Query 018122
Match_columns 360
No_of_seqs 232 out of 775
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 9.4E-49 3.2E-53 391.0 7.8 264 44-333 73-385 (391)
2 1qg8_A Protein (spore coat pol 55.8 89 0.003 26.8 10.5 113 55-172 1-122 (255)
3 2fy7_A Beta-1,4-galactosyltran 47.6 51 0.0017 30.4 7.8 80 53-157 63-146 (287)
4 2z86_A Chondroitin synthase; G 28.0 3.5E+02 0.012 26.9 10.9 101 54-166 92-201 (625)
5 2z86_A Chondroitin synthase; G 21.0 6.1E+02 0.021 25.0 11.7 94 53-162 373-474 (625)
6 3bcv_A Putative glycosyltransf 19.6 2.5E+02 0.0086 23.5 6.9 88 53-154 3-98 (240)
7 4b2v_A S64; toxin, ICK; NMR {S 19.0 27 0.00093 21.3 0.3 12 337-348 15-26 (32)
8 3ckj_A Putative uncharacterize 18.4 5.3E+02 0.018 23.3 10.5 113 52-172 45-166 (329)
9 4fix_A UDP-galactofuranosyl tr 14.0 1.8E+02 0.0063 30.0 5.3 113 51-166 176-295 (657)
10 1jsd_A Haemagglutinin (HA1 cha 13.6 79 0.0027 30.1 2.0 39 139-177 74-119 (319)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=9.4e-49 Score=391.00 Aligned_cols=264 Identities=11% Similarity=0.109 Sum_probs=199.6
Q ss_pred cccCCCCCCCCCcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCCCCccc--CCC-Cccceeeccc-cCCcceee
Q 018122 44 IMSLRPRFVQKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFS--KGT-TRSIYFLDRQ-VNDSIQVD 118 (360)
Q Consensus 44 ~~~~~~~~~~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~~~~--~~~-~~~~~F~~r~-i~~r~~V~ 118 (360)
++.|.++.+.++||||||++|++++ +++|++++ +++++.||||+|++++.. ... .....|.|+. +++|+.|.
T Consensus 73 ~~~pl~~~e~~~kiAflil~h~d~~~l~rll~~l---y~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~ 149 (391)
T 2gak_A 73 IVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAI---YMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVV 149 (391)
T ss_dssp CCSCSCHHHHTSCEEEEEEECSCHHHHHHHHHHH---CCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCC
T ss_pred cCCCCCccccCCCEEEEEEecCCHHHHHHHHHHH---hCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccc
Confidence 6777777778899999999999987 88888886 467889999999997421 000 0111233322 24799999
Q ss_pred cCCccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhc-CCCccEeccCCCCC--Cccc--CC------
Q 018122 119 WGGASMIEAERILLRHALA-DPFNDRFVFLSDSCIPLYNFSYTYNYIMS-TSTSFVDSFADTKE--GRYN--PK------ 186 (360)
Q Consensus 119 WGg~SlV~Atl~Ll~~AL~-d~~~d~FvlLSgsD~PL~s~~~I~~~L~~-~~~sFIe~~~~~~~--~Ry~--~~------ 186 (360)
|||+|||+||++||+.||+ +++|+|||||||+||||+|+++|++||+. +++|||++..++++ .|+. ..
T Consensus 150 WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l 229 (391)
T 2gak_A 150 YASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKL 229 (391)
T ss_dssp TTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGGSHHHHEEEEEETTEE
T ss_pred cCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCcccccceEeeeeccccce
Confidence 9999999999999999998 45899999999999999999999999998 79999999977643 3322 11
Q ss_pred ----c-CCCCC-cccccccCceeeecHHHHHHhHcCCcchhHHHHhhhccCCccccccCCCCCCCCCCCcccCCchHHHH
Q 018122 187 ----M-APVIP-VHNWRKGSQWAVLTRKHAEIVVNDTTVFPMFQQHCKRKSLPEFWREHSFPADPSKEHNCIPDEHYVQT 260 (360)
Q Consensus 187 ----~-~p~ip-~~~~~~GSqW~~LtR~~ae~vl~d~~~~~~F~~~c~~~~~~~~w~~~~~p~~~~~~~~~~pDE~yfqT 260 (360)
+ .+.+| ..++++|||||+|||++|+||++|.. .+.|.+|| +++|+|||+||||
T Consensus 230 ~~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~--------------------k~t~~pDE~ffqT 288 (391)
T 2gak_A 230 TNTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWA--------------------QDTYSPDEFLWAT 288 (391)
T ss_dssp EEEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHH--------------------TTSSSGGGTHHHH
T ss_pred eeecccccCCccccceecccceeEecHHHHHHHHhCCc-HHHHHHHH--------------------cCCcCCchhHHHH
Confidence 1 12345 57899999999999999999999854 56677777 4689999999999
Q ss_pred HHhCCCCC----------CCcccCCeEEEecCCCCCCCCCCCCCCcc----------ccccCCCC------HHHHHHhhh
Q 018122 261 LLAQEGLE----------GELTRRSLTYSSWDLSSSKDHERRGWHPA----------TYKYADAT------PLLIQSIKV 314 (360)
Q Consensus 261 lL~ns~~~----------~~i~n~~LrYidW~~~~~~~~~~~~~hP~----------~l~~~D~~------~~~~~~~~~ 314 (360)
|+.++++. .++++++|||++|+.+... ..+++.||. +|+.+|+. ..|+|||..
T Consensus 289 ll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~-~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~ 367 (391)
T 2gak_A 289 IQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGD-VSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDM 367 (391)
T ss_dssp HTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSC-GGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCT
T ss_pred HhhccCCCCccccccccccccccCceEEEEecccCCc-cccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCC
Confidence 99887533 3345889999999842100 001334666 89888863 346778875
Q ss_pred ccCcccccchhhhhhhccc
Q 018122 315 CISLSLSLTDIKDNLLSHY 333 (360)
Q Consensus 315 ~~~~~~~l~~i~~~ll~~~ 333 (360)
..+ ..+|+.|++.|..|.
T Consensus 368 ~~d-~~~l~~l~~~l~~r~ 385 (391)
T 2gak_A 368 DVD-PFAIQCLDEHLRRKA 385 (391)
T ss_dssp TTC-HHHHHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHhhhh
Confidence 443 458999998887764
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=55.75 E-value=89 Score=26.81 Aligned_cols=113 Identities=8% Similarity=0.116 Sum_probs=61.8
Q ss_pred CcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCCCCcc-----cCC-CCccceeeccccCCcceeecCCccHHHH
Q 018122 55 PKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLF-----SKG-TTRSIYFLDRQVNDSIQVDWGGASMIEA 127 (360)
Q Consensus 55 ~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~~~-----~~~-~~~~~~F~~r~i~~r~~V~WGg~SlV~A 127 (360)
|+++.+|.+++... +.+.++.+.+...+.+.|.|--|...+. ... ......++.... ......+...+...|
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~-~~~~~~~~n~G~~~a 79 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDI-SGVKERTEKTRYAAL 79 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCC-CSHHHHHSSCHHHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEeccc-ccccccccccCHHHH
Confidence 68999999999877 8999999876555566776655554321 111 011111110000 000001124455566
Q ss_pred HHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC-CCccE
Q 018122 128 ERILLRHALADPFNDRFVFLSDSCIPLYN-FSYTYNYIMST-STSFV 172 (360)
Q Consensus 128 tl~Ll~~AL~d~~~d~FvlLSgsD~PL~s-~~~I~~~L~~~-~~sFI 172 (360)
--.+++.| .-+|+++|-+.|++-.. .+.+.+.+..+ +...+
T Consensus 80 ~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v 122 (255)
T 1qg8_A 80 INQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHc----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEE
Confidence 55566655 45899999999987433 23444555543 44443
No 3
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=47.64 E-value=51 Score=30.43 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=50.7
Q ss_pred CCCcEEEEEEeCCCCC-HHHHHHHHh---cCCCCceEEEEEeCCCCcccCCCCccceeeccccCCcceeecCCccHHHHH
Q 018122 53 QKPKIAFLFIARNRLP-LEMVWDKFF---KGEESRFSIYVHSRPGFLFSKGTTRSIYFLDRQVNDSIQVDWGGASMIEAE 128 (360)
Q Consensus 53 ~~~KiAfLIlah~~~~-l~rL~~~lf---~~~~~~~~iyIHvD~~~~~~~~~~~~~~F~~r~i~~r~~V~WGg~SlV~At 128 (360)
..++++.+|.+++... +.++++.+. +.....+.|+|--|. . + ++++...|-
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds-~--------d----------------~~f~~a~a~ 117 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQA-G--------D----------------TIFNRAKLL 117 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEC-S--------S----------------SCCCHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeC-C--------C----------------Cccchhhhh
Confidence 3579999999999876 788888775 223455666543331 0 0 112222232
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccCCCh
Q 018122 129 RILLRHALADPFNDRFVFLSDSCIPLYNF 157 (360)
Q Consensus 129 l~Ll~~AL~d~~~d~FvlLSgsD~PL~s~ 157 (360)
=.++..|++....++++++-+.|+|....
T Consensus 118 N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 118 NVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred hhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 33444555555679999999999998774
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=27.97 E-value=3.5e+02 Score=26.93 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=57.1
Q ss_pred CCcEEEEEEeCCCCC-HHHHHHHHhcCCC-CceEEEEEeCCCCcc-----cCCCC-ccceeeccccCCcceeecCCccHH
Q 018122 54 KPKIAFLFIARNRLP-LEMVWDKFFKGEE-SRFSIYVHSRPGFLF-----SKGTT-RSIYFLDRQVNDSIQVDWGGASMI 125 (360)
Q Consensus 54 ~~KiAfLIlah~~~~-l~rL~~~lf~~~~-~~~~iyIHvD~~~~~-----~~~~~-~~~~F~~r~i~~r~~V~WGg~SlV 125 (360)
.|++..+|.++++.+ +.+.++.+.+... ..+.|+|--|...+. ..... ....++ ...-.|.+..
T Consensus 92 ~p~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i--------~~~~~~~g~~ 163 (625)
T 2z86_A 92 IDGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYV--------RQKDYGYQLC 163 (625)
T ss_dssp CCCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEE--------EECCCSCCHH
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEE--------EeCCCCcchh
Confidence 378999999999876 8888898865422 356777665554321 11111 111111 0112234455
Q ss_pred HHHHHHHHHHhcCCCCCEEEEecCCCccCCCh-HHHHHHHhc
Q 018122 126 EAERILLRHALADPFNDRFVFLSDSCIPLYNF-SYTYNYIMS 166 (360)
Q Consensus 126 ~Atl~Ll~~AL~d~~~d~FvlLSgsD~PL~s~-~~I~~~L~~ 166 (360)
.|--.+++.| ..++++++-+.++|-... ..+...+..
T Consensus 164 ~a~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~~~~~~~ 201 (625)
T 2z86_A 164 AVRNLGLRAA----KYNYVAILDCDMAPNPLWVQSYMELLAV 201 (625)
T ss_dssp HHHHHHHHHC----CSSEEEEECTTEEECTTHHHHHHHHHHH
T ss_pred HHHHHHHHhC----CcCEEEEECCCCCCCHHHHHHHHHHHhc
Confidence 5655566655 458999998888883322 234444443
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=20.98 E-value=6.1e+02 Score=25.05 Aligned_cols=94 Identities=7% Similarity=-0.035 Sum_probs=55.8
Q ss_pred CCCcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCCCCcc-----cCC--CCccceeeccccCCcceeecCCccH
Q 018122 53 QKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLF-----SKG--TTRSIYFLDRQVNDSIQVDWGGASM 124 (360)
Q Consensus 53 ~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~~~-----~~~--~~~~~~F~~r~i~~r~~V~WGg~Sl 124 (360)
.+|+++.+|.+++... +.+.++.+.....+.+.|.|--|...+. ... ..+...++ . -...+.
T Consensus 373 ~~~~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~----~------~~n~G~ 442 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFI----S------QKNKGI 442 (625)
T ss_dssp SSCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEE----E------ECCCCH
T ss_pred cCCeEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEE----e------CCCCCH
Confidence 4579999999999877 8999999876555567777766554321 000 00111111 0 112234
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHH
Q 018122 125 IEAERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYN 162 (360)
Q Consensus 125 V~Atl~Ll~~AL~d~~~d~FvlLSgsD~PL~s~~~I~~ 162 (360)
..|--.+++.| .-+|+++|-+.|++ ..+.|..
T Consensus 443 ~~a~n~g~~~a----~g~~i~~ld~D~~~--~~~~l~~ 474 (625)
T 2z86_A 443 GSASNTAVRLC----RGFYIGQLDSDDFL--EPDAVEL 474 (625)
T ss_dssp HHHHHHHHHHC----CSSEEEECCTTCEE--CTTHHHH
T ss_pred HHHHHHHHHhc----CCCEEEEECCCccc--ChhHHHH
Confidence 55555555554 34889999888886 4444443
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=19.57 E-value=2.5e+02 Score=23.48 Aligned_cols=88 Identities=14% Similarity=0.002 Sum_probs=51.9
Q ss_pred CCCcEEEEEEeCCCCC-HHHHHHHHhcCCCCceEEEEEeCCCCccc-----CC--CCccceeeccccCCcceeecCCccH
Q 018122 53 QKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFS-----KG--TTRSIYFLDRQVNDSIQVDWGGASM 124 (360)
Q Consensus 53 ~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~~~~iyIHvD~~~~~~-----~~--~~~~~~F~~r~i~~r~~V~WGg~Sl 124 (360)
..|++..+|.+++..+ +++.++.+.+...+.+.|.|--|...+.. .. ..+...++ .. ...+.
T Consensus 3 ~~p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i----~~------~n~G~ 72 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVI----HK------KNAGL 72 (240)
T ss_dssp CCCSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEE----EC------CCCCH
T ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEE----EC------CCCCh
Confidence 3578999999999877 89999998765445667776555432210 00 00111111 11 12234
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCccC
Q 018122 125 IEAERILLRHALADPFNDRFVFLSDSCIPL 154 (360)
Q Consensus 125 V~Atl~Ll~~AL~d~~~d~FvlLSgsD~PL 154 (360)
..|--.+++.| .-+|+++|-+.|++-
T Consensus 73 ~~a~N~g~~~a----~g~~i~~lD~Dd~~~ 98 (240)
T 3bcv_A 73 GMACNSGLDVA----TGEYVAFCDSDDYVD 98 (240)
T ss_dssp HHHHHHHHHHC----CSSEEEECCTTCCCC
T ss_pred HHHHHHHHHHc----CCCEEEEECCCCcCC
Confidence 44544455554 348999998888864
No 7
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=19.01 E-value=27 Score=21.31 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=9.9
Q ss_pred cccceecccccc
Q 018122 337 ILCIWFLYITLR 348 (360)
Q Consensus 337 ~~~~~~~~~~~~ 348 (360)
.-|-||-|.|.|
T Consensus 15 kmgdwccgrcir 26 (32)
T 4b2v_A 15 KMGDWCCGRCIR 26 (32)
T ss_dssp TTCCCCSSEEET
T ss_pred HhcchhhhHHHH
Confidence 468899999876
No 8
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=18.42 E-value=5.3e+02 Score=23.30 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=59.8
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhcCCCC-ceEEEEEeCCCCcc--cCCCC-ccceee-ccccCCcceeecCCccHH
Q 018122 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGEES-RFSIYVHSRPGFLF--SKGTT-RSIYFL-DRQVNDSIQVDWGGASMI 125 (360)
Q Consensus 52 ~~~~KiAfLIlah~~~~-l~rL~~~lf~~~~~-~~~iyIHvD~~~~~--~~~~~-~~~~F~-~r~i~~r~~V~WGg~SlV 125 (360)
...|++..+|-++++.. +.+.++.+.+...+ .+.|.|=-|...+. +.... ...+.. .+.+. +.. ...+..
T Consensus 45 ~~~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~-~~~---~n~G~~ 120 (329)
T 3ckj_A 45 KAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALP-EVP---IRPGKG 120 (329)
T ss_dssp TTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCT-TSC---CCCSHH
T ss_pred ccCCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeec-cCC---CCCCHH
Confidence 45689999999999877 89999988654323 36777633332211 00000 000000 00000 011 122355
Q ss_pred HHHHHHHHHHhcCCCCCEEEEecCCCccCC--ChHHHHHHHhc-CCCccE
Q 018122 126 EAERILLRHALADPFNDRFVFLSDSCIPLY--NFSYTYNYIMS-TSTSFV 172 (360)
Q Consensus 126 ~Atl~Ll~~AL~d~~~d~FvlLSgsD~PL~--s~~~I~~~L~~-~~~sFI 172 (360)
.|.-.+++.| .-+|+++|-+.|.++. ....+.+.|.. .+...+
T Consensus 121 ~a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v 166 (329)
T 3ckj_A 121 EALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLV 166 (329)
T ss_dssp HHHHHHHHHC----CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEE
T ss_pred HHHHHHHHhC----CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEE
Confidence 5665666655 3488888888887332 23556666544 344444
No 9
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=14.04 E-value=1.8e+02 Score=29.98 Aligned_cols=113 Identities=8% Similarity=-0.072 Sum_probs=59.3
Q ss_pred CCCCCcEEEEEEeCCCCC-HHHHHHHHhcCCC---CceEEEEEeCCCCcc-cCCCCccceeeccccCCcceeec-CCccH
Q 018122 51 FVQKPKIAFLFIARNRLP-LEMVWDKFFKGEE---SRFSIYVHSRPGFLF-SKGTTRSIYFLDRQVNDSIQVDW-GGASM 124 (360)
Q Consensus 51 ~~~~~KiAfLIlah~~~~-l~rL~~~lf~~~~---~~~~iyIHvD~~~~~-~~~~~~~~~F~~r~i~~r~~V~W-Gg~Sl 124 (360)
.+..|+++.+|.+++..+ +.+.++.+.+... ..+.| |=+|-++.. .....-.... . ...+++.+.. +....
T Consensus 176 ~~~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EI-IVVDNgStD~s~~~~~~e~~-~-~~~~~I~vI~~~N~G~ 252 (657)
T 4fix_A 176 APGTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAV-IVPDQGERKVRDHPDFPAAA-A-RLGSRLSIHDQPNLGG 252 (657)
T ss_dssp CCSCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEE-EEEECSSSCGGGSTTHHHHH-H-HHGGGEEEEECCCCHH
T ss_pred CCCCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEE-EEEECcCCCccchHHHHHHH-H-hcCCCEEEEECCCCCH
Confidence 345689999999999877 8888888754211 22244 445544321 0000000000 0 0001111111 12334
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhc
Q 018122 125 IEAERILLRHALADPFNDRFVFLSDSCIPLYN-FSYTYNYIMS 166 (360)
Q Consensus 125 V~Atl~Ll~~AL~d~~~d~FvlLSgsD~PL~s-~~~I~~~L~~ 166 (360)
-.|--.+++.|....+.+|+++|-+.+++-.. .+.+.+++..
T Consensus 253 a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~ 295 (657)
T 4fix_A 253 SGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRF 295 (657)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHh
Confidence 45666778888875567999999888876522 2234444443
No 10
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=13.58 E-value=79 Score=30.09 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCCCEEEEe----cCCCcc--CCChHHHHHHHhc-CCCccEeccCC
Q 018122 139 PFNDRFVFL----SDSCIP--LYNFSYTYNYIMS-TSTSFVDSFAD 177 (360)
Q Consensus 139 ~~~d~FvlL----SgsD~P--L~s~~~I~~~L~~-~~~sFIe~~~~ 177 (360)
..|+|+|=- .|-||| +.+-++|.+.|++ ...++++.++.
T Consensus 74 ~~WsyiVEr~~~~ng~CYPG~~~d~eeLR~l~ss~~s~er~~~~p~ 119 (319)
T 1jsd_A 74 REWSYIVERPSAVNGMCYPGNVENLEELRSLFSSASSYQRIQIFPD 119 (319)
T ss_dssp EECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHSSEEEEEESSCG
T ss_pred CceEEEEeCCCCCCCcccCcccCCHHHHHHHHhccCccceEEecCC
Confidence 459999984 568999 6788999999988 67888888753
Done!