Query 018122
Match_columns 360
No_of_seqs 232 out of 775
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 5.1E-64 1.1E-68 502.6 17.1 267 53-355 76-393 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 1.8E-47 3.9E-52 358.1 7.9 223 57-313 1-244 (244)
3 KOG0799 Branching enzyme [Carb 100.0 1.5E-34 3.2E-39 293.1 18.8 264 55-352 103-410 (439)
4 cd06439 CESA_like_1 CESA_like_ 75.5 14 0.00031 33.7 8.0 103 49-166 23-133 (251)
5 PRK11204 N-glycosyltransferase 73.1 62 0.0014 32.4 12.6 43 51-93 50-93 (420)
6 TIGR03472 HpnI hopanoid biosyn 69.3 72 0.0016 31.7 12.0 102 52-164 38-148 (373)
7 PRK14583 hmsR N-glycosyltransf 63.3 52 0.0011 33.6 9.8 95 52-154 72-169 (444)
8 TIGR03469 HonB hopene-associat 50.6 2.7E+02 0.0058 27.8 16.4 116 51-173 36-167 (384)
9 cd04184 GT2_RfbC_Mx_like Myxoc 31.9 1.9E+02 0.004 25.0 7.0 39 55-93 1-41 (202)
10 PF13641 Glyco_tranf_2_3: Glyc 28.5 88 0.0019 27.8 4.4 38 55-92 1-39 (228)
11 TIGR03111 glyc2_xrt_Gpos1 puta 28.2 6.1E+02 0.013 25.8 10.9 41 52-92 46-89 (439)
12 cd04192 GT_2_like_e Subfamily 26.6 2.6E+02 0.0055 24.5 7.0 95 60-165 2-105 (229)
13 cd02525 Succinoglycan_BP_ExoA 26.1 4.6E+02 0.0099 23.2 10.0 95 56-165 1-104 (249)
14 cd02520 Glucosylceramide_synth 25.3 4.5E+02 0.0098 22.8 10.7 40 55-94 1-41 (196)
15 cd02514 GT13_GLCNAC-TI GT13_GL 24.0 4E+02 0.0086 26.7 8.4 152 57-212 2-174 (334)
16 PLN03153 hypothetical protein; 22.0 4.4E+02 0.0096 28.2 8.5 90 115-215 184-279 (537)
17 cd06421 CESA_CelA_like CESA_Ce 20.0 6E+02 0.013 22.2 9.5 97 55-165 1-107 (234)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=5.1e-64 Score=502.56 Aligned_cols=267 Identities=19% Similarity=0.210 Sum_probs=214.4
Q ss_pred CCCcEEEEEEeC-CCCC-HHHHHHHHhcCCCCceEEEEEeCCCCcccC------C-------CCccceeeccccCCccee
Q 018122 53 QKPKIAFLFIAR-NRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFSK------G-------TTRSIYFLDRQVNDSIQV 117 (360)
Q Consensus 53 ~~~KiAfLIlah-~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~~~~~------~-------~~~~~~F~~r~i~~r~~V 117 (360)
.+||+||||++| ++.+ ++||++++ +++++.||||+|++++..+ . ....++++ +.++..|
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aL---YhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~v---l~k~~~V 149 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRAL---YHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYM---ITKANLV 149 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHh---cCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEE---Eecceee
Confidence 579999999998 6666 89999986 4788999999999975321 0 01123332 2578899
Q ss_pred ecCCccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHH-HHHhc-CCCccEeccCCCCC---CcccCCc----
Q 018122 118 DWGGASMIEAERILLRHALA-DPFNDRFVFLSDSCIPLYNFSYTY-NYIMS-TSTSFVDSFADTKE---GRYNPKM---- 187 (360)
Q Consensus 118 ~WGg~SlV~Atl~Ll~~AL~-d~~~d~FvlLSgsD~PL~s~~~I~-~~L~~-~~~sFIe~~~~~~~---~Ry~~~~---- 187 (360)
+|||+|||+|||++|+.+|+ ..+|||||||||+||||+|+++|. .|+.. +|+|||++.++.++ .|+.+.+
T Consensus 150 ~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pg 229 (421)
T PLN03183 150 TYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPG 229 (421)
T ss_pred ccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCc
Confidence 99999999999999999998 678999999999999999999965 55555 68999999875433 2322210
Q ss_pred --------------CCCCC-cccccccCceeeecHHHHHHhHcCCcch-hHHHHhhhccCCccccccCCCCCCCCCCCcc
Q 018122 188 --------------APVIP-VHNWRKGSQWAVLTRKHAEIVVNDTTVF-PMFQQHCKRKSLPEFWREHSFPADPSKEHNC 251 (360)
Q Consensus 188 --------------~p~ip-~~~~~~GSqW~~LtR~~ae~vl~d~~~~-~~F~~~c~~~~~~~~w~~~~~p~~~~~~~~~ 251 (360)
.+.+| ..++++||+||+|||++|+||++.++-. +... |++++++
T Consensus 230 l~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll--------------------~y~~~t~ 289 (421)
T PLN03183 230 LYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLL--------------------MYYTNFV 289 (421)
T ss_pred eeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHH--------------------HHHhcCC
Confidence 12346 4789999999999999999999864321 1111 2235688
Q ss_pred cCCchHHHHHHhCCC-CCCCcccCCeEEEecCCCCCCCCCCCCCCccccccCCCC------HHHHHHhhhccCcccccch
Q 018122 252 IPDEHYVQTLLAQEG-LEGELTRRSLTYSSWDLSSSKDHERRGWHPATYKYADAT------PLLIQSIKVCISLSLSLTD 324 (360)
Q Consensus 252 ~pDE~yfqTlL~ns~-~~~~i~n~~LrYidW~~~~~~~~~~~~~hP~~l~~~D~~------~~~~~~~~~~~~~~~~l~~ 324 (360)
+|||+||||+|+|++ |+++++|+|||||+|+++ +++||++|+.+|+. +.|+|||+.++ ++||+
T Consensus 290 ~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~-------~~~~P~~l~~~D~~~l~~S~~lFARKFd~d~---~vl~~ 359 (421)
T PLN03183 290 SSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNP-------PKQHPHTLSLNDTEKMIASGAAFARKFRRDD---PVLDK 359 (421)
T ss_pred CCchHHHHHHHhhcccccccccCCceeEEecCCC-------CCCCCcccCHHHHHHHHhCCCccccCCCCCh---HHHHH
Confidence 999999999999996 999999999999999952 56799999999973 46899999854 48999
Q ss_pred hhhhhhcccCcc-cccceecc--ccccccCccee
Q 018122 325 IKDNLLSHYCVA-ILCIWFLY--ITLRVGNINVI 355 (360)
Q Consensus 325 i~~~ll~~~~~~-~~~~~~~~--~~~~~~~~~~~ 355 (360)
||++||+|..+. +|||||.| +|+++||++++
T Consensus 360 Id~~ll~r~~~~~~~g~wc~~~~~c~~~~~~~~~ 393 (421)
T PLN03183 360 IDKELLGRKNGSFTPGGWCSGKPKCSRVGDPAKI 393 (421)
T ss_pred HHHHHhCCCCCCccCCcccCCCCcccccCCcCcc
Confidence 999999998866 99999999 99999999986
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.8e-47 Score=358.11 Aligned_cols=223 Identities=31% Similarity=0.527 Sum_probs=147.8
Q ss_pred EEEEEEeCC-CCC-HHHHHHHHhcCCCCceEEEEEeCCCCcc---c---C--CCCccceeeccccCCcceeecCCccHHH
Q 018122 57 IAFLFIARN-RLP-LEMVWDKFFKGEESRFSIYVHSRPGFLF---S---K--GTTRSIYFLDRQVNDSIQVDWGGASMIE 126 (360)
Q Consensus 57 iAfLIlah~-~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~~~---~---~--~~~~~~~F~~r~i~~r~~V~WGg~SlV~ 126 (360)
|||||+||+ +++ +++|++.++ ++.+.++||+|++++. + . ....++.|+ ++|+.|.|||+|+|+
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~---~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v----~~r~~v~WG~~S~v~ 73 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY---HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFV----PKRVDVRWGGFSLVE 73 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH-----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-----SS-----TTSHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc---CCCCEEEEEEcCCCChHHHHHHHHhcccCCceeec----ccccccccCCccHHH
Confidence 799999988 666 788877753 5677889999998531 1 0 112333344 679999999999999
Q ss_pred HHHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhcC--CCccEeccCCCCC---CcccCC-c---CCCCCcccc
Q 018122 127 AERILLRHALA-DPFNDRFVFLSDSCIPLYNFSYTYNYIMST--STSFVDSFADTKE---GRYNPK-M---APVIPVHNW 196 (360)
Q Consensus 127 Atl~Ll~~AL~-d~~~d~FvlLSgsD~PL~s~~~I~~~L~~~--~~sFIe~~~~~~~---~Ry~~~-~---~p~ip~~~~ 196 (360)
||+.||++|++ +++|+|||||||+||||+|+++|.+||+.+ +.+|+++...++. .||.+. + .+.++..++
T Consensus 74 A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 153 (244)
T PF02485_consen 74 ATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTL 153 (244)
T ss_dssp HHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--
T ss_pred HHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccc
Confidence 99999999999 789999999999999999999999999986 5788998876533 455544 1 122233488
Q ss_pred cccCceeeecHHHHHHhHcCCcchhHHHHhhhccCCccccccCCCCCCCCCCCcccCCchHHHHHHhCC-CCCCCcccCC
Q 018122 197 RKGSQWAVLTRKHAEIVVNDTTVFPMFQQHCKRKSLPEFWREHSFPADPSKEHNCIPDEHYVQTLLAQE-GLEGELTRRS 275 (360)
Q Consensus 197 ~~GSqW~~LtR~~ae~vl~d~~~~~~F~~~c~~~~~~~~w~~~~~p~~~~~~~~~~pDE~yfqTlL~ns-~~~~~i~n~~ 275 (360)
++|||||+|||++|+||+.+....+.|..+| +++++|||+||||||+|+ .+++++++++
T Consensus 154 ~~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~--------------------~~~~~pDE~ffqTll~n~~~~~~~~~~~~ 213 (244)
T PF02485_consen 154 YKGSQWFSLTRDFVEYILDDPNYRPKLKKYF--------------------RFSLCPDESFFQTLLNNSGHFKDTIVNRN 213 (244)
T ss_dssp EEE-S--EEEHHHHHHHHH-HHHHHHHHHHT---------------------TSSSGGGTHHHHH--SSGGG-B-TTTSS
T ss_pred cccceeeEeeHHHHHHhhhhHHHHHHHHHhh--------------------cCccCcchhhHHHhhcccchhcccccCCC
Confidence 9999999999999999998888888887776 367999999999999999 7889999999
Q ss_pred eEEEecCCCCCCCCCCCCCCccccccCCCCHHHHHHhh
Q 018122 276 LTYSSWDLSSSKDHERRGWHPATYKYADATPLLIQSIK 313 (360)
Q Consensus 276 LrYidW~~~~~~~~~~~~~hP~~l~~~D~~~~~~~~~~ 313 (360)
+|||+|+. ++++||++++..+++++.++.++
T Consensus 214 ~r~i~W~~-------~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 214 LRYIDWSR-------RGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp SEEE-BTG-------T-SS---SSEEEE--GGGHHHH-
T ss_pred EEEEECCC-------CCCCCCCeeeeeeeCHHHHHhhC
Confidence 99999993 37899999999999988777653
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=293.08 Aligned_cols=264 Identities=17% Similarity=0.179 Sum_probs=206.3
Q ss_pred CcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCCCCccc-------CCCCccceeeccccCCcceeecCCccHHH
Q 018122 55 PKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFS-------KGTTRSIYFLDRQVNDSIQVDWGGASMIE 126 (360)
Q Consensus 55 ~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~~~~-------~~~~~~~~F~~r~i~~r~~V~WGg~SlV~ 126 (360)
.-+||+.++|++.+ ++|++++.| +|++.++||+|.+++.. ......++++ ++++..|.|||+|+++
T Consensus 103 ~~~a~~~~v~kd~~~verll~aiY---hPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v---~~k~~~v~~~G~s~l~ 176 (439)
T KOG0799|consen 103 FPAAFLRVVYKDYEQVERLLQAIY---HPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIV---LPKRESVTYGGHSILA 176 (439)
T ss_pred cceEEEEeecccHHHHHHHHHHHh---CCcCcceEEECCCCCHHHHHHHHHHHhcCCceEE---eccccceecCCchhhH
Confidence 35677777799987 899999976 67888889999987532 1112233333 2579999999999999
Q ss_pred HHHHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCCccEeccCCCCC---CcccC-------------CcC
Q 018122 127 AERILLRHALAD-PFNDRFVFLSDSCIPLYNFSYTYNYIMS-TSTSFVDSFADTKE---GRYNP-------------KMA 188 (360)
Q Consensus 127 Atl~Ll~~AL~d-~~~d~FvlLSgsD~PL~s~~~I~~~L~~-~~~sFIe~~~~~~~---~Ry~~-------------~~~ 188 (360)
|++++|+.+++. .+|+||++|||+||||+|++|+.+.|+. +|.|||++....++ ++.++ .+.
T Consensus 177 a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~ 256 (439)
T KOG0799|consen 177 AHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPW 256 (439)
T ss_pred HHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCcc
Confidence 999999999984 5699999999999999999999999999 89999999876533 11111 111
Q ss_pred CCCC-cccccccCceeeecHHHHHHhHcCCcchhHHHHhhhccCCccccccCCCCCCCCCCCcccCCchHHHHHHhCCCC
Q 018122 189 PVIP-VHNWRKGSQWAVLTRKHAEIVVNDTTVFPMFQQHCKRKSLPEFWREHSFPADPSKEHNCIPDEHYVQTLLAQEGL 267 (360)
Q Consensus 189 p~ip-~~~~~~GSqW~~LtR~~ae~vl~d~~~~~~F~~~c~~~~~~~~w~~~~~p~~~~~~~~~~pDE~yfqTlL~ns~~ 267 (360)
+.+| .+++++||.|++|+|++|+|++.+... +.+.+++ ++++.|||+||+||++|+ +
T Consensus 257 ~~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~~-~~ll~~~--------------------~~t~~~dE~f~~Tl~~n~-~ 314 (439)
T KOG0799|consen 257 VILPTALKLFKGSAWVSLSRAFVEYLISGNLP-RTLLMYY--------------------NNTYSPDEGFFHTLQCNP-F 314 (439)
T ss_pred ccCCCceEEEecceeEEEeHHHHHHHhcCccH-HHHHHHH--------------------hCccCcchhhhHhhhccc-c
Confidence 2356 588999999999999999999998443 3333332 468999999999999999 7
Q ss_pred CCCcccCC--eEEEecCCCCCCCCCCCCCCccccccCCC------CH-HHHHHhh--hccCcccccchhhhhhhcccCc-
Q 018122 268 EGELTRRS--LTYSSWDLSSSKDHERRGWHPATYKYADA------TP-LLIQSIK--VCISLSLSLTDIKDNLLSHYCV- 335 (360)
Q Consensus 268 ~~~i~n~~--LrYidW~~~~~~~~~~~~~hP~~l~~~D~------~~-~~~~~~~--~~~~~~~~l~~i~~~ll~~~~~- 335 (360)
......++ +||+.|+... .+++++||+.++.+|+ +. .+++++. ..+. +++++|.+++++...
T Consensus 315 ~~~g~~~~~~lr~~~W~~~~---~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nk---vl~~~d~~~i~c~~~~ 388 (439)
T KOG0799|consen 315 GMPGVFNDECLRYTNWDRKD---VDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANK---VLDKFDPELIGCLAEF 388 (439)
T ss_pred CCCCcccchhhcceeccccc---ccccccCCcccccccceeeeecchhHHHhhCchhhccc---chhccCHHHHhhhhhc
Confidence 77778888 9999999521 2246789999999886 33 5788887 5444 899999999999886
Q ss_pred ccccceecc-----ccccccCc
Q 018122 336 AILCIWFLY-----ITLRVGNI 352 (360)
Q Consensus 336 ~~~~~~~~~-----~~~~~~~~ 352 (360)
.++||||-. .|+..|+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~ 410 (439)
T KOG0799|consen 389 NRTGGWCDHSLRTLPCSELGDA 410 (439)
T ss_pred cCcccccccccccccccccccc
Confidence 699999933 57777763
No 4
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=75.54 E-value=14 Score=33.66 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=61.8
Q ss_pred CCCCCCCcEEEEEEeCCCCC-HHHHHHHHhcCCCCc--eEEEEEeCCCCccc-----CCCCccceeeccccCCcceeecC
Q 018122 49 PRFVQKPKIAFLFIARNRLP-LEMVWDKFFKGEESR--FSIYVHSRPGFLFS-----KGTTRSIYFLDRQVNDSIQVDWG 120 (360)
Q Consensus 49 ~~~~~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~~--~~iyIHvD~~~~~~-----~~~~~~~~F~~r~i~~r~~V~WG 120 (360)
.+...+|+++.+|.++++.. ++++++.+.+...+. +.++|..|...+.. .....+..++ ... .
T Consensus 23 ~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i----~~~-----~ 93 (251)
T cd06439 23 PDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLL----RFP-----E 93 (251)
T ss_pred CCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEE----EcC-----C
Confidence 44567789999999999976 888888876543222 78888888754311 0000112122 011 1
Q ss_pred CccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 018122 121 GASMIEAERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYIMS 166 (360)
Q Consensus 121 g~SlV~Atl~Ll~~AL~d~~~d~FvlLSgsD~PL~s~~~I~~~L~~ 166 (360)
..+...|-..+++.| ..||++++-+.++|- .+.+.+.+..
T Consensus 94 ~~g~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 94 RRGKAAALNRALALA----TGEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred CCChHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHHH
Confidence 123455555555554 239999999999995 5655555543
No 5
>PRK11204 N-glycosyltransferase; Provisional
Probab=73.07 E-value=62 Score=32.39 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=33.2
Q ss_pred CCCCCcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCCC
Q 018122 51 FVQKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPG 93 (360)
Q Consensus 51 ~~~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~ 93 (360)
....|+++.+|-+|++.+ +.+.++.+.+...+.+.|+|=-|..
T Consensus 50 ~~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s 93 (420)
T PRK11204 50 LKEYPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGS 93 (420)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC
Confidence 345689999999999977 8888888876666677887755554
No 6
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=69.31 E-value=72 Score=31.72 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=57.2
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCCCCcc--c---C--CCCcc-ceeeccccCCcceeecCCc
Q 018122 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLF--S---K--GTTRS-IYFLDRQVNDSIQVDWGGA 122 (360)
Q Consensus 52 ~~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~~~--~---~--~~~~~-~~F~~r~i~~r~~V~WGg~ 122 (360)
+..|++..+|-+|++.+ +++.++.+.+.+.+.+.|.|=.|...+- + + ...++ .+ +.+....+..|.
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i---~~v~~~~~~G~~-- 112 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADI---DLVIDARRHGPN-- 112 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCce---EEEECCCCCCCC--
Confidence 34678999999999977 8888899887666678887744433211 0 0 00011 01 011111122232
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHH
Q 018122 123 SMIEAERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYI 164 (360)
Q Consensus 123 SlV~Atl~Ll~~AL~d~~~d~FvlLSgsD~PL~s~~~I~~~L 164 (360)
.-+.+..++++.| ..|+++++-+++.| +.+.+.+..
T Consensus 113 ~K~~~l~~~~~~a----~ge~i~~~DaD~~~--~p~~L~~lv 148 (373)
T TIGR03472 113 RKVSNLINMLPHA----RHDILVIADSDISV--GPDYLRQVV 148 (373)
T ss_pred hHHHHHHHHHHhc----cCCEEEEECCCCCc--ChhHHHHHH
Confidence 2344444444433 46888888777777 566665554
No 7
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=63.30 E-value=52 Score=33.63 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=53.6
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCCCCcccCCCCccceeeccccCCcceeec--CCccHHHHH
Q 018122 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFSKGTTRSIYFLDRQVNDSIQVDW--GGASMIEAE 128 (360)
Q Consensus 52 ~~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~~~~~~~~~~~~F~~r~i~~r~~V~W--Gg~SlV~At 128 (360)
+..|+++.+|-+|++.. +.+.++.+.+.+.+.+.|+|--|...+.....- .. +... .+++.+.. +.-+.-.
T Consensus 72 ~~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~-~~-~~~~--~~~v~vv~~~~n~Gka~-- 145 (444)
T PRK14583 72 KGHPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVL-DA-LLAE--DPRLRVIHLAHNQGKAI-- 145 (444)
T ss_pred CCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHH-HH-HHHh--CCCEEEEEeCCCCCHHH--
Confidence 34588999999999976 888888887666667888776665432100000 00 0000 00111111 1112222
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccC
Q 018122 129 RILLRHALADPFNDRFVFLSDSCIPL 154 (360)
Q Consensus 129 l~Ll~~AL~d~~~d~FvlLSgsD~PL 154 (360)
++..+++....|+++.+-+++.|=
T Consensus 146 --AlN~gl~~a~~d~iv~lDAD~~~~ 169 (444)
T PRK14583 146 --ALRMGAAAARSEYLVCIDGDALLD 169 (444)
T ss_pred --HHHHHHHhCCCCEEEEECCCCCcC
Confidence 234444445679999999999874
No 8
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=50.63 E-value=2.7e+02 Score=27.78 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=64.2
Q ss_pred CCCCCcEEEEEEeCCCCC-HHHHHHHHhcCCCC-ceEEEEEeCCCCcc-----cC---CCCc--cceeeccccCCcceee
Q 018122 51 FVQKPKIAFLFIARNRLP-LEMVWDKFFKGEES-RFSIYVHSRPGFLF-----SK---GTTR--SIYFLDRQVNDSIQVD 118 (360)
Q Consensus 51 ~~~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~-~~~iyIHvD~~~~~-----~~---~~~~--~~~F~~r~i~~r~~V~ 118 (360)
.+..|++..+|-++++.+ +.++++.+.+.+.+ .+.|.|=-|...+- .. .... ....+. .+..+..
T Consensus 36 ~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~---~~~~~~g 112 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVS---GQPLPPG 112 (384)
T ss_pred CCCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEec---CCCCCCC
Confidence 346789999999999977 89999998764433 46666555543321 00 0000 111110 0122334
Q ss_pred cCCccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHH---HHhcCCCccEe
Q 018122 119 WGGASMIEAERILLRHALA-DPFNDRFVFLSDSCIPLYNFSYTYN---YIMSTSTSFVD 173 (360)
Q Consensus 119 WGg~SlV~Atl~Ll~~AL~-d~~~d~FvlLSgsD~PL~s~~~I~~---~L~~~~~sFIe 173 (360)
|+| ...|.-.+++.|-+ .++.++++++-+++.+ +.+.+.+ .+..++...+.
T Consensus 113 ~~G--k~~A~n~g~~~A~~~~~~gd~llflDaD~~~--~p~~l~~lv~~~~~~~~~~vs 167 (384)
T TIGR03469 113 WSG--KLWAVSQGIAAARTLAPPADYLLLTDADIAH--GPDNLARLVARARAEGLDLVS 167 (384)
T ss_pred Ccc--hHHHHHHHHHHHhccCCCCCEEEEECCCCCC--ChhHHHHHHHHHHhCCCCEEE
Confidence 544 44566666777654 2346888888887776 3444444 44434444443
No 9
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=31.86 E-value=1.9e+02 Score=24.97 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=28.7
Q ss_pred CcEEEEEEeCCCC-C-HHHHHHHHhcCCCCceEEEEEeCCC
Q 018122 55 PKIAFLFIARNRL-P-LEMVWDKFFKGEESRFSIYVHSRPG 93 (360)
Q Consensus 55 ~KiAfLIlah~~~-~-l~rL~~~lf~~~~~~~~iyIHvD~~ 93 (360)
|++.++|.++++. + +++.++.+.....+.+.|.|--|..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs 41 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDAS 41 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCC
Confidence 5789999999987 7 8888888876544556776655543
No 10
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=28.48 E-value=88 Score=27.80 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCC
Q 018122 55 PKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRP 92 (360)
Q Consensus 55 ~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~ 92 (360)
|+|+.+|.++++.+ +.+.++.+.+.+.+.+.|+|=.|.
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~ 39 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDG 39 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECC
Confidence 57999999999977 888889887644456777764444
No 11
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=28.24 E-value=6.1e+02 Score=25.84 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=28.6
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhcCCCC--ceEEEEEeCC
Q 018122 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGEES--RFSIYVHSRP 92 (360)
Q Consensus 52 ~~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~--~~~iyIHvD~ 92 (360)
...|+++.+|-+|++.+ +.++++.+.+...+ ...|+|=-|.
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~ 89 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQ 89 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECC
Confidence 44689999999999987 88888887654333 2455554443
No 12
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.58 E-value=2.6e+02 Score=24.47 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=49.0
Q ss_pred EEEeCCCCC-HHHHHHHHhcCCCCc--eEEEEEeCCCCcccC------CCCccceeeccccCCcceeecCCccHHHHHHH
Q 018122 60 LFIARNRLP-LEMVWDKFFKGEESR--FSIYVHSRPGFLFSK------GTTRSIYFLDRQVNDSIQVDWGGASMIEAERI 130 (360)
Q Consensus 60 LIlah~~~~-l~rL~~~lf~~~~~~--~~iyIHvD~~~~~~~------~~~~~~~F~~r~i~~r~~V~WGg~SlV~Atl~ 130 (360)
+|.++++.. +++.++.+.+...+. +.|+|--|....... .......+ +.+. .... ++.....|-
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v--~~~~-~~~~--~~~g~~~a~-- 74 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQL--KILN-NSRV--SISGKKNAL-- 74 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcce--EEee-ccCc--ccchhHHHH--
Confidence 566788776 888888886654444 788877776432100 00000000 0011 0000 112223332
Q ss_pred HHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHh
Q 018122 131 LLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYIM 165 (360)
Q Consensus 131 Ll~~AL~d~~~d~FvlLSgsD~PL~s~~~I~~~L~ 165 (360)
..+++....++++++.+.|+| ..+.+...+.
T Consensus 75 --n~g~~~~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 75 --TTAIKAAKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred --HHHHHHhcCCEEEEECCCccc--CHHHHHHHHH
Confidence 233333346899999999977 4566666554
No 13
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=26.15 E-value=4.6e+02 Score=23.15 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=52.6
Q ss_pred cEEEEEEeCCCCC-HHHHHHHHhcCCC--CceEEEEEeCCCCcc-----cCC-CCccceeeccccCCcceeecCCccHHH
Q 018122 56 KIAFLFIARNRLP-LEMVWDKFFKGEE--SRFSIYVHSRPGFLF-----SKG-TTRSIYFLDRQVNDSIQVDWGGASMIE 126 (360)
Q Consensus 56 KiAfLIlah~~~~-l~rL~~~lf~~~~--~~~~iyIHvD~~~~~-----~~~-~~~~~~F~~r~i~~r~~V~WGg~SlV~ 126 (360)
+++.+|.++++.+ +.++++.+.+... ..+.|+|--|...+- ... .....+.+ +... . -+...
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~---i~~~---~---~~~~~ 71 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRL---IDNP---K---RIQSA 71 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEE---EeCC---C---CCchH
Confidence 4788899999877 8888888765333 456777665554321 000 00111111 1111 1 11223
Q ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHh
Q 018122 127 AERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYIM 165 (360)
Q Consensus 127 Atl~Ll~~AL~d~~~d~FvlLSgsD~PL~s~~~I~~~L~ 165 (360)
|--.+++.| ..++++++.+.|.| +.+.+...+.
T Consensus 72 a~N~g~~~a----~~d~v~~lD~D~~~--~~~~l~~~~~ 104 (249)
T cd02525 72 GLNIGIRNS----RGDIIIRVDAHAVY--PKDYILELVE 104 (249)
T ss_pred HHHHHHHHh----CCCEEEEECCCccC--CHHHHHHHHH
Confidence 433344443 57999999999986 5666666553
No 14
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=25.32 E-value=4.5e+02 Score=22.82 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCCCC
Q 018122 55 PKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGF 94 (360)
Q Consensus 55 ~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~ 94 (360)
|++..+|-++++.+ +.++++.+.+...+.+.|.|=.|...
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~ 41 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDED 41 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCc
Confidence 56889999998876 88888988765445677777555543
No 15
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=23.97 E-value=4e+02 Score=26.68 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=76.6
Q ss_pred EEEEEEeCCCCC-HHHHHHHHhcC--CCCceEEEEEeCCCCcc-c---CCCCccceeeccccCCcceeecC-------Cc
Q 018122 57 IAFLFIARNRLP-LEMVWDKFFKG--EESRFSIYVHSRPGFLF-S---KGTTRSIYFLDRQVNDSIQVDWG-------GA 122 (360)
Q Consensus 57 iAfLIlah~~~~-l~rL~~~lf~~--~~~~~~iyIHvD~~~~~-~---~~~~~~~~F~~r~i~~r~~V~WG-------g~ 122 (360)
++.+|++.+.++ +++.++++.+. ....+.|+|=.|..... . .......-.+. + .+.-....| ..
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~-~-~~~~~~~~~~~~~~~~y~ 79 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQ-H-PPISIKNVNPPHKFQGYY 79 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEE-c-ccccccccCcccccchhh
Confidence 467899999987 89999998764 23467899988875321 0 01100111110 0 011111111 12
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChH-HHHHHHhc--CCC--ccEeccCCCCCCcccCCcC-CCC-Cccc
Q 018122 123 SMIEAERILLRHALADPFNDRFVFLSDSCIPLYNFS-YTYNYIMS--TST--SFVDSFADTKEGRYNPKMA-PVI-PVHN 195 (360)
Q Consensus 123 SlV~Atl~Ll~~AL~d~~~d~FvlLSgsD~PL~s~~-~I~~~L~~--~~~--sFIe~~~~~~~~Ry~~~~~-p~i-p~~~ 195 (360)
.+.+.-..++..++.....+++|.|=+.|.|--++= ++.+.+.. ++. --|....+.| +...... |.. =...
T Consensus 80 ~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~NdnG--~~~~~~~~~~~lyrs~ 157 (334)
T cd02514 80 RIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWNDNG--KEHFVDDTPSLLYRTD 157 (334)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeeccCC--cccccCCCcceEEEec
Confidence 333333345556665446899999999999876643 22222222 222 1222222221 1110000 110 0234
Q ss_pred ccccCceeeecHHHHHH
Q 018122 196 WRKGSQWAVLTRKHAEI 212 (360)
Q Consensus 196 ~~~GSqW~~LtR~~ae~ 212 (360)
.+.|..|+.-.|.-.++
T Consensus 158 ff~glGWml~r~~W~e~ 174 (334)
T cd02514 158 FFPGLGWMLTRKLWKEL 174 (334)
T ss_pred CCCchHHHHHHHHHHHh
Confidence 56788888777777666
No 16
>PLN03153 hypothetical protein; Provisional
Probab=22.04 E-value=4.4e+02 Score=28.20 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=52.9
Q ss_pred ceeecCCccHHHHHHHHHHHHhc--CCCCCEEEEecCCCccCCChHHHHHHHhc-C--CCccEeccCCCCCCcccCCcCC
Q 018122 115 IQVDWGGASMIEAERILLRHALA--DPFNDRFVFLSDSCIPLYNFSYTYNYIMS-T--STSFVDSFADTKEGRYNPKMAP 189 (360)
Q Consensus 115 ~~V~WGg~SlV~Atl~Ll~~AL~--d~~~d~FvlLSgsD~PL~s~~~I~~~L~~-~--~~sFIe~~~~~~~~Ry~~~~~p 189 (360)
....+|..+.+.-.+. +.+++. .++.+||+++-++.|-+ .+.+.+.|+. + ..-||......... + .
T Consensus 184 y~~~~Gh~sa~rI~rm-v~et~~~~~pd~kWfVf~DDDTyf~--~~NLv~~Ls~YDptkp~YIGs~Se~~~q--n----~ 254 (537)
T PLN03153 184 YTNPTGHPSGLRISRI-VLESFRLGLPDVRWFVLGDDDTIFN--ADNLVAVLSKYDPSEMVYVGGPSESHSA--N----S 254 (537)
T ss_pred ccCCCCcHHHHHHHHH-HHHHHHhhCCCCCEEEEecCCcccc--HHHHHHHHhhcCCCCCEEeccccccccc--c----c
Confidence 3456777764433333 334443 57899999999999996 6899999977 2 33444433221100 0 0
Q ss_pred CCCcccc-cccCceeeecHHHHHHhHc
Q 018122 190 VIPVHNW-RKGSQWAVLTRKHAEIVVN 215 (360)
Q Consensus 190 ~ip~~~~-~~GSqW~~LtR~~ae~vl~ 215 (360)
.. ...+ ++|+. ++|+|..|+.+..
T Consensus 255 ~f-~~~fA~GGAG-~~LSrPLae~L~~ 279 (537)
T PLN03153 255 YF-SHNMAFGGGG-IAISYPLAEALSR 279 (537)
T ss_pred cc-ccccccCCce-EEEcHHHHHHHHH
Confidence 00 0112 45554 8899988887655
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=20.02 E-value=6e+02 Score=22.24 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=51.6
Q ss_pred CcEEEEEEeCCCC-C-HHHHHHHHhcCCCCc--eEEEEEeCCCCcc-----cC-CCCccceeeccccCCcceeecCCccH
Q 018122 55 PKIAFLFIARNRL-P-LEMVWDKFFKGEESR--FSIYVHSRPGFLF-----SK-GTTRSIYFLDRQVNDSIQVDWGGASM 124 (360)
Q Consensus 55 ~KiAfLIlah~~~-~-l~rL~~~lf~~~~~~--~~iyIHvD~~~~~-----~~-~~~~~~~F~~r~i~~r~~V~WGg~Sl 124 (360)
|++..+|-++++. . +++.++.+.....+. +.|+|=-|..... .. ........+ .....+|+..
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~------~~~~~~~~~~- 73 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYL------TRPDNRHAKA- 73 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEE------EeCCCCCCcH-
Confidence 5788999999874 4 788888886544344 6787744443211 00 000111111 1122344321
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHh
Q 018122 125 IEAERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYIM 165 (360)
Q Consensus 125 V~Atl~Ll~~AL~d~~~d~FvlLSgsD~PL~s~~~I~~~L~ 165 (360)
.+.-.+++. ...+|++++.+.|++ +.+.+...+.
T Consensus 74 -~~~n~~~~~----a~~d~i~~lD~D~~~--~~~~l~~l~~ 107 (234)
T cd06421 74 -GNLNNALAH----TTGDFVAILDADHVP--TPDFLRRTLG 107 (234)
T ss_pred -HHHHHHHHh----CCCCEEEEEccccCc--CccHHHHHHH
Confidence 122223333 257999999999988 3455555543
Done!