCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 96 689999999999 999987665 456888888776 7888887665442 3332221 2347899999998
Q ss_pred ec---ccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHHH--
Q 018120 178 FG---MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAAL-- 252 (360)
Q Consensus 178 ~~---~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~-- 252 (360)
+. ..+.+.+..+++.+++.|+++++|++... . ..+...+. ++|++++|++|+..+++....++.+.+.
T Consensus 134 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~-~~~~~~~~--~~dii~~n~~E~~~l~g~~~~~~~~~~~~~ 206 (309)
T PRK13508 134 GSLPAGLPVDYYAQLIELANQAGKPVVLDCSGAA----L-QAVLESPY--KPTVIKPNIEELSQLLGKEVSEDLDELKEV 206 (309)
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCEEEEECCcHH----H-HHHHhccC--CceEEccCHHHHHHHhCCCCCCCHHHHHHH
Confidence 32 22457788899999999999999997531 1 22222344 7999999999999999864222333322
Q ss_pred --HHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhc
Q 018120 253 --EFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIR 330 (360)
Q Consensus 253 --~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~ 330 (360)
+++..+++.|+||+|++|++++++++.+++|++ .++++|||||||+|+|||++++++|+++++|+++|+++|+++++
T Consensus 207 ~~~~~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~-~v~vvDttGAGDaF~Agfi~~l~~g~~~~~al~~a~a~aa~~~~ 285 (309)
T PRK13508 207 LQQPLFEGIEWIIVSLGADGAFAKHNDTFYKVDIP-KIEVVNPVGSGDSTVAGIASGLLHQEDDADLLKKANVLGMLNAQ 285 (309)
T ss_pred HHHHHHcCCCEEEEecCCCceEEEeCCceEEEeCC-CccccCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 334558899999999999999988888888888 58899999999999999999999999999999999999999999
Q ss_pred ccCCcc-CcccHHHHHHHHHHc
Q 018120 331 SLGGEV-TPENWQWMRKQMQIR 351 (360)
Q Consensus 331 ~~G~~~-~~~~~~~~~~~~~~~ 351 (360)
+.+... ....+++++++++.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~i~~~ 307 (309)
T PRK13508 286 EKQTGHVNMANYDELYNQIEVK 307 (309)
T ss_pred CcCcCCCCHHHHHHHHhceEEE
Confidence 988652 444556776666544
No 31
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=1.9e-40 Score=304.54 Aligned_cols=284 Identities=25% Similarity=0.340 Sum_probs=219.3
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| +.++|+++.++. .+++..... .. .........+|| +.|+|.+|++ ||.+
T Consensus 1 ~vl~iG-~~~~D~~~~~~~---~~~~~~~~~-~~------------------~~~~~~~~~~GG-~~NvA~~la~-LG~~ 55 (304)
T cd01172 1 KVLVVG-DVILDEYLYGDV---ERISPEAPV-PV------------------VKVEREEIRLGG-AANVANNLAS-LGAK 55 (304)
T ss_pred CEEEEc-ceeEEeeEeecc---ccccCCCCc-ce------------------EEeeeEEecCcH-HHHHHHHHHH-hCCC
Confidence 589999 999999998631 133211100 00 001135678999 6899999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccC------CccccCC
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADEL------IAEDVKG 170 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~------~~~~~~~ 170 (360)
+.++|.+|+|.+|+++++.|++.||+++++...+.+|+.+++++++ +++.+..+......++.... ....+++
T Consensus 56 ~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (304)
T cd01172 56 VTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLPE 134 (304)
T ss_pred eEEEEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999865444468888888775 45555444333333332211 1235789
Q ss_pred CcEEEEe-e--cccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCC--C
Q 018120 171 SKWLVLR-F--GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE--N 245 (360)
Q Consensus 171 ~~~v~~~-~--~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~--~ 245 (360)
+|+++++ + ..++++.+..+++.+++.+.++++|++... +..++ ++|++++|++|+..+++... .
T Consensus 135 ~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~---------~~~~~--~~d~l~~n~~E~~~l~~~~~~~~ 203 (304)
T cd01172 135 ADVVILSDYGKGVLTPRVIEALIAAARELGIPVLVDPKGRD---------YSKYR--GATLLTPNEKEAREALGDEINDD 203 (304)
T ss_pred CCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc---------hhhcc--CCcEeCCCHHHHHHHhCCCCCCh
Confidence 9999997 2 245678899999999999999999997531 14455 89999999999999998531 1
Q ss_pred CcHHHHHHHH-H-cCCCEEEEEeCCCceEEEE-CCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHH
Q 018120 246 ADSEAALEFL-A-KRCQWAVVTLGPNGCIAKH-GKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGS 322 (360)
Q Consensus 246 ~~~~~~~~~l-~-~~~~~vivt~G~~G~~~~~-~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~ 322 (360)
++.+++.+.+ . .+++.+|||+|++|+++++ +++.+++|+++ ++++|||||||+|+|||++++++|+++++|+++|+
T Consensus 204 ~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~-~~vvdttGAGDaf~ag~i~~l~~g~~~~~al~~a~ 282 (304)
T cd01172 204 DELEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIPALA-KEVYDVTGAGDTVIATLALALAAGADLEEAAFLAN 282 (304)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCcEEEecCCC-CCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2344444433 3 4789999999999999998 77889999995 88999999999999999999999999999999999
Q ss_pred HHhcchhcccCCccCc
Q 018120 323 CSGGSVIRSLGGEVTP 338 (360)
Q Consensus 323 ~aaa~~v~~~G~~~~~ 338 (360)
++|+.+|++.|+....
T Consensus 283 a~Aa~~~~~~g~~~~~ 298 (304)
T cd01172 283 AAAGVVVGKVGTAPVT 298 (304)
T ss_pred HHhheeeecCCCCCcC
Confidence 9999999999987543
No 32
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=8.3e-40 Score=300.77 Aligned_cols=292 Identities=22% Similarity=0.284 Sum_probs=227.2
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++-.||.+|+++.++ ++ +.|+... .......+||++.|+|++|++ ||.+
T Consensus 3 ~i~~~~~~p~~d~~~~~~-----~~--~~~~~~~--------------------~~~~~~~~GG~~~NvA~~l~~-lG~~ 54 (309)
T PRK10294 3 RIYTLTLAPSLDSATITP-----QI--YPEGKLR--------------------CSAPVFEPGGGGINVARAIAH-LGGS 54 (309)
T ss_pred eEEEEecChHHeEEEEeC-----ce--eeCCeEE--------------------eccceecCCccHHHHHHHHHH-cCCC
Confidence 477777899999999995 44 2333332 235778899999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCc-----cccCCC
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-----EDVKGS 171 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~ 171 (360)
+.+++.+|+ ++|+++++.|++.||++.++...+..++.++++.+++|+|+++...+. .++.++++. ..++++
T Consensus 55 ~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 131 (309)
T PRK10294 55 ATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIESG 131 (309)
T ss_pred eEEEEEecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCC--CCCHHHHHHHHHHHHhcCCC
Confidence 999999996 799999999999999999998765545445566777888887655443 344444332 236789
Q ss_pred cEEEEeec---ccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC--C
Q 018120 172 KWLVLRFG---MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--A 246 (360)
Q Consensus 172 ~~v~~~~~---~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~--~ 246 (360)
++++++.. ..+.+.+.++++.+++.|.++++|++... +...+...++|++++|++|+..|++.... +
T Consensus 132 ~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--------~~~~~~~~~~~~i~~n~~E~~~l~g~~~~~~~ 203 (309)
T PRK10294 132 AILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGDA--------LSAALAIGNIELVKPNQKELSALVNRDLTQPD 203 (309)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCHH--------HHHHHhcCCCeEECCCHHHHHHHhCCCCCCHH
Confidence 99999822 22458889999999999999999997531 22221112799999999999999986422 2
Q ss_pred cHHHHHH-HHHcC-CCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 018120 247 DSEAALE-FLAKR-CQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCS 324 (360)
Q Consensus 247 ~~~~~~~-~l~~~-~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~a 324 (360)
+.+++.+ ++..+ .+.++||+|++|++++++++.++++++ .++++|||||||+|+|||++++++|+++++|+++|+++
T Consensus 204 ~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~-~v~vvDttGAGDaf~ag~l~~l~~g~~~~~al~~a~a~ 282 (309)
T PRK10294 204 DVRKAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQVVPP-PVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAA 282 (309)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCCCceEEEcCCccEEEeCC-CcccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2334444 44555 789999999999999988888888888 47899999999999999999999999999999999999
Q ss_pred hcchhcccCCcc-CcccHHHHHHHH
Q 018120 325 GGSVIRSLGGEV-TPENWQWMRKQM 348 (360)
Q Consensus 325 aa~~v~~~G~~~-~~~~~~~~~~~~ 348 (360)
|+.+|++.|++. +.+.++++.+++
T Consensus 283 aa~~v~~~G~~~~~~~~~~~~~~~~ 307 (309)
T PRK10294 283 GSAATLNQGTRLCSHDDTQKIYAYL 307 (309)
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHHh
Confidence 999999999874 445555555543
No 33
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=8.1e-40 Score=301.83 Aligned_cols=297 Identities=23% Similarity=0.292 Sum_probs=225.0
Q ss_pred ccCCCeEEEecCCeeEEEEeecCHhHHhhCCC-CCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHH
Q 018120 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPG-ERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLS 90 (360)
Q Consensus 12 ~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la 90 (360)
..+.++|+++| ..++|+++..+- .+++. ..+. ..........+|| ++|+|.+|+
T Consensus 4 ~~~~~~il~iG-~~~iD~~~~~~~---~~~~~~~~~~--------------------~~~~~~~~~~~GG-a~NvA~~l~ 58 (315)
T TIGR02198 4 SFKGAKVLVVG-DVMLDRYWYGKV---SRISPEAPVP--------------------VVKVEREEDRLGG-AANVARNIA 58 (315)
T ss_pred hhCCCcEEEEC-ceeEeeeeeecc---cccCCCCCCc--------------------eEEEEEEEecCcH-HHHHHHHHH
Confidence 34688999999 999999987310 12210 0000 0001135678999 799999999
Q ss_pred hhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccccccCCCccc----CC-
Q 018120 91 VGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADE----LI- 164 (360)
Q Consensus 91 ~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~----~~- 164 (360)
+ ||.++.++|.||+|.+|+++++.|++.||++.++...++ +|+.+++++++++..+ .........++.+. +.
T Consensus 59 ~-lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 136 (315)
T TIGR02198 59 S-LGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQQLL-RVDFEERDPINAELEARLLAA 136 (315)
T ss_pred h-cCCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCeEEE-EecCCCCCCCCHHHHHHHHHH
Confidence 9 999999999999999999999999999999998877655 7999998887543222 21222111233211 11
Q ss_pred -ccccCCCcEEEEe-e--cccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhh
Q 018120 165 -AEDVKGSKWLVLR-F--GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (360)
Q Consensus 165 -~~~~~~~~~v~~~-~--~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~ 240 (360)
...++++|+++++ + ..++++.+..+++.++++|+++++|+++. .+..++ ++|++++|++|++.++
T Consensus 137 ~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---------~~~~~~--~~d~l~~n~~E~~~l~ 205 (315)
T TIGR02198 137 IREQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGK---------DFSRYR--GATLITPNRKEAEAAV 205 (315)
T ss_pred HHhhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCc---------chhhcC--CCcEECCCHHHHHHHh
Confidence 2347899999998 2 34568889999999999999999999742 123455 8999999999999998
Q ss_pred cCCC-CCcHHHH-HHHHH-cCCCEEEEEeCCCceEEEEC-CEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHH
Q 018120 241 RGEE-NADSEAA-LEFLA-KRCQWAVVTLGPNGCIAKHG-KEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEE 316 (360)
Q Consensus 241 ~~~~-~~~~~~~-~~~l~-~~~~~vivt~G~~G~~~~~~-~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~ 316 (360)
+... .++..++ ..++. .+.+.||||+|++|++++++ ++.+++|+++ .+++||+||||+|.|||++++++|+++++
T Consensus 206 ~~~~~~~~~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~-~~vvdt~GAGDaf~ag~~~~l~~g~~~~~ 284 (315)
T TIGR02198 206 GACDTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPAQA-REVYDVTGAGDTVIATLALALAAGASLEE 284 (315)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCeEEecCCC-CCCCCCcCccHHHHHHHHHHHHcCCCHHH
Confidence 8321 1233333 34443 47899999999999999884 5788899884 78999999999999999999999999999
Q ss_pred HHHHHHHHhcchhcccCCccCcccHHHHHHHHH
Q 018120 317 CCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQ 349 (360)
Q Consensus 317 a~~~a~~aaa~~v~~~G~~~~~~~~~~~~~~~~ 349 (360)
|+++|+++|+.+|++.|+.. ++.+++.+.++
T Consensus 285 al~~A~~~aa~~~~~~G~~~--~~~~~~~~~~~ 315 (315)
T TIGR02198 285 ACRLANAAAGVVVGKLGTAT--VSPAELANALQ 315 (315)
T ss_pred HHHHHHHHhhhhhccCCCCC--CCHHHHHHHhC
Confidence 99999999999999999873 57778776653
No 34
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-40 Score=291.00 Aligned_cols=307 Identities=23% Similarity=0.316 Sum_probs=244.3
Q ss_pred ccccCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHH
Q 018120 10 REASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGL 89 (360)
Q Consensus 10 ~~~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~l 89 (360)
..-+.++.|+|+| +.++|++..+. +.|.+. + . .+...+.+.+||+++|+|+++
T Consensus 4 ~~~~~~~~vv~fG-s~~~D~V~~~~-----~~p~~g-e----------~----------~~~~~f~~~~GG~~aN~Avaa 56 (330)
T KOG2855|consen 4 AVYGEPPLVVVFG-SMLIDFVPSTR-----RLPNAG-E----------T----------WEPPGFKTAPGGKGANQAVAA 56 (330)
T ss_pred ccccCCceEEEec-cceeeeeeccc-----cCCCcc-c----------c----------ccCCcceecCCCcchhhhhHH
Confidence 3445678999999 99999999984 565321 1 0 112358899999999999999
Q ss_pred HhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccccccCCCcc--cCCcc
Q 018120 90 SVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQAD--ELIAE 166 (360)
Q Consensus 90 a~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~--~~~~~ 166 (360)
+| ||.++.|+|.||+|.||+.+.+.|++.+|+++++...++ +|+...+.+..+|++.+..+.+++....++ ++..+
T Consensus 57 ar-LG~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~ 135 (330)
T KOG2855|consen 57 AR-LGGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLE 135 (330)
T ss_pred Hh-cCcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHH
Confidence 99 999999999999999999999999999999999998877 699999999999999988888887665554 55567
Q ss_pred ccCCCcEEEEeeccc-C-H--HHHHHHHHHHHHCCCeEEEeCCChhHH----HhhhHHHHHhhccCCccEEEcCHHHHHH
Q 018120 167 DVKGSKWLVLRFGMF-N-F--EVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAE 238 (360)
Q Consensus 167 ~~~~~~~v~~~~~~~-~-~--~~~~~~~~~a~~~~~~v~~d~~~~~~~----~~~~~~l~~~l~~~~~dil~~n~~E~~~ 238 (360)
.++.+.++++..... . + ......++.+++.+..+++||..+... ..-+..+..+.. .+|++..+.+|...
T Consensus 136 ~i~~ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~--~adv~~~s~~e~~f 213 (330)
T KOG2855|consen 136 VIKEAKVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWN--MADVIKVSSQELAF 213 (330)
T ss_pred HHhhccEEEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhh--hhhcccccHHHHHH
Confidence 899999999993222 1 1 122222446777777777788643211 111122344444 78888888888888
Q ss_pred hhcCCCCCcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEE-EeCCcCCCcccCCCCccHHhHHHHHHHHHcC--CC--
Q 018120 239 LVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIV-KVPAIGEAKAIDATGAGDLFASGFLYGLVKG--LS-- 313 (360)
Q Consensus 239 l~~~~~~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~-~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~--~~-- 313 (360)
++|.. +.+. .+++..+.+.||||+|++|+.+|+++..- ++|++ .+++||||||||+|+|||+.+|.+| .+
T Consensus 214 l~~~~---~~~~-~~L~~~~~k~viVTlG~kG~~y~tk~~~~~~v~~~-~V~~VDtTGAGDsFvgal~~~L~~~~~~~~~ 288 (330)
T KOG2855|consen 214 LTGIE---DDKI-LKLWHMKLKLVIVTLGEKGCRYYTKDFKGSHVPAF-KVKAVDTTGAGDSFVGALAVQLVRGSLLPEL 288 (330)
T ss_pred hccCc---cchH-HHHhccCCCEEEEEeCCCceEEEecCCCCCCCCCc-ccccccCCCchHHHHHHHHHHHhhccccchH
Confidence 87752 1122 47888888999999999999999987555 89999 5889999999999999999999998 66
Q ss_pred -HHHHHHHHHHHhcchhcccCCccCcccHHHHHHHHHHc
Q 018120 314 -LEECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQIR 351 (360)
Q Consensus 314 -l~~a~~~a~~aaa~~v~~~G~~~~~~~~~~~~~~~~~~ 351 (360)
+++++++|+++++..++..|+..+.|..+++++.++..
T Consensus 289 ~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~~~~~~~~ 327 (330)
T KOG2855|consen 289 SLEEALRFANACGAITVQRKGAIPSMPTEKEVQSLLKSS 327 (330)
T ss_pred HHHHHHHHHHHhhhHHhhccCCCccCccHHHHHHHhhhc
Confidence 99999999999999999999999999999999888754
No 35
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=2.8e-39 Score=297.65 Aligned_cols=288 Identities=16% Similarity=0.137 Sum_probs=226.9
Q ss_pred EEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCce
Q 018120 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (360)
Q Consensus 18 i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v 97 (360)
|+.+..||++|+++.++ +++ .|+... ..+..+++||++.|+|.+|++ ||.++
T Consensus 5 ~~~~~~~p~~D~~~~~~-----~~~--~~~~~~--------------------~~~~~~~~GG~~~Nva~~la~-lG~~~ 56 (312)
T PRK09513 5 VATITLNPAYDLVGFCP-----EIE--RGEVNL--------------------VKTTGLHAAGKGINVAKVLKD-LGIDV 56 (312)
T ss_pred EEEEecChHHeEEEEcC-----cee--cCCeee--------------------ecceeecCCchHHHHHHHHHH-cCCCe
Confidence 55555599999999996 453 233222 236789999999999999999 99999
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCC------ccccCCC
Q 018120 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVKGS 171 (360)
Q Consensus 98 ~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~------~~~~~~~ 171 (360)
.++|.||+|.+|+. .+.|++.||++.++.. +++|+.++++++.+|+++.+...+. .++..+.+ ...++++
T Consensus 57 ~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 132 (312)
T PRK09513 57 TVGGFLGKDNQDGF-QQLFSELGIANRFQVV-QGRTRINVKLTEKDGEVTDFNFSGF--EVTPADWERFVTDSLSWLGQF 132 (312)
T ss_pred EEEEEecCccHHHH-HHHHHHcCCCccEEEC-CCCCEEEEEEEeCCCcEEEEeCCCC--CCCHHHHHHHHHHHHhhcCCC
Confidence 99999999999987 5789999999877644 4578888888888888886554432 33333321 2347899
Q ss_pred cEEEEeecc---cCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC--C
Q 018120 172 KWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--A 246 (360)
Q Consensus 172 ~~v~~~~~~---~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~--~ 246 (360)
|++|+++.. .+.+.+.++++.++++|.++++|++.. .+++.+.. .+|++++|++|+..+++.... +
T Consensus 133 d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--------~~~~~~~~-~~~~l~~n~~E~~~l~g~~~~~~~ 203 (312)
T PRK09513 133 DMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSRE--------ALVAGLKA-APWLVKPNRRELEIWAGRKLPELK 203 (312)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECChH--------HHHHHhcc-CCeEEcCCHHHHHHHhCCCCCCHH
Confidence 999999322 235788899999999999999999742 23333332 789999999999999986421 1
Q ss_pred cHHHHHH-HHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHh
Q 018120 247 DSEAALE-FLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSG 325 (360)
Q Consensus 247 ~~~~~~~-~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aa 325 (360)
+..++.+ +...+++.||||+|++|++++++++.++++++ .++++||+||||+|+|||++++++|+++++|+++|+++|
T Consensus 204 ~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~-~~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~~~A~a~A 282 (312)
T PRK09513 204 DVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKPP-ACDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVS 282 (312)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCcEEEeCCceEEecCC-CccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2223444 44568899999999999999988877888887 478999999999999999999999999999999999999
Q ss_pred cchhcccCCccCcccHHHHHHHHH
Q 018120 326 GSVIRSLGGEVTPENWQWMRKQMQ 349 (360)
Q Consensus 326 a~~v~~~G~~~~~~~~~~~~~~~~ 349 (360)
+.++++.| ...++.+++++++.
T Consensus 283 a~~~~~~~--~~~~~~~e~~~~l~ 304 (312)
T PRK09513 283 ALAVSQSN--VGITDRPQLAAMMA 304 (312)
T ss_pred HHHhhCCC--CCCCCHHHHHHHHh
Confidence 99999986 46678889988875
No 36
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=1.2e-39 Score=299.63 Aligned_cols=286 Identities=19% Similarity=0.270 Sum_probs=222.6
Q ss_pred CeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCceEEEEee
Q 018120 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (360)
Q Consensus 24 ~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v~~ig~v 103 (360)
||.+|.++.++ +++ .+++. +..+...++||++.|+|++|++ ||.++.++|.+
T Consensus 7 ~p~~d~~~~~~-----~~~--~~~~~--------------------~~~~~~~~~GG~~~NvA~~la~-LG~~v~~i~~v 58 (309)
T TIGR01231 7 NPSVDISYPLT-----ALK--LDTVN--------------------RVQEVSKTAGGKGLNVTRVLAQ-VGDPVLASGFL 58 (309)
T ss_pred chHHeEEEEcC-----Cee--eCceE--------------------eeceeeecCCccHHHHHHHHHH-cCCCeEEEEEe
Confidence 89999999985 332 22222 2235789999999999999999 99999999999
Q ss_pred cCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCccc----C--CccccCCCcEEEEe
Q 018120 104 GDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE----L--IAEDVKGSKWLVLR 177 (360)
Q Consensus 104 G~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~----~--~~~~~~~~~~v~~~ 177 (360)
|+ ++|+++++.|++.||++.++... ..|+.++.++. +|+|+++...++. +..+. + ..+.++++|++|++
T Consensus 59 G~-~~G~~i~~~l~~~GV~~~~~~~~-~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (309)
T TIGR01231 59 GG-KLGEFIEKELDHSDIKHAFYKIS-GETRNCIAILH-EGQQTEILEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAIS 133 (309)
T ss_pred cC-hhHHHHHHHHHHcCCceeEEECC-CCCEEeEEEEe-CCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhccCCEEEEE
Confidence 97 59999999999999999988763 46777777775 6888887665543 22111 1 12347899999999
Q ss_pred ecc---cCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHHH--
Q 018120 178 FGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAAL-- 252 (360)
Q Consensus 178 ~~~---~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~-- 252 (360)
... .+.+.+..+++.++++|.++++|++... ...+.+.+. ++|++++|++|+..+++.....+.+++.
T Consensus 134 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~~~~--~~dil~~n~~E~~~l~g~~~~~~~~~~~~~ 206 (309)
T TIGR01231 134 GSLPKGLPQDYYAQIIERCQNKGVPVVLDCSGAT-----LQTVLENPA--KPTVIKPNIEELSQLLNQELTEDLESLKQA 206 (309)
T ss_pred CCCCCCcCHHHHHHHHHHHHhCCCeEEEECChHH-----HHHHHhccC--CCeEEcCCHHHHHHHhCCCCCCCHHHHHHH
Confidence 322 3467888999999999999999997532 122333445 7999999999999999854323333322
Q ss_pred --HHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhc
Q 018120 253 --EFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIR 330 (360)
Q Consensus 253 --~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~ 330 (360)
+++..+.+.|++|+|++|++++++++.+++|++ ..+++|||||||+|+|||++++++|+++++|+++|+++|+.+++
T Consensus 207 ~~~~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~-~v~vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~aa~~~~ 285 (309)
T TIGR01231 207 LSQPLFSGIEWIIVSLGAQGAFAKHGHTFYKVNIP-TISVVNPVGSGDSTVAGITSALLNHESDHDLLKKANTLGMLNAQ 285 (309)
T ss_pred HHHHHHcCCCEEEEccCCCceEEEeCCeeEEeeCC-ccCcCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 333457899999999999999998888888888 47899999999999999999999999999999999999999999
Q ss_pred ccCCc-cCcccHHHHHHHHHH
Q 018120 331 SLGGE-VTPENWQWMRKQMQI 350 (360)
Q Consensus 331 ~~G~~-~~~~~~~~~~~~~~~ 350 (360)
+.++. ...+.++++.+.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~i~~ 306 (309)
T TIGR01231 286 EAQTGHVNLNNYDDLFNQIEV 306 (309)
T ss_pred CcccCCCCHHHHHHHHhceEE
Confidence 87765 355566666666543
No 37
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.4e-39 Score=294.91 Aligned_cols=278 Identities=24% Similarity=0.355 Sum_probs=218.1
Q ss_pred EEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCce
Q 018120 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (360)
Q Consensus 18 i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v 97 (360)
|+++| ..++|+++.++ +.+.+.+ .. .......+||+++|+|.+|++ ||.++
T Consensus 2 v~~~G-~~~~D~~~~~~-----~~~~~~~-~~---------------------~~~~~~~~GG~~~Nva~~l~~-lG~~~ 52 (288)
T cd01941 2 IVVIG-AANIDLRGKVS-----GSLVPGT-SN---------------------PGHVKQSPGGVGRNIAENLAR-LGVSV 52 (288)
T ss_pred eEEEE-eEEEeeeeccc-----CccccCC-CC---------------------CeeEEEccCcHHHHHHHHHHH-hCCCc
Confidence 89999 99999999985 3332211 11 013578899999999999999 99999
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeec-ccccccCCCcccCC--ccccCCCcEE
Q 018120 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP-CLSNAVKIQADELI--AEDVKGSKWL 174 (360)
Q Consensus 98 ~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~-~~~~~~~~~~~~~~--~~~~~~~~~v 174 (360)
.++|.+|+|.+|+.+++.|++.||+++++...+.+|+.++++++.+|+|++.. .......++.+.++ ...+.+++++
T Consensus 53 ~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 132 (288)
T cd01941 53 ALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKPI 132 (288)
T ss_pred EEEEEEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999988754558999999999889988632 22222233332221 2457899999
Q ss_pred EEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCc--HHH-H
Q 018120 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENAD--SEA-A 251 (360)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~--~~~-~ 251 (360)
+++. ..++..+..+++.+++.+.++++|++... .+++ +.++++ ++|++++|++|+..+++....+. ... +
T Consensus 133 ~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~---~~~~-~~~~~~--~~dii~~n~~E~~~~~~~~~~~~~~~~~~~ 205 (288)
T cd01941 133 VVDA-NLPEEALEYLLALAAKHGVPVAFEPTSAP---KLKK-LFYLLH--AIDLLTPNRAELEALAGALIENNEDENKAA 205 (288)
T ss_pred EEeC-CCCHHHHHHHHHhhhhcCCcEEEEccchH---Hhcc-chhhcc--cceEEeCCHHHHHHHhCcccCCchhHHHHH
Confidence 9873 34677888999999999999999986431 1111 124666 89999999999999988643221 222 3
Q ss_pred HHHHHcCCCEEEEEeCCCceEEEEC---CEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcch
Q 018120 252 LEFLAKRCQWAVVTLGPNGCIAKHG---KEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSV 328 (360)
Q Consensus 252 ~~~l~~~~~~vivt~G~~G~~~~~~---~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~ 328 (360)
..++..+++.++||+|++|++++++ +..+++|++...+++||+||||+|.|||++++++|+++++|+++|+++|+.+
T Consensus 206 ~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g~~~~~al~~a~~~Aa~~ 285 (288)
T cd01941 206 KILLLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQAAAALT 285 (288)
T ss_pred HHHHHcCCcEEEEEeCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3445558899999999999999987 5678899833588999999999999999999999999999999999999999
Q ss_pred hcc
Q 018120 329 IRS 331 (360)
Q Consensus 329 v~~ 331 (360)
|+.
T Consensus 286 ~~~ 288 (288)
T cd01941 286 LES 288 (288)
T ss_pred hcC
Confidence 863
No 38
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=8.9e-40 Score=301.93 Aligned_cols=275 Identities=23% Similarity=0.254 Sum_probs=223.9
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhc-CC
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF-GV 95 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~l-G~ 95 (360)
+++++| ..++|++...+ .. .....+||+++|+|+++++ | |.
T Consensus 1 ~~~~~G-~~~~d~i~~~~-----~~-------------------------------~~~~~~GG~~~N~A~~~~~-l~g~ 42 (328)
T cd01943 1 DFTTLG-MFIIDEIEYPD-----SE-------------------------------PVTNVLGGAGTYAILGARL-FLPP 42 (328)
T ss_pred CccccC-cEEeeccccCC-----CC-------------------------------ccccccCCchhhHhhceee-ecCC
Confidence 589999 99999999874 11 3568899999999999988 8 54
Q ss_pred --ce--EEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEEcCCCceeeecccccccCCCcccCCccccCC
Q 018120 96 --PC--GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (360)
Q Consensus 96 --~v--~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 170 (360)
++ .+++.+|+| +|+.+++.|++.||++++ ...+. +|+.++++++++++|.+..+.+.+..++.++++...+..
T Consensus 43 ~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 120 (328)
T cd01943 43 PLSRSISWIVDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNSTPLIR 120 (328)
T ss_pred ccccceeeEEecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccccccccccccccccC
Confidence 77 889999999 999999999999999998 54444 799999988888999888777777788888887777889
Q ss_pred CcEEEEeeccc-CHHHHHHHHHHHHH------CCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCC
Q 018120 171 SKWLVLRFGMF-NFEVIQAAIRIAKQ------EGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE 243 (360)
Q Consensus 171 ~~~v~~~~~~~-~~~~~~~~~~~a~~------~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~ 243 (360)
++++|++.... ..+...++++.+++ .+.++++|++.......+.+.+.++++ ++|++++|++|+..+++..
T Consensus 121 a~~~hl~~~~~~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~--~~dil~~n~~Ea~~l~g~~ 198 (328)
T cd01943 121 SSCIHLICSPERCASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALP--RVDVFSPNLEEAARLLGLP 198 (328)
T ss_pred CCeEEEECCHHHHHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHhc--cCCEECCCHHHHHHHhCCC
Confidence 99999973221 12778888999988 889999999743111113455778888 8999999999999999864
Q ss_pred CCCc--HHH-H-----H---HHHHcCCCEEEEEeCCCceEEEE--CCEEEEeCCcCCC---cccCCCCccHHhHHHHHHH
Q 018120 244 ENAD--SEA-A-----L---EFLAKRCQWAVVTLGPNGCIAKH--GKEIVKVPAIGEA---KAIDATGAGDLFASGFLYG 307 (360)
Q Consensus 244 ~~~~--~~~-~-----~---~~l~~~~~~vivt~G~~G~~~~~--~~~~~~~~~~~~~---~vvdttGAGD~f~ag~~~~ 307 (360)
.... ... . . +....+.+.||||+|++|+++++ +++.+++|+++ + +++|||||||+|+|||+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~-v~~~~vvDttGAGDaF~agfl~~ 277 (328)
T cd01943 199 TSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYH-TKSTKVVDPTGGGNSFLGGFAAG 277 (328)
T ss_pred CCCccchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCceEecCCcc-CCCCcccCCCCchHHHHHHHHHH
Confidence 3211 111 1 1 11345788999999999999998 46688899884 5 8999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHhcchhcccCC
Q 018120 308 LVKGLSLEECCKVGSCSGGSVIRSLGG 334 (360)
Q Consensus 308 l~~~~~l~~a~~~a~~aaa~~v~~~G~ 334 (360)
+++|+++++|+++|+++|+.++++.|.
T Consensus 278 l~~g~~~~~al~~a~a~Aa~~v~~~G~ 304 (328)
T cd01943 278 LALTKSIDEACIYGSVAASFAIEQVGL 304 (328)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999994
No 39
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=5.3e-39 Score=294.79 Aligned_cols=283 Identities=24% Similarity=0.297 Sum_probs=226.5
Q ss_pred CeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCceEEEEee
Q 018120 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (360)
Q Consensus 24 ~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v~~ig~v 103 (360)
|+.+|+++.++ ++ ..|+.. +.......+||++.|+|.++++ ||.++.++|.+
T Consensus 7 ~~~~D~~~~~~-----~~--~~~~~~--------------------~~~~~~~~~GG~~~N~a~~l~~-lg~~~~~i~~v 58 (303)
T TIGR03168 7 NPAIDLTIEVD-----GL--TPGEVN--------------------RVAAVRKDAGGKGINVARVLAR-LGAEVVATGFL 58 (303)
T ss_pred chHHeEEEEcC-----cc--ccCcee--------------------ecCcccccCCcchhhHHHHHHH-cCCCeEEEEEe
Confidence 78999999996 33 223222 2235779999999999999999 99999999999
Q ss_pred cCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCc------cccCCCcEEEEe
Q 018120 104 GDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSKWLVLR 177 (360)
Q Consensus 104 G~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~ 177 (360)
|+| +|+.+++.|++.||++.++... ..|+.++++.+++|+++.+...+ ..++.++++. +.+++++++|++
T Consensus 59 G~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 134 (303)
T TIGR03168 59 GGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESSGEETELNEPG--PEISEEELEQLLEKLRELLASGDIVVIS 134 (303)
T ss_pred CCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCCCCEEEEeCcC--CCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 998 7999999999999999988764 46778888888778777554433 2355554431 247899999998
Q ss_pred ec---ccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC--CcHHHHH
Q 018120 178 FG---MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--ADSEAAL 252 (360)
Q Consensus 178 ~~---~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~--~~~~~~~ 252 (360)
.. .++.+.+..+++.++++|.++++|++.. .+++.+.. ++|++++|+.|+..+++.... ++..++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~--------~~~~~~~~-~~dil~~n~~E~~~l~g~~~~~~~~~~~~~ 205 (303)
T TIGR03168 135 GSLPPGVPPDFYAQLIAIARKRGAKVILDTSGE--------ALREALAA-KPFLIKPNHEELEELFGRELKTEEEIIEAA 205 (303)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcH--------HHHHHHhc-CCcEECCCHHHHHHHhCCCCCCHHHHHHHH
Confidence 22 3467888999999999999999999752 23333322 799999999999999986422 2233444
Q ss_pred H-HHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 253 E-FLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 253 ~-~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
+ ++..+.+.+|||+|++|++++++++.+++|++ ..+++||+||||+|+|+|++++++|+++++|+++|+++|+.+|++
T Consensus 206 ~~l~~~g~~~vviT~g~~G~~~~~~~~~~~~~~~-~~~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~A~~~aa~~~~~ 284 (303)
T TIGR03168 206 RELLDRGAENVLVSLGADGALLVTKEGALKATPP-KVEVVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAGSAAAFS 284 (303)
T ss_pred HHHHHcCCCEEEEeecCCCcEEEeCCceEEeeCC-cceeecCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 4 44557889999999999999999988999988 478999999999999999999999999999999999999999999
Q ss_pred cCCccCcccHHHHHHHHHH
Q 018120 332 LGGEVTPENWQWMRKQMQI 350 (360)
Q Consensus 332 ~G~~~~~~~~~~~~~~~~~ 350 (360)
.|+. .++.+++++++.+
T Consensus 285 ~G~~--~~~~~~~~~~~~~ 301 (303)
T TIGR03168 285 PGTG--LPDPEDVEELLDQ 301 (303)
T ss_pred CCcC--CCCHHHHHHHHhh
Confidence 9985 5788888887764
No 40
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=3.6e-39 Score=289.33 Aligned_cols=256 Identities=21% Similarity=0.292 Sum_probs=207.6
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| .+++|++.+.+ +.++||++.|+|.+|++ ||.+
T Consensus 2 ~v~~iG-~~~~D~~~~~~----------------------------------------~~~~GG~~~NvA~~l~~-lG~~ 39 (260)
T PRK09813 2 KLATIG-DNCVDIYPQLG----------------------------------------KAFSGGNAVNVAVYCTR-YGIQ 39 (260)
T ss_pred eEEEec-cceeeecccCC----------------------------------------ccccCccHHHHHHHHHH-cCCc
Confidence 699999 99999987642 25799999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeeccc-ccccCCCcccCCccccCCCcEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-SNAVKIQADELIAEDVKGSKWLV 175 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 175 (360)
+.++|.||+|.+|+.+++.|++.||+++++...+++|+.+++.++ +++|++..+. +....+..++.+.+.+.++++++
T Consensus 40 ~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 118 (260)
T PRK09813 40 PGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYAWLAQYDIVH 118 (260)
T ss_pred ceEEEEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEe-CCcEEeeccCCCcccccccCHHHHHHHHhCCEEE
Confidence 999999999999999999999999999999887778888888775 6888876543 33333333333335578899999
Q ss_pred EeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHHHH-H
Q 018120 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALE-F 254 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~-~ 254 (360)
++.. ....++++.++++++++++|++.... .+.+.++++ ++|++++|+++.. .+.+++.+ +
T Consensus 119 ~~~~----~~~~~~~~~~~~~~~~v~~D~~~~~~----~~~~~~~~~--~~d~~~~~~~~~~--------~~~~~~~~~~ 180 (260)
T PRK09813 119 AAIW----GHAEDAFPQLHAAGKLTAFDFSDKWD----SPLWQTLVP--HLDYAFASAPQED--------EFLRLKMKAI 180 (260)
T ss_pred Eecc----chHHHHHHHHHHcCCeEEEEcCCCcc----HHHHHHhCC--ceeEEEecCCcch--------HHHHHHHHHH
Confidence 9721 12356778888999999999975421 133456777 8999998865311 13334444 4
Q ss_pred HHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhcccCC
Q 018120 255 LAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRSLGG 334 (360)
Q Consensus 255 l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~~~G~ 334 (360)
++.+.+.+|||+|++|++++++++.+++|+++ .+++|||||||+|+|||++++++|+++++|+++|+++|+.++++.|+
T Consensus 181 ~~~g~~~viit~G~~Ga~~~~~~~~~~~~~~~-~~~vDttGAGDaF~ag~i~~~~~g~~~~~al~~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 181 VARGAGVVIVTLGENGSIAWDGAQFWRQAPEP-VTVVDTMGAGDSFIAGFLCGWLAGMTLPQAMAQGTACAAKTIQYHGA 259 (260)
T ss_pred HHcCCCEEEEEECCCceEEEECCEEEecCCcc-cCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Confidence 46688999999999999999999999999995 78999999999999999999999999999999999999999999885
No 41
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-38 Score=279.56 Aligned_cols=290 Identities=26% Similarity=0.352 Sum_probs=239.3
Q ss_pred EEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCce
Q 018120 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (360)
Q Consensus 18 i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v 97 (360)
|+.+-.||.||+++.++ .+ ..| .+++.......+||++.|||..|+. ||.++
T Consensus 2 I~TvTLNPaiD~~~~l~-----~l--~~g--------------------~vNr~~~~~~~aGGKGINVa~vL~~-lG~~~ 53 (310)
T COG1105 2 IYTVTLNPALDYTVFLD-----EL--ELG--------------------EVNRVRAVTKTAGGKGINVARVLKD-LGIPV 53 (310)
T ss_pred eEEEecChhHhheeecc-----cc--ccc--------------------ceeeeccceecCCCCceeHHHHHHH-cCCCc
Confidence 44444589999999985 33 122 2355567899999999999999999 99999
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcC-CCceeeecccccccCCCcccCCc------cccCC
Q 018120 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRPCLSNAVKIQADELIA------EDVKG 170 (360)
Q Consensus 98 ~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~-~g~r~~~~~~~~~~~~~~~~~~~------~~~~~ 170 (360)
+.+|.+|.+ .|+.+.+.|++.||...++.. +++|+.++.+.+. +++.+-+.. ....++.+++.. ..+.+
T Consensus 54 ~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v-~g~TRinvki~~~~~~~~Tein~--~Gp~is~~~~~~~l~~~~~~l~~ 129 (310)
T COG1105 54 TALGFLGGF-TGEFFVALLKDEGIPDAFVEV-KGDTRINVKILDEEDGEETEINF--PGPEISEAELEQFLEQLKALLES 129 (310)
T ss_pred eEEEecCCc-cHHHHHHHHHhcCCCceEEEc-cCCCeeeEEEEecCCCcEEEecC--CCCCCCHHHHHHHHHHHHHhccc
Confidence 999999996 899999999999999998877 6789999999986 444554433 345666665542 34789
Q ss_pred CcEEEEee---cccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCC-
Q 018120 171 SKWLVLRF---GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA- 246 (360)
Q Consensus 171 ~~~v~~~~---~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~- 246 (360)
.|+|++++ ..++++.+.++++.++++|.++++|.+. +.|.+.+++ .+++++||.+|++++++.+..+
T Consensus 130 ~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg--------~~L~~~L~~-~P~lIKPN~~EL~~~~g~~~~~~ 200 (310)
T COG1105 130 DDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG--------EALLAALEA-KPWLIKPNREELEALFGRELTTL 200 (310)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh--------HHHHHHHcc-CCcEEecCHHHHHHHhCCCCCCh
Confidence 99999993 3457899999999999999999999985 667777776 6999999999999999987432
Q ss_pred -c-HHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 018120 247 -D-SEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCS 324 (360)
Q Consensus 247 -~-~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~a 324 (360)
+ .+.+.+++.++++.|||++|++|+++++++..|++.++ ..++++|+||||++.|||++++.+++++++++++|+++
T Consensus 201 ~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p-~~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~avA~ 279 (310)
T COG1105 201 EDVIKAARELLAEGIENVIVSLGADGALLVTAEGVYFASPP-KVQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAVAC 279 (310)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCeEEEeCC-CcceecCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 34556667889999999999999999999999999987 49999999999999999999999999999999999999
Q ss_pred hcchhcccCCc-cCcccHHHHHHHHH
Q 018120 325 GGSVIRSLGGE-VTPENWQWMRKQMQ 349 (360)
Q Consensus 325 aa~~v~~~G~~-~~~~~~~~~~~~~~ 349 (360)
|+..+.+.+.. .++..++++.+.++
T Consensus 280 g~a~~~~~~~~~~~~~~~~~~~~~v~ 305 (310)
T COG1105 280 GAAAASQKGTGIPDLDQLKKIYAQVT 305 (310)
T ss_pred HHHHhhcCCCCCCCHHHHHHHhhheE
Confidence 99999998754 34445555555544
No 42
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=4.9e-38 Score=286.42 Aligned_cols=272 Identities=25% Similarity=0.333 Sum_probs=216.1
Q ss_pred EEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCceE
Q 018120 19 LGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG 98 (360)
Q Consensus 19 ~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v~ 98 (360)
.++| ++++|+++.++ +++ .++.. +..+....+||++.|+|.+|++ ||.++.
T Consensus 4 ~~~~-~~~~D~~~~~~-----~~~--~~~~~--------------------~~~~~~~~~GG~~~Nva~~la~-lG~~v~ 54 (289)
T cd01164 4 TVTL-NPAIDLTIELD-----QLQ--PGEVN--------------------RVSSTRKDAGGKGINVARVLKD-LGVEVT 54 (289)
T ss_pred EEec-ChHHeEEEEcC-----ccc--CCcee--------------------ecccccccCCcchhHHHHHHHH-cCCCeE
Confidence 4678 99999999996 442 22211 1235778999999999999999 999999
Q ss_pred EEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCc------cccCCCc
Q 018120 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSK 172 (360)
Q Consensus 99 ~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~ 172 (360)
++|.||+| +|+.+++.|++.||++.++... .+|+.++++.+.+++++.+...+ ..++.++++. +.+++++
T Consensus 55 ~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 130 (289)
T cd01164 55 ALGFLGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEEDGTETEINEPG--PEISEEELEALLEKLKALLKKGD 130 (289)
T ss_pred EEEEccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCC--CCCCHHHHHHHHHHHHHhcCCCC
Confidence 99999998 8999999999999999988774 56788888887667766654433 2344443321 2357899
Q ss_pred EEEEeecc---cCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhh-ccCCccEEEcCHHHHHHhhcCCC--CC
Q 018120 173 WLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLL-ESGDVDLCFANEDEAAELVRGEE--NA 246 (360)
Q Consensus 173 ~v~~~~~~---~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l-~~~~~dil~~n~~E~~~l~~~~~--~~ 246 (360)
++|++... .+.+....+++.+++.+.++++|++.. . +++.+ + .+|++++|++|+..+++... .+
T Consensus 131 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~----~----~~~~~~~--~~dil~~n~~E~~~l~~~~~~~~~ 200 (289)
T cd01164 131 IVVLSGSLPPGVPADFYAELVRLAREKGARVILDTSGE----A----LLAALAA--KPFLIKPNREELEELFGRPLGDEE 200 (289)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEEECChH----H----HHHHHhc--CCcEECCCHHHHHHHhCCCCCCHH
Confidence 99998321 234788899999999999999999742 1 22333 4 89999999999999998542 12
Q ss_pred cHHHHH-HHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHh
Q 018120 247 DSEAAL-EFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSG 325 (360)
Q Consensus 247 ~~~~~~-~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aa 325 (360)
+..++. .+.+.+++.++||+|++|++++.+++.++++++ ..+++||+||||+|+|||++++++|+++++|+++|+++|
T Consensus 201 ~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~-~~~vvDttGAGDaf~a~~i~~l~~g~~~~~a~~~A~~~A 279 (289)
T cd01164 201 DVIAAARKLIERGAENVLVSLGADGALLVTKDGVYRASPP-KVKVVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAVAAG 279 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCEEEcCCcEEEecCC-CccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333443 355667889999999999999988888888888 488999999999999999999999999999999999999
Q ss_pred cchhcccCC
Q 018120 326 GSVIRSLGG 334 (360)
Q Consensus 326 a~~v~~~G~ 334 (360)
+.+|++.|+
T Consensus 280 a~~~~~~G~ 288 (289)
T cd01164 280 SATAFSPGT 288 (289)
T ss_pred HHHhcCccC
Confidence 999999885
No 43
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=6.9e-38 Score=304.02 Aligned_cols=297 Identities=19% Similarity=0.236 Sum_probs=224.1
Q ss_pred CCCeEEEecCCeeEEEEeecCHhHHhhCCC-CCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhh
Q 018120 14 QAALILGLQPAALIDHVARVDWSLLDQIPG-ERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (360)
Q Consensus 14 ~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~ 92 (360)
...+|+|+| +.++|+++.++- .+++- .+. +..........+|| ++|+|.+|++
T Consensus 9 ~~~~ilviG-~~~lD~~~~~~~---~~~~~~~~~--------------------~~~~~~~~~~~~GG-a~NvA~~la~- 62 (473)
T PRK11316 9 ERAGVLVVG-DVMLDRYWYGPT---SRISPEAPV--------------------PVVKVNQIEERPGG-AANVAMNIAS- 62 (473)
T ss_pred CCCcEEEEC-ccEEeeeeeccc---ceeCCCCCC--------------------CEEEeeeEEecCcH-HHHHHHHHHH-
Confidence 556799999 999999998631 12210 000 01112357788999 6999999999
Q ss_pred cCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCC---ccccC
Q 018120 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI---AEDVK 169 (360)
Q Consensus 93 lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~---~~~~~ 169 (360)
||.++.++|.+|+|.+|+++++.|++.||+++++...+.+|+.++++++.+++.............+.+.+. ...++
T Consensus 63 LG~~v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 142 (473)
T PRK11316 63 LGAQARLVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALP 142 (473)
T ss_pred cCCcEEEEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998877555799998888754442221111111122233221 24478
Q ss_pred CCcEEEEe-ecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC-Cc
Q 018120 170 GSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN-AD 247 (360)
Q Consensus 170 ~~~~v~~~-~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~-~~ 247 (360)
++++++++ +.....+.+..+++.++++|.++++||.... + ..++ .+|++++|++|++.+++.... ++
T Consensus 143 ~~~~v~is~~~~~~~~~~~~~~~~~k~~g~~vv~Dp~~~~--------~-~~~~--~~dil~pN~~Ea~~l~g~~~~~~~ 211 (473)
T PRK11316 143 SIGALVLSDYAKGALASVQAMIQLARKAGVPVLIDPKGTD--------F-ERYR--GATLLTPNLSEFEAVVGKCKDEAE 211 (473)
T ss_pred cCCEEEEecCCccchhHHHHHHHHHHhcCCeEEEeCCCCC--------c-cccC--CCeEECcCHHHHHHHhCCCCCHHH
Confidence 99999997 3221235678899999999999999997421 1 2344 799999999999999985311 11
Q ss_pred H-HHHHHHHH-cCCCEEEEEeCCCceEEEECCE-EEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 018120 248 S-EAALEFLA-KRCQWAVVTLGPNGCIAKHGKE-IVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCS 324 (360)
Q Consensus 248 ~-~~~~~~l~-~~~~~vivt~G~~G~~~~~~~~-~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~a 324 (360)
. +.+.+++. .+.+.++||+|++|++++++++ .+++|++ ..+++||+||||+|+|||++++++|+++++|+++|+++
T Consensus 212 ~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~-~v~vvDttGAGDaF~aa~~~~l~~g~~~~~al~~A~a~ 290 (473)
T PRK11316 212 LVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKAPLHLPTQ-AREVYDVTGAGDTVISVLAAALAAGNSLEEACALANAA 290 (473)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCceEEecCc-CCCCCCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 23445553 4789999999999999988766 5888888 48899999999999999999999999999999999999
Q ss_pred hcchhcccCCccCcccHHHHHHHHHH
Q 018120 325 GGSVIRSLGGEVTPENWQWMRKQMQI 350 (360)
Q Consensus 325 aa~~v~~~G~~~~~~~~~~~~~~~~~ 350 (360)
|+.++++.|+.. ++.++++++++.
T Consensus 291 Aa~~v~~~G~~~--~~~~~l~~~l~~ 314 (473)
T PRK11316 291 AGVVVGKLGTST--VSPIELENALRG 314 (473)
T ss_pred HHhhcccCCCcc--CCHHHHHHHHhc
Confidence 999999999763 567888888874
No 44
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=3.9e-37 Score=282.93 Aligned_cols=274 Identities=19% Similarity=0.236 Sum_probs=218.4
Q ss_pred cccccCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHH
Q 018120 9 NREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRG 88 (360)
Q Consensus 9 ~~~~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~ 88 (360)
..+..+.|+|+++| +.++|++++++. .....+||+++|+|.+
T Consensus 5 ~~~~~~~~~vlvvG-~~~~D~i~~~g~-------------------------------------~~~~~~GG~a~N~A~a 46 (335)
T PLN02630 5 SKRPIPQRRVLIVG-NYCHDVLIQNGS-------------------------------------VTAESLGGAASFISNV 46 (335)
T ss_pred CCCCCCCCCEEEEe-eeeeeEEEeCCc-------------------------------------EEEEecCcHHHHHHHH
Confidence 44566779999999 999999988630 1347899999999999
Q ss_pred HHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcC-----CCceeeecccccccCCCcccC
Q 018120 89 LSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-----SGNRTMRPCLSNAVKIQADEL 163 (360)
Q Consensus 89 la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~-----~g~r~~~~~~~~~~~~~~~~~ 163 (360)
|++ ||.++.++|.||+|.. .+++...+...+.+|+.+++++++ +++|.++...+++..++++++
T Consensus 47 lar-LG~~~~lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di 115 (335)
T PLN02630 47 LDA-LSVECELVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDI 115 (335)
T ss_pred HHH-cCCceEEEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHC
Confidence 999 9999999999999942 367766554444479999998876 568888889999999999998
Q ss_pred CccccCCCcEEEEeecccCHHHHHHHHHHHHH-----CCCeEEEeCCChh-HHHhhh-HHHHHhhccCCccEEEcCHHHH
Q 018120 164 IAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQ-----EGLSVSMDLASFE-MVRNFR-TPLLQLLESGDVDLCFANEDEA 236 (360)
Q Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~-----~~~~v~~d~~~~~-~~~~~~-~~l~~~l~~~~~dil~~n~~E~ 236 (360)
+...+..++++++. ..++++....+++.++. +|..++||+.+.. ...++. ..+.++++ ++|++++|++|+
T Consensus 116 ~~~~~~~~~~~~l~-~ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~--~iDil~~ne~Ea 192 (335)
T PLN02630 116 PDMRYEFGMAVGVA-GEILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLP--RIGFLKASSEEA 192 (335)
T ss_pred CHHHhcccceeeec-CCCcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhhHHHHHHHHH--hCCEEEecHHHH
Confidence 76567788888886 33457889999999988 7999999997531 111111 23557777 899999999999
Q ss_pred HHhhcCCCCCcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHH
Q 018120 237 AELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEE 316 (360)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~ 316 (360)
..+ +.+.+. ....|+||+|++|++++++++.+++|+++ .+++|||||||+|+|||++++++|+++++
T Consensus 193 ~~l-------~~~~~~-----~~~~vvvt~G~~G~~~~~~~~~~~~~~~~-v~~vDttGAGDaF~agfi~~l~~g~~~~~ 259 (335)
T PLN02630 193 LFI-------DVEEVR-----QKCCVIVTNGKKGCRIYWKDGEMRVPPFP-AIQVDPTGAGDSFLGGFVAGLVQGLAVPD 259 (335)
T ss_pred hhc-------CHHHHc-----cCCEEEEEECCCceEEEECCeeEEeCCCC-CCCCCCCChHHHHHHHHHHHHHcCCCHHH
Confidence 876 222221 12489999999999999999899999984 78999999999999999999999999999
Q ss_pred HHHHHHHHhcchhcccCCccCcccHHHHHHHHH
Q 018120 317 CCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQ 349 (360)
Q Consensus 317 a~~~a~~aaa~~v~~~G~~~~~~~~~~~~~~~~ 349 (360)
|+++|+++|+.++++.|.. ..+.+++++.++
T Consensus 260 a~~~A~a~aa~~v~~~G~~--~~~~~~l~~~~~ 290 (335)
T PLN02630 260 AALLGNYFGSLAVEQVGIP--KFDLRQLQRVKD 290 (335)
T ss_pred HHHHHHHHHHHHhCcCCCC--CCCHHHHHHHhh
Confidence 9999999999999999843 234455555544
No 45
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.8e-35 Score=264.48 Aligned_cols=252 Identities=19% Similarity=0.220 Sum_probs=195.6
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
+|+++| ++++|++...+ .....+||++.|+|.+|++ ||.+
T Consensus 1 ~il~iG-~~~iD~~~~~~--------------------------------------~~~~~~GG~~~Nva~~la~-lG~~ 40 (254)
T cd01937 1 KIVIIG-HVTIDEIVTNG--------------------------------------SGVVKPGGPATYASLTLSR-LGLT 40 (254)
T ss_pred CeEEEc-ceeEEEEecCC--------------------------------------ceEEecCchhhhHHHHHHH-hCCC
Confidence 589999 99999998742 2468899999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 176 (360)
+.++|.+|+|.+|+ ++.|++.||++..+ ....|+.+++.++.+|+|.+..+.++....... ...+.++|++|+
T Consensus 41 ~~~i~~vG~D~~g~--~~~l~~~gv~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 113 (254)
T cd01937 41 VKLVTKVGRDYPDK--WSDLFDNGIEVISL--LSTETTTFELNYTNEGRTRTLLAKCAAIPDTES---PLSTITAEIVIL 113 (254)
T ss_pred eEEEEeeCCCchHH--HHHHHHCCcEEEEe--cCCCeEEEEEEecCCCCeeeeeccccCCccccc---ccccCcccEEEE
Confidence 99999999999999 57899999997543 233567777777767788777665544332211 235788999999
Q ss_pred eecccCHHHHHHHHHHHHHCCCeEEEeCCChhH-HHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHHHHHH
Q 018120 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEM-VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFL 255 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~-~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l 255 (360)
+. ++++....+.+.+ .++++|++.... .......+.++++ ++|++++|++|+..+ .+.+++.+.+
T Consensus 114 ~~--~~~~~~~~~~~~~----~~v~~D~~~~~~~~~~~~~~~~~~l~--~~di~~~n~~E~~~~------~~~~~~~~~l 179 (254)
T cd01937 114 GP--VPEEISPSLFRKF----AFISLDAQGFLRRANQEKLIKCVILK--LHDVLKLSRVEAEVI------STPTELARLI 179 (254)
T ss_pred CC--CcchhcHHHHhhh----hheeEccccceeeccccchHHHhhcc--cCcEEEEcHHHHhhc------CCHHHHHHHH
Confidence 72 2445544444433 789999975311 0111112456777 899999999999873 1344444444
Q ss_pred -HcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhc
Q 018120 256 -AKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIR 330 (360)
Q Consensus 256 -~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~ 330 (360)
..+++.++||+|++|++++++++.+++++++ .+++|||||||+|+|||++++.+|+++++|+++|+++|+.+|+
T Consensus 180 ~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~-~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 180 KETGVKEIIVTDGEEGGYIFDGNGKYTIPASK-KDVVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAAAAKFIE 254 (254)
T ss_pred HHcCCCEEEEeeCCcceEEEECCccEEccccC-ceeccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 5578999999999999999999888999884 7899999999999999999999999999999999999999874
No 46
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=5.1e-35 Score=264.93 Aligned_cols=248 Identities=23% Similarity=0.248 Sum_probs=189.4
Q ss_pred ceEecCchHHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC-CCeeEEEEE--cCCCceeeec
Q 018120 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLV--DASGNRTMRP 150 (360)
Q Consensus 74 ~~~~~GG~a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~-~t~~~~~~~--~~~g~r~~~~ 150 (360)
....+||++.|+|.+|++ || ++.++|.||+| +|+.+++.|++.||+++++...+. +|....... +.++++++..
T Consensus 20 ~~~~~GG~a~N~a~~la~-lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~ 96 (277)
T cd01946 20 VDKALGGSATYFSLSASY-FT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDT 96 (277)
T ss_pred eeeccCchHHHHHHHHHH-hc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhh
Confidence 346799999999999999 98 69999999999 899999999999999999987554 452211111 1123333332
Q ss_pred ccccccCCCcccCCccccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEE
Q 018120 151 CLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (360)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~ 230 (360)
..+....+.+. + .+.+.+++++|++. ++++...++++.+++. .++++|+...+. ....+.+.++++ ++|+++
T Consensus 97 ~~~~~~~~~~~-~-~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~-~~v~~D~~~~~~-~~~~~~~~~~l~--~~d~~~ 168 (277)
T cd01946 97 DLNVFADFDPQ-L-PEHYKDSEFVFLGN--IAPELQREVLEQVKDP-KLVVMDTMNFWI-SIKPEKLKKVLA--KVDVVI 168 (277)
T ss_pred hhhHHhhcCCC-C-hHHhhcCCEEEECC--CCHHHHHHHHHHHHhC-CEEEEccHHHhh-hhhHHHHHHHhc--cCCEEe
Confidence 22221222221 1 24578899999972 4678888899988877 889999843221 112355777888 899999
Q ss_pred cCHHHHHHhhcCCCCCcHHHHHH-HHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHH
Q 018120 231 ANEDEAAELVRGEENADSEAALE-FLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLV 309 (360)
Q Consensus 231 ~n~~E~~~l~~~~~~~~~~~~~~-~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~ 309 (360)
+|++|+..+++. ++..++.+ +...+++.|++|+|.+|++++++++.+++|+++..+++|||||||+|.|||++++.
T Consensus 169 ~n~~E~~~l~g~---~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~ 245 (277)
T cd01946 169 INDGEARQLTGA---ANLVKAARLILAMGPKALIIKRGEYGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLA 245 (277)
T ss_pred CCHHHHHHHhCC---chHHHHHHHHHHcCCCEEEEecCCCcEEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHH
Confidence 999999999874 24544444 55568899999999999999998888899988533589999999999999999999
Q ss_pred cCC-----CHHHHHHHHHHHhcchhcccCCc
Q 018120 310 KGL-----SLEECCKVGSCSGGSVIRSLGGE 335 (360)
Q Consensus 310 ~~~-----~l~~a~~~a~~aaa~~v~~~G~~ 335 (360)
+++ ++++|+++|+++|+.+|++.|+.
T Consensus 246 ~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~~ 276 (277)
T cd01946 246 SQKDTSEANMRRAIIYGSAMASFCVEDFGTK 276 (277)
T ss_pred hCCCcchhhHHHHHHHhHHHHhhhhhhcCCC
Confidence 874 69999999999999999999864
No 47
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-33 Score=231.28 Aligned_cols=280 Identities=23% Similarity=0.330 Sum_probs=225.4
Q ss_pred CCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhc
Q 018120 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (360)
Q Consensus 14 ~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~l 93 (360)
++..|+|+| .+.||+|..++ .++.++...... +...+-||.+.|++.+|.. |
T Consensus 3 ~~k~VLcVG-~~~lD~iTivd-----~~~fe~~~~r~~---------------------~g~wqRgG~asNvcTvlrl-L 54 (308)
T KOG2947|consen 3 EPKQVLCVG-CTVLDVITIVD-----KYPFEDSEIRCL---------------------SGRWQRGGNASNVCTVLRL-L 54 (308)
T ss_pred CcceEEEec-cEEEEEEEecc-----CCCCCccceehh---------------------hhhhhcCCCcchHHHHHHH-h
Confidence 346799999 99999999996 787666543332 3678899999999999998 9
Q ss_pred CCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEc-CCCceeeecccccccCCCcccCCccccCCCc
Q 018120 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD-ASGNRTMRPCLSNAVKIQADELIAEDVKGSK 172 (360)
Q Consensus 94 G~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (360)
|.++.|+|.+......+.+++.|++.|||++++...+...+...++++ ..|.|+++.+..+.+..+.+++..-.+.++.
T Consensus 55 G~~cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kvdl~qy~ 134 (308)
T KOG2947|consen 55 GAPCEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKVDLTQYG 134 (308)
T ss_pred CCchheeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhcccceee
Confidence 999999999999889999999999999999999887775444555554 5689999988888899999998877899999
Q ss_pred EEEEeecccCHHHH---HHHHHHHH----HCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC
Q 018120 173 WLVLRFGMFNFEVI---QAAIRIAK----QEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (360)
Q Consensus 173 ~v~~~~~~~~~~~~---~~~~~~a~----~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~ 245 (360)
|+|+.... +.+++ ..+.++-. +.++.+++|+. +.++.+.++.. .+|+++.+.+-+..+.-.
T Consensus 135 WihfE~Rn-p~etlkM~~~I~~~N~r~pe~qrI~vSvd~e------n~req~~~l~a--m~DyVf~sK~~a~~~gfk--- 202 (308)
T KOG2947|consen 135 WIHFEARN-PSETLKMLQRIDAHNTRQPEEQRIRVSVDVE------NPREQLFQLFA--MCDYVFVSKDVAKHLGFK--- 202 (308)
T ss_pred eEEEecCC-hHHHHHHHHHHHHhhcCCCccceEEEEEEec------CcHHHHHHHhh--cccEEEEEHHHHhhhccC---
Confidence 99998322 23332 23333222 14678999996 45788888988 999999999988887543
Q ss_pred CcHHHHHHHHH----cC-C-CEEEEEeCCCceEEE-ECCEEEEeCCcCCCcccCCCCccHHhHHHHHHH-HHcCCCHHHH
Q 018120 246 ADSEAALEFLA----KR-C-QWAVVTLGPNGCIAK-HGKEIVKVPAIGEAKAIDATGAGDLFASGFLYG-LVKGLSLEEC 317 (360)
Q Consensus 246 ~~~~~~~~~l~----~~-~-~~vivt~G~~G~~~~-~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~-l~~~~~l~~a 317 (360)
++.++.+-+. ++ . +.+|+.++.+|+-+. .+|+.+++++++..++||+.||||+|+|||||+ +.++.++.||
T Consensus 203 -s~rea~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l~eA 281 (308)
T KOG2947|consen 203 -SPREACEGLYGRVPKGKPKPVLICPWASEGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRSLAEA 281 (308)
T ss_pred -CHHHHHHHHHhhcccCCCCcEEEeccccccccccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhhHHHH
Confidence 4555544332 22 2 568899999998766 467789999998899999999999999999999 5779999999
Q ss_pred HHHHHHHhcchhcccCC
Q 018120 318 CKVGSCSGGSVIRSLGG 334 (360)
Q Consensus 318 ~~~a~~aaa~~v~~~G~ 334 (360)
+.||+++|+.++...|-
T Consensus 282 vdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 282 VDFGNRVASKKLGGQGF 298 (308)
T ss_pred HHHHHHhhhcccccccc
Confidence 99999999999998773
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.4e-32 Score=241.14 Aligned_cols=296 Identities=21% Similarity=0.275 Sum_probs=227.0
Q ss_pred cccCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHH
Q 018120 11 EASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLS 90 (360)
Q Consensus 11 ~~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la 90 (360)
+..+...|+++| ..++|.+..... ++ |+|| .+.|+.++.....++|| |+|||.+++
T Consensus 6 ~~f~~~kVLVvG-DvmLDrY~~G~~---~R----------ISPE---------APVPVv~v~~e~~rlGG-AaNVa~Nia 61 (467)
T COG2870 6 PNFKQAKVLVVG-DVMLDRYWYGKV---SR----------ISPE---------APVPVVKVEKEEERLGG-AANVAKNIA 61 (467)
T ss_pred hhhcCCcEEEEc-ceeeeeeccccc---cc----------cCCC---------CCCceEEeccccccccc-HHHHHHHHH
Confidence 456778899999 999999988641 11 2222 22344555668899999 999999999
Q ss_pred hhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCC-cccCC---cc
Q 018120 91 VGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQ-ADELI---AE 166 (360)
Q Consensus 91 ~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~-~~~~~---~~ 166 (360)
. ||.++.++|.+|+|+.|+.+.+.|...+++..++.....+|.....++..+ ++.+........... ...+- ..
T Consensus 62 s-LGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~n-QQllRvD~Ee~~~~~~~~~ll~~~~~ 139 (467)
T COG2870 62 S-LGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRN-QQLLRLDFEEKFPIEDENKLLEKIKN 139 (467)
T ss_pred H-cCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeeccc-ceEEEecccccCcchhHHHHHHHHHH
Confidence 9 999999999999999999999999999999877777667888888777643 334443332211111 11111 24
Q ss_pred ccCCCcEEEEe-ecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC
Q 018120 167 DVKGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (360)
Q Consensus 167 ~~~~~~~v~~~-~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~ 245 (360)
.++++|++++| |+---..-+..+++.||+.|++|.+||-+. ++.. +. .+..+.||..|+++..|....
T Consensus 140 ~l~~~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg~--------Df~~-Y~--GAtLiTPN~~E~~~~vg~~~~ 208 (467)
T COG2870 140 ALKSFDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKGK--------DFEK-YR--GATLITPNLKEFEEAVGKCKS 208 (467)
T ss_pred HhhcCCEEEEeccccccchhHHHHHHHHHHcCCcEEECCCCc--------chhh-hC--CCeecCCCHHHHHHHHccccc
Confidence 57999999999 643222238899999999999999999652 2222 22 899999999999999987643
Q ss_pred Cc-HHH-HHHHHHc-CCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHH
Q 018120 246 AD-SEA-ALEFLAK-RCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGS 322 (360)
Q Consensus 246 ~~-~~~-~~~~l~~-~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~ 322 (360)
+. ..+ .+++.+. ....++||++++|+.+++.++.+|+|+. ..++-|.|||||+.+|.|..+++.|.++++|+.+||
T Consensus 209 e~el~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~~~h~pt~-AkEVyDVTGAGDTVIa~la~~laaG~s~~eAc~lAN 287 (467)
T COG2870 209 EEELEERGQKLKEELDLSALLVTRSEKGMTLFQEGKPLHFPAR-AKEVYDVTGAGDTVIAVLAAALAAGASLEEACELAN 287 (467)
T ss_pred HHHHHHHHHHHHHhhCcceEEEEeccCCceeecCCcccccchh-heeeeeccCCCchHHHHHHHHHHcCCCHHHHHHHhh
Confidence 32 233 4445554 5688999999999999999988999999 689999999999999999999999999999999999
Q ss_pred HHhcchhcccCCccCcccHHHHHH
Q 018120 323 CSGGSVIRSLGGEVTPENWQWMRK 346 (360)
Q Consensus 323 ~aaa~~v~~~G~~~~~~~~~~~~~ 346 (360)
+||+.++.+.|+.. -+.+|+..
T Consensus 288 ~AagiVVgKlGTat--vs~~EL~n 309 (467)
T COG2870 288 AAAGIVVGKLGTAT--VSPEELEM 309 (467)
T ss_pred hhcceEEeecccee--ecHHHHHh
Confidence 99999999999752 23345544
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.96 E-value=5.1e-27 Score=201.45 Aligned_cols=192 Identities=32% Similarity=0.424 Sum_probs=151.4
Q ss_pred eEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCc
Q 018120 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (360)
Q Consensus 17 ~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~ 96 (360)
.|+++| ++.+|+++.++ +++.+.. . .+....+..+||++.|+|.+|++ ||.+
T Consensus 1 ~v~~iG-~~~~D~~~~~~-----~~~~~~~-~--------------------~~~~~~~~~~GG~~~n~a~~l~~-LG~~ 52 (196)
T cd00287 1 RVLVVG-SLLVDVILRVD-----ALPLPGG-L--------------------VRPGDTEERAGGGAANVAVALAR-LGVS 52 (196)
T ss_pred CEEEEc-cceEEEEEEec-----cCCCCCC-e--------------------EEeceeeecCCCcHHHHHHHHHH-CCCc
Confidence 489999 99999999995 4543321 1 12235789999999999999999 9999
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 176 (360)
+.++| +|++|+
T Consensus 53 ~~~~~---------------------------------------------------------------------~~~v~i 63 (196)
T cd00287 53 VTLVG---------------------------------------------------------------------ADAVVI 63 (196)
T ss_pred EEEEE---------------------------------------------------------------------ccEEEE
Confidence 99999 689999
Q ss_pred eecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCC--cH-HHHHH
Q 018120 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA--DS-EAALE 253 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~--~~-~~~~~ 253 (360)
++.....+.+.++++.+++.+.++++|++........ +.+.++++ ++|++++|.+|++.+++....+ +. +.+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~-~~~~~~~~--~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~ 140 (196)
T cd00287 64 SGLSPAPEAVLDALEEARRRGVPVVLDPGPRAVRLDG-EELEKLLP--GVDILTPNEEEAEALTGRRDLEVKEAAEAAAL 140 (196)
T ss_pred ecccCcHHHHHHHHHHHHHcCCeEEEeCCcccccccc-chHHHHHh--hCCEECCCHHHHHHHhCCCCCChHHHHHHHHH
Confidence 9432113788899999999999999999865322221 22566777 8999999999999999864321 12 33445
Q ss_pred HHHcCCCEEEEEeCCCceEEEE-CCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHH
Q 018120 254 FLAKRCQWAVVTLGPNGCIAKH-GKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLV 309 (360)
Q Consensus 254 ~l~~~~~~vivt~G~~G~~~~~-~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~ 309 (360)
++..+.+.+++|+|++|+++++ ++..+++|+++ .+++||+||||+|+|||+++++
T Consensus 141 l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~-~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 141 LLSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFP-VKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred HHhcCCCEEEEEECCCccEEEecCCceEEcCCcc-CCcccCCCchHHHHHHHHHHhC
Confidence 5666889999999999999998 77788898884 7899999999999999999873
No 50
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.75 E-value=3.2e-17 Score=146.54 Aligned_cols=161 Identities=22% Similarity=0.131 Sum_probs=116.7
Q ss_pred CCCcEEEEeec--ccCHHHHHHHHHHHHHC--CCeEEEeCCCh-----h-HHHhhhHHHHHhhccCCccEEEcCHHHHHH
Q 018120 169 KGSKWLVLRFG--MFNFEVIQAAIRIAKQE--GLSVSMDLASF-----E-MVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (360)
Q Consensus 169 ~~~~~v~~~~~--~~~~~~~~~~~~~a~~~--~~~v~~d~~~~-----~-~~~~~~~~l~~~l~~~~~dil~~n~~E~~~ 238 (360)
...+++.+++. ....+.+.++++.++++ +.++++||.-. + ..+...+.+.+++.. ++|++++|..|+..
T Consensus 71 ~~~~~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~-~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAVLTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVP-LADIITPNQFELEL 149 (254)
T ss_pred ccCCEEEEecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHh-cCCEECCcHHHHHH
Confidence 45677766632 22357788888888877 89999999421 1 112233455554442 79999999999999
Q ss_pred hhcCCCC--CcHHHH-HHHHHcCCCEEEEEeCCC------ceEEEECCEEEEeCCcCCCc-ccCCCCccHHhHHHHHHHH
Q 018120 239 LVRGEEN--ADSEAA-LEFLAKRCQWAVVTLGPN------GCIAKHGKEIVKVPAIGEAK-AIDATGAGDLFASGFLYGL 308 (360)
Q Consensus 239 l~~~~~~--~~~~~~-~~~l~~~~~~vivt~G~~------G~~~~~~~~~~~~~~~~~~~-vvdttGAGD~f~ag~~~~l 308 (360)
|++.+.. ++..++ .+++..+++.|+||.|.. |++++++++.++++.+ ..+ ++|++||||+|.|+|++++
T Consensus 150 l~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~GaGD~f~a~~~~~l 228 (254)
T cd01173 150 LTGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRP-KIPFPAYFNGTGDLFAALLLARL 228 (254)
T ss_pred HcCCCcCCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEee-ccCCCCCcCChHHHHHHHHHHHH
Confidence 9986422 233344 445566899999999985 7888877665444443 234 7999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHhcchhcc
Q 018120 309 VKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 309 ~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
++|+++++|+++|++....+++.
T Consensus 229 ~~g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 229 LKGKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776653
No 51
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.74 E-value=5.7e-17 Score=147.33 Aligned_cols=161 Identities=18% Similarity=0.131 Sum_probs=115.4
Q ss_pred cCCCcEEEEeecc--cCHHHHHHHHHHHHHCC--CeEEEeCC------ChhHHHhhhHHHH-HhhccCCccEEEcCHHHH
Q 018120 168 VKGSKWLVLRFGM--FNFEVIQAAIRIAKQEG--LSVSMDLA------SFEMVRNFRTPLL-QLLESGDVDLCFANEDEA 236 (360)
Q Consensus 168 ~~~~~~v~~~~~~--~~~~~~~~~~~~a~~~~--~~v~~d~~------~~~~~~~~~~~l~-~~l~~~~~dil~~n~~E~ 236 (360)
+.++|++++++.. ...+.+.++++.+++.+ ..+++||. ..+..+.+.+.+. ++++ ++|++++|..|+
T Consensus 72 ~~~~d~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~--~adii~pN~~Ea 149 (286)
T TIGR00687 72 LNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIP--VADIITPNQFEL 149 (286)
T ss_pred cccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccc--cccEecCCHHHH
Confidence 4578888766322 12467888888888765 67889993 1111123334443 4666 899999999999
Q ss_pred HHhhcCCCC--CcHHHH-HHHHHcCCCEEEEE-eCCCce--------EEEECCEEEEeCCcCCCc-ccCCCCccHHhHHH
Q 018120 237 AELVRGEEN--ADSEAA-LEFLAKRCQWAVVT-LGPNGC--------IAKHGKEIVKVPAIGEAK-AIDATGAGDLFASG 303 (360)
Q Consensus 237 ~~l~~~~~~--~~~~~~-~~~l~~~~~~vivt-~G~~G~--------~~~~~~~~~~~~~~~~~~-vvdttGAGD~f~ag 303 (360)
..|+|.+.. ++..++ ..++..+++.|+|| .|.+|+ +++++++.++++.++ .+ ++|++||||+|+|+
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~GaGD~f~A~ 228 (286)
T TIGR00687 150 ELLTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPL-AVFMRQPVGTGDLIAAL 228 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccC-cCCCCCCCChHHHHHHH
Confidence 999986422 223333 34556688999999 688775 445666666676653 45 68999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 304 FLYGLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 304 ~~~~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
|++++++|+++++|+++|+++...++..
T Consensus 229 ~l~~l~~g~~~~~al~~A~~~v~~~l~~ 256 (286)
T TIGR00687 229 LLATLLHGNSLKEALEKTVSAVYHVLVT 256 (286)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995555544
No 52
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.73 E-value=1.9e-16 Score=141.33 Aligned_cols=158 Identities=20% Similarity=0.163 Sum_probs=120.3
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCC-eEEEeCCChh------HHHhhhHHH-HHhhccCCccEEEcCHHHHHHhhc
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASFE------MVRNFRTPL-LQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~~~------~~~~~~~~l-~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
+.+.+.+++ ..+.+.+..+++.+++++. ++++||.... ......+.+ .++++ ++|++++|..|++.|++
T Consensus 67 ~~~aikiG~-l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~--~~dvitpN~~Ea~~L~g 143 (254)
T TIGR00097 67 PVDAAKTGM-LASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLP--LATLITPNLPEAEALLG 143 (254)
T ss_pred CCCEEEECC-cCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccc--cccEecCCHHHHHHHhC
Confidence 356777762 2367899999999999888 6999985311 111111223 34667 89999999999999998
Q ss_pred CCCC--CcHHHH-HHHHHcCCCEEEEEeCC----Cce-EEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCC
Q 018120 242 GEEN--ADSEAA-LEFLAKRCQWAVVTLGP----NGC-IAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLS 313 (360)
Q Consensus 242 ~~~~--~~~~~~-~~~l~~~~~~vivt~G~----~G~-~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~ 313 (360)
.... ++..++ ..+...+++.|+||.|. +|. +++++++.++++++ ..+++|++||||+|.|+|++++++|++
T Consensus 144 ~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~GaGD~f~aalaa~la~g~~ 222 (254)
T TIGR00097 144 TKIRTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAP-RIETKNTHGTGCTLSAAIAANLAKGLS 222 (254)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEec-ccCCCCCCChHHHHHHHHHHHHHCCCC
Confidence 5421 233344 44455688999999997 344 66777777788877 578899999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhcc
Q 018120 314 LEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 314 l~~a~~~a~~aaa~~v~~ 331 (360)
+++|+++|++++...+++
T Consensus 223 l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 223 LKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998876
No 53
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.73 E-value=2.3e-16 Score=141.82 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=119.4
Q ss_pred CcEEEEeecccCHHHHHHHHHHHHHCCCe-EEEeCCChh------HHHhhhHHH-HHhhccCCccEEEcCHHHHHHhhcC
Q 018120 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASFE------MVRNFRTPL-LQLLESGDVDLCFANEDEAAELVRG 242 (360)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~~------~~~~~~~~l-~~~l~~~~~dil~~n~~E~~~l~~~ 242 (360)
.|++.+++ ..+.+.+..+++.+++.+.+ +++||.... ......+.+ .++++ ++|++++|..|++.|++.
T Consensus 73 ~~~ikiG~-l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~--~advitpN~~Ea~~L~g~ 149 (268)
T PRK12412 73 VDALKTGM-LGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVP--KALVVTPNLFEAYQLSGV 149 (268)
T ss_pred CCEEEECC-CCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhc--cceEEcCCHHHHHHHhCc
Confidence 78888873 23678889999999888876 999996311 011111223 34667 899999999999999985
Q ss_pred CCC--CcHHHH-HHHHHcCCCEEEEEeCCCce------EEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCC
Q 018120 243 EEN--ADSEAA-LEFLAKRCQWAVVTLGPNGC------IAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLS 313 (360)
Q Consensus 243 ~~~--~~~~~~-~~~l~~~~~~vivt~G~~G~------~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~ 313 (360)
... ++..++ .+++..+++.|+||.|..|. +++.++..++++.+ ..+.+|++||||+|+|+|++++++|++
T Consensus 150 ~~~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~-~v~~~~t~GaGD~f~aa~aa~l~~g~~ 228 (268)
T PRK12412 150 KINSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESE-KIDTTNTHGAGCTYSAAITAELAKGKP 228 (268)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeC-ccCCCCCCchHHHHHHHHHHHHHCCCC
Confidence 421 233344 34555688999999998753 45556666677777 578899999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhcc
Q 018120 314 LEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 314 l~~a~~~a~~aaa~~v~~ 331 (360)
+++|+++|..+...+++.
T Consensus 229 l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 229 VKEAVKTAKEFITAAIRY 246 (268)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988876
No 54
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.73 E-value=3.4e-16 Score=138.84 Aligned_cols=157 Identities=22% Similarity=0.146 Sum_probs=118.5
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHC-CCeEEEeCCChhH------HHhhhHHH-HHhhccCCccEEEcCHHHHHHhhc
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASFEM------VRNFRTPL-LQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~~~------~~~~~~~l-~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
+.+++.+++. .+.+.+..+.+.+++. +.++++||..... ...+.+.+ ..+++ ++|++++|..|++.|++
T Consensus 68 ~~~~i~~G~l-~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~--~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKIGML-GSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLP--LATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhc--cCeEEeCCHHHHHHHhC
Confidence 5688888633 2588888888888886 8899999963210 11222233 33456 89999999999999998
Q ss_pred CCCCC--cHHHH-HHHHHcCCCEEEEEeCCCc-----eEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCC
Q 018120 242 GEENA--DSEAA-LEFLAKRCQWAVVTLGPNG-----CIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLS 313 (360)
Q Consensus 242 ~~~~~--~~~~~-~~~l~~~~~~vivt~G~~G-----~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~ 313 (360)
....+ +..++ ..+...+.+.|+||.|.+| .+++++++.++++.+ ..+++|++||||+|.|+|++++++|++
T Consensus 145 ~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~GaGD~f~a~l~a~l~~g~~ 223 (242)
T cd01169 145 LEIATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESP-RIDTKNTHGTGCTLSSAIAANLAKGLS 223 (242)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECCcEEEEecc-eeCCCCCCChHHHHHHHHHHHHHCCCC
Confidence 64221 22233 3445568899999999885 366777777888887 477899999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhc
Q 018120 314 LEECCKVGSCSGGSVIR 330 (360)
Q Consensus 314 l~~a~~~a~~aaa~~v~ 330 (360)
+++|+++|+..-...++
T Consensus 224 ~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 224 LEEAVREAKEYVTQAIR 240 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988776654
No 55
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.72 E-value=2.7e-16 Score=141.43 Aligned_cols=158 Identities=20% Similarity=0.174 Sum_probs=120.3
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCC-eEEEeCCChh------HHHhhhHHHH-HhhccCCccEEEcCHHHHHHhhc
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASFE------MVRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~~~------~~~~~~~~l~-~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
..+.+.+++. .+.+.+..+++.+++.+. ++++||.... ......+.+. ++++ ++|++++|..|++.|++
T Consensus 73 ~~~ai~iG~l-~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~--~~dvitpN~~Ea~~L~g 149 (266)
T PRK06427 73 RIDAVKIGML-ASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLP--LATLITPNLPEAEALTG 149 (266)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhC--cCeEEcCCHHHHHHHhC
Confidence 5678888743 367888888898888775 7999995211 1111223343 4677 89999999999999998
Q ss_pred CCCC--Cc-HHHHHH-HHHcCCCEEEEEeCC--Cce----EEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcC
Q 018120 242 GEEN--AD-SEAALE-FLAKRCQWAVVTLGP--NGC----IAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKG 311 (360)
Q Consensus 242 ~~~~--~~-~~~~~~-~l~~~~~~vivt~G~--~G~----~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~ 311 (360)
.+.. ++ ..++.+ +.+.+++.|+||.|. +|. +++++++.++++.+ ..+.+|++||||+|.|+|++++++|
T Consensus 150 ~~~~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~GaGD~f~a~l~~~l~~g 228 (266)
T PRK06427 150 LPIADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAP-RIPTKNTHGTGCTLSAAIAAELAKG 228 (266)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEee-eECCCCCCChHHHHHHHHHHHHHCC
Confidence 6421 12 334444 445588999999998 553 66777767777776 4678899999999999999999999
Q ss_pred CCHHHHHHHHHHHhcchhcc
Q 018120 312 LSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 312 ~~l~~a~~~a~~aaa~~v~~ 331 (360)
+++++|+++|+.++..++++
T Consensus 229 ~~l~~A~~~A~~~~~~~i~~ 248 (266)
T PRK06427 229 ASLLDAVQTAKDYVTRAIRH 248 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877
No 56
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.72 E-value=1.9e-16 Score=141.37 Aligned_cols=218 Identities=21% Similarity=0.233 Sum_probs=136.7
Q ss_pred eEEEEeecCChh-HHHHHHHHH---hCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCc
Q 018120 97 CGLIGAYGDDQQ-GQLFVSNMQ---FSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSK 172 (360)
Q Consensus 97 v~~ig~vG~D~~-g~~i~~~l~---~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (360)
..+++.-|.|+. |-=++..++ .+|+. ...+..++...+..|..... . ....+ .+.+ +.+...+
T Consensus 4 ~~vl~iag~d~~ggaG~~aD~~~~~~~~~~-------~~~~~t~~t~~~~~G~~v~~-~--~~~~l-~~~l--~~l~~~~ 70 (253)
T PRK12413 4 NYILAISGNDIFSGGGLHADLATYTRNGLH-------GFVAVTCLTAMTEKGFEVFP-V--DKEIF-QQQL--DSLKDVP 70 (253)
T ss_pred CeEEEEeeeCCCCHHHHHHHHHHHHHcCCc-------cCeeeEEEecccCCceEEEE-C--CHHHH-HHHH--HHhhCCC
Confidence 456788888874 444544444 23322 22344555555655642211 1 10011 0111 1122334
Q ss_pred EEEEeeccc-CHHHHHHHHHHHH-HCCCeEEEeCCChh------HHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCC
Q 018120 173 WLVLRFGMF-NFEVIQAAIRIAK-QEGLSVSMDLASFE------MVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE 244 (360)
Q Consensus 173 ~v~~~~~~~-~~~~~~~~~~~a~-~~~~~v~~d~~~~~------~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~ 244 (360)
+..+..+.+ +.+....+++.++ ..+.++++||.... ..+.+++.+.++++ ++|++++|++|++.|+|.+.
T Consensus 71 ~~~i~~G~l~~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~--~~dli~pN~~E~~~L~g~~~ 148 (253)
T PRK12413 71 FSAIKIGLLPNVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFP--YVTVITPNLVEAELLSGKEI 148 (253)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhc--cCcEECCCHHHHHHHhCcCC
Confidence 444432222 4566676777666 46889999986321 11234455556777 89999999999999999642
Q ss_pred C--CcHHHH-HHHHHcCCCEEEEEeCCCc-----e-EEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHH
Q 018120 245 N--ADSEAA-LEFLAKRCQWAVVTLGPNG-----C-IAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLE 315 (360)
Q Consensus 245 ~--~~~~~~-~~~l~~~~~~vivt~G~~G-----~-~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~ 315 (360)
. ++..++ ..+++.+++.|+||.|++| . ++++++ .+++++.+ ...+|++||||+|.|+|++++.+|++++
T Consensus 149 ~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~GaGDaf~a~~~~~l~~g~~l~ 226 (253)
T PRK12413 149 KTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGK-EFVILESP-VLEKNNIGAGCTFASSIASQLVKGKSPL 226 (253)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCC-EEEEEeec-ccCCCCCChHHHHHHHHHHHHHcCCCHH
Confidence 2 223344 4455568899999999864 2 344444 44555553 5678999999999999999999999999
Q ss_pred HHHHHHHHHhcchhcc
Q 018120 316 ECCKVGSCSGGSVIRS 331 (360)
Q Consensus 316 ~a~~~a~~aaa~~v~~ 331 (360)
+|+++|.++...++++
T Consensus 227 ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 227 EAVKNSKDFVYQAIQQ 242 (253)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998888766
No 57
>PRK05756 pyridoxamine kinase; Validated
Probab=99.72 E-value=1.4e-16 Score=144.77 Aligned_cols=161 Identities=19% Similarity=0.101 Sum_probs=117.8
Q ss_pred cCCCcEEEEeec--ccCHHHHHHHHHHHHHCC--CeEEEeCCChh------HHHhhhHHHH-HhhccCCccEEEcCHHHH
Q 018120 168 VKGSKWLVLRFG--MFNFEVIQAAIRIAKQEG--LSVSMDLASFE------MVRNFRTPLL-QLLESGDVDLCFANEDEA 236 (360)
Q Consensus 168 ~~~~~~v~~~~~--~~~~~~~~~~~~~a~~~~--~~v~~d~~~~~------~~~~~~~~l~-~~l~~~~~dil~~n~~E~ 236 (360)
+..+++++.++. ....+.+.++++.+++.+ ..+++||.-.. ..+...+.+. .+++ ++|++++|..|+
T Consensus 72 l~~~~~v~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~--~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAVLSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALP--AADIITPNLFEL 149 (286)
T ss_pred cccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcc--cccEecCCHHHH
Confidence 457787766632 122467788888887765 56889985211 1112222333 3677 899999999999
Q ss_pred HHhhcCCCC--CcHHHH-HHHHHcCCCEEEEEeCCC--------ceEEEECCEEEEeCCcCCCcc-cCCCCccHHhHHHH
Q 018120 237 AELVRGEEN--ADSEAA-LEFLAKRCQWAVVTLGPN--------GCIAKHGKEIVKVPAIGEAKA-IDATGAGDLFASGF 304 (360)
Q Consensus 237 ~~l~~~~~~--~~~~~~-~~~l~~~~~~vivt~G~~--------G~~~~~~~~~~~~~~~~~~~v-vdttGAGD~f~ag~ 304 (360)
+.|++.... ++..++ .+++..+++.|+||.|.. |++++++++.++++.+ ..++ +|++||||+|+|+|
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~v~~~GaGD~f~a~~ 228 (286)
T PRK05756 150 EWLSGRPVETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRP-LVDFMRQPVGVGDLTSALF 228 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecC-ccCCCCCCCChHHHHHHHH
Confidence 999986422 223333 345556889999999876 4777787777777766 4666 79999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 305 LYGLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 305 ~~~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
++++++|+++++|+++|++....+++.
T Consensus 229 ~a~l~~g~~~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 229 LARLLQGGSLEEALEHTTAAVYEVMAR 255 (286)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988876
No 58
>PRK07105 pyridoxamine kinase; Validated
Probab=99.72 E-value=9.3e-17 Score=145.75 Aligned_cols=158 Identities=19% Similarity=0.105 Sum_probs=114.6
Q ss_pred CCcEEEEeecccCHHHHHH---HHHHHHHCCCeEEEeCCChhH-------HHhhhHHHHHhhccCCccEEEcCHHHHHHh
Q 018120 170 GSKWLVLRFGMFNFEVIQA---AIRIAKQEGLSVSMDLASFEM-------VRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~---~~~~a~~~~~~v~~d~~~~~~-------~~~~~~~l~~~l~~~~~dil~~n~~E~~~l 239 (360)
.+|.+++++.. +.+.... +++.+++.+.++++||..... .+...+.+.++++ ++|++++|..|++.|
T Consensus 75 ~~~aik~G~l~-~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~--~advitpN~~Ea~~L 151 (284)
T PRK07105 75 KFDAIYSGYLG-SPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQ--KADVITPNLTEACLL 151 (284)
T ss_pred ccCEEEECcCC-CHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHh--hCCEecCCHHHHHHH
Confidence 57888887322 4444444 444446668899999973210 1233455667888 899999999999999
Q ss_pred hcCCCC------CcHHHHHH-HHHcCCCEEEEEe-----CCCceEEEECC--EEEEeCCcCCCcccCCCCccHHhHHHHH
Q 018120 240 VRGEEN------ADSEAALE-FLAKRCQWAVVTL-----GPNGCIAKHGK--EIVKVPAIGEAKAIDATGAGDLFASGFL 305 (360)
Q Consensus 240 ~~~~~~------~~~~~~~~-~l~~~~~~vivt~-----G~~G~~~~~~~--~~~~~~~~~~~~vvdttGAGD~f~ag~~ 305 (360)
+|.... ++..++.+ +...+++.|+||. |..|+++++++ ..++.+.+ .. .+|++||||+|.|+|+
T Consensus 152 ~g~~~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~-~~-~~~~~GaGD~f~aa~~ 229 (284)
T PRK07105 152 LDKPYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCK-YI-PAHYPGTGDIFTSVIT 229 (284)
T ss_pred cCCCcCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeec-cc-CCCcCChhHHHHHHHH
Confidence 985421 12333433 4455889999999 67788888653 34445544 33 3799999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHhcchhccc
Q 018120 306 YGLVKGLSLEECCKVGSCSGGSVIRSL 332 (360)
Q Consensus 306 ~~l~~~~~l~~a~~~a~~aaa~~v~~~ 332 (360)
+++++|+++++|+++|..++...+++.
T Consensus 230 ~~l~~g~~l~~av~~A~~~~~~~i~~~ 256 (284)
T PRK07105 230 GSLLQGDSLPIALDRAVQFIEKGIRAT 256 (284)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988864
No 59
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.70 E-value=1.3e-15 Score=137.79 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=112.2
Q ss_pred cCCCcEEEEeecccCHH---HHHHHHHHHHH--CCCeEEEeCCC------hhHHHhhhHHHH-HhhccCCccEEEcCHHH
Q 018120 168 VKGSKWLVLRFGMFNFE---VIQAAIRIAKQ--EGLSVSMDLAS------FEMVRNFRTPLL-QLLESGDVDLCFANEDE 235 (360)
Q Consensus 168 ~~~~~~v~~~~~~~~~~---~~~~~~~~a~~--~~~~v~~d~~~------~~~~~~~~~~l~-~~l~~~~~dil~~n~~E 235 (360)
+.++|.+++++.. +.+ .+.++++..+. .+.++++||.- .+..+...+.+. ++++ ++|+++||..|
T Consensus 86 l~~~d~i~~G~l~-s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~--~advitPN~~E 162 (281)
T PRK08176 86 LRQLRAVTTGYMG-SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLP--LAQGLTPNIFE 162 (281)
T ss_pred cccCCEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHh--hcCEeCCCHHH
Confidence 3578999998432 444 44444444433 47789999961 111122223343 4667 89999999999
Q ss_pred HHHhhcCCCC--CcHHHH-HHHHHcCCCEEEEEeCCCc-------eEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHH
Q 018120 236 AAELVRGEEN--ADSEAA-LEFLAKRCQWAVVTLGPNG-------CIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFL 305 (360)
Q Consensus 236 ~~~l~~~~~~--~~~~~~-~~~l~~~~~~vivt~G~~G-------~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~ 305 (360)
++.|+|.... ++..++ .++++.+++.|+||.|..| ++++++++.+.. ..+ ...+|++||||+|.|+|+
T Consensus 163 a~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~GaGD~faa~~~ 240 (281)
T PRK08176 163 LEILTGKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADSVNVI-SHP-RVDTDLKGTGDLFCAELV 240 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEEE-ecC-ccCCCCCChhHHHHHHHH
Confidence 9999986422 122233 4455568899999999988 566776664433 333 345799999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 306 YGLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 306 ~~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
+++++|+++++|+++|+..-..+++.
T Consensus 241 a~l~~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 241 SGLLKGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988777765
No 60
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.69 E-value=1.9e-15 Score=145.17 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=117.3
Q ss_pred cEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh------hHHHhhhHHH-HHhhccCCccEEEcCHHHHHHhhcCCC
Q 018120 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF------EMVRNFRTPL-LQLLESGDVDLCFANEDEAAELVRGEE 244 (360)
Q Consensus 172 ~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~------~~~~~~~~~l-~~~l~~~~~dil~~n~~E~~~l~~~~~ 244 (360)
+.+.+++ .-+.+.+..+++.+++.+.+++|||... .......+.+ .++++ ++|++++|..|++.|+|...
T Consensus 73 ~~ik~G~-l~~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp--~adli~pN~~Ea~~L~g~~i 149 (448)
T PRK08573 73 DAAKTGM-LSNREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLP--LATVVTPNRPEAEKLTGMKI 149 (448)
T ss_pred CEEEECC-cCCHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhc--cCEEEcCCHHHHHHHhCCCC
Confidence 4455543 2357899999999999999999999521 1011111223 45677 89999999999999998642
Q ss_pred --CCcHHHHHHHHH--cCCCEEEEEeCC----Cce-EEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHH
Q 018120 245 --NADSEAALEFLA--KRCQWAVVTLGP----NGC-IAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLE 315 (360)
Q Consensus 245 --~~~~~~~~~~l~--~~~~~vivt~G~----~G~-~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~ 315 (360)
.++..++.+.+. .+++.|+||.|. +|+ +++++++.++++++ ..+++|++||||+|.|+|++++++|++++
T Consensus 150 ~~~~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~-~v~~~dt~GAGDaFsAa~aa~l~~G~~l~ 228 (448)
T PRK08573 150 RSVEDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAP-RVESGCTHGTGCSFSAAIAAGLAKGLDPE 228 (448)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEec-CcCCCCCCChHHHHHHHHHHHHHcCCCHH
Confidence 123444545443 488999999985 354 45567777788877 47889999999999999999999999999
Q ss_pred HHHHHHHHHhcchhcc
Q 018120 316 ECCKVGSCSGGSVIRS 331 (360)
Q Consensus 316 ~a~~~a~~aaa~~v~~ 331 (360)
+|+++|+.+....+++
T Consensus 229 eAl~~A~~~~~~al~~ 244 (448)
T PRK08573 229 EAIKTAKKFITMAIKY 244 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888883
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.67 E-value=1.9e-15 Score=135.94 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=117.9
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCC-eEEEeCCChhH------HHhhhHHHHH-hhccCCccEEEcCHHHHHHhhc
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASFEM------VRNFRTPLLQ-LLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~~~~------~~~~~~~l~~-~l~~~~~dil~~n~~E~~~l~~ 241 (360)
..+.+.+++. -+.+.+..+.+.+++.+. ++++||..... .....+.+.+ +++ .+|+++||..|++.|++
T Consensus 74 ~~~aikiG~l-~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~--~advitpN~~Ea~~L~g 150 (270)
T PRK12616 74 GVDAMKTGML-PTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAP--LATVITPNLFEAGQLSG 150 (270)
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhc--cceEecCCHHHHHHHcC
Confidence 4678888732 257888888888888764 69999974211 1122233443 566 89999999999999998
Q ss_pred CCCC---CcHHHHHH-HHHcCCCEEEEEeCCCce------EEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcC
Q 018120 242 GEEN---ADSEAALE-FLAKRCQWAVVTLGPNGC------IAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKG 311 (360)
Q Consensus 242 ~~~~---~~~~~~~~-~l~~~~~~vivt~G~~G~------~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~ 311 (360)
.... ++..++.+ +...+++.|+||.|..|. +++++++.++++.+ ..+..|++||||+|.|+|++++++|
T Consensus 151 ~~~~~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~GaGD~fsaalaa~l~~g 229 (270)
T PRK12616 151 MGEIKTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESE-MIDTPYTHGAGCTFSAAVTAELAKG 229 (270)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEee-eeCCCCCCcHHHHHHHHHHHHHHCC
Confidence 5211 23334434 445688999999998762 55667666677766 4778899999999999999999999
Q ss_pred CCHHHHHHHHHHHhcchhcc
Q 018120 312 LSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 312 ~~l~~a~~~a~~aaa~~v~~ 331 (360)
+++++|+++|.......++.
T Consensus 230 ~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 230 SEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888876
No 62
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=138.74 Aligned_cols=250 Identities=22% Similarity=0.315 Sum_probs=167.5
Q ss_pred ccccccccCCCeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHH
Q 018120 6 LIINREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85 (360)
Q Consensus 6 ~~~~~~~~~~~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~ 85 (360)
+++++..+-..+=+++| ..++|..+.+++++- -+|++.. ....+..||.+-|.
T Consensus 331 ~~s~~~~~~~~KPv~vG-a~i~D~~~k~d~d~K-----~dG~sy~---------------------~~~~Qa~GGVarN~ 383 (614)
T KOG3009|consen 331 SQSQPTASTTRKPVSVG-ATIVDFEAKTDEDVK-----DDGGSYN---------------------GQVVQAMGGVARNH 383 (614)
T ss_pred cCCCCccccccCceeec-ceEEEeEEeeccccc-----ccCCccc---------------------chhhhhccchhhhH
Confidence 44555544444449999 999999999975221 1222211 13678899999999
Q ss_pred HHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCc
Q 018120 86 IRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA 165 (360)
Q Consensus 86 a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~ 165 (360)
|.++++ ||.++.|++.||+|..+++.+. ...++ -+..
T Consensus 384 A~a~~~-lg~d~~liSavG~d~n~~~~~~---------------------------------------~~~~~--~e~~- 420 (614)
T KOG3009|consen 384 ADALAR-LGCDSVLISAVGDDNNGHFFRQ---------------------------------------NSHKI--VESN- 420 (614)
T ss_pred HHHHHH-hcCCeeEEEEeccCCcchhhhh---------------------------------------hhhhh--hhhh-
Confidence 999999 9999999999999921111110 00000 0111
Q ss_pred cccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCC--
Q 018120 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE-- 243 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~-- 243 (360)
+.+.++++++++ +.+++..+.++++ ++.+..+|+|+|.+..... +.|.-++. ..++.+.||..|+-......
T Consensus 421 ~dl~~a~~I~~D-sNiS~~~Ma~il~-ak~~k~~V~fEPTd~~k~~---K~fk~l~v-~~i~~i~PN~~Ell~a~k~~~v 494 (614)
T KOG3009|consen 421 EDLLSADFILLD-SNISVPVMARILE-AKKHKKQVWFEPTDIDKVK---KVFKTLLV-GAITAISPNANELLKAAKLCHV 494 (614)
T ss_pred hhhhcCCEEEEc-CCCCHHHHHHHHH-hhhccCceEecCCCchhhh---hhhhhcce-eeEEeeCCCHHHHHHHhhcCce
Confidence 223378999998 6678999999999 9999999999998765432 22333333 36899999999985433211
Q ss_pred --CC------CcHHHH----HHHHHcCCCEEEEEeCCCceEEEECCE-----EEEeCC-cCCCcccCCCCccHHhHHHHH
Q 018120 244 --EN------ADSEAA----LEFLAKRCQWAVVTLGPNGCIAKHGKE-----IVKVPA-IGEAKAIDATGAGDLFASGFL 305 (360)
Q Consensus 244 --~~------~~~~~~----~~~l~~~~~~vivt~G~~G~~~~~~~~-----~~~~~~-~~~~~vvdttGAGD~f~ag~~ 305 (360)
.. +..-+. .+.+.....+.|+|...+|+.+..++. ....|+ ....++++..||||+|++||+
T Consensus 495 ~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i 574 (614)
T KOG3009|consen 495 SVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVI 574 (614)
T ss_pred eeChhhhccchHHHHHHHHHHHHhhcccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCccccccee
Confidence 00 111111 112233567899999999988765542 222232 234688999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 306 YGLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 306 ~~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
.+++.+.++.++++-+..++..-.+.
T Consensus 575 ~~l~~~~~v~es~~gg~~~~ralls~ 600 (614)
T KOG3009|consen 575 AGLAHNKTVVESLQGGQECARALLST 600 (614)
T ss_pred ehhhcCcchHhhccccHHHHHHHHhc
Confidence 99999999999999996665554433
No 63
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.58 E-value=4.7e-14 Score=126.03 Aligned_cols=159 Identities=19% Similarity=0.101 Sum_probs=114.3
Q ss_pred ccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCC
Q 018120 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA 246 (360)
Q Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~ 246 (360)
.+.+.|+++++++....+.+..+++.+++++.++++|+......... ... .+.+ .+++++||..|++.|++....+
T Consensus 74 ~~~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~-~~~-~~~~--~~~iltPn~~E~~~L~g~~~~~ 149 (254)
T cd01171 74 LLERADAVVIGPGLGRDEEAAEILEKALAKDKPLVLDADALNLLADE-PSL-IKRY--GPVVLTPHPGEFARLLGALVEE 149 (254)
T ss_pred hhccCCEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcC-hhh-hccC--CCEEECCCHHHHHHHhCCChhh
Confidence 34677999998554344888899999999999999999754321111 011 1234 7899999999999999864211
Q ss_pred ---cHHH-HHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHH
Q 018120 247 ---DSEA-ALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGS 322 (360)
Q Consensus 247 ---~~~~-~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~ 322 (360)
+..+ +.++.+.+ ..++++.|. +.+++++++.++++.. ....++++|+||+|.|.+.+.+.+|+++.+|+++|+
T Consensus 150 ~~~~~~~~a~~l~~~~-~~~vvlkG~-~~~i~~~~~~~~~~~~-~~~~~~~~GaGD~lag~iaa~la~g~~~~eA~~~A~ 226 (254)
T cd01171 150 IQADRLAAAREAAAKL-GATVVLKGA-VTVIADPDGRVYVNPT-GNPGLATGGSGDVLAGIIAALLAQGLSPLEAAALAV 226 (254)
T ss_pred hhhHHHHHHHHHHHHc-CcEEEEcCC-CCEEECCCCcEEEECC-CCcccccCchHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2223 33444444 566667784 5666666555666666 467889999999998888888889999999999999
Q ss_pred HHhcchhccc
Q 018120 323 CSGGSVIRSL 332 (360)
Q Consensus 323 ~aaa~~v~~~ 332 (360)
.+.+.+.+..
T Consensus 227 ~~~~~a~~~~ 236 (254)
T cd01171 227 YLHGLAGDLA 236 (254)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 64
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.53 E-value=6.3e-13 Score=119.82 Aligned_cols=173 Identities=16% Similarity=0.050 Sum_probs=117.6
Q ss_pred ccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCC--
Q 018120 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE-- 244 (360)
Q Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~-- 244 (360)
.++.+|+++++++..+...+..+++.+++.+.++++|+.... +......... .+++++||..|++.|++...
T Consensus 89 ~~~~~davvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa~g~~----l~~~~~~~~~--~~~vItPN~~El~~L~g~~~~~ 162 (272)
T TIGR00196 89 LLERYDVVVIGPGLGQDPSFKKAVEEVLELDKPVVLDADALN----LLTYDKPKRE--GEVILTPHPGEFKRLLGLVNEI 162 (272)
T ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEhHHHH----HHhhcccccC--CCEEECCCHHHHHHHhCCchhh
Confidence 357789999996555555688899999999999999996432 2222111122 68999999999999998542
Q ss_pred CCcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHH---
Q 018120 245 NADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVG--- 321 (360)
Q Consensus 245 ~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a--- 321 (360)
.++..++.+.+.+..+.+|++.|..+.++..++..+..+.. ....+++|+||++.|.+.+.+.+|.++.+|+..|
T Consensus 163 ~~~~~~aa~~l~~~~~~vVv~kG~~~~i~~~~~~~~~~~~~--~~~~~~~GaGD~lag~iaa~la~g~~~~~A~~~a~~~ 240 (272)
T TIGR00196 163 QGDRLEAAQDIAQKLQAVVVLKGAADVIAAPDGDLWINKTG--NAALAKGGTGDVLAGLIGGLLAQNLDPFDAACNAAFA 240 (272)
T ss_pred hhhHHHHHHHHHHHhCCEEEEcCCCCEEEcCCCeEEEECCC--CCccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 12333444444444567899999999877654555544433 5667899999995555555566999999999777
Q ss_pred HHHhcchhcc-cCCccCcccHHHHHHHHH
Q 018120 322 SCSGGSVIRS-LGGEVTPENWQWMRKQMQ 349 (360)
Q Consensus 322 ~~aaa~~v~~-~G~~~~~~~~~~~~~~~~ 349 (360)
+..|+..+.. .|+. .-+..++.+.+.
T Consensus 241 ~~~a~~~~~~~~g~~--~~~~~dl~~~i~ 267 (272)
T TIGR00196 241 HGLAGDLALKNHGAY--GLTALDLIEKIP 267 (272)
T ss_pred HHHHHHHHHHhcCCC--CcCHHHHHHHHH
Confidence 7777776644 3532 233456666554
No 65
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.52 E-value=5.9e-13 Score=130.04 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=117.9
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCCe-EEEeCCCh------hHHHhhhHHHH-HhhccCCccEEEcCHHHHHHhhc
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASF------EMVRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~------~~~~~~~~~l~-~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
..+.+.+++ ..+.+.+..+++.+++.+.+ +++||... ...+...+.+. ++++ .+|+++||..|++.|++
T Consensus 78 ~~~aik~G~-l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~--~adiitPN~~Ea~~L~g 154 (502)
T PLN02898 78 PVDVVKTGM-LPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLP--LATIVTPNVKEASALLG 154 (502)
T ss_pred CCCEEEECC-cCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhc--cCeEEcCCHHHHHHHhC
Confidence 356677762 23578888999988888775 99999521 11112223343 4666 89999999999999997
Q ss_pred CCCC---CcHHHHH-HHHHcCCCEEEEEeCCCc------eEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcC
Q 018120 242 GEEN---ADSEAAL-EFLAKRCQWAVVTLGPNG------CIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKG 311 (360)
Q Consensus 242 ~~~~---~~~~~~~-~~l~~~~~~vivt~G~~G------~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~ 311 (360)
.... ++..++. .+...+++.|+||.|..+ .+++++++.++++.+ ..+.+|++|+||+|.|+|++++++|
T Consensus 155 ~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~-~i~~~~t~GaGD~fsaaiaa~l~~G 233 (502)
T PLN02898 155 GDPLETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSS-RIKTRNTHGTGCTLASCIAAELAKG 233 (502)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecc-eeCCCCCCchhhhHHHHHHHHHHcC
Confidence 5322 2233343 344557899999999753 356666666677776 4677899999999999999999999
Q ss_pred CCHHHHHHHHHHHhcchhccc
Q 018120 312 LSLEECCKVGSCSGGSVIRSL 332 (360)
Q Consensus 312 ~~l~~a~~~a~~aaa~~v~~~ 332 (360)
+++++|+++|..+...++.+.
T Consensus 234 ~~l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 234 SDMLSAVKVAKRYVETALEYS 254 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998763
No 66
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.49 E-value=9e-13 Score=128.79 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=109.9
Q ss_pred CcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChh-----HH-----HhhhHHHH-HhhccCCccEEEcCHHHHHHh
Q 018120 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE-----MV-----RNFRTPLL-QLLESGDVDLCFANEDEAAEL 239 (360)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~-----~~-----~~~~~~l~-~~l~~~~~dil~~n~~E~~~l 239 (360)
.+++.++ ...+.+.+..+++.++ +.++++||.... .. +...+.+. ++++ .+|+++||..|++.|
T Consensus 300 ~~~Ik~G-~l~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~--~advitPN~~Ea~~L 374 (504)
T PTZ00347 300 ISVVKLG-LVPTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFP--MATIITPNIPEAERI 374 (504)
T ss_pred CCEEEEC-CcCCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccC--cceEEeCCHHHHHHH
Confidence 3444444 2335788888888775 678999985321 00 11112222 4667 899999999999999
Q ss_pred hcCCCCC---cHHHHH-HHHHcCCCEEEEEeCCCc-------eEEEEC--CEEEEeCCcCCCcccCCCCccHHhHHHHHH
Q 018120 240 VRGEENA---DSEAAL-EFLAKRCQWAVVTLGPNG-------CIAKHG--KEIVKVPAIGEAKAIDATGAGDLFASGFLY 306 (360)
Q Consensus 240 ~~~~~~~---~~~~~~-~~l~~~~~~vivt~G~~G-------~~~~~~--~~~~~~~~~~~~~vvdttGAGD~f~ag~~~ 306 (360)
+|..... +..++. .+...+++.|+||.|..| .+++.+ ++.++++.+ ..+++|++||||+|.|+|++
T Consensus 375 ~g~~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~~~~~~GaGD~fsaaiaa 453 (504)
T PTZ00347 375 LGRKEITGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTAN-RIATINTHGTGCTLASAISS 453 (504)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEee-eECCCCCCChHHHHHHHHHH
Confidence 9863222 233343 444558899999999863 344442 356677777 47789999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 307 GLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 307 ~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
++++|+++++|+++|...-...+..
T Consensus 454 ~la~G~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 454 FLARGYTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998887777755
No 67
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.46 E-value=1.8e-12 Score=118.29 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=105.5
Q ss_pred CCcEEEEeecccCHHHHHHHHHHH---HHCC--CeEEEeCCCh-----hHHHhhhHHHHHhhccCCccEEEcCHHHHHHh
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIA---KQEG--LSVSMDLASF-----EMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a---~~~~--~~v~~d~~~~-----~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l 239 (360)
+.+++..++ .-+.+.+..+++.+ ++.+ .++++||.-. +..+...+.+.++++ ++|++++|+.|+..|
T Consensus 77 ~~~~v~sG~-l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~--~~dii~pN~~E~~~L 153 (296)
T PTZ00344 77 DYTYVLTGY-INSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIP--YADVITPNQFEASLL 153 (296)
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhh--hCCEEeCCHHHHHHH
Confidence 346666653 22466666555554 4454 4799996421 122345566677787 899999999999999
Q ss_pred hcCCCC--CcHHHHHH-HHHcCCCEEEEE---eCCCc----eEEEEC------CEEEEeCCcCCCcccCCCCccHHhHHH
Q 018120 240 VRGEEN--ADSEAALE-FLAKRCQWAVVT---LGPNG----CIAKHG------KEIVKVPAIGEAKAIDATGAGDLFASG 303 (360)
Q Consensus 240 ~~~~~~--~~~~~~~~-~l~~~~~~vivt---~G~~G----~~~~~~------~~~~~~~~~~~~~vvdttGAGD~f~ag 303 (360)
+|.+.. ++..++.+ +...+++.|+|| .|.+| +++.+. ++.+.+..+ ..+ ++++||||+|.|+
T Consensus 154 ~g~~~~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~GaGD~f~A~ 231 (296)
T PTZ00344 154 SGVEVKDLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVP-YIE-GRYTGTGDLFAAL 231 (296)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEecc-ccC-CCCCCchHHHHHH
Confidence 986421 12333433 445588999999 55566 444421 334555544 344 5779999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 304 FLYGLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 304 ~~~~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
|++.+.+| ++++|+++|.+.-..+++.
T Consensus 232 ~~a~l~~g-~~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 232 LLAFSHQH-PMDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 99888888 9999999999988877766
No 68
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.42 E-value=6.3e-12 Score=110.91 Aligned_cols=162 Identities=23% Similarity=0.136 Sum_probs=112.1
Q ss_pred cccCCCcEEEEeecccCH---HHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcC
Q 018120 166 EDVKGSKWLVLRFGMFNF---EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~ 242 (360)
+.++++|++++..+.... +.+...++.+++.+.++++||..........+.+.+++....+|++.||..|+..|++.
T Consensus 45 ~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~L~g~ 124 (242)
T cd01170 45 ELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALAGL 124 (242)
T ss_pred HHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHHHhCC
Confidence 457889999999544443 45555666788889999999963211111112234445411389999999999999985
Q ss_pred CC-----------CCcHHH-HHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHc
Q 018120 243 EE-----------NADSEA-ALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVK 310 (360)
Q Consensus 243 ~~-----------~~~~~~-~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~ 310 (360)
.. .++..+ +.++...+...|++| |.... ++++++.++++..+ ....++.|+||+|.|++...+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~~~~~~~~~~-~~~~~v~GtGdtLa~aiAa~LA~ 201 (242)
T cd01170 125 TGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-ITDGERVVVVKNGH-PLLTKITGTGCLLGAVIAAFLAV 201 (242)
T ss_pred CCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECCEEEEEeCCC-ccccCCCchHHHHHHHHHHHHhC
Confidence 42 122333 344445555678888 66654 55777788887653 34456789999999999999999
Q ss_pred CCCHHHHHHHHHHHhcchhc
Q 018120 311 GLSLEECCKVGSCSGGSVIR 330 (360)
Q Consensus 311 ~~~l~~a~~~a~~aaa~~v~ 330 (360)
|.++.+|+..|...-+.+.+
T Consensus 202 g~~~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 202 GDDPLEAAVSAVLVYGIAGE 221 (242)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999776666654
No 69
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.42 E-value=3.4e-12 Score=129.87 Aligned_cols=158 Identities=14% Similarity=0.128 Sum_probs=116.4
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHC-CCeEEEeCCChh------HHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcC
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASFE------MVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~~------~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~ 242 (360)
..+.+-+++ ..+.+.+..+++.+++. +.++++||.-.. ......+.+.++++ .+|+++||..|+..|+|.
T Consensus 310 ~~~aiKiGm-L~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp--~adlItPN~~Ea~~L~g~ 386 (755)
T PRK09517 310 TVDAVKLGM-LGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAV--HVDVVTPNIPELAVLCGE 386 (755)
T ss_pred CCCEEEECC-CCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhC--cccCccCCHHHHHHHhCC
Confidence 356677763 23578888888888874 567999985221 11122344567888 899999999999999985
Q ss_pred CCC---CcHHHHH-HHHHcCCCEEEEEeCC------CceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCC
Q 018120 243 EEN---ADSEAAL-EFLAKRCQWAVVTLGP------NGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL 312 (360)
Q Consensus 243 ~~~---~~~~~~~-~~l~~~~~~vivt~G~------~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~ 312 (360)
... ++..++. ++...+...||||.|. .++++..++..++++.+ ..+.+|++|+||+|.|+|++++++|+
T Consensus 387 ~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~-~v~~~~t~GaGDtfsaaiaa~La~G~ 465 (755)
T PRK09517 387 APAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENP-RVNTTNSHGTGCSLSAALATLIAAGE 465 (755)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeec-ccCCCCCcChHHHHHHHHHHHHHCCC
Confidence 321 2233333 3444445689999983 46666656666778877 57889999999999999999999999
Q ss_pred CHHHHHHHHHHHhcchhcc
Q 018120 313 SLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 313 ~l~~a~~~a~~aaa~~v~~ 331 (360)
++++|+++|...-...+.+
T Consensus 466 sl~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 466 SVEKALEWATRWLNEALRH 484 (755)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888765
No 70
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.39 E-value=1.1e-11 Score=121.71 Aligned_cols=155 Identities=17% Similarity=0.092 Sum_probs=106.8
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHC-CCeEEEeCCCh------hHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcC
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASF------EMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~------~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~ 242 (360)
..+.+.+++. -+.+.+..+.+..++. +.++++||.-. ...+...+.+.++++ .+|+++||..|++.|+|.
T Consensus 98 ~~~aikiG~l-~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~--~advItPN~~Ea~~Ltg~ 174 (530)
T PRK14713 98 TVDAVKIGML-GDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVP--RADLITPNLPELAVLLGE 174 (530)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhh--hhheecCChHHHHHHhCC
Confidence 3567777622 2455666666655554 34689999531 112334456667888 899999999999999985
Q ss_pred CCC---CcHHHHHHHH-HcCCCEEEEEeCCCc-----eEEE-ECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCC
Q 018120 243 EEN---ADSEAALEFL-AKRCQWAVVTLGPNG-----CIAK-HGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL 312 (360)
Q Consensus 243 ~~~---~~~~~~~~~l-~~~~~~vivt~G~~G-----~~~~-~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~ 312 (360)
... ++..++.+.+ ..+...||||.|..+ .+++ .+++.++++.. ..+.+|++|+||+|.|+|++++++|+
T Consensus 175 ~~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~-~v~~~~t~GaGD~fsaalaa~La~G~ 253 (530)
T PRK14713 175 PPATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGP-RVDTRNTHGTGCSLSSALATRLGRGG 253 (530)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeee-eeCCCCCCcHHHHHHHHHHHHHHCCC
Confidence 421 2222333334 445578999988632 3344 44446777776 47789999999999999999999999
Q ss_pred CHHHHHHHHHHHhcch
Q 018120 313 SLEECCKVGSCSGGSV 328 (360)
Q Consensus 313 ~l~~a~~~a~~aaa~~ 328 (360)
++++|+++|...-...
T Consensus 254 ~l~eAv~~A~~~v~~~ 269 (530)
T PRK14713 254 DWAAALRWATAWLHGA 269 (530)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999843333
No 71
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.38 E-value=6.8e-12 Score=111.29 Aligned_cols=158 Identities=23% Similarity=0.182 Sum_probs=109.3
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh------hHHHhhhHHHHH-hhccCCccEEEcCHHHHHHhhcC
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF------EMVRNFRTPLLQ-LLESGDVDLCFANEDEAAELVRG 242 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~------~~~~~~~~~l~~-~l~~~~~dil~~n~~E~~~l~~~ 242 (360)
..|.+.+++. -+.+.+..+.+..++.+.++++||.-. ...+...+.+.+ +++ .+|++.||..|++.|++.
T Consensus 60 ~~~aikiG~l-~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp--~AdiitPN~~Ea~~L~g~ 136 (246)
T PF08543_consen 60 KFDAIKIGYL-GSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLP--LADIITPNLTEAELLTGR 136 (246)
T ss_dssp C-SEEEE-S--SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGG--G-SEEE-BHHHHHHHHTS
T ss_pred cccEEEEccc-CCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCC--cCeEEeCCHHHHHHHhCC
Confidence 5688888742 257777777777777888999999521 112234455554 788 899999999999999994
Q ss_pred CC--CCcHHHH-HHHHHcCCCEEEEEeCCC----c---eEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCC
Q 018120 243 EE--NADSEAA-LEFLAKRCQWAVVTLGPN----G---CIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL 312 (360)
Q Consensus 243 ~~--~~~~~~~-~~~l~~~~~~vivt~G~~----G---~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~ 312 (360)
.- .++..++ .++++.+++.|+||-+.. + -+++++++.+.+..+ .....+..|.||.|.++|++.+++|+
T Consensus 137 ~i~~~~~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~GTGd~fss~laa~l~~g~ 215 (246)
T PF08543_consen 137 EINSEEDIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSP-RIPTGSFHGTGDLFSSALAAFLAKGY 215 (246)
T ss_dssp --SSHHHHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEE-EECTSGCTTHHHHHHHHHHHHHHTTS
T ss_pred CCCChHhHHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeeccee-EEcCCCCCCchhHHHHHHHHHHHcCC
Confidence 32 1223333 445566899999998862 2 344566676666655 23446889999999999999999999
Q ss_pred CHHHHHHHHHHHhcchhcc
Q 018120 313 SLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 313 ~l~~a~~~a~~aaa~~v~~ 331 (360)
++++|++.|...-...++.
T Consensus 216 ~l~~Av~~A~~~v~~~i~~ 234 (246)
T PF08543_consen 216 SLEEAVEKAKNFVRRAIKN 234 (246)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777764
No 72
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.34 E-value=6.7e-11 Score=103.07 Aligned_cols=155 Identities=21% Similarity=0.152 Sum_probs=117.4
Q ss_pred cEEEEeecccCHHHHHHHHHHHHHCC-CeEEEeCC------ChhHHHhhhHHHH-HhhccCCccEEEcCHHHHHHhhcC-
Q 018120 172 KWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLA------SFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELVRG- 242 (360)
Q Consensus 172 ~~v~~~~~~~~~~~~~~~~~~a~~~~-~~v~~d~~------~~~~~~~~~~~l~-~~l~~~~~dil~~n~~E~~~l~~~- 242 (360)
+.+=++ ..-+.+++..+.+..++++ .++++||. +....+...+.+. +++| .++++.||..|++.|.|.
T Consensus 74 ~avKtG-ML~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP--~a~vvTPNl~EA~~L~g~~ 150 (263)
T COG0351 74 DAVKTG-MLGSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLP--LATVVTPNLPEAEALSGLP 150 (263)
T ss_pred CEEEEC-CcCCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhc--cCeEecCCHHHHHHHcCCC
Confidence 444443 2236889999999999988 78999994 2222233344444 6788 999999999999999995
Q ss_pred C--CCCcHHHHHHHH-HcCCCEEEEEeCCCc----eEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHH
Q 018120 243 E--ENADSEAALEFL-AKRCQWAVVTLGPNG----CIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLE 315 (360)
Q Consensus 243 ~--~~~~~~~~~~~l-~~~~~~vivt~G~~G----~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~ 315 (360)
. +.++.+++.+++ +.+++.|+||-|... -++|.++..+.+..+ ...-.++-|+|++|.+++.+.|++|.+++
T Consensus 151 ~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~-ri~t~~tHGTGCTlSaAIaa~LA~G~~l~ 229 (263)
T COG0351 151 KIKTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAP-RIPTKNTHGTGCTLSAAIAANLAKGLSLE 229 (263)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEEecc-ccCCCCCCCccHHHHHHHHHHHHcCCCHH
Confidence 2 223445555555 459999999988643 345566666777776 57777899999999999999999999999
Q ss_pred HHHHHHHHHhcchhc
Q 018120 316 ECCKVGSCSGGSVIR 330 (360)
Q Consensus 316 ~a~~~a~~aaa~~v~ 330 (360)
+|++.|-..-..+++
T Consensus 230 ~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 230 EAVKKAKEFVTRAIR 244 (263)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998888887
No 73
>PLN02978 pyridoxal kinase
Probab=99.33 E-value=4.9e-11 Score=109.16 Aligned_cols=157 Identities=18% Similarity=0.081 Sum_probs=105.1
Q ss_pred CcEEEEeecc--cCHHHHHHHHHHHHH--CCCeEEEeCCCh-----hHHHhhhHHHH-HhhccCCccEEEcCHHHHHHhh
Q 018120 171 SKWLVLRFGM--FNFEVIQAAIRIAKQ--EGLSVSMDLASF-----EMVRNFRTPLL-QLLESGDVDLCFANEDEAAELV 240 (360)
Q Consensus 171 ~~~v~~~~~~--~~~~~~~~~~~~a~~--~~~~v~~d~~~~-----~~~~~~~~~l~-~~l~~~~~dil~~n~~E~~~l~ 240 (360)
+|.+.+++.. -..+.+.++++.+++ .++++++||.-. +..+...+.+. ++++ .+|++++|..|++.|+
T Consensus 87 ~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~--~adiitPN~~Ea~~L~ 164 (308)
T PLN02978 87 YTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVP--LATMLTPNQFEAEQLT 164 (308)
T ss_pred cCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHh--hCCeeccCHHHHHHHh
Confidence 6788887431 124666777777776 457789999721 11222333443 4777 8999999999999999
Q ss_pred cCCCCC--cHHHH-HHHHHcCCCEEEEEeCC-CceEE-EE--------CCEEEEeCCcCCCcccCCCCccHHhHHHHHHH
Q 018120 241 RGEENA--DSEAA-LEFLAKRCQWAVVTLGP-NGCIA-KH--------GKEIVKVPAIGEAKAIDATGAGDLFASGFLYG 307 (360)
Q Consensus 241 ~~~~~~--~~~~~-~~~l~~~~~~vivt~G~-~G~~~-~~--------~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~ 307 (360)
|....+ +..++ .++...+++.||||.+. +|... .. .++.+++..+ ..+.. ++|+||+|.|.+++.
T Consensus 165 g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~-~~GtGD~fsA~laa~ 242 (308)
T PLN02978 165 GIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIP-KIPAY-FTGTGDLMAALLLGW 242 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEcc-CCCCC-CCCchHHHHHHHHHH
Confidence 864211 23333 44555688899998754 34332 21 1245555555 34444 589999999988888
Q ss_pred HHcC-CCHHHHHHHHHHHhcchhcc
Q 018120 308 LVKG-LSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 308 l~~~-~~l~~a~~~a~~aaa~~v~~ 331 (360)
+.+| .++++|++.|...-...++.
T Consensus 243 l~~g~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 243 SHKYPDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred HhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 8887 79999999999888877765
No 74
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.14 E-value=2.3e-09 Score=95.87 Aligned_cols=160 Identities=24% Similarity=0.168 Sum_probs=106.0
Q ss_pred cccCCCcEEEEeecccCHHHH---HHHHHHHHHCCCeEEEeCCChhHHHhhhH-HHHHhhccCCccEEEcCHHHHHHhhc
Q 018120 166 EDVKGSKWLVLRFGMFNFEVI---QAAIRIAKQEGLSVSMDLASFEMVRNFRT-PLLQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~a~~~~~~v~~d~~~~~~~~~~~~-~l~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
+.++.+|.+++..+.+..+.. ..+++.+++.+.++++||...... .++. ...++++..++++++||..|+..|++
T Consensus 50 ~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~-~~~~~~~~~ll~~~~~~vItPN~~E~~~L~g 128 (263)
T PRK09355 50 EMAKIAGALVINIGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGAT-SYRTEFALELLAEVKPAVIRGNASEIAALAG 128 (263)
T ss_pred HHHHhcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcc-hhhHHHHHHHHHhcCCcEecCCHHHHHHHhC
Confidence 446788999999655555444 445556788899999999754321 2222 22233332257999999999999998
Q ss_pred CCC----------CCcHHHH-HHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHc
Q 018120 242 GEE----------NADSEAA-LEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVK 310 (360)
Q Consensus 242 ~~~----------~~~~~~~-~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~ 310 (360)
... .++..++ .++.+++...|++|-+.+ +++++++.+.++.- .....+.+|+||++.|.+.+.+..
T Consensus 129 ~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~d--~I~~~~~~~~~~~g-~~~~~~v~GtGc~L~~~iaa~lA~ 205 (263)
T PRK09355 129 EAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEVD--YITDGERVVSVHNG-HPLMTKVTGTGCLLSAVVAAFAAV 205 (263)
T ss_pred CCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCCc--EEEeCCEEEEEeCC-CcccCCcccccHHHHHHHHHHHhc
Confidence 531 1123333 344445556777774433 44456666666633 234456699999999999999999
Q ss_pred CCCHHHHHHHHHHHhcchh
Q 018120 311 GLSLEECCKVGSCSGGSVI 329 (360)
Q Consensus 311 ~~~l~~a~~~a~~aaa~~v 329 (360)
|.++.+|+..|...-+.+-
T Consensus 206 g~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 206 EKDYLEAAAAACAVYGIAG 224 (263)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999988877655554
No 75
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.04 E-value=3.5e-09 Score=92.90 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=110.3
Q ss_pred cccCCCcEEEEeeccc--CHHHHHHHHHHHHHCC--CeEEEeCC-----ChhHHHhhhHHHH-HhhccCCccEEEcCHHH
Q 018120 166 EDVKGSKWLVLRFGMF--NFEVIQAAIRIAKQEG--LSVSMDLA-----SFEMVRNFRTPLL-QLLESGDVDLCFANEDE 235 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~--~~~~~~~~~~~a~~~~--~~v~~d~~-----~~~~~~~~~~~l~-~~l~~~~~dil~~n~~E 235 (360)
+.+..+|.|+.+|... ....+..+++..|+.+ ..+++||. ..+...+..+... ++++ .+|++.||.-|
T Consensus 69 ~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip--~AdiiTPN~fE 146 (281)
T COG2240 69 DKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLP--LADIITPNIFE 146 (281)
T ss_pred ccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcc--hhhEeCCCHHH
Confidence 4578899999985332 2466677777777764 44889984 1122222233333 5777 89999999999
Q ss_pred HHHhhcCCCCCcHH---HH-HHHHHcCCCEEEEEeCCC-----ceEEEECC---EEEEeCCcCCCcccCCCCccHHhHHH
Q 018120 236 AAELVRGEENADSE---AA-LEFLAKRCQWAVVTLGPN-----GCIAKHGK---EIVKVPAIGEAKAIDATGAGDLFASG 303 (360)
Q Consensus 236 ~~~l~~~~~~~~~~---~~-~~~l~~~~~~vivt~G~~-----G~~~~~~~---~~~~~~~~~~~~vvdttGAGD~f~ag 303 (360)
++.|+|.. .++.+ ++ ..+.+.+.+.|+||.=.. |.+++... ..+|+- + .. ..+++|.||.|+|-
T Consensus 147 Le~Ltg~~-~~~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~-~v-~~~~~GtGDL~sal 222 (281)
T COG2240 147 LEILTGKP-LNTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-P-LV-PFIPNGTGDLFSAL 222 (281)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-h-cC-CCCCCCchHHHHHH
Confidence 99999976 23333 33 334455889999996443 44554432 233433 2 12 23499999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 304 FLYGLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 304 ~~~~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
|++.+++|.++.+|+..+..+-...++.
T Consensus 223 lla~lL~g~~~~~al~~~~~~V~evl~~ 250 (281)
T COG2240 223 LLARLLEGLSLTQALERATAAVYEVLQE 250 (281)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888764
No 76
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.04 E-value=7.2e-09 Score=91.96 Aligned_cols=161 Identities=20% Similarity=0.112 Sum_probs=102.5
Q ss_pred cccCCCcEEEEeecccCH---HHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcC
Q 018120 166 EDVKGSKWLVLRFGMFNF---EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~ 242 (360)
+..+.++.+++..+++.. +.+..+++.+++.+.++++||..............++++..+++++.||..|+..|++.
T Consensus 45 ~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~L~g~ 124 (249)
T TIGR00694 45 ELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIASLAGE 124 (249)
T ss_pred HHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHHHhCC
Confidence 446778999999555554 34455566677789999999975432211112223455422479999999999999985
Q ss_pred CC----------CCcHHHH-HHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcC
Q 018120 243 EE----------NADSEAA-LEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKG 311 (360)
Q Consensus 243 ~~----------~~~~~~~-~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~ 311 (360)
.. .++...+ .++.+++...|++| |..- +++++++.+.+...+ ......+|.||++.+.+.+.+.+|
T Consensus 125 ~~~~~gvd~~~~~~d~~~~a~~la~~~~~~Vllk-G~~D-~i~~~~~~~~~~~g~-~~~~~~~GtGc~LssaIaa~LA~g 201 (249)
T TIGR00694 125 TGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVIT-GEVD-YVSDGTSVYTIHNGT-ELLGKITGSGCLLGSVVAAFCAVE 201 (249)
T ss_pred CCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEE-CCCc-EEEeCCEEEEECCCC-hHHhCCccchHHHHHHHHHHHhcC
Confidence 30 1122233 33444444466665 4433 455666666654432 111224799999999999999999
Q ss_pred CCHHHHHHHHHHHhcchh
Q 018120 312 LSLEECCKVGSCSGGSVI 329 (360)
Q Consensus 312 ~~l~~a~~~a~~aaa~~v 329 (360)
.++.+|+..|...-..+.
T Consensus 202 ~~~~~A~~~A~~~~~~a~ 219 (249)
T TIGR00694 202 EDPLDAAISACLLYKIAG 219 (249)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999998875544443
No 77
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=98.97 E-value=3e-08 Score=90.14 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=102.4
Q ss_pred CcEEEEeecccCHHHHHHHHHHHHHCC----C--eEEEeCCC-----h-hHH-HhhhHHH-HHhhccCCccEEEcCHHHH
Q 018120 171 SKWLVLRFGMFNFEVIQAAIRIAKQEG----L--SVSMDLAS-----F-EMV-RNFRTPL-LQLLESGDVDLCFANEDEA 236 (360)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~~----~--~v~~d~~~-----~-~~~-~~~~~~l-~~~l~~~~~dil~~n~~E~ 236 (360)
.+.+=++ ..-+.+.+..+.+..++.+ . ++++||.- . ... ..+.+.+ ..+++ .++++.||..|+
T Consensus 74 i~aIKiG-mL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp--~a~viTPN~~Ea 150 (321)
T PTZ00493 74 IDVVKLG-VLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICP--ISCIITPNFYEC 150 (321)
T ss_pred CCEEEEC-CcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhc--cCEEECCCHHHH
Confidence 4556665 2225677777776666542 2 48999941 1 111 1222223 34788 899999999999
Q ss_pred HHhhc-----CC-CCCcHHHHHH-HHH-cCCCEEEEEeCCCc----------e--EEEEC---------------C----
Q 018120 237 AELVR-----GE-ENADSEAALE-FLA-KRCQWAVVTLGPNG----------C--IAKHG---------------K---- 277 (360)
Q Consensus 237 ~~l~~-----~~-~~~~~~~~~~-~l~-~~~~~vivt~G~~G----------~--~~~~~---------------~---- 277 (360)
+.|.+ .. ..++..++.+ ++. .+++.|+||-|... + +++.+ +
T Consensus 151 ~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~ 230 (321)
T PTZ00493 151 KVILEALDCQMDLSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTY 230 (321)
T ss_pred HHHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccc
Confidence 99987 21 1223344444 444 38999999977521 1 23221 1
Q ss_pred --EEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 278 --EIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 278 --~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
..+++... .....++-|+||+|.+++++.|++|+++++|++.|...-..++..
T Consensus 231 ~~~~~~~~~~-ri~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 231 LYDVYKLRSK-RKPGKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred cceEEEEEec-ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 12344444 344456789999999999999999999999999998888777765
No 78
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=98.61 E-value=1.7e-06 Score=75.61 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=103.2
Q ss_pred cccCCCcEEEEeecccCH---HHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcC
Q 018120 166 EDVKGSKWLVLRFGMFNF---EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~ 242 (360)
+..+.++.++++.+.+.. +.+....+.+++.++++++||.........++...+++...++++|++|..|...|.+.
T Consensus 45 e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag~ 124 (246)
T PF02110_consen 45 EFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAALAGE 124 (246)
T ss_dssp HHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHHHHTC
T ss_pred HHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhCc
Confidence 345778899999666555 67777888899999999999987664434445566777445899999999999999985
Q ss_pred CC--------CCc--HHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCC
Q 018120 243 EE--------NAD--SEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL 312 (360)
Q Consensus 243 ~~--------~~~--~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~ 312 (360)
.. ..+ ..++.+.+.+....+|+-.|+.-.+. ++.+.+.++.- ..-.-..||.|+...+-+.+.+....
T Consensus 125 ~~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvTG~~D~Is-dg~~~~~i~nG-~~~l~~itGtGC~lgaliaaf~av~~ 202 (246)
T PF02110_consen 125 DSKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVTGEVDYIS-DGNRVYRIPNG-SPLLSKITGTGCMLGALIAAFLAVAE 202 (246)
T ss_dssp CCCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEESSSEEEE-ESSCEEEECSS-SGGGGGSTTHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCcCcCCcchHHHHHHHHHHHhcCCEEEEecCCcEEE-CCCeEEEeCCC-ChHhcceeccchHHHHHHHHHHhccc
Confidence 41 111 22444455554556667777777664 56667777776 34555779999887765555555546
Q ss_pred CHHHHHHHHHHH
Q 018120 313 SLEECCKVGSCS 324 (360)
Q Consensus 313 ~l~~a~~~a~~a 324 (360)
+...+...|...
T Consensus 203 d~~~aa~~a~~~ 214 (246)
T PF02110_consen 203 DPLEAAVAAVAL 214 (246)
T ss_dssp SHHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 666665555443
No 79
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=98.51 E-value=6.6e-06 Score=71.11 Aligned_cols=154 Identities=22% Similarity=0.192 Sum_probs=103.0
Q ss_pred cccCCCcEEEEeecccC---HHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcC
Q 018120 166 EDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~---~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~ 242 (360)
+..+-++.++++.+.++ .+.+..+++.+++.+.|+++||.........++...+++.+.+++++++|..|...|.|.
T Consensus 51 e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~ 130 (265)
T COG2145 51 EFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAALAGE 130 (265)
T ss_pred HHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHHhcc
Confidence 44567788999955554 467778888999999999999986654434445556677765699999999999999864
Q ss_pred CC----------CCcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCC
Q 018120 243 EE----------NADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL 312 (360)
Q Consensus 243 ~~----------~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~ 312 (360)
.. ..+..++.+.+.+..+.+++-.|+.-.+. ++++.+.+..- ..-.-.-||+|+...|-..+.+....
T Consensus 131 ~~~~kGVDa~~~~~~~~~~a~~~A~~~~~vvvvTG~vD~Is-dg~~~~~i~nG-~pll~~ItGtGCllgav~aaF~av~~ 208 (265)
T COG2145 131 AGGGKGVDAGDGAADAIEAAKKAAQKYGTVVVVTGEVDYIS-DGTRVVVIHNG-SPLLGKITGTGCLLGAVVAAFLAVEK 208 (265)
T ss_pred cccccccccccchhhHHHHHHHHHHHhCcEEEEECCeeEEE-cCCeEEEEECC-CcHHhhhhccccHHHHHHHHHHhcCC
Confidence 31 12233444455554556777777766554 45566666554 23445678999887766666665555
Q ss_pred C-HHHHHHHH
Q 018120 313 S-LEECCKVG 321 (360)
Q Consensus 313 ~-l~~a~~~a 321 (360)
+ +.+|...|
T Consensus 209 d~~~~A~~~A 218 (265)
T COG2145 209 DPLLDAAAEA 218 (265)
T ss_pred CHHHHHHHHH
Confidence 6 34544443
No 80
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=98.40 E-value=1.2e-05 Score=70.88 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=103.3
Q ss_pred cccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCC-
Q 018120 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE- 244 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~- 244 (360)
+.++++|.++++.++-..+...++++...+...++++|-.......... .... ..-|+.|+..|+..|++...
T Consensus 63 ~~~~~~~av~iGPGlg~~~~~~~~~~~~~~~~~p~VlDADaL~~l~~~~----~~~~--~~~IlTPH~gE~~rL~~~~~~ 136 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDEETEELLEELLESDKPLVLDADALNLLAENP----KKRN--APVILTPHPGEFARLLGKSVE 136 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSHHHHHHHHHHHHHCSTEEEECHHHHCHHHCC----CCSS--SCEEEE-BHHHHHHHHTTTCH
T ss_pred hhhccCCEEEeecCCCCchhhHHHHHHHHhhcceEEEehHHHHHHHhcc----ccCC--CCEEECCCHHHHHHHhCCccc
Confidence 3467889999995443445555577777777888999995432211111 1222 67899999999999998764
Q ss_pred -CCcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 018120 245 -NADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSC 323 (360)
Q Consensus 245 -~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~ 323 (360)
.++..++.+.+.+..+.++|-.|..-.++..+++.+..+.- ..-.-+-|.||.+.|-+..-+.++.++.+|+..|+.
T Consensus 137 ~~~~~~~~a~~~a~~~~~~vvLKG~~t~I~~p~~~~~~n~~g--n~~la~gGsGDvLaGii~~llaq~~~~~~Aa~~av~ 214 (242)
T PF01256_consen 137 IQEDRIEAAREFAKEYGAVVVLKGAVTIIASPGGRVYVNPTG--NPGLATGGSGDVLAGIIAGLLAQGYDPFEAACLAVY 214 (242)
T ss_dssp HCCSHHHHHHHHHHHHTSEEEEESTSSEEEEETSEEEEE------GGGSSTTHHHHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhhcCcEEEEeCCCcEEEecCcceeEeCCC--CCCCCCCCcccHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 34444555555554456777788877777667776666554 345678899999998888888999999999998876
Q ss_pred Hhcchh
Q 018120 324 SGGSVI 329 (360)
Q Consensus 324 aaa~~v 329 (360)
.=+.+-
T Consensus 215 lHg~Ag 220 (242)
T PF01256_consen 215 LHGRAG 220 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 81
>PRK10565 putative carbohydrate kinase; Provisional
Probab=98.26 E-value=3.8e-05 Score=75.03 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=92.2
Q ss_pred cCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCC-
Q 018120 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA- 246 (360)
Q Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~- 246 (360)
++.+|.++++.++...+....+++.+++.+.++++|+........... .. ...|+.||..|+..|++....+
T Consensus 318 ~~~~~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDAdaL~ll~~~~~-----~~--~~~VLTPh~gE~~rL~~~~~~~v 390 (508)
T PRK10565 318 LEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALNLLAINPD-----KR--HNRVITPHPGEAARLLGCSVAEI 390 (508)
T ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEchHHHHHhhCcc-----cc--CCeEECCCHHHHHHHhCCChhhh
Confidence 467799999955444444456667777888999999965332211110 11 2579999999999999843211
Q ss_pred --cH-HHHHHHHHcCCCEEEEEeCCCceEEEEC-CEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHH
Q 018120 247 --DS-EAALEFLAKRCQWAVVTLGPNGCIAKHG-KEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGS 322 (360)
Q Consensus 247 --~~-~~~~~~l~~~~~~vivt~G~~G~~~~~~-~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~ 322 (360)
+. ..+.++.++. ..++|-.|..-. +.+. +..+..+.- ..-.-++|.||++.|.+.+.+.++.++.+|+..|+
T Consensus 391 ~~~~~~~a~~~a~~~-~~~vvlKG~~~i-I~~~~~~~~~~~~G--~~~ma~~GsGDvLaGiIaalla~g~~~~~Aa~~a~ 466 (508)
T PRK10565 391 ESDRLLSARRLVKRY-GGVVVLKGAGTV-IAAEPDALAIIDVG--NAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGC 466 (508)
T ss_pred hhhHHHHHHHHHHHh-CCEEEEeCCCcE-EEcCCceEEEECCC--CCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 2233333333 344444666443 4443 444444332 34456799999999988888888999988888887
Q ss_pred HH
Q 018120 323 CS 324 (360)
Q Consensus 323 ~a 324 (360)
..
T Consensus 467 ~l 468 (508)
T PRK10565 467 VA 468 (508)
T ss_pred HH
Confidence 44
No 82
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.15 E-value=2.9e-05 Score=67.13 Aligned_cols=162 Identities=20% Similarity=0.126 Sum_probs=98.3
Q ss_pred cccCCCcEEEEeeccc--CHHHHHHHHHHHHHC--CCeEEEeCC-----ChhHHHhhhHHHHHhhccCCccEEEcCHHHH
Q 018120 166 EDVKGSKWLVLRFGMF--NFEVIQAAIRIAKQE--GLSVSMDLA-----SFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~--~~~~~~~~~~~a~~~--~~~v~~d~~-----~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~ 236 (360)
..+..++.++.+|..- .-+.+.++++..|+. +...++||. ..+..+..-+...+++.. .+|++.||.-|+
T Consensus 77 nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~-ladiiTPNqFE~ 155 (308)
T KOG2599|consen 77 NNLNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIP-LADIITPNQFEA 155 (308)
T ss_pred ccccccceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcc-hhhhcCCcchhh
Confidence 3456889999885321 135566666666664 445668884 122233333444455542 599999999999
Q ss_pred HHhhcCC--CCCcHHHHHHHHH-cCCCEEEEEeCCC----ceEEE----ECC-EEEEeCCcCCCcccCCCCccHHhHHHH
Q 018120 237 AELVRGE--ENADSEAALEFLA-KRCQWAVVTLGPN----GCIAK----HGK-EIVKVPAIGEAKAIDATGAGDLFASGF 304 (360)
Q Consensus 237 ~~l~~~~--~~~~~~~~~~~l~-~~~~~vivt~G~~----G~~~~----~~~-~~~~~~~~~~~~vvdttGAGD~f~ag~ 304 (360)
+.|+|.. +.++.+++.+.+. ++.+.||||...- |..++ +.+ +.+.+.-+ ... --.||.||.|.|-+
T Consensus 156 EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ip-ki~-~~FtGTGDLfsaLL 233 (308)
T KOG2599|consen 156 EILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIP-KID-GVFTGTGDLFSALL 233 (308)
T ss_pred hhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEec-ccc-eEEecccHHHHHHH
Confidence 9999865 3344555555554 5799999997643 31122 222 33333322 221 23579999999988
Q ss_pred HHHHHcC---CCHHHHHHHHHHHhcchhc
Q 018120 305 LYGLVKG---LSLEECCKVGSCSGGSVIR 330 (360)
Q Consensus 305 ~~~l~~~---~~l~~a~~~a~~aaa~~v~ 330 (360)
++.+... .++..+++.+...--..++
T Consensus 234 la~~~~~~~~~~l~~a~e~~ls~~~~viq 262 (308)
T KOG2599|consen 234 LAWLHESPDNDDLSKAVEQVLSSVQAVIQ 262 (308)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHHH
Confidence 8777654 4677777766655444443
No 83
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=97.97 E-value=0.00031 Score=64.81 Aligned_cols=157 Identities=17% Similarity=0.069 Sum_probs=103.8
Q ss_pred CCcEEEEeecccC-HHHHHHHHHHHHHC-CCeEEEeCC------ChhHHHhhhH-HHHHhhccCCccEEEcCHHHHHHhh
Q 018120 170 GSKWLVLRFGMFN-FEVIQAAIRIAKQE-GLSVSMDLA------SFEMVRNFRT-PLLQLLESGDVDLCFANEDEAAELV 240 (360)
Q Consensus 170 ~~~~v~~~~~~~~-~~~~~~~~~~a~~~-~~~v~~d~~------~~~~~~~~~~-~l~~~l~~~~~dil~~n~~E~~~l~ 240 (360)
.++++-.+ +++ ++++.-+.+.+.+. -.++++||. +.-...++-+ ...++++ .+||+.+|.-|+-.|.
T Consensus 92 ~C~VvKTG--ML~~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P--~adiltPNI~Ea~~Ll 167 (523)
T KOG2598|consen 92 KCDVVKTG--MLPSPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLP--FADILTPNIPEAFILL 167 (523)
T ss_pred cccEEeec--CcCchHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhh--hHHHhCCChHHHHHHH
Confidence 34555443 444 44444444444443 457899983 1111112222 2345677 8999999999999999
Q ss_pred cCCC-----CCcHHH----HHHHHHcCCCEEEEEeCCCce-----------------EEEECCEEEEeCCcCCCcccCCC
Q 018120 241 RGEE-----NADSEA----ALEFLAKRCQWAVVTLGPNGC-----------------IAKHGKEIVKVPAIGEAKAIDAT 294 (360)
Q Consensus 241 ~~~~-----~~~~~~----~~~~l~~~~~~vivt~G~~G~-----------------~~~~~~~~~~~~~~~~~~vvdtt 294 (360)
+... ..+..+ +..+.+.+++.|+|+-|.-.. ++|.+.+.++++.+ ..+-..+-
T Consensus 168 ~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~-~~~t~~tH 246 (523)
T KOG2598|consen 168 KKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSP-YLATKHTH 246 (523)
T ss_pred hhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEeccc-cccccccc
Confidence 8531 223333 233445588999999774221 24456667777777 57788999
Q ss_pred CccHHhHHHHHHHHHcCCCHHHHHHHHHHHhcchhcc
Q 018120 295 GAGDLFASGFLYGLVKGLSLEECCKVGSCSGGSVIRS 331 (360)
Q Consensus 295 GAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa~~v~~ 331 (360)
|.|.++.++++.-|+.|+++.+|++.|...--.+++.
T Consensus 247 GtgCtLaSAIASnLA~g~sl~qAv~~ai~yvq~Ai~~ 283 (523)
T KOG2598|consen 247 GTGCTLASAIASNLARGYSLLQAVQGAIEYVQNAIAI 283 (523)
T ss_pred CccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998776665554
No 84
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.00032 Score=60.51 Aligned_cols=164 Identities=14% Similarity=0.148 Sum_probs=110.3
Q ss_pred ccccCCCcEEEEeecc-cCH---HHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhh
Q 018120 165 AEDVKGSKWLVLRFGM-FNF---EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (360)
Q Consensus 165 ~~~~~~~~~v~~~~~~-~~~---~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~ 240 (360)
++.+.+-.+++++.++ ..+ ..+..+++.++.+++++++|....+...+..+.+..-. ..-|+.||.-|+..|+
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~---~~viLTPNvvEFkRLc 172 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGY---PKVILTPNVVEFKRLC 172 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccC---ceeeeCCcHHHHHHHH
Confidence 4467778899998332 333 56677888999999999999988776555444333322 3468899999999999
Q ss_pred cC--CCCCcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHH--H--cCCCH
Q 018120 241 RG--EENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGL--V--KGLSL 314 (360)
Q Consensus 241 ~~--~~~~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l--~--~~~~l 314 (360)
+. ...+...++..+..+-....+|-.|+.-.++..+++....+.. -.....=|-||...|.+...+ . ....+
T Consensus 173 d~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ils~~~ev~~~s~e--Gs~kRcGGQGDiLaGsla~fl~w~k~~~~e~ 250 (306)
T KOG3974|consen 173 DAELDKVDSHSQMQHLAAELMNVTVVQKGESDKILSPDSEVRVCSTE--GSLKRCGGQGDILAGSLATFLSWAKLLSGEQ 250 (306)
T ss_pred HHhhccccchHHHHHHHHHhcCeEEEEecCCceeeCCCCeeEEccCC--CCccccCCCcchhhhHHHHHHHHHHhccCCc
Confidence 86 3334455566666555678889999888766555554444432 334556689999988665432 2 33455
Q ss_pred HHHHHHHHHHhcchhcccC
Q 018120 315 EECCKVGSCSGGSVIRSLG 333 (360)
Q Consensus 315 ~~a~~~a~~aaa~~v~~~G 333 (360)
.+++..|..+++..++..|
T Consensus 251 ~~~~~~a~~a~s~~vr~a~ 269 (306)
T KOG3974|consen 251 DSAAFLAAVAGSIMVRRAG 269 (306)
T ss_pred cchhhhhhhhhHHHHHHHH
Confidence 5777777777777666544
No 85
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.83 E-value=0.00086 Score=63.80 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=83.2
Q ss_pred ceEecCchHHHHHHHHHhhcCCce--EEEEeecCChhHHHHHHHHHh-CCCeec------eeee-------cCCCCeeEE
Q 018120 74 IKTIAGGSVTNTIRGLSVGFGVPC--GLIGAYGDDQQGQLFVSNMQF-SGVDVS------RLRM-------KRGPTGQCV 137 (360)
Q Consensus 74 ~~~~~GG~a~N~a~~la~~lG~~v--~~ig~vG~D~~g~~i~~~l~~-~gv~~~------~i~~-------~~~~t~~~~ 137 (360)
...+.||.|.-+|..|+. +|.++ .+.+.++. ...+.+.. .++-.- ++.. .+.++-.-+
T Consensus 97 ~~~rmGGqAgimAn~la~-lg~~~vV~~~p~lsk-----~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~ 170 (463)
T PRK03979 97 DEERMGGQAGIISNLLAI-LDLKKVIAYTPWLSK-----KQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINR 170 (463)
T ss_pred ceEEeCChHHHHHHHHHh-cCCceEEEeCCCCCH-----HHHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEE
Confidence 456899999999999998 99884 34344443 33444422 122211 0000 111233444
Q ss_pred EEEcCCCcee---------------eecccccccCCCc-ccCC---ccccCCCcEEEEe-ecccCH-----HH----H--
Q 018120 138 CLVDASGNRT---------------MRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFNF-----EV----I-- 186 (360)
Q Consensus 138 ~~~~~~g~r~---------------~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~-~~~~~~-----~~----~-- 186 (360)
++-.+.|.+- +..+...+..+.. +++. .+.-...|.+++| +-.+.. .. .
T Consensus 171 I~Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r 250 (463)
T PRK03979 171 IFEFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELKEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKR 250 (463)
T ss_pred EEEeCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhccccccccHHHHHHH
Confidence 4444444432 2222222222111 1111 1122569999999 332321 22 2
Q ss_pred -HHHHHHHH--HCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhc
Q 018120 187 -QAAIRIAK--QEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 187 -~~~~~~a~--~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
.+.++..+ ..++++-|..++.....-...-+..+++ ++|.+-+|+.|+..+..
T Consensus 251 ~~~~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp--~vDSlGmNE~ELa~l~~ 306 (463)
T PRK03979 251 AKEDIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILP--HVDSVGMDETEIANILN 306 (463)
T ss_pred HHHHHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhcc--ccccccCCHHHHHHHHH
Confidence 22222232 3478899999865432223333446777 89999999999987653
No 86
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.82 E-value=0.0062 Score=57.91 Aligned_cols=163 Identities=17% Similarity=0.098 Sum_probs=88.4
Q ss_pred CceEecCchHHHHHHHHHhhcCCceEE-EEeecCChhHHHHHHHHHhCCCeeceeee-------------cCCCCeeEEE
Q 018120 73 PIKTIAGGSVTNTIRGLSVGFGVPCGL-IGAYGDDQQGQLFVSNMQFSGVDVSRLRM-------------KRGPTGQCVC 138 (360)
Q Consensus 73 ~~~~~~GG~a~N~a~~la~~lG~~v~~-ig~vG~D~~g~~i~~~l~~~gv~~~~i~~-------------~~~~t~~~~~ 138 (360)
....+.||.|.-+|..|+. +|.++.+ .+.. .++..++.+...+|-.-...- ...+.-.-++
T Consensus 85 ~~~~rmGGnAgimAn~la~-lg~~~Vi~~~~~----lsk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~I 159 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLSE-LGASRVVPNVAV----PSKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFV 159 (453)
T ss_pred CceEEeCChHHHHHHHHHh-cCCceEEEcCCC----CCHHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEE
Confidence 4679999999999999998 9998644 3321 233444555333333221100 0112333333
Q ss_pred EEcCCCc---------------eeeecccccccCCCc-ccCC---ccccCCCcEEEEe-ecccC---------HHHHHHH
Q 018120 139 LVDASGN---------------RTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFN---------FEVIQAA 189 (360)
Q Consensus 139 ~~~~~g~---------------r~~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~-~~~~~---------~~~~~~~ 189 (360)
+-.+.|+ |-+..+...+..+.. +++. .+...+.|.+++| +-++. .+.+.++
T Consensus 160 fEy~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~ 239 (453)
T PRK14039 160 FDFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDS 239 (453)
T ss_pred EEeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHH
Confidence 3333444 222222222222211 1111 1223478999999 43331 2333333
Q ss_pred HHHHH-----HCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcC
Q 018120 190 IRIAK-----QEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (360)
Q Consensus 190 ~~~a~-----~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~ 242 (360)
.+..+ ..++++-+..++.....-.+.-+..+++ ++|.+-+|++|+..+...
T Consensus 240 ~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp--~VDSlGmNEqELa~l~~~ 295 (453)
T PRK14039 240 LAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAG--IVDSIGMNEDELAMLANL 295 (453)
T ss_pred HHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhc--ccccccCCHHHHHHHHHH
Confidence 33322 2457899999865433333444557777 999999999999988764
No 87
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.57 E-value=0.004 Score=59.09 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=84.1
Q ss_pred eEecCchHHHHHHHHHhhcCCceE--EEEeecCChhHHHHHHHHHhC-CCeece------eee-------cCCCCeeEEE
Q 018120 75 KTIAGGSVTNTIRGLSVGFGVPCG--LIGAYGDDQQGQLFVSNMQFS-GVDVSR------LRM-------KRGPTGQCVC 138 (360)
Q Consensus 75 ~~~~GG~a~N~a~~la~~lG~~v~--~ig~vG~D~~g~~i~~~l~~~-gv~~~~------i~~-------~~~~t~~~~~ 138 (360)
..+.||.|.-+|..|++ +|.++. +.+.++ +..++.+.+. ++-.-. +.. .+.++-.-++
T Consensus 85 ~~rmGGqAgimAn~la~-lg~~~vI~~~~~ls-----~~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I 158 (446)
T TIGR02045 85 YERMGGQAGIISNLLGR-LGLKKVIAYTPFLS-----KRQAEMFVATGNILYPVVENGKLVLKPPGEAYREGDPSKVNRI 158 (446)
T ss_pred eeeeCCHHHHHHHHHHh-cCCceEEEeCCCCC-----HHHHHHhCCcCceeeccccCCceeeccchhccCCCCCCceEEE
Confidence 36899999999999998 998852 333344 3344555443 222110 000 0112224444
Q ss_pred EEcCCCcee---------------eecccccccCCCcc----cCCccccCCCcEEEEe-ecccCH------------HHH
Q 018120 139 LVDASGNRT---------------MRPCLSNAVKIQAD----ELIAEDVKGSKWLVLR-FGMFNF------------EVI 186 (360)
Q Consensus 139 ~~~~~g~r~---------------~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~-~~~~~~------------~~~ 186 (360)
+-.+.|.+- ++.+...+..+... +..++.-+.+|.+++| +-.+.. +-.
T Consensus 159 ~Ey~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~ 238 (446)
T TIGR02045 159 FEFRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERA 238 (446)
T ss_pred EEeCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHH
Confidence 433444432 22222222111100 1112334678999999 333321 222
Q ss_pred HHHHHHHHH-CCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhh
Q 018120 187 QAAIRIAKQ-EGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (360)
Q Consensus 187 ~~~~~~a~~-~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~ 240 (360)
.+.++..+. .++++-|..++.....-...-+..+++ ++|.+-+|+.|+..+.
T Consensus 239 ~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp--~vDSlGMNE~ELa~ll 291 (446)
T TIGR02045 239 KEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFP--HVDSVGMDEAEIANVL 291 (446)
T ss_pred HHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhcc--ccccccCCHHHHHHHH
Confidence 333334333 678899999865433223334446777 8999999999998877
No 88
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.011 Score=53.26 Aligned_cols=150 Identities=21% Similarity=0.181 Sum_probs=88.0
Q ss_pred ccCCCcEEEEeecccCHHHHHHHHHHHHHCC-CeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCC
Q 018120 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (360)
Q Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~-~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~ 245 (360)
...++|.+++++++-..+...++++..-+.. .++++|.......... ...... .--|+.|+..|+..|++.+..
T Consensus 98 ~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~~p~ViDADaL~~la~~----~~~~~~-~~~VlTPH~gEf~rL~g~~~~ 172 (284)
T COG0063 98 LVERADAVVIGPGLGRDAEGQEALKELLSSDLKPLVLDADALNLLAEL----PDLLDE-RKVVLTPHPGEFARLLGTEVD 172 (284)
T ss_pred hhccCCEEEECCCCCCCHHHHHHHHHHHhccCCCEEEeCcHHHHHHhC----cccccC-CcEEECCCHHHHHHhcCCccc
Confidence 3467889999954444444555555555555 8999999653221111 111211 237899999999999984321
Q ss_pred ---CcHHHHHHHHHcCCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCC-CHHHHHHHH
Q 018120 246 ---ADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGL-SLEECCKVG 321 (360)
Q Consensus 246 ---~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~-~l~~a~~~a 321 (360)
.+..++.+.+.+..+.+||-.|..-.+...+++.+..+.- ..-.-+=|.||++.|-+.+-+.++. +..+|+..|
T Consensus 173 ~~~~~r~~~a~~~a~~~~~vvVLKG~~tvI~~~~g~~~~n~~G--~~~ma~GGtGDvLaGii~alLAq~~~~~~~Aa~~g 250 (284)
T COG0063 173 EIEVDRLEAARELAAKYGAVVVLKGAVTVIADPDGEVFVNPTG--NPGMATGGTGDVLAGIIGALLAQGPADPLEAAAAG 250 (284)
T ss_pred ccccchHHHHHHHHHHcCCEEEEeCCCCEEEcCCCcEEEcCCC--CHHhccCcchHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 2334455555556677788888777766534344443332 2334455899998765555555551 344555555
Q ss_pred HH
Q 018120 322 SC 323 (360)
Q Consensus 322 ~~ 323 (360)
+.
T Consensus 251 ~~ 252 (284)
T COG0063 251 AW 252 (284)
T ss_pred HH
Confidence 43
No 89
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=96.99 E-value=0.13 Score=49.18 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=86.0
Q ss_pred ceEecCchHHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeec------------CCCCeeEEEEEc
Q 018120 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK------------RGPTGQCVCLVD 141 (360)
Q Consensus 74 ~~~~~GG~a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~------------~~~t~~~~~~~~ 141 (360)
...+.||.|.-+|..++.+.|.+| ++.++.. .+.-.+.+...+|-.-.+.-. ..+.-.-+++-.
T Consensus 105 ~~~rmGGnAgimAn~la~~~g~~V--ia~~~~l--sk~qa~lf~~~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~Ey 180 (453)
T PRK14038 105 DELRMGGQVGIMANLLGGVYGVPV--IAHVPQL--SKLQASLFLDGPIYVPTFEGGELKLVHPREFVGDEENCIHYIYEF 180 (453)
T ss_pred ceEEeCChHHHHHHHHHhhcCCce--EEECCCc--chhhHhhccCCCEEeccccCCcceeccchhcccCCCCccEEEEEe
Confidence 368999999999999985367776 5555532 111112222222321110000 011222233333
Q ss_pred CCCc-----------eeeecccccccCCC-cccCC---ccccCCCcEEEEe-ecccCHHHHHH-------HHHHHHHCCC
Q 018120 142 ASGN-----------RTMRPCLSNAVKIQ-ADELI---AEDVKGSKWLVLR-FGMFNFEVIQA-------AIRIAKQEGL 198 (360)
Q Consensus 142 ~~g~-----------r~~~~~~~~~~~~~-~~~~~---~~~~~~~~~v~~~-~~~~~~~~~~~-------~~~~a~~~~~ 198 (360)
+.|. |-+..+...+..+. .+++. .+...+.|.+++| +-.+......+ .++..+..++
T Consensus 181 ~~G~~~~~~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i 260 (453)
T PRK14038 181 PRGFRVFDFEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGI 260 (453)
T ss_pred CCCCEEeeeEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCc
Confidence 3333 33333332232221 11111 1334689999999 43333222222 2222234578
Q ss_pred eEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhc
Q 018120 199 SVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 199 ~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
++-++..+.. ....++.+.++++ .+|-+-+|++|+..+..
T Consensus 261 ~iH~EfAs~~-d~~~r~~i~~ilp--~vDSlGmNE~ELa~ll~ 300 (453)
T PRK14038 261 PAHLEFAFTP-DETVREEILGLLG--KFYSVGLNEVELASIME 300 (453)
T ss_pred eEEEEeeccc-hHHHHHHHHhhCc--cccccccCHHHHHHHHH
Confidence 8889987532 2346677778888 89999999999988875
No 90
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=96.99 E-value=0.005 Score=59.24 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=76.5
Q ss_pred eEecCchHHHHHHHHHhhcC-CceEEEEeecCChhHHHHHHHHHhCCCeecee--------eec----C-CCCeeEEEEE
Q 018120 75 KTIAGGSVTNTIRGLSVGFG-VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL--------RMK----R-GPTGQCVCLV 140 (360)
Q Consensus 75 ~~~~GG~a~N~a~~la~~lG-~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i--------~~~----~-~~t~~~~~~~ 140 (360)
..+.||+|.-+|..||. ++ .+|.+.+.++. +.+++.| ..+|-.-.+ ... + .+.-.-+++-
T Consensus 91 ~~r~GGnA~imAn~la~-l~~~~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlE 164 (444)
T PF04587_consen 91 EERMGGNAGIMANRLAN-LEGCPVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILE 164 (444)
T ss_dssp EEEEESHHHHHHHHHCC-TT-SEEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEE
T ss_pred ccccCchHHHHHHHHHh-CCCCEEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEE
Confidence 34699999999999997 65 45555554554 3344444 233322101 000 0 1233334443
Q ss_pred cCCCce-----------eeecccccccCCCc-ccCC---ccccCCCcEEEEe-ecccC-----H-------HHHHHHHHH
Q 018120 141 DASGNR-----------TMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFN-----F-------EVIQAAIRI 192 (360)
Q Consensus 141 ~~~g~r-----------~~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~-~~~~~-----~-------~~~~~~~~~ 192 (360)
.+.|++ -++.+...+..+.. +++. .+...+.|.++++ +-++. . +.+.+.++.
T Consensus 165 y~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~ 244 (444)
T PF04587_consen 165 YKKGEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKL 244 (444)
T ss_dssp E-TTEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHH
T ss_pred cCCCCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHh
Confidence 344532 22222222222221 1111 1234679999999 43332 1 222333334
Q ss_pred HH-HCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhc
Q 018120 193 AK-QEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 193 a~-~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
.+ ..+++|-|..++..-..-.+.-+..+++ ++|.+-+|++|+..+..
T Consensus 245 l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp--~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 245 LKSNPDIPIHLELASFADEELRKEILEKILP--HVDSLGMNEQELANLLS 292 (444)
T ss_dssp HH-HTT-EEEEE----SSHHHHHHHHHHHGG--GSSEEEEEHHHHHHHHH
T ss_pred ccCCCCCceEEEeccccCHHHHHHHHHHhhc--cccccccCHHHHHHHHH
Confidence 44 5789999999864332223334447888 99999999999998754
No 91
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=95.82 E-value=0.11 Score=49.82 Aligned_cols=162 Identities=17% Similarity=0.046 Sum_probs=87.5
Q ss_pred CceEecCchHHHHHHHHHhhcCC-ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCc------
Q 018120 73 PIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGN------ 145 (360)
Q Consensus 73 ~~~~~~GG~a~N~a~~la~~lG~-~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~------ 145 (360)
....+.||+|.-+|..++. +|. +|.+.+.+... .....+...+|-.-.......+.-.-+++-.+.|+
T Consensus 100 ~~~~~mGGnAgimAn~la~-~g~~~Vil~~p~~~k----~~~~L~~d~~i~~p~~e~~~~~d~IHlIlEy~~G~~~~~~~ 174 (445)
T cd01938 100 WDELRMGGNAGLMANRLAG-EGDLKVLLGVPQSSK----LQAELFLDGPIVVPTFENLIEEDEIHLILEYPRGESWGDFV 174 (445)
T ss_pred CceEEeCChHHHHHHHHHh-cCCceEEEecCCCcH----HHHHhCCCCCeeecccccCCCCCccEEEEEcCCCCEecceE
Confidence 3579999999999999998 998 77776665442 22222222222221111001123333333333443
Q ss_pred -----eeeecccccccCCCcccCCccccC-CCcEEEEe-ecccC-----HHHHHHHHHHHHH------CCCeEEEeCCCh
Q 018120 146 -----RTMRPCLSNAVKIQADELIAEDVK-GSKWLVLR-FGMFN-----FEVIQAAIRIAKQ------EGLSVSMDLASF 207 (360)
Q Consensus 146 -----r~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~-----~~~~~~~~~~a~~------~~~~v~~d~~~~ 207 (360)
|-+..+...+.....+++.....+ +.|.+++| +-++. .....+.++.+++ ..+++-|.+++.
T Consensus 175 aPraNRfI~~~d~~n~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~ 254 (445)
T cd01938 175 APRANRFIFHDDDNNPMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAST 254 (445)
T ss_pred cCCCCeEEEecCCcchhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEeccc
Confidence 333333222221122222222333 38999999 33221 2344444444332 347888998765
Q ss_pred hHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhc
Q 018120 208 EMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 208 ~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
.-..-.+.-+..+++ ++|-+-+|+.|+..+..
T Consensus 255 ~d~~l~~~i~~~ilp--~VDSlGmNEqEL~~l~~ 286 (445)
T cd01938 255 VDEELREEILHEVVP--YVDSLGLNEQELANLLQ 286 (445)
T ss_pred ccHHHHHHHHHHhcc--cccccccCHHHHHHHHH
Confidence 433233344446777 89999999999988764
No 92
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=86.70 E-value=4.8 Score=36.95 Aligned_cols=212 Identities=17% Similarity=0.115 Sum_probs=102.8
Q ss_pred CeEEEecCCeeEEEEeecCHhHHhhCCCCC---CCccccC-HHHHHHHHhhhcccCC-------------------CCCC
Q 018120 16 ALILGLQPAALIDHVARVDWSLLDQIPGER---GGSIPVA-IEELEHILSEVKTHIL-------------------DEPS 72 (360)
Q Consensus 16 ~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~---g~~~~~~-~~~~~~l~~~~~~~~~-------------------~~~~ 72 (360)
..++++| +++|.++.. -+|+++|.... |...++. ..++-.-++..-..+. ..-.
T Consensus 60 K~~IG~~--~~~DL~in~-~~~lD~~~~a~a~~~~r~~v~~~~eL~QsFA~~FQ~GAAAER~Man~~~F~v~~Ak~~~~~ 136 (478)
T KOG4184|consen 60 KVAIGYG--ACTDLQINA-TEFLDRYYVAAATTGSRAVVNNEDELLQSFAYYFQNGAAAERVMANSTLFTVGYAKVMDKE 136 (478)
T ss_pred cceeecc--cceeeEech-hhHHHHHHHHhhccCcHHhhhhHHHHHHHHHHHHhcchHHhhhhcccchhhhhhhhhhhhh
Confidence 3356665 899999985 56888887521 2211121 2222111111100000 0112
Q ss_pred CceEecCchHHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCcee-eecc
Q 018120 73 PIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT-MRPC 151 (360)
Q Consensus 73 ~~~~~~GG~a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~-~~~~ 151 (360)
+...+.||++.-+|.-... -| .+.++|..|.-.....+-+. +.+..-.+..+. .-+++-.+.|+.- -+..
T Consensus 137 R~~~~mGGNA~LMA~R~~~-~~-~~~LlG~~~~R~~~~L~P~~-----~R~~~~~I~~Dd--iHlILEYK~Gd~~G~~VA 207 (478)
T KOG4184|consen 137 RINWYMGGNAPLMAVRFFM-EG-AQVLLGAHMSRKLRPLLPKE-----IRLAGDEIPNDD--IHLILEYKAGDKWGPYVA 207 (478)
T ss_pred hhhhhccCCchHHHHHHHh-cc-ceeeecccccchhccccchh-----hhcccCcCcCCc--eEEEEEeccCCccccccc
Confidence 5778999999988888875 45 67799998874332222222 222211111111 1222222233211 1111
Q ss_pred cccccCCCcccCC----------cc--ccCCCcEEEEeec-cc---CHHHHHHHHHHHH----H--CCCeEEEeCCChhH
Q 018120 152 LSNAVKIQADELI----------AE--DVKGSKWLVLRFG-MF---NFEVIQAAIRIAK----Q--EGLSVSMDLASFEM 209 (360)
Q Consensus 152 ~~~~~~~~~~~~~----------~~--~~~~~~~v~~~~~-~~---~~~~~~~~~~~a~----~--~~~~v~~d~~~~~~ 209 (360)
+.++..+...+-. -+ ..-+.|.+++++. ++ +.+.-.+-++..+ + .|+++=+++.+..-
T Consensus 208 P~anR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~~ 287 (478)
T KOG4184|consen 208 PRANRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMTN 287 (478)
T ss_pred ccccceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHHH
Confidence 2222222211111 11 1346789999831 11 2222222222222 1 57788888876432
Q ss_pred HHhhhHHHHHhhccCCccEEEcCHHHHHHhhc
Q 018120 210 VRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 210 ~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
..-..+-....++ ++|=+-+|+.|+..|..
T Consensus 288 ~~l~~~i~h~VlP--yVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 288 RELMSSIVHQVLP--YVDSLGLNEQELLFLTQ 317 (478)
T ss_pred HHHHHHHHHHhhh--hccccCCCHHHHHHHHH
Confidence 2223333446788 99999999999987753
No 93
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=85.73 E-value=6.8 Score=33.83 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=47.7
Q ss_pred CCcEEEEee--cccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhc---cCCccEEEcCHHHHHHhhcCC
Q 018120 170 GSKWLVLRF--GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLE---SGDVDLCFANEDEAAELVRGE 243 (360)
Q Consensus 170 ~~~~v~~~~--~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~---~~~~dil~~n~~E~~~l~~~~ 243 (360)
+...|.+|+ ..+.++.+.++++.+++.|+.+.+|.+.... .+.+.++++ .-..|+=.++.+....++|..
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~----~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~ 112 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAP----ASKLLPLAKLCDEVLFDLKIMDATQARDVVKMN 112 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCC----HHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCC
Confidence 446888883 2356788999999999999999999987432 133444444 113344455677778888853
No 94
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=78.28 E-value=36 Score=30.37 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=47.3
Q ss_pred ccccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHH
Q 018120 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (360)
Q Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E 235 (360)
.....++|++++....++++.+.++++.++..|..+.+|..+. +.+...... .+|++-.|...
T Consensus 128 ~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~-------~E~~~A~~~-gadiIgin~rd 190 (260)
T PRK00278 128 EARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDE-------EELERALKL-GAPLIGINNRN 190 (260)
T ss_pred HHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHHc-CCCEEEECCCC
Confidence 3445788999999555678899999999999999999999753 333334443 78999887433
No 95
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=76.25 E-value=8.9 Score=29.61 Aligned_cols=94 Identities=10% Similarity=0.118 Sum_probs=52.9
Q ss_pred EEeec-CChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcC-CCceeeeccc--ccccCCCcccCCccccCCCcEEE
Q 018120 100 IGAYG-DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRPCL--SNAVKIQADELIAEDVKGSKWLV 175 (360)
Q Consensus 100 ig~vG-~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~-~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~ 175 (360)
++.+| ...-|..+.+.|.++ -+.+.+..... .. .|++.-.... .....+..++.+.+.+.+.|+++
T Consensus 2 V~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEH-PDFELVALVSS---------SRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHT-STEEEEEEEES---------TTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEE
T ss_pred EEEECCCCHHHHHHHHHHhcC-CCccEEEeeee---------ccccCCeeehhccccccccceeEeecchhHhhcCCEEE
Confidence 34556 555899999988873 33333221111 11 1221111110 01112223334456678999999
Q ss_pred EeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
+. .+.....++...+.+.|+ .++|.++.
T Consensus 72 ~a---~~~~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 72 LA---LPHGASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp E----SCHHHHHHHHHHHHHTTS-EEEESSST
T ss_pred ec---CchhHHHHHHHHHhhCCc-EEEeCCHH
Confidence 87 357788888888888887 78899874
No 96
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=73.64 E-value=14 Score=30.61 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=58.1
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHH---hhcCCCCC
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE---LVRGEENA 246 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~---l~~~~~~~ 246 (360)
+++++..++..++.+.+..+.+.++.+|+.++.||..+. +..|..+.+.+| .+--.+....++.. -.|.+ ..
T Consensus 22 d~~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~G--ekIRk~i~~~vp--~~khafi~~~~a~~~~~~iGVE-~A 96 (174)
T TIGR00334 22 DVDVIETNGSALKDETINLIKKAQKKQGVIILTDPDFPG--EKIRKKIEQHLP--GYENCFIPKHLAKPNKKKIGVE-EA 96 (174)
T ss_pred CceEEEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCch--HHHHHHHHHHCC--CCeEEeeeHHhcCcCCCCcccC-CC
Confidence 467777776666888888888888889999999997654 367777888777 67777777777642 12222 33
Q ss_pred cHHHHHHHHHc
Q 018120 247 DSEAALEFLAK 257 (360)
Q Consensus 247 ~~~~~~~~l~~ 257 (360)
++++..+.|..
T Consensus 97 s~e~I~~AL~~ 107 (174)
T TIGR00334 97 SVEAIIAALEN 107 (174)
T ss_pred CHHHHHHHHHH
Confidence 45666666654
No 97
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=72.34 E-value=42 Score=29.95 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=52.7
Q ss_pred CCcEEEEeec--ccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEE-----cCHHHHHHhhcC
Q 018120 170 GSKWLVLRFG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF-----ANEDEAAELVRG 242 (360)
Q Consensus 170 ~~~~v~~~~~--~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~-----~n~~E~~~l~~~ 242 (360)
..+.|.++++ .+..+.+.++++.+++.|..+.+|.+.... ++.+.++++ ..|.+. .+++-.+.+++.
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~----~~~~~~l~~--~~D~v~~DlK~~~~~~y~~~tg~ 156 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLP----PEALEELLP--LLDAVLLDLKAFDDELYRKLTGA 156 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCC----HHHHHHHHh--hcCeEEEeeccCChHHHHHHhCC
Confidence 6788999843 345799999999999999999999987432 222234444 445443 355557888876
Q ss_pred CCCCcHHHHHHHHHc
Q 018120 243 EENADSEAALEFLAK 257 (360)
Q Consensus 243 ~~~~~~~~~~~~l~~ 257 (360)
.. +...+..+.+.+
T Consensus 157 ~~-~~vl~~~~~l~~ 170 (260)
T COG1180 157 DN-EPVLENLELLAD 170 (260)
T ss_pred Cc-HHHHHHHHHHHc
Confidence 54 233344445544
No 98
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.73 E-value=10 Score=28.02 Aligned_cols=79 Identities=10% Similarity=0.204 Sum_probs=55.1
Q ss_pred eecC-ChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEEEeecc
Q 018120 102 AYGD-DQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM 180 (360)
Q Consensus 102 ~vG~-D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 180 (360)
.||. +..-..+++.+++.|....+. + . +++.... ...-+..+.++|+|++-...
T Consensus 4 iVGG~~~~~~~~~~~~~~~G~~~~~h----g--------~-~~~~~~~------------~~~l~~~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 4 IVGGREDRERRYKRILEKYGGKLIHH----G--------R-DGGDEKK------------ASRLPSKIKKADLVIVFTDY 58 (97)
T ss_pred EEcCCcccHHHHHHHHHHcCCEEEEE----e--------c-CCCCccc------------hhHHHHhcCCCCEEEEEeCC
Confidence 4665 457888899999998886543 0 0 1111110 00013467889999988677
Q ss_pred cCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 181 FNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 181 ~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
++..+...+-+.|++.++++++--+
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEECC
Confidence 7899999999999999999998774
No 99
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=67.23 E-value=45 Score=32.21 Aligned_cols=123 Identities=19% Similarity=0.190 Sum_probs=66.4
Q ss_pred ceEecCchHHHHHHHHHhhcCCceEEEEeecCChhH---HHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeec
Q 018120 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (360)
Q Consensus 74 ~~~~~GG~a~N~a~~la~~lG~~v~~ig~vG~D~~g---~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~ 150 (360)
.-...+|.+++.+..++. ++.--.++. ..+.|+ ..+...++..|+++.++.. +
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~--------------~------- 134 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNP--------------N------- 134 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECC--------------C-------
Confidence 456778888877766654 532212222 233454 4444557888887765521 0
Q ss_pred ccccccCCCcccCCccccCCCcEEEEe-eccc--CHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCcc
Q 018120 151 CLSNAVKIQADELIAEDVKGSKWLVLR-FGMF--NFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVD 227 (360)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~--~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~d 227 (360)
++++.+....-++.++|++. ++.. ..--+.++.+.|+++|+.+++|-.-. .+.+.+.+.+ .+|
T Consensus 135 -------~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~-GAD 200 (432)
T PRK06702 135 -------LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEH-GAN 200 (432)
T ss_pred -------CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCC------chhhCChhhc-CCC
Confidence 11111111111345667776 2210 11147888999999999999999631 1333344443 577
Q ss_pred EEEcCHH
Q 018120 228 LCFANED 234 (360)
Q Consensus 228 il~~n~~ 234 (360)
|++-+..
T Consensus 201 Ivv~S~T 207 (432)
T PRK06702 201 IIVHSTT 207 (432)
T ss_pred EEEEccc
Confidence 7766543
No 100
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=66.57 E-value=69 Score=27.58 Aligned_cols=91 Identities=23% Similarity=0.240 Sum_probs=55.1
Q ss_pred CCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEc--CHHHHHHhhcCCC-C
Q 018120 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA--NEDEAAELVRGEE-N 245 (360)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~--n~~E~~~l~~~~~-~ 245 (360)
..+||+.+. +..+.+++..+++.|+++|..+.+|+-..+........+.++ .+|++.. +.+. + ..|... .
T Consensus 79 aGAd~~tV~-g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~----gvd~~~~H~g~D~-q-~~G~~~~~ 151 (217)
T COG0269 79 AGADWVTVL-GAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKEL----GVDQVILHRGRDA-Q-AAGKSWGE 151 (217)
T ss_pred cCCCEEEEE-ecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHh----CCCEEEEEecccH-h-hcCCCccH
Confidence 578899888 344789999999999999999999997654222222333332 5676666 3332 2 245432 2
Q ss_pred CcHHHHHHHHHcCCCEEEEEeC
Q 018120 246 ADSEAALEFLAKRCQWAVVTLG 267 (360)
Q Consensus 246 ~~~~~~~~~l~~~~~~vivt~G 267 (360)
++.....++...+ -.+-||=|
T Consensus 152 ~~l~~ik~~~~~g-~~vAVaGG 172 (217)
T COG0269 152 DDLEKIKKLSDLG-AKVAVAGG 172 (217)
T ss_pred HHHHHHHHhhccC-ceEEEecC
Confidence 3344444444433 34555555
No 101
>PRK05967 cystathionine beta-lyase; Provisional
Probab=65.73 E-value=49 Score=31.55 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=28.2
Q ss_pred CCcEEEEee---cccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLRF---GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~~---~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|+++. ..+...-+.++.+.|+++|+.+++|-.
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence 456788882 223567788999999999999999986
No 102
>PRK06444 prephenate dehydrogenase; Provisional
Probab=60.51 E-value=50 Score=28.09 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=41.2
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 176 (360)
+.++|.- ...|+++.+.|++.|.... +.++|+|++
T Consensus 3 ~~iiG~~--G~mG~~~~~~~~~~g~~v~-------------------------------------------~~~~DlVil 37 (197)
T PRK06444 3 EIIIGKN--GRLGRVLCSILDDNGLGVY-------------------------------------------IKKADHAFL 37 (197)
T ss_pred EEEEecC--CcHHHHHHHHHHhCCCEEE-------------------------------------------ECCCCEEEE
Confidence 3445532 5699999999999986642 257899999
Q ss_pred eecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
+ .|...+.++++... .++.|.++.
T Consensus 38 a---vPv~~~~~~i~~~~----~~v~Dv~Sv 61 (197)
T PRK06444 38 S---VPIDAALNYIESYD----NNFVEISSV 61 (197)
T ss_pred e---CCHHHHHHHHHHhC----CeEEecccc
Confidence 7 35666666665543 367899875
No 103
>PRK08114 cystathionine beta-lyase; Provisional
Probab=59.95 E-value=84 Score=29.99 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=54.8
Q ss_pred CceEecCchHHHHHHHHHhhcCC-ceEEEEeecCChhHHH---HHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceee
Q 018120 73 PIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQL---FVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM 148 (360)
Q Consensus 73 ~~~~~~GG~a~N~a~~la~~lG~-~v~~ig~vG~D~~g~~---i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~ 148 (360)
.....+.|.++..+..++. +.. +..+++ ++.+|.. +.+.+++.||++.++... +.+ .+
T Consensus 79 ~a~~~~SGmaAi~~~~~~l-l~~GD~Vv~~---~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~-------------d~~-~l 140 (395)
T PRK08114 79 GCALYPCGAAAVANAILAF-VEQGDHVLMT---GTAYEPTQDFCSKILSKLGVTTTWFDPL-------------IGA-DI 140 (395)
T ss_pred eEEEEhHHHHHHHHHHHHH-cCCCCEEEEe---CCCcHHHHHHHHHHHHhcCcEEEEECCC-------------CHH-HH
Confidence 3566777888887766664 542 222333 3344433 345678889987664310 111 00
Q ss_pred ecccccccCCCcccCCccccCCCcEEEEe-ecc--cCHHHHHHHHHHHHHC--CCeEEEeCC
Q 018120 149 RPCLSNAVKIQADELIAEDVKGSKWLVLR-FGM--FNFEVIQAAIRIAKQE--GLSVSMDLA 205 (360)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~--~~~~~~~~~~~~a~~~--~~~v~~d~~ 205 (360)
. ..+ -++.++|+++ ... ....-+.++.+.++++ |+.+++|-.
T Consensus 141 ~------~~l---------~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT 187 (395)
T PRK08114 141 A------KLI---------QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNT 187 (395)
T ss_pred H------Hhc---------CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECC
Confidence 0 000 0134677777 211 1123466777888887 499999986
No 104
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=59.49 E-value=72 Score=29.66 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=51.8
Q ss_pred ceEEEEeecCChhHHHHHHHHHhCCCeeceeee--cCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcE
Q 018120 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~--~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (360)
++.++|.-|. -|..+.+.|.+.+.....+.. ..... |++.- ..+ ..+..++++...+++.|+
T Consensus 6 ~IaIvGATG~--vG~eLlrlL~~~~hP~~~l~~v~s~~~a----------G~~l~--~~~--~~l~~~~~~~~~~~~vD~ 69 (336)
T PRK05671 6 DIAVVGATGT--VGEALVQILEERDFPVGTLHLLASSESA----------GHSVP--FAG--KNLRVREVDSFDFSQVQL 69 (336)
T ss_pred EEEEEccCCH--HHHHHHHHHhhCCCCceEEEEEECcccC----------CCeec--cCC--cceEEeeCChHHhcCCCE
Confidence 4556666555 799999999965433322211 11112 22111 111 122233333333577898
Q ss_pred EEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
+++. .+......++..+.+.|+ .++|.++.
T Consensus 70 vFla---~p~~~s~~~v~~~~~~G~-~VIDlS~~ 99 (336)
T PRK05671 70 AFFA---AGAAVSRSFAEKARAAGC-SVIDLSGA 99 (336)
T ss_pred EEEc---CCHHHHHHHHHHHHHCCC-eEEECchh
Confidence 8886 246677788888888886 57899873
No 105
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=59.31 E-value=78 Score=29.45 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=52.9
Q ss_pred CCceEEEEeecCChhHHHHHHHHHhC--C-CeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCC
Q 018120 94 GVPCGLIGAYGDDQQGQLFVSNMQFS--G-VDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (360)
Q Consensus 94 G~~v~~ig~vG~D~~g~~i~~~l~~~--g-v~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 170 (360)
+.++.++|.-|- .|+.+.+.|.++ . .+...+ .+....|..+.+- ++ .+..+++++..+.+
T Consensus 4 ~~~vaIvGATG~--vG~ellrlL~~~~hP~~~l~~l-aS~~saG~~~~~~---~~-----------~~~v~~~~~~~~~~ 66 (336)
T PRK08040 4 GWNIALLGATGA--VGEALLELLAERQFPVGELYAL-ASEESAGETLRFG---GK-----------SVTVQDAAEFDWSQ 66 (336)
T ss_pred CCEEEEEccCCH--HHHHHHHHHhcCCCCceEEEEE-EccCcCCceEEEC---Cc-----------ceEEEeCchhhccC
Confidence 345666666555 799999999984 2 222222 2122233333321 11 11112222223356
Q ss_pred CcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
.|++++. .+.....++...+.+.|+ .++|.++.
T Consensus 67 ~Dvvf~a---~p~~~s~~~~~~~~~~g~-~VIDlS~~ 99 (336)
T PRK08040 67 AQLAFFV---AGREASAAYAEEATNAGC-LVIDSSGL 99 (336)
T ss_pred CCEEEEC---CCHHHHHHHHHHHHHCCC-EEEECChH
Confidence 7888886 356777888888877776 57899874
No 106
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=56.78 E-value=1.4e+02 Score=28.44 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=50.9
Q ss_pred CCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccc--cCCC
Q 018120 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAED--VKGS 171 (360)
Q Consensus 94 G~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~ 171 (360)
|.+| ++..-| .||+++.+.++.+|.+...+....+ + .++++++.... -++.
T Consensus 80 gdkV-Lv~~nG--~FG~R~~~ia~~~g~~v~~~~~~wg-------------~-----------~v~p~~v~~~L~~~~~~ 132 (383)
T COG0075 80 GDKV-LVVVNG--KFGERFAEIAERYGAEVVVLEVEWG-------------E-----------AVDPEEVEEALDKDPDI 132 (383)
T ss_pred CCeE-EEEeCC--hHHHHHHHHHHHhCCceEEEeCCCC-------------C-----------CCCHHHHHHHHhcCCCc
Confidence 4444 444544 4999999999999999876654322 1 11222222111 1223
Q ss_pred cEEEEe---ecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 172 KWLVLR---FGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 172 ~~v~~~---~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
+.|.+. .+.--..-+.++.+.++++|..+++|.-+.
T Consensus 133 ~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS 171 (383)
T COG0075 133 KAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSS 171 (383)
T ss_pred cEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEeccc
Confidence 333333 211112466788888999999999999643
No 107
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=56.14 E-value=68 Score=30.27 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=53.8
Q ss_pred ceEEEEeecCChhHHHHHH-HHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccC-CccccCCCcE
Q 018120 96 PCGLIGAYGDDQQGQLFVS-NMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADEL-IAEDVKGSKW 173 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~-~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 173 (360)
++.++|.-|- .|+.+.+ .|++..+....+...... ..|.+... ..+. .....+. +.+.+.++|+
T Consensus 3 ~VAIVGATG~--vG~ell~llL~~~~f~~~~l~~~ss~---------~sg~~~~~-f~g~--~~~v~~~~~~~~~~~~Di 68 (369)
T PRK06598 3 KVGFVGWRGM--VGSVLMQRMVEENDFDLIEPVFFSTS---------QAGGAAPS-FGGK--EGTLQDAFDIDALKKLDI 68 (369)
T ss_pred EEEEEeCCCH--HHHHHHHHHHhCCCCCcCcEEEecch---------hhCCcccc-cCCC--cceEEecCChhHhcCCCE
Confidence 4555666554 7888887 888887764433321111 11111110 1111 1111111 1234577898
Q ss_pred EEEeecccCHHHHHHHHHHHHHCCCe-EEEeCCCh
Q 018120 174 LVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASF 207 (360)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~ 207 (360)
++++ .+.+...++...+.+.|.+ +++|.++.
T Consensus 69 vf~a---~~~~~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 69 IITC---QGGDYTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred EEEC---CCHHHHHHHHHHHHhCCCCeEEEECChH
Confidence 8886 2567888888888888884 89999864
No 108
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=55.46 E-value=76 Score=29.62 Aligned_cols=95 Identities=22% Similarity=0.280 Sum_probs=54.6
Q ss_pred cCCceEEEEeecCChhHHHHHHHHHhCCCeeceee--ecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCC
Q 018120 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR--MKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (360)
Q Consensus 93 lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~--~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 170 (360)
-..++.++|.-|. -|..+.+.|.+.+-....+. ......+..+.. .+ ..+..++++.+.+.+
T Consensus 6 ~~~kVaVvGAtG~--vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~---~~-----------~~~~v~~~~~~~~~~ 69 (344)
T PLN02383 6 NGPSVAIVGVTGA--VGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF---EG-----------RDYTVEELTEDSFDG 69 (344)
T ss_pred CCCeEEEEcCCCh--HHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee---cC-----------ceeEEEeCCHHHHcC
Confidence 3457777777776 79999999988543322221 111122222221 11 112233334345577
Q ss_pred CcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
+|++++. .+.+...++...+.+.|+ .++|.++.
T Consensus 70 ~D~vf~a---~p~~~s~~~~~~~~~~g~-~VIDlS~~ 102 (344)
T PLN02383 70 VDIALFS---AGGSISKKFGPIAVDKGA-VVVDNSSA 102 (344)
T ss_pred CCEEEEC---CCcHHHHHHHHHHHhCCC-EEEECCch
Confidence 8998886 245677777777777775 67899874
No 109
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=54.91 E-value=82 Score=29.44 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=56.0
Q ss_pred CCceEEEEeecCChhHHHHHHHHH-hCCCeeceeee--cCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCC
Q 018120 94 GVPCGLIGAYGDDQQGQLFVSNMQ-FSGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (360)
Q Consensus 94 G~~v~~ig~vG~D~~g~~i~~~l~-~~gv~~~~i~~--~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 170 (360)
+.++.++|.-|- .|+.+.+.|. +..+....+.. +....|..+.+. ++ .+..+.++.+.+++
T Consensus 5 ~~~VaIvGATG~--vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~---~~-----------~l~v~~~~~~~~~~ 68 (347)
T PRK06728 5 GYHVAVVGATGA--VGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFK---GR-----------EIIIQEAKINSFEG 68 (347)
T ss_pred CCEEEEEeCCCH--HHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeC---Cc-----------ceEEEeCCHHHhcC
Confidence 346667776665 7999999999 46677443221 122233333221 11 12223333344567
Q ss_pred CcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
.|++++. .+.+...++...+.+.| .+++|.++.
T Consensus 69 ~Divf~a---~~~~~s~~~~~~~~~~G-~~VID~Ss~ 101 (347)
T PRK06728 69 VDIAFFS---AGGEVSRQFVNQAVSSG-AIVIDNTSE 101 (347)
T ss_pred CCEEEEC---CChHHHHHHHHHHHHCC-CEEEECchh
Confidence 8988886 25677788888887777 477899863
No 110
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=53.63 E-value=1.7e+02 Score=27.18 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=53.6
Q ss_pred CceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCccc--CCccccCCCc
Q 018120 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE--LIAEDVKGSK 172 (360)
Q Consensus 95 ~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~--~~~~~~~~~~ 172 (360)
.++.++|.-|. .|+.+.+.|++.......+..-.. ....|++...+. +.. +...+ .+....++.|
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~AS--------~rSaG~~~~~f~-~~~--~~v~~~~~~~~~~~~~D 68 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEERHFPFEELVLLAS--------ARSAGKKYIEFG-GKS--IGVPEDAADEFVFSDVD 68 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHhcCCCcceEEEEec--------ccccCCcccccc-Ccc--ccCccccccccccccCC
Confidence 35677777776 899999999997666553322111 011233211110 000 11111 2223455789
Q ss_pred EEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCC
Q 018120 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (360)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 206 (360)
+++++. ..+...++...+.+.|+ +++|-++
T Consensus 69 ivf~~a---g~~~s~~~~p~~~~~G~-~VIdnsS 98 (334)
T COG0136 69 IVFFAA---GGSVSKEVEPKAAEAGC-VVIDNSS 98 (334)
T ss_pred EEEEeC---chHHHHHHHHHHHHcCC-EEEeCCc
Confidence 999882 24666888888889884 5667765
No 111
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=53.21 E-value=1.4e+02 Score=25.93 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=74.1
Q ss_pred cCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCc
Q 018120 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENAD 247 (360)
Q Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~ 247 (360)
+.++|+++.- .+.|+...++.+.+++.|.+.++-++.... ...+..+.+.+....+++.++. -+..|-. ..
T Consensus 49 i~~~Dl~I~y--~lHPDl~~~l~~~~~e~g~kavIvp~~~~~-~g~~~~lk~~~e~~gi~~~~P~--~~CsL~~----~~ 119 (217)
T PF02593_consen 49 IPEADLLIAY--GLHPDLTYELPEIAKEAGVKAVIVPSESPK-PGLRRQLKKQLEEFGIEVEFPK--PFCSLEE----NG 119 (217)
T ss_pred CCCCCEEEEe--ccCchhHHHHHHHHHHcCCCEEEEecCCCc-cchHHHHHHHHHhcCceeecCc--cccccCC----CC
Confidence 8889988863 357899999999999999888777754221 2334455555542234666553 2222211 01
Q ss_pred HHHHHHHHHc-CCCEEEEEeCCCceEEEECCEEEEeCCcCCCcccCCCCccHHhHHHHHHHHHcCCCHHHHHHHHHHHhc
Q 018120 248 SEAALEFLAK-RCQWAVVTLGPNGCIAKHGKEIVKVPAIGEAKAIDATGAGDLFASGFLYGLVKGLSLEECCKVGSCSGG 326 (360)
Q Consensus 248 ~~~~~~~l~~-~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~ag~~~~l~~~~~l~~a~~~a~~aaa 326 (360)
.....++++. |.+.+=|... + +... .++|+-..=||- .-|++--+.|.+++++-..+ +
T Consensus 120 ~p~i~~F~~~fGkP~~ei~v~-~-------~~I~------~V~VlR~aPCGs---T~~vAk~l~G~~~~d~~~~~----g 178 (217)
T PF02593_consen 120 NPQIDEFAEYFGKPKVEIEVE-N-------GKIK------DVKVLRSAPCGS---TWFVAKRLIGKEVEDAPEKA----G 178 (217)
T ss_pred ChhHHHHHHHhCCceEEEEec-C-------CcEE------EEEEEecCCCcc---HHHHHHHhcCCccchhhhhh----h
Confidence 1222233332 4344333332 2 2221 233333333443 33666778888888887776 4
Q ss_pred chhcccCC
Q 018120 327 SVIRSLGG 334 (360)
Q Consensus 327 ~~v~~~G~ 334 (360)
..++++-+
T Consensus 179 ~~~q~YPC 186 (217)
T PF02593_consen 179 LAHQHYPC 186 (217)
T ss_pred hhheeccc
Confidence 45555433
No 112
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=52.89 E-value=1.1e+02 Score=28.24 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=52.0
Q ss_pred CceEEEEeecCChhHHHHHHHHHhCCCee---ceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCC
Q 018120 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDV---SRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (360)
Q Consensus 95 ~~v~~ig~vG~D~~g~~i~~~l~~~gv~~---~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (360)
.++.++|.-|. -|+.+.+.|.+++-.. ..+... ...+..+.+ ++. .+ ...++....+.+.
T Consensus 2 ~~V~IvGAtG~--vG~~l~~lL~~~~hp~~~l~~l~s~-~~~g~~l~~---~g~-~i----------~v~d~~~~~~~~v 64 (334)
T PRK14874 2 YNVAVVGATGA--VGREMLNILEERNFPVDKLRLLASA-RSAGKELSF---KGK-EL----------KVEDLTTFDFSGV 64 (334)
T ss_pred CEEEEECCCCH--HHHHHHHHHHhCCCCcceEEEEEcc-ccCCCeeee---CCc-ee----------EEeeCCHHHHcCC
Confidence 35666776665 7999999999865433 333222 122222221 121 11 1112222234578
Q ss_pred cEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 172 ~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
|++++. .+.....++.....+.|+ +++|+++.
T Consensus 65 DvVf~A---~g~g~s~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 65 DIALFS---AGGSVSKKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred CEEEEC---CChHHHHHHHHHHHhCCC-EEEECCch
Confidence 988886 245566677777767777 88999874
No 113
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=51.93 E-value=78 Score=25.47 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=42.9
Q ss_pred CcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHH
Q 018120 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (360)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~ 236 (360)
.+.|.++++.+..+.+.++++.+++.|..+.++.+.. +.+...++++ .+|+++...-+.
T Consensus 62 ~~gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~-----~~~~~~~il~--~iD~l~~g~y~~ 120 (147)
T TIGR02826 62 ISCVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLE-----PKDIPLELVQ--HLDYLKTGRWIH 120 (147)
T ss_pred CCEEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCC-----CHHHHHHHHH--hCCEEEEChHHH
Confidence 3568888433677889999999999999999998642 2223445666 899999887543
No 114
>PRK09028 cystathionine beta-lyase; Provisional
Probab=51.80 E-value=1.2e+02 Score=28.94 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=27.5
Q ss_pred CCcEEEEee---cccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLRF---GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~~---~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|+++. ......-+.++++.|+++|+.+++|-.
T Consensus 146 ~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t 184 (394)
T PRK09028 146 NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNT 184 (394)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 467888882 222356778899999999999999985
No 115
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=50.88 E-value=91 Score=29.58 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCeEEEeCC
Q 018120 186 IQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 186 ~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++.+.|+++|+.+++|-.
T Consensus 165 l~~I~~la~~~gi~livD~t 184 (390)
T PRK08133 165 IAALAEIAHAAGALLVVDNC 184 (390)
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 57788888899999999985
No 116
>PRK07050 cystathionine beta-lyase; Provisional
Probab=49.64 E-value=1.4e+02 Score=28.45 Aligned_cols=103 Identities=11% Similarity=-0.016 Sum_probs=56.4
Q ss_pred CceEecCchHHHHHHHHHhhcCC-ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecc
Q 018120 73 PIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPC 151 (360)
Q Consensus 73 ~~~~~~GG~a~N~a~~la~~lG~-~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~ 151 (360)
..-..+||..++.+...+. ++. +..++..-.-...-..+...++..|+++.++... +.+
T Consensus 82 ~~l~~~sgt~Ai~~~l~al-~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-------------~~~------ 141 (394)
T PRK07050 82 HALLQPSGLAAISLVYFGL-VKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-------------IGA------ 141 (394)
T ss_pred eEEEeccHHHHHHHHHHHH-hCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC-------------CHH------
Confidence 4566788888887766554 432 2223322221112222334566778876654210 000
Q ss_pred cccccCCCcccCCccccCCCcEEEEe-e--cccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 152 LSNAVKIQADELIAEDVKGSKWLVLR-F--GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~--~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
.+....-++.++|+++ . ......-+.++.+.|+++|+.+++|-.
T Consensus 142 ----------~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 142 ----------GIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred ----------HHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECC
Confidence 0000001245677776 2 223567788889999999999999986
No 117
>PRK05968 hypothetical protein; Provisional
Probab=48.96 E-value=1.7e+02 Score=27.71 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=27.6
Q ss_pred CCCcEEEEe---ecccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 169 KGSKWLVLR---FGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 169 ~~~~~v~~~---~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
.+.++|++. ...+...-+.++.+.++++|+.+++|-.
T Consensus 146 ~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a 185 (389)
T PRK05968 146 PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNS 185 (389)
T ss_pred ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 345677766 2233567788889999999999999985
No 118
>PHA00438 hypothetical protein
Probab=48.43 E-value=15 Score=25.72 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=15.0
Q ss_pred CCCCccHHhHHHHHHHHH
Q 018120 292 DATGAGDLFASGFLYGLV 309 (360)
Q Consensus 292 dttGAGD~f~ag~~~~l~ 309 (360)
.-.|..++|++||++|+-
T Consensus 45 R~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 45 RQAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HHcCCcHHHHHHHHHHHH
Confidence 346899999999999873
No 119
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=48.04 E-value=1.8e+02 Score=26.26 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=41.9
Q ss_pred cEEEEee--cccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEE-----cCHHHHHHhhcC
Q 018120 172 KWLVLRF--GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF-----ANEDEAAELVRG 242 (360)
Q Consensus 172 ~~v~~~~--~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~-----~n~~E~~~l~~~ 242 (360)
..|.+++ .++.++.+.++++.+++.|..+.++.++... .+.+.++++ ..|++. .+++....+.|.
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~----~~~~~~ll~--~~d~~~isl~~~~~~~~~~~~g~ 198 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTP----WETIEKVLP--YVDLFLFDIKHLDDERHKEVTGV 198 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCC----HHHHHHHHh--hCCEEEEeeccCChHHHHHHhCC
Confidence 4566663 2345777889999999999999999886422 234555555 556654 345555566553
No 120
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=47.56 E-value=31 Score=27.92 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=30.3
Q ss_pred chHHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeec
Q 018120 80 GSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (360)
Q Consensus 80 G~a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~ 124 (360)
++..|+++.++. +|....+|-.+|=+-.- +.|++.|.|..
T Consensus 14 ~NTGNI~R~ca~-tga~LhlI~PlGF~l~d----k~lkRAGlDY~ 53 (155)
T COG0219 14 PNTGNIIRTCAA-TGAELHLIEPLGFDLDD----KRLKRAGLDYH 53 (155)
T ss_pred CchhHHHHHHHh-cCCeEEEEccCCCccch----hhhhhcccchH
Confidence 457899999998 99999999999954332 34555677754
No 121
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=47.54 E-value=1.6e+02 Score=27.51 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=26.6
Q ss_pred CCcEEEEe-e--cccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-F--GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~--~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|++. . ......-+.++.+.++++|+.+++|-.
T Consensus 136 ~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 136 NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 45677775 1 223457788889999999999999975
No 122
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=46.95 E-value=1.8e+02 Score=26.82 Aligned_cols=89 Identities=8% Similarity=0.100 Sum_probs=56.1
Q ss_pred ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC---CCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCc
Q 018120 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG---PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSK 172 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~---~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (360)
++.+ |.-|. -|+.+++.|++.+.....+..-.. ..+..+.+ .| ..+.-+.+.+..+++.|
T Consensus 5 ~iAi-GATg~--VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f---~g-----------~~~~V~~l~~~~f~~vD 67 (322)
T PRK06901 5 NIAI-AAEFE--LSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF---NN-----------KAVEQIAPEEVEWADFN 67 (322)
T ss_pred eEEE-ecCcH--HHHHHHHHHHhcCCchhheeecccccccCCCEEEE---CC-----------EEEEEEECCccCcccCC
Confidence 4444 55554 899999999999987774443222 12222222 11 23333455555667889
Q ss_pred EEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCC
Q 018120 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (360)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 206 (360)
++++. ..+...++...+.+.|+ +++|.++
T Consensus 68 ia~fa----g~~~s~~~ap~a~~aG~-~VIDnSs 96 (322)
T PRK06901 68 YVFFA----GKMAQAEHLAQAAEAGC-IVIDLYG 96 (322)
T ss_pred EEEEc----CHHHHHHHHHHHHHCCC-EEEECCh
Confidence 98883 35688888888888886 5568875
No 123
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.88 E-value=1.1e+02 Score=29.68 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=25.1
Q ss_pred CCcEEEEe-ecc--cCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~~--~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|++. ... ....-+.++.+.|+++|+++++|-.
T Consensus 149 ~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 149 NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECC
Confidence 45677776 221 0113467888999999999999986
No 124
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=46.28 E-value=63 Score=28.57 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=52.2
Q ss_pred ccccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHh
Q 018120 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (360)
Q Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l 239 (360)
+...-.+|.+++-...++++.+.++++.|+..|..+.+...+ .+.+...+.. .++++-.|-..+..+
T Consensus 119 ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~-------~~El~~a~~~-ga~iiGINnRdL~t~ 185 (247)
T PRK13957 119 EARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHT-------EDEAKLALDC-GAEIIGINTRDLDTF 185 (247)
T ss_pred HHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECC-------HHHHHHHHhC-CCCEEEEeCCCCccc
Confidence 344578899988867778889999999999999999999964 3555555554 789998887766544
No 125
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=46.27 E-value=47 Score=23.18 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhcCCceEEEEeec------CChhHHHHHHHHHhCCCeece
Q 018120 81 SVTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVSR 125 (360)
Q Consensus 81 ~a~N~a~~la~~lG~~v~~ig~vG------~D~~g~~i~~~l~~~gv~~~~ 125 (360)
.+.=.|..|+. +|.+++++..-. +....+.+++.|++.||+..+
T Consensus 10 ig~E~A~~l~~-~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 10 IGIELAEALAE-LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHHHH-TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHH-hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 35556777887 999999986433 223678888999999998764
No 126
>PRK07582 cystathionine gamma-lyase; Validated
Probab=44.00 E-value=1.7e+02 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCCeEEEeCC
Q 018120 185 VIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 185 ~~~~~~~~a~~~~~~v~~d~~ 205 (360)
-+.++.+.++++|+.+++|-.
T Consensus 150 di~~I~~~a~~~g~~lvVD~t 170 (366)
T PRK07582 150 DLAALAAAAHAAGALLVVDNT 170 (366)
T ss_pred CHHHHHHHHHHcCCEEEEECC
Confidence 356777788888888888885
No 127
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=43.19 E-value=54 Score=28.71 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=33.3
Q ss_pred cCCCcEEEEeecc-cCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 168 VKGSKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 168 ~~~~~~v~~~~~~-~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
....|.+.++++. +..+.+.++++..|+..+++++.|++.
T Consensus 30 ~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~ 70 (232)
T PRK04169 30 ESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNI 70 (232)
T ss_pred hcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCc
Confidence 4678999999554 678889999999998889999999864
No 128
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=42.62 E-value=3.1e+02 Score=26.21 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=37.4
Q ss_pred cCCCcccCCccccCCCcEEEEe-e-----cccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 156 VKIQADELIAEDVKGSKWLVLR-F-----GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~-~-----~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
-.++.++++...-++.++++++ . -..+.+.+.++.+.|++++..++.|-.
T Consensus 158 ~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDev 213 (420)
T KOG0257|consen 158 WTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEV 213 (420)
T ss_pred ccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhH
Confidence 3445555555556788999998 2 224689999999999999999988873
No 129
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=42.33 E-value=1.6e+02 Score=24.21 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhcCCCCCcHHHHHHHHH-cCCCE
Q 018120 183 FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLA-KRCQW 261 (360)
Q Consensus 183 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l~-~~~~~ 261 (360)
.+.+..+++.+.+.+.+++|=-+.+.........|.+..+ ...++-...-.+ +.++.++..+.++ .++..
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP--~l~ivg~~~g~f-------~~~~~~~i~~~I~~~~pdi 104 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYP--GLRIVGYHHGYF-------DEEEEEAIINRINASGPDI 104 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCC--CeEEEEecCCCC-------ChhhHHHHHHHHHHcCCCE
Confidence 5777888888888888888777766655555566666555 455553221100 0112233333333 46777
Q ss_pred EEEEeCCC
Q 018120 262 AVVTLGPN 269 (360)
Q Consensus 262 vivt~G~~ 269 (360)
|+|-+|.-
T Consensus 105 v~vglG~P 112 (172)
T PF03808_consen 105 VFVGLGAP 112 (172)
T ss_pred EEEECCCC
Confidence 77777754
No 130
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=41.74 E-value=2.9e+02 Score=25.63 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=31.9
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcC
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n 232 (360)
-+|..+.... ...+-+..+++.|+++++.+++=-........+++.|... .+.++.+.
T Consensus 40 ~aD~~~~eP~-~~~~yv~~~l~~C~~~~Idv~~P~~~~~~l~~~r~~F~a~----Gv~l~~~~ 97 (329)
T PF15632_consen 40 AADEAYLEPA-DGEEYVDWCLDFCKEHGIDVFVPGRNRELLAAHRDEFEAL----GVKLLTAS 97 (329)
T ss_pred cCceeeecCC-CHHHHHHHHHHHHHHhCCeEEEcCccHHHHHHHHHHHHHh----CCEEEecC
Confidence 3444444433 2345566677777777777776655444344445554432 56666633
No 131
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=41.10 E-value=22 Score=24.84 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=15.7
Q ss_pred cCCCCccHHhHHHHHHHHH
Q 018120 291 IDATGAGDLFASGFLYGLV 309 (360)
Q Consensus 291 vdttGAGD~f~ag~~~~l~ 309 (360)
....|..|+|++||+.|+.
T Consensus 44 lr~~G~SE~~I~Gfl~Gl~ 62 (77)
T PF10911_consen 44 LRKQGWSESYILGFLAGLQ 62 (77)
T ss_pred HHHccccHHHHHHHHHHHH
Confidence 3456999999999999874
No 132
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=40.68 E-value=43 Score=29.77 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=49.2
Q ss_pred CCccccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHH
Q 018120 163 LIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (360)
Q Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~ 237 (360)
+.+....++|.|++-...++++.+.++++.|+..|.-+.+...+ .+.+...+.. .++++-.|...+.
T Consensus 124 I~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~-------~~El~~al~~-~a~iiGINnRdL~ 190 (254)
T PF00218_consen 124 IYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHN-------EEELERALEA-GADIIGINNRDLK 190 (254)
T ss_dssp HHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESS-------HHHHHHHHHT-T-SEEEEESBCTT
T ss_pred HHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECC-------HHHHHHHHHc-CCCEEEEeCcccc
Confidence 33445678999888867778999999999999999999999965 3556555543 6899988865443
No 133
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=40.62 E-value=2e+02 Score=26.46 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=47.9
Q ss_pred ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEE
Q 018120 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 175 (360)
++.++|.-|- .|..+.+.|.++. +.+....... .+. . + ...+..+.++|+++
T Consensus 4 ~VaIvGAtGy--~G~eLlrlL~~hp-~~~l~~~~s~-----------~~~-~----------~---~~~~~~~~~~DvvF 55 (313)
T PRK11863 4 KVFIDGEAGT--TGLQIRERLAGRS-DIELLSIPEA-----------KRK-D----------A---AARRELLNAADVAI 55 (313)
T ss_pred EEEEECCCCH--HHHHHHHHHhcCC-CeEEEEEecC-----------CCC-c----------c---cCchhhhcCCCEEE
Confidence 5666666665 7999999999886 2222211111 111 0 0 01123345678888
Q ss_pred EeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
+. ++.....++...+.+.|+ .++|+++.
T Consensus 56 la---lp~~~s~~~~~~~~~~g~-~VIDlSad 83 (313)
T PRK11863 56 LC---LPDDAAREAVALIDNPAT-RVIDASTA 83 (313)
T ss_pred EC---CCHHHHHHHHHHHHhCCC-EEEECChh
Confidence 76 366777888888777776 57899864
No 134
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=40.19 E-value=2.4e+02 Score=26.66 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=54.4
Q ss_pred ceEEEEeecCChhHHHHHHHHH-hCCCeeceeeec-CCCCeeEEEEEcCCCceeeecccccccCCCcccCCc-cccCCCc
Q 018120 96 PCGLIGAYGDDQQGQLFVSNMQ-FSGVDVSRLRMK-RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-EDVKGSK 172 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~~l~-~~gv~~~~i~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~ 172 (360)
++.++|.-|- .|+.+.+.|. +.++....+..- .... .|+ ... ..+. ....+++.. +.+++.|
T Consensus 2 ~VavvGATG~--VG~~ll~~L~~e~~fp~~~~~~~ss~~s---------~g~-~~~-f~~~--~~~v~~~~~~~~~~~vD 66 (366)
T TIGR01745 2 NVGLVGWRGM--VGSVLMQRMQEERDFDAIRPVFFSTSQL---------GQA-APS-FGGT--TGTLQDAFDIDALKALD 66 (366)
T ss_pred eEEEEcCcCH--HHHHHHHHHHhCCCCccccEEEEEchhh---------CCC-cCC-CCCC--cceEEcCcccccccCCC
Confidence 3555665554 8999999888 666653322211 1111 111 111 1011 112233333 3567889
Q ss_pred EEEEeecccCHHHHHHHHHHHHHCCCe-EEEeCCCh
Q 018120 173 WLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASF 207 (360)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~ 207 (360)
+++++. ..+...++...+.+.|.+ +++|.++.
T Consensus 67 ivffa~---g~~~s~~~~p~~~~aG~~~~VIDnSSa 99 (366)
T TIGR01745 67 IIITCQ---GGDYTNEIYPKLRESGWQGYWIDAASS 99 (366)
T ss_pred EEEEcC---CHHHHHHHHHHHHhCCCCeEEEECChh
Confidence 999872 467888888899999974 88899864
No 135
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=39.85 E-value=2.3e+02 Score=23.94 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=28.6
Q ss_pred cCCCcEEEEe--ecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 168 VKGSKWLVLR--FGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 168 ~~~~~~v~~~--~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
-..+|++.++ ....| ..+.++++..|+.+..+.-|.+..
T Consensus 62 ~aGadIIAlDaT~R~Rp-~~l~~li~~i~~~~~l~MADist~ 102 (192)
T PF04131_consen 62 EAGADIIALDATDRPRP-ETLEELIREIKEKYQLVMADISTL 102 (192)
T ss_dssp HCT-SEEEEE-SSSS-S-S-HHHHHHHHHHCTSEEEEE-SSH
T ss_pred HcCCCEEEEecCCCCCC-cCHHHHHHHHHHhCcEEeeecCCH
Confidence 4689999999 22334 889999999999999999999864
No 136
>PRK15447 putative protease; Provisional
Probab=39.72 E-value=3e+02 Score=25.11 Aligned_cols=71 Identities=10% Similarity=-0.035 Sum_probs=45.5
Q ss_pred CCCcEEEEe---ec---ccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCcc-EEEcCHHHHHHhh
Q 018120 169 KGSKWLVLR---FG---MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVD-LCFANEDEAAELV 240 (360)
Q Consensus 169 ~~~~~v~~~---~~---~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~d-il~~n~~E~~~l~ 240 (360)
..+|.||++ ++ ....+.+.++++.++++|+++++-+......+.-.+.+.+++.. ..| |+.-|..++..+-
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~-~~~~v~v~d~g~l~~~~ 104 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVEN-GEFLVEANDLGAVRLLA 104 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhc-CCCEEEEeCHHHHHHHH
Confidence 478999998 22 14679999999999999999998653321111222445555553 345 5555777766554
No 137
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=39.68 E-value=1.9e+02 Score=26.98 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=49.7
Q ss_pred eEEEEeecCChhHHHHHHHHHhCCCeeceeee--cCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEE
Q 018120 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (360)
Q Consensus 97 v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~--~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v 174 (360)
+.++|.-|. -|..+.+.|.+++.....+.. .....+..+.+ .+. .+...+++...+.+.|++
T Consensus 2 VaIvGAtG~--vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~---~~~-----------~~~~~~~~~~~~~~~D~v 65 (339)
T TIGR01296 2 VAIVGATGA--VGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF---KGK-----------ELEVNEAKIESFEGIDIA 65 (339)
T ss_pred EEEEcCCCH--HHHHHHHHHHhCCCChhhEEEEeccccCCCeeee---CCe-----------eEEEEeCChHHhcCCCEE
Confidence 445555544 799999999886544333221 11112222221 111 111122223345778998
Q ss_pred EEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
++.. +.....++...+.+.|+ +++|.++.
T Consensus 66 ~~a~---g~~~s~~~a~~~~~~G~-~VID~ss~ 94 (339)
T TIGR01296 66 LFSA---GGSVSKEFAPKAAKCGA-IVIDNTSA 94 (339)
T ss_pred EECC---CHHHHHHHHHHHHHCCC-EEEECCHH
Confidence 8872 34566667777777787 68999863
No 138
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=39.17 E-value=62 Score=19.31 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcchhcccCCccCcccHHHHHHHHHH
Q 018120 316 ECCKVGSCSGGSVIRSLGGEVTPENWQWMRKQMQI 350 (360)
Q Consensus 316 ~a~~~a~~aaa~~v~~~G~~~~~~~~~~~~~~~~~ 350 (360)
.+.+.|...++..=|..|+..++++.+.+++-++.
T Consensus 3 A~FEaGIklGaLyHQF~GtPvs~~~~~~le~aie~ 37 (38)
T PF04036_consen 3 AVFEAGIKLGALYHQFVGTPVSPETAESLEKAIEE 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHTT-EESTTTHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHhcCCcCCcchHHHHHHHHhc
Confidence 45677888888888999999999999999888764
No 139
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=38.65 E-value=23 Score=34.24 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=22.0
Q ss_pred EEEeCCcCCCcccCCCCccHHhHHHHHHHH
Q 018120 279 IVKVPAIGEAKAIDATGAGDLFASGFLYGL 308 (360)
Q Consensus 279 ~~~~~~~~~~~vvdttGAGD~f~ag~~~~l 308 (360)
...+|..-..+++.|+|-||++.||-..++
T Consensus 417 ~~~iPt~~v~~P~sTVGlGDtisa~af~~~ 446 (453)
T PRK14039 417 VCILPTLVSKSPVTTVGLGDTLTAGTFLRL 446 (453)
T ss_pred EEEechhhccCCccccccCccccHHHHHHH
Confidence 456676546789999999999977654443
No 140
>PRK07324 transaminase; Validated
Probab=38.08 E-value=2.9e+02 Score=25.87 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=27.1
Q ss_pred CCcEEEEe------ecccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR------FGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~------~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++++++ +...+.+.+.++++.|+++++.+++|-.
T Consensus 153 ~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~ 194 (373)
T PRK07324 153 NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEV 194 (373)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcc
Confidence 45677776 1234678889999999999999999964
No 141
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=37.55 E-value=72 Score=32.86 Aligned_cols=61 Identities=11% Similarity=0.243 Sum_probs=44.8
Q ss_pred ccccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCH
Q 018120 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANE 233 (360)
Q Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~ 233 (360)
+...-.+|.|++-...++.+.+.++++.+++.|.-+.+...+ .+.+...+.. .+++|-.|.
T Consensus 128 ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~-------~~el~~a~~~-ga~iiGINn 188 (695)
T PRK13802 128 EARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHT-------REEIERAIAA-GAKVIGINA 188 (695)
T ss_pred HHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCC-------HHHHHHHHhC-CCCEEEEeC
Confidence 445678899888766678889999999999999999999964 3445444443 566665543
No 142
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=36.29 E-value=1.6e+02 Score=27.97 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=54.6
Q ss_pred CCceEEEEeecCChhHHHHHHHHHhC-CCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCc
Q 018120 94 GVPCGLIGAYGDDQQGQLFVSNMQFS-GVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSK 172 (360)
Q Consensus 94 G~~v~~ig~vG~D~~g~~i~~~l~~~-gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (360)
..++.++|.-|. -|+.+.+.|.++ +++...+... ...+..+....+ .+. .......++++...+++.|
T Consensus 38 ~~kVaIvGATG~--vG~eLlrlL~~hP~~el~~l~s~-~saG~~i~~~~~----~l~----~~~~~~~~~~~~~~~~~~D 106 (381)
T PLN02968 38 KKRIFVLGASGY--TGAEVRRLLANHPDFEITVMTAD-RKAGQSFGSVFP----HLI----TQDLPNLVAVKDADFSDVD 106 (381)
T ss_pred ccEEEEECCCCh--HHHHHHHHHHhCCCCeEEEEECh-hhcCCCchhhCc----ccc----CccccceecCCHHHhcCCC
Confidence 347788887776 799999999988 4555444331 112211111110 000 0011112333334457889
Q ss_pred EEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChh
Q 018120 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (360)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~ 208 (360)
++++. ++.+...+++... +.| ..++|+++.+
T Consensus 107 vVf~A---lp~~~s~~i~~~~-~~g-~~VIDlSs~f 137 (381)
T PLN02968 107 AVFCC---LPHGTTQEIIKAL-PKD-LKIVDLSADF 137 (381)
T ss_pred EEEEc---CCHHHHHHHHHHH-hCC-CEEEEcCchh
Confidence 98886 3456777777765 355 5788998754
No 143
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.87 E-value=17 Score=30.48 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=35.4
Q ss_pred CCccHHhHHHHHH-HHHcCCCHHHHHHHHHHHhcchhcccCCc
Q 018120 294 TGAGDLFASGFLY-GLVKGLSLEECCKVGSCSGGSVIRSLGGE 335 (360)
Q Consensus 294 tGAGD~f~ag~~~-~l~~~~~l~~a~~~a~~aaa~~v~~~G~~ 335 (360)
-|.|-+|+=||+- .|-.++++|||.+|-..|-+.++.+-|..
T Consensus 147 gGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsS 189 (224)
T KOG0174|consen 147 GGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSS 189 (224)
T ss_pred ccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 4889999988885 46779999999999999999988887654
No 144
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=34.52 E-value=2.3e+02 Score=22.23 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=24.6
Q ss_pred cccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEE
Q 018120 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSM 202 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~ 202 (360)
+.++++|+++.... +......+.+.+++.+++++.
T Consensus 85 ~~~~~~diVi~~~d--~~~~~~~l~~~~~~~~i~~i~ 119 (143)
T cd01483 85 DFLDGVDLVIDAID--NIAVRRALNRACKELGIPVID 119 (143)
T ss_pred HHhcCCCEEEECCC--CHHHHHHHHHHHHHcCCCEEE
Confidence 45678888887632 356667777888888877654
No 145
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=34.26 E-value=4.2e+02 Score=25.25 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=23.9
Q ss_pred CCcEEEEe-ec--ccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~--~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|+++ .. .....-+.++.+.|+++|+.+++|-.
T Consensus 155 ~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 155 PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 45677765 11 11122467778888899999999986
No 146
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=34.14 E-value=2.2e+02 Score=27.03 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=24.0
Q ss_pred CCcEEEEe-ecc--cCHHHHHHHHHHHHHCCCeEEEeCCC
Q 018120 170 GSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (360)
Q Consensus 170 ~~~~v~~~-~~~--~~~~~~~~~~~~a~~~~~~v~~d~~~ 206 (360)
+.++|+++ ... ....-+.++.+.++++|+.+++|-..
T Consensus 144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~ 183 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTF 183 (391)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 45677766 111 11223567788888999999999863
No 147
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=34.01 E-value=3e+02 Score=23.45 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=41.3
Q ss_pred cCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcC
Q 018120 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (360)
Q Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n 232 (360)
-..+|.+++....++.+.+.++++.++..|..+.++..+. +.+.+.... .+|++..+
T Consensus 92 ~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~-------~e~~~~~~~-g~~~i~~t 148 (217)
T cd00331 92 AAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDE-------EELERALAL-GAKIIGIN 148 (217)
T ss_pred HcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCH-------HHHHHHHHc-CCCEEEEe
Confidence 3578899988445567888999999999999998888653 224444433 67888666
No 148
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=33.91 E-value=2.4e+02 Score=26.50 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=23.5
Q ss_pred CCcEEEEe-ec--ccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~--~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|+++ .. .....-+.++.+.++++|+.+++|-.
T Consensus 139 ~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 139 NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 34567765 11 11123457777888899999999986
No 149
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=33.32 E-value=55 Score=29.03 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=50.3
Q ss_pred cccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHh
Q 018120 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l 239 (360)
...-++|.+++=...++.+.+.++++.|++.|.-+.+...+ .+.+...+.. .++++-.|...+..+
T Consensus 125 Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~-------~eEl~rAl~~-ga~iIGINnRdL~tf 190 (254)
T COG0134 125 ARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHN-------EEELERALKL-GAKIIGINNRDLTTL 190 (254)
T ss_pred HHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECC-------HHHHHHHHhC-CCCEEEEeCCCcchh
Confidence 34457777766555667888999999999999999999965 4666666663 789998887776654
No 150
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=33.06 E-value=1.5e+02 Score=28.44 Aligned_cols=126 Identities=15% Similarity=0.166 Sum_probs=66.1
Q ss_pred cC-CceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceee--ecccccccCCCcccCCccccC
Q 018120 93 FG-VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM--RPCLSNAVKIQADELIAEDVK 169 (360)
Q Consensus 93 lG-~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~--~~~~~~~~~~~~~~~~~~~~~ 169 (360)
+| ..-.=+-.+|-.+.|..+.+.|.+.|+.--.+ .+.+-+|.. ....+ ......+++ .+.+.
T Consensus 173 ~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I-------------aNRT~erA~~La~~~~-~~~~~l~el-~~~l~ 237 (414)
T COG0373 173 FGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI-------------ANRTLERAEELAKKLG-AEAVALEEL-LEALA 237 (414)
T ss_pred hcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE-------------EcCCHHHHHHHHHHhC-CeeecHHHH-HHhhh
Confidence 45 34334456777789999999999999854322 221222221 11111 111111221 34678
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHC-CCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhhc
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~~ 241 (360)
.+|+|+.+.+...+-.-...++.+.+. ...+++|++-|. +..+...+ ..++...+.++++....
T Consensus 238 ~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPR---die~~v~~-----l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 238 EADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPR---DVEPEVGE-----LPNVFLYTIDDLEEIVE 302 (414)
T ss_pred hCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCC---CCCccccC-----cCCeEEEehhhHHHHHH
Confidence 999999983322233333344433221 117999998652 22222221 45677777777776653
No 151
>PLN00175 aminotransferase family protein; Provisional
Probab=32.55 E-value=4.4e+02 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=25.2
Q ss_pred CCcEEEEe------ecccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR------FGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~------~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.+++++. +..++.+.+.++++.|+++++.++.|-.
T Consensus 187 ~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~ 228 (413)
T PLN00175 187 KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEV 228 (413)
T ss_pred CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 34566664 2234567788888888888888888874
No 152
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=32.54 E-value=2.1e+02 Score=26.51 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=25.8
Q ss_pred ccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
.+.+.|++.+. ++.....++...+.+.|++ ++|.++.
T Consensus 70 ~~~~~DvVf~a---~p~~~s~~~~~~~~~~G~~-VIDlsg~ 106 (341)
T TIGR00978 70 ASKDVDIVFSA---LPSEVAEEVEPKLAEAGKP-VFSNASN 106 (341)
T ss_pred HhccCCEEEEe---CCHHHHHHHHHHHHHCCCE-EEECChh
Confidence 45678888876 3566667777777777876 5788763
No 153
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=32.53 E-value=1.6e+02 Score=24.39 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeeceeee
Q 018120 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128 (360)
Q Consensus 53 ~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~ 128 (360)
.++...++.+.+..++ ........+..-++..+.+ ||.+ |+...+. +++..+++.|++.+++...+..
T Consensus 48 tpe~~~W~~e~k~~gi----~v~vvSNn~e~RV~~~~~~-l~v~--fi~~A~K-P~~~~fr~Al~~m~l~~~~vvm 115 (175)
T COG2179 48 TPELRAWLAELKEAGI----KVVVVSNNKESRVARAAEK-LGVP--FIYRAKK-PFGRAFRRALKEMNLPPEEVVM 115 (175)
T ss_pred CHHHHHHHHHHHhcCC----EEEEEeCCCHHHHHhhhhh-cCCc--eeecccC-ccHHHHHHHHHHcCCChhHEEE
Confidence 5777888888887654 5666777888889988888 7654 6777788 7999999999999998876544
No 154
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=32.43 E-value=2.8e+02 Score=25.48 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=26.8
Q ss_pred ccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
.+++.|++++. ++.+...+++..+.+.|+ .++|+++.
T Consensus 46 ~~~~~D~vFla---lp~~~s~~~~~~~~~~g~-~VIDlSad 82 (310)
T TIGR01851 46 LLNAADVAILC---LPDDAAREAVSLVDNPNT-CIIDASTA 82 (310)
T ss_pred hhcCCCEEEEC---CCHHHHHHHHHHHHhCCC-EEEECChH
Confidence 34678988886 356777788887777776 57899864
No 155
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=32.35 E-value=1.2e+02 Score=20.42 Aligned_cols=45 Identities=7% Similarity=0.021 Sum_probs=29.4
Q ss_pred eEEEEeecCCh----hHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEc
Q 018120 97 CGLIGAYGDDQ----QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141 (360)
Q Consensus 97 v~~ig~vG~D~----~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~ 141 (360)
+..++.||++- ....+.+.|.+.||+...+.........++.+-+
T Consensus 2 ~a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~ 50 (66)
T cd04915 2 VAIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDR 50 (66)
T ss_pred EEEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEH
Confidence 46677888632 3456667789999998777665545555555443
No 156
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=32.27 E-value=2.4e+02 Score=26.42 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=23.5
Q ss_pred CCcEEEEe-ecc--cCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~~--~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|++. ... ....-+.++.+.++++|+.+++|-.
T Consensus 125 ~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t 163 (369)
T cd00614 125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNT 163 (369)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 34566765 111 1112366788888999999999986
No 157
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=31.16 E-value=2e+02 Score=23.12 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=8.9
Q ss_pred EEEEeecCChhHHHHHHHHH
Q 018120 98 GLIGAYGDDQQGQLFVSNMQ 117 (360)
Q Consensus 98 ~~ig~vG~D~~g~~i~~~l~ 117 (360)
.+.|..|.. -...++..++
T Consensus 4 ~l~G~~GsG-KTtl~~~l~~ 22 (158)
T cd03112 4 VLTGFLGAG-KTTLLNHILT 22 (158)
T ss_pred EEEECCCCC-HHHHHHHHHh
Confidence 355666664 3334444443
No 158
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.05 E-value=2.6e+02 Score=26.93 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=23.8
Q ss_pred CCcEEEEe-ecc--cCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~~--~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|++. ... ....-+.++.+.|+++|+.+++|-.
T Consensus 149 ~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t 187 (431)
T PRK08248 149 KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT 187 (431)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCC
Confidence 45677776 211 1112246788889999999999986
No 159
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=30.87 E-value=2.3e+02 Score=25.25 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=56.3
Q ss_pred EEEeecCChhHHHHHHHHHhCCCeeceeeec---CCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEE
Q 018120 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK---RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (360)
Q Consensus 99 ~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~---~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 175 (360)
.+|..|. .|+.+...|..+. ...+..- .+..+.-+.+-. +=+++.. .+...+.++.++...+.++.+|+++
T Consensus 9 vlGaTGa--VGQrFi~lLsdhP--~f~ikvLgAS~RSAGK~ya~a~-~wkqt~~-lp~~~~e~~V~ec~~~~F~ecDIvf 82 (361)
T KOG4777|consen 9 VLGATGA--VGQRFISLLSDHP--YFSIKVLGASKRSAGKRYAFAG-NWKQTDL-LPESAHEYTVEECTADSFNECDIVF 82 (361)
T ss_pred eeeccch--hHHHHHHHhccCC--cceeeeecccccccCCceEecc-cchhccc-ccchhhhhhHhhcChhhcccccEEE
Confidence 5666665 7888988888762 1122221 123444444321 2223322 2334456677777778899999999
Q ss_pred EeecccCHHHHHHHHHHHHHCCCeEEEeC
Q 018120 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (360)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~ 204 (360)
.+ +..+...++-+.+.+.|..++=+.
T Consensus 83 sg---ldad~ageiek~f~eag~iiVsNa 108 (361)
T KOG4777|consen 83 SG---LDADIAGEIEKLFAEAGTIIVSNA 108 (361)
T ss_pred ec---CCchhhhhhhHHHHhcCeEEEeCc
Confidence 87 234566667777778775544333
No 160
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=30.74 E-value=60 Score=30.74 Aligned_cols=49 Identities=31% Similarity=0.334 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHH
Q 018120 185 VIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (360)
Q Consensus 185 ~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E 235 (360)
...++++.|+++++++++|.++-.... -.+.+.+.+.. .+|++..+-+-
T Consensus 175 ~~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~-GaDLV~~SgdK 223 (395)
T COG1921 175 SEEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALAL-GADLVSFSGDK 223 (395)
T ss_pred cHHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhc-CCCEEEEecch
Confidence 345688999999999999998743221 23455555554 68888887553
No 161
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=30.56 E-value=3.3e+02 Score=24.09 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=46.7
Q ss_pred CCCcEEEEe--ecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEc---CHHHHHHhh
Q 018120 169 KGSKWLVLR--FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA---NEDEAAELV 240 (360)
Q Consensus 169 ~~~~~v~~~--~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~---n~~E~~~l~ 240 (360)
...|+|+++ .+.+..+.+..+++.++..|...++=+... -...+.+.|..+-.-|++| |.+|++.+.
T Consensus 32 ~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~-----~~~~i~r~LD~Ga~gIivP~v~taeea~~~v 103 (249)
T TIGR03239 32 AGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN-----EPVIIKRLLDIGFYNFLIPFVESAEEAERAV 103 (249)
T ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC-----CHHHHHHHhcCCCCEEEecCcCCHHHHHHHH
Confidence 568999999 566688999999999999998877776442 2344556666433347777 456666553
No 162
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=30.44 E-value=56 Score=30.65 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCChhHH--Hhh----hHHHHHhhccCCccEEEcCHH
Q 018120 183 FEVIQAAIRIAKQEGLSVSMDLASFEMV--RNF----RTPLLQLLESGDVDLCFANED 234 (360)
Q Consensus 183 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~--~~~----~~~l~~~l~~~~~dil~~n~~ 234 (360)
.-.+.++.+.+++++++++.|.++-... ..| .+.+++.+.. .+|++..+-+
T Consensus 156 ~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~-GaDlV~fSGd 212 (367)
T PF03841_consen 156 EVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAA-GADLVTFSGD 212 (367)
T ss_dssp -----HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCC-T-SEEEEETT
T ss_pred cccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhc-CCCEEEEECC
Confidence 4567789999999999999999873221 112 4567777774 6888887644
No 163
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=30.40 E-value=3.5e+02 Score=23.46 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=37.3
Q ss_pred cEEEEee--cccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcC
Q 018120 172 KWLVLRF--GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (360)
Q Consensus 172 ~~v~~~~--~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n 232 (360)
+.|.+++ .++.++.+.++++.+++.|..+.++.++... .+.+.+.++++ .+|.+.++
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~--~~~~~~~~ll~--~~d~v~is 130 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR--RYDPVIDELLD--VTDLVMLD 130 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC--cchHHHHHHHH--hCCEEEEC
Confidence 3566773 2345677889999999999999999876421 12344555555 56765443
No 164
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=30.09 E-value=28 Score=28.00 Aligned_cols=43 Identities=7% Similarity=0.016 Sum_probs=34.6
Q ss_pred ccccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
++.++++|+++++++.+-..++..+++.++.....+++-|+.+
T Consensus 57 ~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~ 99 (147)
T PF04016_consen 57 EEILPWADVVIITGSTLVNGTIDDILELARNAREVILYGPSAP 99 (147)
T ss_dssp HHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCGG
T ss_pred HHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCch
Confidence 4678999999999766667899999999997677788888864
No 165
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=30.08 E-value=1.2e+02 Score=26.76 Aligned_cols=85 Identities=9% Similarity=-0.034 Sum_probs=42.6
Q ss_pred HHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhh--cCCCCCcHHHHHHHHHcC-CCEEEEE
Q 018120 189 AIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV--RGEENADSEAALEFLAKR-CQWAVVT 265 (360)
Q Consensus 189 ~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~--~~~~~~~~~~~~~~l~~~-~~~vivt 265 (360)
+.+.++++++..++|.+-|+...-. ....+......+.++..-..+...-. +...-++.+++.+.+.+. .+.|++|
T Consensus 58 l~~~l~~~~i~~vIDATHPfA~~is-~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~iflt 136 (249)
T PF02571_consen 58 LAEFLRENGIDAVIDATHPFAAEIS-QNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFLT 136 (249)
T ss_pred HHHHHHhCCCcEEEECCCchHHHHH-HHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEEe
Confidence 3444567788888888776542211 11111111112333333222211000 000134677777777654 4899999
Q ss_pred eCCCceEEE
Q 018120 266 LGPNGCIAK 274 (360)
Q Consensus 266 ~G~~G~~~~ 274 (360)
.|.+..-.|
T Consensus 137 tGsk~L~~f 145 (249)
T PF02571_consen 137 TGSKNLPPF 145 (249)
T ss_pred CchhhHHHH
Confidence 999875443
No 166
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.79 E-value=3.3e+02 Score=22.63 Aligned_cols=107 Identities=11% Similarity=0.177 Sum_probs=56.8
Q ss_pred eEEEEeec--CChhHHHHHHHHHhCCCeeceeeecC---C--CCeeEEEEEcCCCceeeecccccc-cCC-----CcccC
Q 018120 97 CGLIGAYG--DDQQGQLFVSNMQFSGVDVSRLRMKR---G--PTGQCVCLVDASGNRTMRPCLSNA-VKI-----QADEL 163 (360)
Q Consensus 97 v~~ig~vG--~D~~g~~i~~~l~~~gv~~~~i~~~~---~--~t~~~~~~~~~~g~r~~~~~~~~~-~~~-----~~~~~ 163 (360)
+.+-|..| .-..-..+.+.|++.|...-.+...+ + .+|..++-++ +|++..+.+.+.. ..+ ..+.+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHHH
Confidence 33444443 34567778889999988777665442 2 3444444333 5777665443321 001 11111
Q ss_pred C-------ccccCCCcEEEEe-eccc--CHHHHHHHHHHHHHCCCeEEEeC
Q 018120 164 I-------AEDVKGSKWLVLR-FGMF--NFEVIQAAIRIAKQEGLSVSMDL 204 (360)
Q Consensus 164 ~-------~~~~~~~~~v~~~-~~~~--~~~~~~~~~~~a~~~~~~v~~d~ 204 (360)
. ...++.+|+++++ .+.+ ....+.++++..-+.+.++++-+
T Consensus 87 e~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 87 EEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred HHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 1 1234567888888 2222 23455566666666666666655
No 167
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=29.40 E-value=3.9e+02 Score=23.45 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=18.3
Q ss_pred EEeecCChhHHHHHHHHHhCCCeec
Q 018120 100 IGAYGDDQQGQLFVSNMQFSGVDVS 124 (360)
Q Consensus 100 ig~vG~D~~g~~i~~~l~~~gv~~~ 124 (360)
+|.||-..-|+.+.+.+++.-++..
T Consensus 3 vgiVGcGaIG~~l~e~v~~~~~~~e 27 (255)
T COG1712 3 VGIVGCGAIGKFLLELVRDGRVDFE 27 (255)
T ss_pred EEEEeccHHHHHHHHHHhcCCccee
Confidence 6777877889999988886534444
No 168
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.34 E-value=1.1e+02 Score=19.97 Aligned_cols=43 Identities=2% Similarity=0.090 Sum_probs=27.1
Q ss_pred EEEEeecCC-----hhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEE
Q 018120 98 GLIGAYGDD-----QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (360)
Q Consensus 98 ~~ig~vG~D-----~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~ 140 (360)
.+++.+|.+ .....+.+.|.+.||+...+.........++.+-
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~ 49 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVID 49 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 456677742 2455677889999999987765333344444443
No 169
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=28.43 E-value=92 Score=23.30 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=27.2
Q ss_pred cCCCCccHHhHHHHHHHHHcC-CCHHHHHHHHHH
Q 018120 291 IDATGAGDLFASGFLYGLVKG-LSLEECCKVGSC 323 (360)
Q Consensus 291 vdttGAGD~f~ag~~~~l~~~-~~l~~a~~~a~~ 323 (360)
.|-.|-||..-|-+.|+|++| .+.+||++.=..
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~~ 86 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKITIEEAVEILKA 86 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHHC
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 588899999999999999998 589998886443
No 170
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=28.23 E-value=4.3e+02 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=21.9
Q ss_pred ccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 180 MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 180 ~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
..+.+.+.++++.|+++++.+++|-.
T Consensus 141 ~~~~~~~~~l~~~a~~~~~~ii~De~ 166 (330)
T TIGR01140 141 LIPPETLLALAARLRARGGWLVVDEA 166 (330)
T ss_pred CCCHHHHHHHHHHhHhcCCEEEEECc
Confidence 34678888999999999999999985
No 171
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=28.16 E-value=5.1e+02 Score=24.39 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=27.2
Q ss_pred CCcEEEEe---ecccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR---FGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~---~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|+++ .......-+.++.+.|+++|+.+++|-.
T Consensus 135 ~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t 173 (377)
T TIGR01324 135 NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNT 173 (377)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 45677776 1223456778899999999999999986
No 172
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=28.02 E-value=2.7e+02 Score=26.44 Aligned_cols=37 Identities=24% Similarity=0.177 Sum_probs=23.7
Q ss_pred CCcEEEEe-ecc--cCHHHHHHHHHHHHHCCCeEEEeCCC
Q 018120 170 GSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (360)
Q Consensus 170 ~~~~v~~~-~~~--~~~~~~~~~~~~a~~~~~~v~~d~~~ 206 (360)
+.++|+++ ... ....-+.++.+.|+++|+.+++|-..
T Consensus 149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~ 188 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTF 188 (398)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCc
Confidence 45677775 111 11122566788889999999999863
No 173
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=27.91 E-value=3.3e+02 Score=25.66 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=24.7
Q ss_pred CCcEEEEe-ecc--cCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~~--~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++++++ ... ....-+.++.+.|+++|+.+++|-.
T Consensus 131 ~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 131 KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence 45677766 111 1122477888899999999999986
No 174
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=27.80 E-value=3.8e+02 Score=23.80 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=45.6
Q ss_pred CCCcEEEEe--ecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEc---CHHHHHHh
Q 018120 169 KGSKWLVLR--FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA---NEDEAAEL 239 (360)
Q Consensus 169 ~~~~~v~~~--~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~---n~~E~~~l 239 (360)
..+|+|+++ .+....+.+..+++.++..|...++=+.... ...+.+.|..+-.-|++| |.+|++.+
T Consensus 39 ~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-----~~~i~r~LD~Ga~giivP~v~tae~a~~~ 109 (256)
T PRK10558 39 AGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-----PVIIKRLLDIGFYNFLIPFVETAEEARRA 109 (256)
T ss_pred cCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-----HHHHHHHhCCCCCeeeecCcCCHHHHHHH
Confidence 568999999 5666788999999999999988887775431 244555565434456666 45555554
No 175
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=27.79 E-value=3.6e+02 Score=22.43 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEE
Q 018120 183 FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (360)
Q Consensus 183 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~ 230 (360)
.+.+..+++.+.+++.+++|=-+.+...+...+.+.+-.+ ...++-
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP--~l~i~g 79 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYP--KLKIVG 79 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCC--CCEEEE
Confidence 5777888888888887887777776666666666666555 555554
No 176
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=27.18 E-value=1.2e+02 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=32.5
Q ss_pred cCCCcEEEEeecc-cCHHHHHHHHHHHH-HCCCeEEEeCCCh
Q 018120 168 VKGSKWLVLRFGM-FNFEVIQAAIRIAK-QEGLSVSMDLASF 207 (360)
Q Consensus 168 ~~~~~~v~~~~~~-~~~~~~~~~~~~a~-~~~~~v~~d~~~~ 207 (360)
....|.+.++++. +..+.+.++++..+ +.+.++++.|++.
T Consensus 39 ~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 39 EAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred HcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCCh
Confidence 4678999999433 56688888998888 7899999999875
No 177
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=26.95 E-value=3.8e+02 Score=25.60 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=23.6
Q ss_pred CCcEEEEe-ecc--cCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~~--~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|+++ ... ....-+.++.+.++++++.+++|-.
T Consensus 142 ~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t 180 (418)
T TIGR01326 142 NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNT 180 (418)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 34667766 111 0112356788889999999999985
No 178
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=26.89 E-value=1.4e+02 Score=23.50 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=25.6
Q ss_pred EEEEeecccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
++.+|+ .+|.+.+..+++.+.+.|.++++---
T Consensus 2 ~vFvS~-SMP~~~Lk~l~~~a~~~g~~~VlRG~ 33 (130)
T TIGR02742 2 MVFVSF-SMPEPLLKQLLDQAEALGAPLVIRGL 33 (130)
T ss_pred EEEEEc-CCCHHHHHHHHHHHHHhCCeEEEeCC
Confidence 345564 45899999999999999999888763
No 179
>PRK09330 cell division protein FtsZ; Validated
Probab=26.58 E-value=2.3e+02 Score=26.98 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=68.6
Q ss_pred ceEecCchHHHHHHHHHhhcCCc-eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeeccc
Q 018120 74 IKTIAGGSVTNTIRGLSVGFGVP-CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL 152 (360)
Q Consensus 74 ~~~~~GG~a~N~a~~la~~lG~~-v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~ 152 (360)
...-.||.+.|+.-.+.+ .|.+ +.|+ .+-.|. +.|.....+.. +.....-|.- ....++... -
T Consensus 17 kViGvGG~G~Nav~~m~~-~~~~~v~fi-a~NTD~------q~L~~~~a~~k-i~lG~~~t~G----lGaG~~pe~--G- 80 (384)
T PRK09330 17 KVIGVGGGGGNAVNRMIE-EGIQGVEFI-AANTDA------QALLKSKAPVK-IQLGEKLTRG----LGAGANPEV--G- 80 (384)
T ss_pred EEEEECCcHHHHHHHHHH-cCCCCceEE-EEeCcH------HHHhcCCCCeE-EEcCCccccc----CCCCCCHHH--H-
Confidence 345689999999999987 7743 5554 445562 45665555433 2221111100 001111110 0
Q ss_pred ccccCCCcccCCccccCCCcEEEEee---cccCHHHHHHHHHHHHHCCCeEEEeCCChhH------HHhhhHHHHHhhcc
Q 018120 153 SNAVKIQADELIAEDVKGSKWLVLRF---GMFNFEVIQAAIRIAKQEGLSVSMDLASFEM------VRNFRTPLLQLLES 223 (360)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~------~~~~~~~l~~~l~~ 223 (360)
..+..-..+.+ .+.++.+|.+++.. +..-.....-+.+.+++.++.++-=...|+. ..+-...+.++.+
T Consensus 81 ~~aaee~~e~I-~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~- 158 (384)
T PRK09330 81 RKAAEESREEI-REALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRK- 158 (384)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHH-
Confidence 00011111111 34578999998872 1111223334557788888764433332322 1223345556666
Q ss_pred CCccEEEc--CHHH
Q 018120 224 GDVDLCFA--NEDE 235 (360)
Q Consensus 224 ~~~dil~~--n~~E 235 (360)
++|.+++ |+.=
T Consensus 159 -~~D~vIvi~Nd~L 171 (384)
T PRK09330 159 -HVDTLIVIPNDKL 171 (384)
T ss_pred -HCCEEEEEecHHH
Confidence 5665554 5443
No 180
>PRK07121 hypothetical protein; Validated
Probab=26.55 E-value=99 Score=30.32 Aligned_cols=23 Identities=9% Similarity=0.016 Sum_probs=16.2
Q ss_pred cCchHHHHHHHHHhhcCCceEEEE
Q 018120 78 AGGSVTNTIRGLSVGFGVPCGLIG 101 (360)
Q Consensus 78 ~GG~a~N~a~~la~~lG~~v~~ig 101 (360)
.|++++-+|..++. .|.+|.++-
T Consensus 28 aG~AGl~AA~~aae-~G~~VillE 50 (492)
T PRK07121 28 FGAAGACAAIEAAA-AGARVLVLE 50 (492)
T ss_pred cCHHHHHHHHHHHH-CCCeEEEEe
Confidence 45566677777776 787777764
No 181
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=26.26 E-value=1.8e+02 Score=25.11 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=53.8
Q ss_pred HHHHHhh--cCCceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceee-ecccccccCCCccc
Q 018120 86 IRGLSVG--FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM-RPCLSNAVKIQADE 162 (360)
Q Consensus 86 a~~la~~--lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~-~~~~~~~~~~~~~~ 162 (360)
..+++++ -+..|.|++.--.+ .-+.+.+.|++.|++++.-.+...-|..+-+ +..++-|-+ +....+...+...
T Consensus 29 ~eAl~rLr~~~~kVkFvTNttk~-Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~-~~~~~lrP~l~v~d~a~~dF~gi- 105 (262)
T KOG3040|consen 29 VEALKRLRDQHVKVKFVTNTTKE-SKRNLHERLQRLGFDVSEEEIFTSLPAARQY-LEENQLRPYLIVDDDALEDFDGI- 105 (262)
T ss_pred HHHHHHHHhcCceEEEEecCcch-hHHHHHHHHHHhCCCccHHHhcCccHHHHHH-HHhcCCCceEEEcccchhhCCCc-
Confidence 3444441 36789999887775 4566677889999888754332221111111 112333322 2222222222221
Q ss_pred CCccccCCCcEEEEe--ecccCHHHHHHHHHHHHHCC
Q 018120 163 LIAEDVKGSKWLVLR--FGMFNFEVIQAAIRIAKQEG 197 (360)
Q Consensus 163 ~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~a~~~~ 197 (360)
.-++.++|++. ....+.+.+.++.+...+..
T Consensus 106 ----dTs~pn~VViglape~F~y~~ln~AFrvL~e~~ 138 (262)
T KOG3040|consen 106 ----DTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMK 138 (262)
T ss_pred ----cCCCCCeEEEecCcccccHHHHHHHHHHHHcCC
Confidence 12355677777 33335667777777666653
No 182
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.21 E-value=1.8e+02 Score=25.94 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.7
Q ss_pred CchHHHHHHHHHhhcCCceEEEEeecCCh
Q 018120 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQ 107 (360)
Q Consensus 79 GG~a~N~a~~la~~lG~~v~~ig~vG~D~ 107 (360)
--++...|..|.. +|.++..+..||||.
T Consensus 20 dtNa~~la~~L~~-~G~~v~~~~~VgD~~ 47 (255)
T COG1058 20 DTNAAFLADELTE-LGVDLARITTVGDNP 47 (255)
T ss_pred cchHHHHHHHHHh-cCceEEEEEecCCCH
Confidence 3457788888888 999999999999984
No 183
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=26.07 E-value=1.3e+02 Score=25.92 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=48.6
Q ss_pred CccccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHH
Q 018120 164 IAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (360)
Q Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~ 237 (360)
.+..++.+|.|++=-.+++...+..+++.++..|.--.++..+ .+.+.+.+.- .+.++-.|...+.
T Consensus 153 ~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~-------~eEm~ralei-GakvvGvNNRnL~ 218 (289)
T KOG4201|consen 153 YEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVND-------EEEMQRALEI-GAKVVGVNNRNLH 218 (289)
T ss_pred HHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeecc-------HHHHHHHHHh-CcEEEeecCCccc
Confidence 3456788998887656678889999999999999888888854 3555555553 6777777765544
No 184
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.03 E-value=3.8e+02 Score=25.91 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCC
Q 018120 184 EVIQAAIRIAKQEGLSVSMDLAS 206 (360)
Q Consensus 184 ~~~~~~~~~a~~~~~~v~~d~~~ 206 (360)
.-+.++.+.|+++|+.+++|-..
T Consensus 172 ~di~~I~~la~~~gi~livD~t~ 194 (437)
T PRK05613 172 LDIPAVAEVAHRNQVPLIVDNTI 194 (437)
T ss_pred cCHHHHHHHHHHcCCeEEEECCC
Confidence 34677888889999999999973
No 185
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.91 E-value=4e+02 Score=22.35 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=38.1
Q ss_pred CCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcC
Q 018120 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (360)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n 232 (360)
..+|++.+.+. .+.....++++.++++|.++.+++..+. ...+......+. .+|++..+
T Consensus 75 ~Gad~i~vh~~-~~~~~~~~~i~~~~~~g~~~~~~~~~~~---t~~~~~~~~~~~-g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGV-ADDATIKGAVKAAKKHGKEVQVDLINVK---DKVKRAKELKEL-GADYIGVH 133 (206)
T ss_pred cCCCEEEEecc-CCHHHHHHHHHHHHHcCCEEEEEecCCC---ChHHHHHHHHHc-CCCEEEEc
Confidence 46788887732 2455678899999999999998853321 112333333332 68999874
No 186
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=25.78 E-value=85 Score=30.57 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=50.6
Q ss_pred ccccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHH
Q 018120 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (360)
Q Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~ 238 (360)
+...-.+|.+++-...++++.+.++++.|++.|....++..+ .+.+...+.. .++++-.|-..+..
T Consensus 127 ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~-------~~El~~al~~-~a~iiGiNnRdL~t 192 (454)
T PRK09427 127 LARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSN-------EEELERAIAL-GAKVIGINNRNLRD 192 (454)
T ss_pred HHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECC-------HHHHHHHHhC-CCCEEEEeCCCCcc
Confidence 345578888887756678889999999999999999999964 4566666654 78888887665543
No 187
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=25.75 E-value=1.7e+02 Score=25.33 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=35.4
Q ss_pred CCCcEEEEeecccCHHHHHHHHHHHHHCCCe--EEEeCCChhHHHhhhHHHHHhhccCCccEEEc
Q 018120 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLS--VSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (360)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~ 231 (360)
.++|++.+... ......++++..|+.|++ ++++|..+- +.+..+++ .+|++..
T Consensus 83 agad~It~H~E--~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~------~~i~~~l~--~vD~Vll 137 (220)
T COG0036 83 AGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPATPL------EALEPVLD--DVDLVLL 137 (220)
T ss_pred hCCCEEEEEec--cCcCHHHHHHHHHHcCCeEEEEECCCCCH------HHHHHHHh--hCCEEEE
Confidence 45788888844 345677888899998887 667776542 44444555 6666544
No 188
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=25.68 E-value=2.5e+02 Score=26.32 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=27.6
Q ss_pred ceEecCchHHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCe
Q 018120 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD 122 (360)
Q Consensus 74 ~~~~~GG~a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~ 122 (360)
.-.-.||++.|+.-.+.+ .+.+-.-+-.+-.|. +.|+....+
T Consensus 21 ~viGvGg~G~n~v~~l~~-~~~~~~~~iainTD~------~~L~~~~a~ 62 (349)
T TIGR00065 21 KVIGVGGGGNNTVNRMLE-EGVEGVEFIAINTDA------QHLKTTKAD 62 (349)
T ss_pred EEEEeCCcHHHHHHHHHH-cCCCceEEEEEECCH------HHHhcCCCC
Confidence 456689999999999988 775433333455663 456655444
No 189
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.67 E-value=5.6e+02 Score=23.98 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=46.1
Q ss_pred CCCcEEEEeec---------ccCHHHHHHHHHHHHHCCCeEEEeCCChhH---HHhhhHHHHHhhccCCccEEEcCHHHH
Q 018120 169 KGSKWLVLRFG---------MFNFEVIQAAIRIAKQEGLSVSMDLASFEM---VRNFRTPLLQLLESGDVDLCFANEDEA 236 (360)
Q Consensus 169 ~~~~~v~~~~~---------~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~---~~~~~~~l~~~l~~~~~dil~~n~~E~ 236 (360)
..+|.|+++.. ..+.+-+.+.++.|+++|+++.+-.+.... .+.+.+.+..+.+. .+|-|+.++-=+
T Consensus 25 ~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~-GvDaviv~Dpg~ 103 (347)
T COG0826 25 AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL-GVDAVIVADPGL 103 (347)
T ss_pred cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc-CCCEEEEcCHHH
Confidence 55788998821 134567889999999999987777764322 22344555555554 678888876655
Q ss_pred HHhh
Q 018120 237 AELV 240 (360)
Q Consensus 237 ~~l~ 240 (360)
-.+.
T Consensus 104 i~l~ 107 (347)
T COG0826 104 IMLA 107 (347)
T ss_pred HHHH
Confidence 4444
No 190
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=25.60 E-value=1.7e+02 Score=25.45 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCCcEEEEeecc-cCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 169 KGSKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 169 ~~~~~v~~~~~~-~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
...|.+.++++. +..+.+.++++..|+..+++++.|++.
T Consensus 26 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 26 SGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNP 65 (223)
T ss_pred cCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCc
Confidence 567999999544 678889999999999999999999864
No 191
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=25.59 E-value=94 Score=29.59 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=29.1
Q ss_pred CCCcEEEEe------ecccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 169 KGSKWLVLR------FGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 169 ~~~~~v~~~------~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
++.++++++ +...+++.+.++.+.|+++++.++.|-.
T Consensus 162 ~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEi 204 (393)
T COG0436 162 PKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEI 204 (393)
T ss_pred ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehh
Confidence 457788887 2345689999999999999999888874
No 192
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=25.47 E-value=2.8e+02 Score=20.46 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCcEEEEeecccC---HHHHHHHHHHHHHCC---CeEEEeCCChhHHHhhhHHHHHhhccCCccEEEc
Q 018120 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEG---LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (360)
Q Consensus 169 ~~~~~v~~~~~~~~---~~~~~~~~~~a~~~~---~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~ 231 (360)
+++|+++++...+. .+-....++.+++.+ .++++---- .+.+.+.+.+..+ .+|++++
T Consensus 35 e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~---aq~~~~~l~~~~p--~vd~v~G 98 (98)
T PF00919_consen 35 EEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCM---AQRYGEELKKEFP--EVDLVVG 98 (98)
T ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCc---cccChHHHHhhCC--CeEEEeC
Confidence 67899999932222 233333333333333 455544322 1345677888777 7888864
No 193
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.46 E-value=3.1e+02 Score=22.82 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=35.7
Q ss_pred CCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEe-CCChhHHHhhhHHHHHhhccCCccEEEcC
Q 018120 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD-LASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (360)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d-~~~~~~~~~~~~~l~~~l~~~~~dil~~n 232 (360)
..+|++.+.... +++...++++.++++|+++.++ ++... .....+.+.. .+|++..+
T Consensus 76 aGad~i~~h~~~-~~~~~~~~i~~~~~~g~~~~v~~~~~~t-----~~e~~~~~~~-~~d~v~~~ 133 (202)
T cd04726 76 AGADIVTVLGAA-PLSTIKKAVKAAKKYGKEVQVDLIGVED-----PEKRAKLLKL-GVDIVILH 133 (202)
T ss_pred cCCCEEEEEeeC-CHHHHHHHHHHHHHcCCeEEEEEeCCCC-----HHHHHHHHHC-CCCEEEEc
Confidence 467888887332 3466788999999999999876 43221 1222223332 67887763
No 194
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=25.42 E-value=1.4e+02 Score=20.03 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHH
Q 018120 298 DLFASGFLYGLVKGLSLEECCKVG 321 (360)
Q Consensus 298 D~f~ag~~~~l~~~~~l~~a~~~a 321 (360)
|+|.+|+.+++.+ .+....+..+
T Consensus 4 Daf~vg~~~g~~~-~~~~~~~~~~ 26 (67)
T PF02659_consen 4 DAFAVGISYGLRG-ISRRIILLIA 26 (67)
T ss_pred HHHHHHHHHHHHc-CChHHHHHHH
Confidence 9999999999984 4444444433
No 195
>PRK04296 thymidine kinase; Provisional
Probab=25.23 E-value=2e+02 Score=23.97 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=26.6
Q ss_pred CCcEEEEe-ecccCHHHHHHHHHHHHHCCCeEEEeC
Q 018120 170 GSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (360)
Q Consensus 170 ~~~~v~~~-~~~~~~~~~~~~~~~a~~~~~~v~~d~ 204 (360)
+.|+|+++ ..+++.+.+.++++.++..|+.+++--
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 57889998 444566667888899888998877654
No 196
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=25.08 E-value=3e+02 Score=23.53 Aligned_cols=34 Identities=9% Similarity=-0.088 Sum_probs=24.6
Q ss_pred EEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCCh
Q 018120 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (360)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 207 (360)
++.+|++. ....+..++..+|+.|.+++.=.+.+
T Consensus 90 viaiS~SG-eT~el~~~~~~aK~~g~~liaiT~~~ 123 (202)
T COG0794 90 VIAISGSG-ETKELLNLAPKAKRLGAKLIAITSNP 123 (202)
T ss_pred EEEEeCCC-cHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34455332 46788899999999999988777643
No 197
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=24.25 E-value=1.4e+02 Score=22.74 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=25.5
Q ss_pred EEEeecccCHHHHHHHHHHHHHCCCeEEEeCCC
Q 018120 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (360)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 206 (360)
+.+|+ .++.+.++.+++.+.+.|..++|---.
T Consensus 2 iFvS~-SMP~~~L~~l~~~a~~~~~~~V~RG~~ 33 (113)
T PF09673_consen 2 IFVSF-SMPDASLRNLLKQAERAGVVVVFRGFP 33 (113)
T ss_pred EEEEC-CCCHHHHHHHHHHHHhCCcEEEEECCC
Confidence 45564 358999999999999999998887643
No 198
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.02 E-value=2.9e+02 Score=24.55 Aligned_cols=30 Identities=23% Similarity=0.098 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHcCCCEEEEEeCCCceEEEE
Q 018120 246 ADSEAALEFLAKRCQWAVVTLGPNGCIAKH 275 (360)
Q Consensus 246 ~~~~~~~~~l~~~~~~vivt~G~~G~~~~~ 275 (360)
.+.+++.+.+.+..+.|+.|.|.+....|.
T Consensus 115 ~d~~ea~~~~~~~~~rVflt~G~~~l~~f~ 144 (257)
T COG2099 115 ADIEEAAEAAKQLGRRVFLTTGRQNLAHFV 144 (257)
T ss_pred cCHHHHHHHHhccCCcEEEecCccchHHHh
Confidence 356677777776668999999999876653
No 199
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=23.57 E-value=2.9e+02 Score=26.36 Aligned_cols=57 Identities=19% Similarity=0.129 Sum_probs=38.3
Q ss_pred CCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEc
Q 018120 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (360)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~ 231 (360)
..+|++.+++. ...+.+..+++.+++.|+.+.+|...+. ...+.+.++.. .+|++..
T Consensus 249 aGAD~vTVH~e-a~~~ti~~ai~~akk~GikvgVD~lnp~---tp~e~i~~l~~--~vD~Vll 305 (391)
T PRK13307 249 ATADAVVISGL-APISTIEKAIHEAQKTGIYSILDMLNVE---DPVKLLESLKV--KPDVVEL 305 (391)
T ss_pred cCCCEEEEecc-CCHHHHHHHHHHHHHcCCEEEEEEcCCC---CHHHHHHHhhC--CCCEEEE
Confidence 35788888743 2567899999999999999999855432 11233444444 6787644
No 200
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=23.56 E-value=1.1e+02 Score=27.79 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHh
Q 018120 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQF 118 (360)
Q Consensus 82 a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~ 118 (360)
.-+....|.+ .|++.+|+-.+|.|..|+.|.+.++.
T Consensus 20 ~~~~~~~~~~-~~~~a~f~~~~gpd~~g~~~~r~~~~ 55 (296)
T PRK15394 20 VPRLLEILSK-HGIQASFFFSVGPDNMGRHLWRLLKP 55 (296)
T ss_pred HHHHHHHHHH-cCCCEEEEeccCCCchhHHHHHHhhh
Confidence 4567777888 99999999999999999999887643
No 201
>PRK15452 putative protease; Provisional
Probab=23.45 E-value=6.9e+02 Score=24.28 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=43.1
Q ss_pred ccCCCcEEEEe---ec------ccCHHHHHHHHHHHHHCCCeEEEeCCChh---HHHhhhHHHHHhhccCCcc-EEEcCH
Q 018120 167 DVKGSKWLVLR---FG------MFNFEVIQAAIRIAKQEGLSVSMDLASFE---MVRNFRTPLLQLLESGDVD-LCFANE 233 (360)
Q Consensus 167 ~~~~~~~v~~~---~~------~~~~~~~~~~~~~a~~~~~~v~~d~~~~~---~~~~~~~~l~~~l~~~~~d-il~~n~ 233 (360)
.-..+|.|+++ +. ..+.+.+.++++.|+++|+++++-+.... ....+.+.+..+... .+| |++-|.
T Consensus 20 i~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~-gvDgvIV~d~ 98 (443)
T PRK15452 20 FAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAM-KPDALIMSDP 98 (443)
T ss_pred HHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhC-CCCEEEEcCH
Confidence 34689999997 22 22457788999999999999988754321 122334444444443 466 444455
Q ss_pred HHHHH
Q 018120 234 DEAAE 238 (360)
Q Consensus 234 ~E~~~ 238 (360)
..+..
T Consensus 99 G~l~~ 103 (443)
T PRK15452 99 GLIMM 103 (443)
T ss_pred HHHHH
Confidence 54443
No 202
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=23.25 E-value=2.7e+02 Score=25.97 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=26.6
Q ss_pred CCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChh
Q 018120 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (360)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~ 208 (360)
++.|++++. ++.....+++..+.+.| ..++|+++.+
T Consensus 67 ~~~DvVf~a---lP~~~s~~~~~~~~~~G-~~VIDlS~~f 102 (346)
T TIGR01850 67 EDADVVFLA---LPHGVSAELAPELLAAG-VKVIDLSADF 102 (346)
T ss_pred cCCCEEEEC---CCchHHHHHHHHHHhCC-CEEEeCChhh
Confidence 478998886 34567777777777777 6788998754
No 203
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=23.21 E-value=4.1e+02 Score=25.24 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=24.5
Q ss_pred CCCcEEEEee-cc--cCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 169 KGSKWLVLRF-GM--FNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 169 ~~~~~v~~~~-~~--~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
++.++|+++. .. ...--+.++.+.++++|+.+++|-.
T Consensus 149 ~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a 188 (398)
T PRK07504 149 PNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNV 188 (398)
T ss_pred cCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECC
Confidence 3567788761 11 1112367777888899999999986
No 204
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.64 E-value=2.2e+02 Score=18.33 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=27.2
Q ss_pred EEEEeecCC-----hhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEE
Q 018120 98 GLIGAYGDD-----QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (360)
Q Consensus 98 ~~ig~vG~D-----~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~ 140 (360)
.+++.+|.. .....+.+.|.+.|++...+.........++.+-
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~ 49 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVA 49 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 566777752 1344577889999999987765433344444443
No 205
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.63 E-value=1.7e+02 Score=21.10 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeec
Q 018120 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (360)
Q Consensus 79 GG~a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~ 124 (360)
+|.+...+..+.. .|.++.+.+.+|... +..|++.||..-
T Consensus 47 ~~~~~~~~~~l~~-~~v~~vi~~~iG~~a-----~~~l~~~gI~v~ 86 (102)
T cd00562 47 GGEGKLAARLLAL-EGCDAVLVGGIGGPA-----AAKLEAAGIKPI 86 (102)
T ss_pred CccchHHHHHHHH-CCCcEEEEcccCccH-----HHHHHHcCCEEE
Confidence 4556778888887 899999999988753 466788899863
No 206
>PRK05939 hypothetical protein; Provisional
Probab=22.16 E-value=6.8e+02 Score=23.74 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=25.6
Q ss_pred CCcEEEEe-ec--ccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~--~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|+++ .. .....-+.++.+.|+++|+.+++|-.
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t 169 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNT 169 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence 45677776 11 11235577888999999999999985
No 207
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=1.6e+02 Score=22.90 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=35.1
Q ss_pred eEecCchHHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCeec
Q 018120 75 KTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (360)
Q Consensus 75 ~~~~GG~a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~~~ 124 (360)
.....|.+.-++..|.. .|.++.+.+.+|.-.+ +.|++.||++-
T Consensus 47 ~~~~~g~G~~~a~~l~~-~gvdvvi~~~iG~~a~-----~~l~~~GIkv~ 90 (121)
T COG1433 47 ASAEKGAGIRIAELLVD-EGVDVVIASNIGPNAY-----NALKAAGIKVY 90 (121)
T ss_pred ccccCcchHHHHHHHHH-cCCCEEEECccCHHHH-----HHHHHcCcEEE
Confidence 34567778888888888 9999999999887543 67899999864
No 208
>smart00642 Aamy Alpha-amylase domain.
Probab=22.07 E-value=1.1e+02 Score=25.04 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHCCCeEEEeCCC
Q 018120 182 NFEVIQAAIRIAKQEGLSVSMDLAS 206 (360)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~v~~d~~~ 206 (360)
..+.+.++++.|+++|+.|++|+..
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999999999999999964
No 209
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.05 E-value=4.7e+02 Score=25.11 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=24.5
Q ss_pred CCcEEEEe-ecc--cCHHHHHHHHHHHHHCCCeEEEeCCC
Q 018120 170 GSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (360)
Q Consensus 170 ~~~~v~~~-~~~--~~~~~~~~~~~~a~~~~~~v~~d~~~ 206 (360)
+.++|++. ... ....-+.++.+.++++|+.+++|-..
T Consensus 148 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~ 187 (427)
T PRK05994 148 RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTL 187 (427)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCc
Confidence 45677775 111 11122567888899999999999863
No 210
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=21.93 E-value=3.8e+02 Score=24.92 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=26.9
Q ss_pred ccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeCCChh
Q 018120 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (360)
Q Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~ 208 (360)
...+.|++++. ++.+...+++..+.+.| ..++|+++.+
T Consensus 65 ~~~~vD~Vf~a---lP~~~~~~~v~~a~~aG-~~VID~S~~f 102 (343)
T PRK00436 65 ILAGADVVFLA---LPHGVSMDLAPQLLEAG-VKVIDLSADF 102 (343)
T ss_pred HhcCCCEEEEC---CCcHHHHHHHHHHHhCC-CEEEECCccc
Confidence 34668998886 34567777777776666 5778998754
No 211
>PRK06234 methionine gamma-lyase; Provisional
Probab=21.92 E-value=5e+02 Score=24.65 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=14.4
Q ss_pred HHHHHHHHHHC--CCeEEEeCC
Q 018120 186 IQAAIRIAKQE--GLSVSMDLA 205 (360)
Q Consensus 186 ~~~~~~~a~~~--~~~v~~d~~ 205 (360)
+.++.+.++++ ++.+++|-.
T Consensus 168 l~~I~~la~~~~~~i~livDea 189 (400)
T PRK06234 168 IKAISNIAHENNKECLVFVDNT 189 (400)
T ss_pred HHHHHHHHHhcCCCCEEEEECC
Confidence 56666777775 788888875
No 212
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=21.78 E-value=5.2e+02 Score=23.32 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCChhH---HHhhhHHHHHhhccCCccEEEcC
Q 018120 184 EVIQAAIRIAKQEGLSVSMDLASFEM---VRNFRTPLLQLLESGDVDLCFAN 232 (360)
Q Consensus 184 ~~~~~~~~~a~~~~~~v~~d~~~~~~---~~~~~~~l~~~l~~~~~dil~~n 232 (360)
..+.++++.+++.|.+|++|.---.+ ...+-+.+.+- +. .+|.+..|
T Consensus 73 ~~l~~~i~~l~~~g~~VilD~K~~DI~nTv~~ya~a~~~~-~~-g~DavTVh 122 (278)
T PRK00125 73 AQLERTIAYLREAGVLVIADAKRGDIGSTAEAYAKAAFES-PL-EADAVTVS 122 (278)
T ss_pred hHHHHHHHHHHHCCCcEEEEeecCChHHHHHHHHHHHhcC-cc-CCcEEEEC
Confidence 46777899999999999999953322 22333332210 22 57888887
No 213
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.69 E-value=2.5e+02 Score=18.55 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCeeceeeecCCCCeeEEEEEc
Q 018120 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141 (360)
Q Consensus 109 g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~ 141 (360)
...+.+.|.+.||+...+.....+...++.+-+
T Consensus 17 ~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~ 49 (65)
T cd04918 17 LERAFHVLYTKGVNVQMISQGASKVNISLIVND 49 (65)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccceEEEEEeH
Confidence 456677889999998877665555555555433
No 214
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=21.63 E-value=1.1e+02 Score=27.21 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEEEeeccc--CH
Q 018120 106 DQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMF--NF 183 (360)
Q Consensus 106 D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 183 (360)
|.++.+|.+.|.+.|++..++.... |....+.. . -....+++|+|+++++.- +.
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~Vg------------D~~~~I~~-----------~-l~~a~~r~D~vI~tGGLGPT~D 75 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVG------------DNPDRIVE-----------A-LREASERADVVITTGGLGPTHD 75 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecC------------CCHHHHHH-----------H-HHHHHhCCCEEEECCCcCCCcc
Confidence 4699999999999999988664321 11111110 0 112345689999994443 35
Q ss_pred HHHHHHHHHHHHCCCeEEEeC
Q 018120 184 EVIQAAIRIAKQEGLSVSMDL 204 (360)
Q Consensus 184 ~~~~~~~~~a~~~~~~v~~d~ 204 (360)
+...+.+ |+..|.+.++|.
T Consensus 76 DiT~e~v--Aka~g~~lv~~~ 94 (255)
T COG1058 76 DLTAEAV--AKALGRPLVLDE 94 (255)
T ss_pred HhHHHHH--HHHhCCCcccCH
Confidence 6666554 445677888886
No 215
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=21.54 E-value=2.1e+02 Score=17.55 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhCCCeeceeeecCCCCeeEEEE
Q 018120 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL 139 (360)
Q Consensus 108 ~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~ 139 (360)
.-..+.+.|.+.+++...+.........++.+
T Consensus 16 ~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v 47 (60)
T cd04868 16 VAAKIFSALAEAGINVDMISQSESEVNISFTV 47 (60)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEE
Confidence 44567788999999998776543323333433
No 216
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.37 E-value=3.6e+02 Score=25.90 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=26.9
Q ss_pred EecCchHHHHHHHHHhhcCCceEEEEeecCChhHHHHHHHHHhCCCe
Q 018120 76 TIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD 122 (360)
Q Consensus 76 ~~~GG~a~N~a~~la~~lG~~v~~ig~vG~D~~g~~i~~~l~~~gv~ 122 (360)
.-.|+.+.-.|..|+. .|.+|+++..-..+.. +...+.|.+.|++
T Consensus 11 iG~g~~G~~~A~~l~~-~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 11 VGAGVSGLALAKFLKK-LGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred ECCCHHHHHHHHHHHH-CCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 3456677778888887 8999887644222222 2223445666665
No 217
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=21.36 E-value=1.9e+02 Score=18.71 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=26.4
Q ss_pred EEEEeecCC-----hhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEE
Q 018120 98 GLIGAYGDD-----QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (360)
Q Consensus 98 ~~ig~vG~D-----~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~ 140 (360)
.+++.+|.+ .....+.+.|.+.||+...+.........++.+-
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~ 49 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVID 49 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEe
Confidence 355566631 2455677889999999987765333344444443
No 218
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=21.31 E-value=5.2e+02 Score=23.75 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=34.7
Q ss_pred cccCCCcEEEEeec-c----cC---HHHHHHHHHHHHHCCCeEEEeCC--Ch-----hHHHhhhHHHHHhhccCCccEEE
Q 018120 166 EDVKGSKWLVLRFG-M----FN---FEVIQAAIRIAKQEGLSVSMDLA--SF-----EMVRNFRTPLLQLLESGDVDLCF 230 (360)
Q Consensus 166 ~~~~~~~~v~~~~~-~----~~---~~~~~~~~~~a~~~~~~v~~d~~--~~-----~~~~~~~~~l~~~l~~~~~dil~ 230 (360)
+.|.++|+++++.+ + +| ..-+.++++..+ ..+|++-.. .+ ....++-+.+.+.+..+.+|++.
T Consensus 168 ~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~--a~kV~v~N~~tq~gEt~g~~~~dhv~~i~~~~g~~~~D~vl 245 (310)
T TIGR01826 168 EAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESK--APKVYVCNLMTQPGETDGFSLEDHVDALHRHLGKPFIDTVL 245 (310)
T ss_pred HHHHhCCEEEECCCcCHHHhchhcCchhHHHHHHhCC--CCEEEEeCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCEEE
Confidence 46899999999922 1 12 233333333322 233443332 11 12334445555555433589999
Q ss_pred cCHHH
Q 018120 231 ANEDE 235 (360)
Q Consensus 231 ~n~~E 235 (360)
.|...
T Consensus 246 vn~~~ 250 (310)
T TIGR01826 246 VNTEK 250 (310)
T ss_pred ECCCC
Confidence 88654
No 219
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=21.29 E-value=2.9e+02 Score=26.02 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=49.2
Q ss_pred EEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEEEee
Q 018120 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178 (360)
Q Consensus 99 ~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 178 (360)
.+|.+|..+.|+++...-+..|+++.-+...+.... .- +. ++.+..... ..+. ..+....+|++-+.+
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA--~~-va---~~~i~~~~d-----D~~a-l~ela~~~DViT~Ef 70 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPA--AQ-VA---DRVIVAAYD-----DPEA-LRELAAKCDVITYEF 70 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCch--hh-cc---cceeecCCC-----CHHH-HHHHHhhCCEEEEee
Confidence 489999999999999999999999765443222111 11 10 112211100 0111 134567889999887
Q ss_pred cccCHHHHHHHHHH
Q 018120 179 GMFNFEVIQAAIRI 192 (360)
Q Consensus 179 ~~~~~~~~~~~~~~ 192 (360)
..++.+.+..+.+.
T Consensus 71 E~V~~~aL~~l~~~ 84 (375)
T COG0026 71 ENVPAEALEKLAAS 84 (375)
T ss_pred ccCCHHHHHHHHhh
Confidence 77777776666554
No 220
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=21.28 E-value=3.6e+02 Score=25.51 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=25.4
Q ss_pred CCcEEEEe-ec--ccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~--~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|+++ .. .....-+.++.+.++++|+.+++|-.
T Consensus 146 ~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a 184 (388)
T PRK07811 146 RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNT 184 (388)
T ss_pred CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECC
Confidence 45677776 11 12245677788889999999999985
No 221
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=21.27 E-value=6.8e+02 Score=24.96 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=49.4
Q ss_pred CCcEEEEeecccCHHHHHHHHHHHHHCCCeEEE---eCCChhHHHhhhHHHHHhhccCCccEEEcC-----HHHHHHhhc
Q 018120 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSM---DLASFEMVRNFRTPLLQLLESGDVDLCFAN-----EDEAAELVR 241 (360)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~---d~~~~~~~~~~~~~l~~~l~~~~~dil~~n-----~~E~~~l~~ 241 (360)
.+|++=+... ..+...+.+..++..+.++++ |.......+.+...+.++... .+||++.- .++...++.
T Consensus 110 ~~d~iDiEl~--~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~-gaDi~Kia~~~~~~~D~~~ll~ 186 (529)
T PLN02520 110 GADYVDVELK--VAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQAT-GADIVKIATTALDITDVARMFQ 186 (529)
T ss_pred CCCEEEEEcC--CchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHh-CCCEEEEecCCCCHHHHHHHHH
Confidence 3577766622 234566777788888888888 543322223344444444442 57888872 223222221
Q ss_pred CCCCCcHHHHHHHHHcCCCEEEEEeCCCceE
Q 018120 242 GEENADSEAALEFLAKRCQWAVVTLGPNGCI 272 (360)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~vivt~G~~G~~ 272 (360)
.......+.+.+.||+.|.+
T Consensus 187 -----------~~~~~~~p~i~~~MG~~G~~ 206 (529)
T PLN02520 187 -----------ITVHSQVPTIGLVMGERGLI 206 (529)
T ss_pred -----------HHhhcCCCEEEEecCCCCch
Confidence 01112456788899999954
No 222
>PRK13018 cell division protein FtsZ; Provisional
Probab=21.23 E-value=3.5e+02 Score=25.63 Aligned_cols=145 Identities=21% Similarity=0.225 Sum_probs=69.1
Q ss_pred ceEecCchHHHHHHHHHhhcCCc-eEEEEeecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeeccc
Q 018120 74 IKTIAGGSVTNTIRGLSVGFGVP-CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL 152 (360)
Q Consensus 74 ~~~~~GG~a~N~a~~la~~lG~~-v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~ 152 (360)
...-.||++.|+.-.+.. .|.+ +.|+ .+-.|. +.|.....+.. +...+..|.- ....++...- .
T Consensus 32 ~ViGvGGaG~N~v~~m~~-~~~~~v~~i-aiNTD~------q~L~~~~a~~k-i~iG~~~t~G----~GaG~dp~~G-~- 96 (378)
T PRK13018 32 VVVGCGGAGNNTINRLYE-IGIEGAETI-AINTDA------QHLAMIKADKK-ILIGKSLTRG----LGAGGDPEVG-R- 96 (378)
T ss_pred EEEEeCCcHHHHHHHHHH-cCCCCceEE-EEECCH------HHHhcCCCCcE-EecCCccCCC----CCCCCChHHH-H-
Confidence 456689999999999987 7755 5554 455663 45555444432 2221111100 0011111110 0
Q ss_pred ccccCCCcccCCccccCCCcEEEEee---cccCHHHHHHHHHHHHHCCCeEEEeCCChhHH------HhhhHHHHHhhcc
Q 018120 153 SNAVKIQADELIAEDVKGSKWLVLRF---GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMV------RNFRTPLLQLLES 223 (360)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~------~~~~~~l~~~l~~ 223 (360)
.......+.+ .+.++++|.+++.. +..-.-...-+++.+++.+..++--...|+.. .+-...+.++.+
T Consensus 97 -~aaee~~d~I-~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e- 173 (378)
T PRK13018 97 -KAAEESRDEI-KEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLRE- 173 (378)
T ss_pred -HHHHHHHHHH-HHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHH-
Confidence 0001111122 34578899988871 11122344556677788776544222222211 112245556665
Q ss_pred CCccEEE--cCHHHHH
Q 018120 224 GDVDLCF--ANEDEAA 237 (360)
Q Consensus 224 ~~~dil~--~n~~E~~ 237 (360)
++|.++ .|+.=.+
T Consensus 174 -~~D~vividNd~L~~ 188 (378)
T PRK13018 174 -AADTVIVIDNNRLLD 188 (378)
T ss_pred -hCCEEEEEecHHHHH
Confidence 555554 4654443
No 223
>PLN02509 cystathionine beta-lyase
Probab=21.07 E-value=7e+02 Score=24.38 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=26.6
Q ss_pred CCcEEEEe-ec--ccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 170 GSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 170 ~~~~v~~~-~~--~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.++|++. .. .....-+.++.+.|+++|+.+++|-.
T Consensus 217 ~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A 255 (464)
T PLN02509 217 QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNS 255 (464)
T ss_pred CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 45677777 21 12346678888999999999999986
No 224
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.92 E-value=2e+02 Score=25.45 Aligned_cols=26 Identities=31% Similarity=0.240 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHcCCCEEEEEeCCCceE
Q 018120 246 ADSEAALEFLAKRCQWAVVTLGPNGCI 272 (360)
Q Consensus 246 ~~~~~~~~~l~~~~~~vivt~G~~G~~ 272 (360)
++.+++.+.+.+. +.|+.|.|.+..-
T Consensus 115 ~s~~~a~~~l~~~-~~vllttGsk~l~ 140 (248)
T PRK08057 115 DDIEEAAEALAPF-RRVLLTTGRQPLA 140 (248)
T ss_pred CCHHHHHHHhhcc-CCEEEecCcchHH
Confidence 3567777777666 7899999998743
No 225
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=20.69 E-value=5.8e+02 Score=22.32 Aligned_cols=36 Identities=14% Similarity=-0.052 Sum_probs=23.9
Q ss_pred cccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEe
Q 018120 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD 203 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d 203 (360)
+.++++|+|+... -+.+....+-+.+++.+++++.-
T Consensus 110 ~~~~~~DlVvd~~--D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 110 ALIAEHDIVVDCT--DNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred HHhhcCCEEEEcC--CCHHHHHHHHHHHHHcCCCEEEE
Confidence 3467788877652 23555566667788888887753
No 226
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=20.62 E-value=3.9e+02 Score=22.88 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=62.7
Q ss_pred ecCChhHHHHHHHHHhCCCeeceeeecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCccccCCCcEEEEeec---
Q 018120 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFG--- 179 (360)
Q Consensus 103 vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 179 (360)
+||+.....+++.|++.+.+...+.....+......... ...... . ...............+++.+++.++
T Consensus 2 ~GD~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~---~~~~~~~~~~~~~~~~~~~vii~GGg~~ 75 (286)
T PF04230_consen 2 IGDDLILEALLKLLKKHGPDAEIIIFSPDPDEFSKYYKN--KSIFNI-D---LSKLWRKRRRKSKIKNADDVIIGGGGGS 75 (286)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEEeCCChHHHHHHhcc--cccchh-h---hhhhhhhhhcccccccCCeEEEECCccc
Confidence 578878888999999999777765554332110000000 000000 0 0000000000000145666676644
Q ss_pred -c--cCHH---HHHHHHHHHHHCCCeEEEeCCCh--hHHHhhhHHHHHhhccCCccEEEcCHHHH
Q 018120 180 -M--FNFE---VIQAAIRIAKQEGLSVSMDLASF--EMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (360)
Q Consensus 180 -~--~~~~---~~~~~~~~a~~~~~~v~~d~~~~--~~~~~~~~~l~~~l~~~~~dil~~n~~E~ 236 (360)
. .... ........++..+.++++=..+. ......+..+..++. .++++.+=++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~--~~~~i~vRD~~S 138 (286)
T PF04230_consen 76 DNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILS--KADYISVRDEYS 138 (286)
T ss_pred ccCCCcchhhHHHHHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHh--CCCEEEECCHHH
Confidence 1 1111 23556667788888877666543 222344556667777 788877755443
No 227
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=20.61 E-value=4.4e+02 Score=24.23 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=79.6
Q ss_pred CeEEEecCCeeEEEEeecCHhHHhhCCCCCCCccccCHHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhcCC
Q 018120 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (360)
Q Consensus 16 ~~i~~iG~~~~lD~i~~~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~lG~ 95 (360)
|++++|. ..++|-+...+ +.++-.++ .+...+..+. -..+|...|+ -|.
T Consensus 113 pdl~vi~-DVcLc~YT~hG-----HcGil~~g-~i~ND~Tl~~-----------------------L~~~Als~A~-AGA 161 (322)
T PRK13384 113 PEMMVIP-DICFCEYTDHG-----HCGVLHND-EVDNDATVEN-----------------------LVKQSVTAAK-AGA 161 (322)
T ss_pred CCeEEEe-eeecccCCCCC-----ceeeccCC-cCccHHHHHH-----------------------HHHHHHHHHH-cCC
Confidence 7899999 99999888875 55543321 1222222222 2346777787 888
Q ss_pred ceEEEEeecCChhHHHHHHHHHhCCCeeceeeecCC--CCeeEEEEEc-----CCCceeeecccccccCCCcccCCcccc
Q 018120 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG--PTGQCVCLVD-----ASGNRTMRPCLSNAVKIQADELIAEDV 168 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~--~t~~~~~~~~-----~~g~r~~~~~~~~~~~~~~~~~~~~~~ 168 (360)
++.-=+-.=+ .-=..|++.|.+.|..-..|-.-.. .+..|-=|.+ +.|+|.-+-...++......+...+.-
T Consensus 162 DiVAPSdMMD-GrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~ 240 (322)
T PRK13384 162 DMLAPSAMMD-GQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEA 240 (322)
T ss_pred CeEecccccc-cHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHh
Confidence 8654433333 3456789999999984333322221 1222222222 123333221111221111112223445
Q ss_pred CCCcEEEEeecccCHHHHHHHHHHHHHC-CCeE-EEeCCC
Q 018120 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSV-SMDLAS 206 (360)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~-~~~v-~~d~~~ 206 (360)
+.+|++.+-+++ .+.++++.++++ +.++ ....|+
T Consensus 241 EGAD~lMVKPal----~YLDIi~~~k~~~~lPvaaYqVSG 276 (322)
T PRK13384 241 EGADILMVKPGT----PYLDVLSRLRQETHLPLAAYQVGG 276 (322)
T ss_pred hCCCEEEEcCCc----hHHHHHHHHHhccCCCEEEEEchH
Confidence 788888887433 456666666653 4444 456654
No 228
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=20.53 E-value=5.2e+02 Score=21.75 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=26.7
Q ss_pred cccCCCcEEEEeecccCHHHHHHHHHHHHHCCCeEEEeC
Q 018120 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (360)
Q Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~ 204 (360)
+.++++|+++.. ..+......+-+.+++++++++.--
T Consensus 109 ~~~~~~dvVi~~--~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 109 EYLQKFTLVIAT--EENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HHHhCCCEEEEC--CCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 346778888876 2246677778889999998877543
No 229
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=20.50 E-value=2.4e+02 Score=25.27 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=31.6
Q ss_pred ccC-CCcEEEEe-ecccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 167 DVK-GSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 167 ~~~-~~~~v~~~-~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
.++ ..|++++| +.+..++...++.+.|++.|.++++=.+
T Consensus 82 iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 82 CLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred HHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeCh
Confidence 344 78999999 6666788899999999999999888544
No 230
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.46 E-value=1.7e+02 Score=28.81 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=81.2
Q ss_pred ceEEEEeecCChhHHHHH-HHHHhCCCeeceeeecCC-C--CeeEEEEEcCCCceeeecccccccCCCcccCCccccCCC
Q 018120 96 PCGLIGAYGDDQQGQLFV-SNMQFSGVDVSRLRMKRG-P--TGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (360)
Q Consensus 96 ~v~~ig~vG~D~~g~~i~-~~l~~~gv~~~~i~~~~~-~--t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (360)
++.++-..|.|--+..++ +.|+++||..++....++ | ---+++|+.++.++.-.. .+++.. .-+
T Consensus 42 KVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPAVYFV~Pt~eNid~i---------~~Dl~~---~lY 109 (621)
T KOG1301|consen 42 KVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPAVYFVSPTEENIDRI---------IQDLSK---GLY 109 (621)
T ss_pred EEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCeEEEeCCchHhHHHH---------HHHHHH---hhh
Confidence 566777788877666665 789999999987766554 2 222334444443322100 011111 224
Q ss_pred cEEEEe-ecccCHHHHHHHHHHHHHCCCeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHHHhh--------cC
Q 018120 172 KWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV--------RG 242 (360)
Q Consensus 172 ~~v~~~-~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~~l~--------~~ 242 (360)
+-.|++ .+.++...+..+...+.+.|... +.+....+ +.+++..-. ++-.|. ..
T Consensus 110 ~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~-----------~I~kVyDQ-----YlnFI~LEd-dlFsL~~~~~~~~~n~ 172 (621)
T KOG1301|consen 110 DSYYLNFISSISRSLLEDLASAASETGAVL-----------QIHKVYDQ-----YLNFIVLED-DLFSLGMQNSFHAINR 172 (621)
T ss_pred hhheeeccccccHHHHHHHHHHHhhcchHH-----------HHHHHHHh-----Hhhheeecc-hhhhhcccccchhccC
Confidence 555666 34567888888888887766321 11222222 333333321 111111 11
Q ss_pred CCC--CcHHHHHHHHHcCCCEEEEEeCCCceEEEECCE
Q 018120 243 EEN--ADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (360)
Q Consensus 243 ~~~--~~~~~~~~~l~~~~~~vivt~G~~G~~~~~~~~ 278 (360)
++. ......++.+..+.=.|++|+|.-+.+-..+|.
T Consensus 173 p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~ 210 (621)
T KOG1301|consen 173 PSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGG 210 (621)
T ss_pred CCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCC
Confidence 111 112233444555666788999988887776664
No 231
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.44 E-value=1.3e+02 Score=26.79 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=25.5
Q ss_pred EEEEeecccCHHHHHHHHHHHHHCCCeEEEeCC
Q 018120 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (360)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 205 (360)
+.-++...-..+.++++++.|+++|+.|++|..
T Consensus 41 ~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 41 YYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp EEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eeccccccchhhhhhhhhhccccccceEEEeee
Confidence 344452222478899999999999999999995
No 232
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=20.43 E-value=2.9e+02 Score=23.66 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCCcEEEEeecc-cCHHHHHHHHHHHHH-CCCeEEEeCCCh
Q 018120 169 KGSKWLVLRFGM-FNFEVIQAAIRIAKQ-EGLSVSMDLASF 207 (360)
Q Consensus 169 ~~~~~v~~~~~~-~~~~~~~~~~~~a~~-~~~~v~~d~~~~ 207 (360)
..+|.+.++++. +..+.+.++++.+|+ ..+++++.|++.
T Consensus 23 ~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~ 63 (205)
T TIGR01769 23 AGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNV 63 (205)
T ss_pred cCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCc
Confidence 347999998443 578888889999988 679999999864
No 233
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=20.24 E-value=4e+02 Score=20.30 Aligned_cols=63 Identities=14% Similarity=0.011 Sum_probs=37.1
Q ss_pred CCCcEEEEeecccCHHHHHHHHHHHHHCC--CeEEEeCCChhHHHhhhHHHHHhhccCCccEEEcCHHHHH
Q 018120 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (360)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~~--~~v~~d~~~~~~~~~~~~~l~~~l~~~~~dil~~n~~E~~ 237 (360)
.++|+|.++..........++++..|+.+ +++++-- +... ...+.+ .... .+|++...+-|..
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG--~~~t-~~p~~~-~~~~--~~D~vv~GEgE~~ 102 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGG--PHAT-FFPEEI-LEEP--GVDFVVIGEGEET 102 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECC--cchh-hCHHHH-hcCC--CCCEEEECCcHHH
Confidence 57899999933334456777888888865 4554433 2211 122222 1122 7899999887743
No 234
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.15 E-value=1.6e+02 Score=28.19 Aligned_cols=114 Identities=25% Similarity=0.228 Sum_probs=64.0
Q ss_pred HHHHHHHHhhhcccCCCCCCCceEecCchHHHHHHHHHhhc--CCceEEEEeecCChhH---HHHHHHHHhCCCeeceee
Q 018120 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF--GVPCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLR 127 (360)
Q Consensus 53 ~~~~~~l~~~~~~~~~~~~~~~~~~~GG~a~N~a~~la~~l--G~~v~~ig~vG~D~~g---~~i~~~l~~~gv~~~~i~ 127 (360)
...+++.+...... ....-.+.|-++-.+..++- + |..+... +|-|| +.+...+++.||++.++.
T Consensus 65 ~~~lE~~~a~LEg~-----~~~~afsSGmaAI~~~~l~l-l~~GD~vl~~----~~~YG~t~~~~~~~l~~~gi~~~~~d 134 (396)
T COG0626 65 RDALEEALAELEGG-----EDAFAFSSGMAAISTALLAL-LKAGDHVLLP----DDLYGGTYRLFEKILQKFGVEVTFVD 134 (396)
T ss_pred HHHHHHHHHHhhCC-----CcEEEecCcHHHHHHHHHHh-cCCCCEEEec----CCccchHHHHHHHHHHhcCeEEEEEC
Confidence 34444444444421 24667777877777766664 5 3333322 22333 445566788888877542
Q ss_pred ecCCCCeeEEEEEcCCCceeeecccccccCCCcccCCcccc-CCCcEEEEe-ecc--cCHHHHHHHHHHHHHCCCeEEEe
Q 018120 128 MKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV-KGSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMD 203 (360)
Q Consensus 128 ~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~-~~~--~~~~~~~~~~~~a~~~~~~v~~d 203 (360)
.. +.+.. ..... ++.++|++. .+. +.-.-+..+.+.|++.|+.+++|
T Consensus 135 ~~-------------~~~~~----------------~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVD 185 (396)
T COG0626 135 PG-------------DDEAL----------------EAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVD 185 (396)
T ss_pred CC-------------ChHHH----------------HHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEE
Confidence 11 11110 01112 356788888 222 22355678888999999999999
Q ss_pred CC
Q 018120 204 LA 205 (360)
Q Consensus 204 ~~ 205 (360)
-.
T Consensus 186 NT 187 (396)
T COG0626 186 NT 187 (396)
T ss_pred CC
Confidence 85
Done!