BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018123
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana
GN=OEP80 PE=1 SV=1
Length = 732
Score = 252 bits (644), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 194/326 (59%), Gaps = 15/326 (4%)
Query: 36 TSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWL------SQQ 89
TS PLS +IGS H NLFG ++KL+VS ++G DS + Y P W+ + +
Sbjct: 412 TSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDP---WIEGDDKRTSR 468
Query: 90 CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHV 149
++Q+S +P VHG DN S + + R++ G++ S P KW+ T L F+H
Sbjct: 469 SIMVQNSRTPGNLVHGNQPDNSS------LTIGRVTAGVEYSRPFRPKWNGTAGLIFQHA 522
Query: 150 RPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVL 209
++ I +D P+T SG HD ++ K ES Y + D+ + F+ +EQG+PVL
Sbjct: 523 GARDEQGNPIIKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVL 582
Query: 210 SKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVG 269
+WL FNR A KG+ +GPA L SL+GG +VG +P++AF IGG SVRGY EGAVG
Sbjct: 583 PEWLCFNRVTGRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVG 642
Query: 270 SGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
SGRS +V + EL+FP+ +EG +F D GTD+GSG VPG+PA + KPGSG G G G+R
Sbjct: 643 SGRSYVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGLGVR 702
Query: 330 YRSPFGSLQLDCAINAFQQKTLYFGI 355
SP G L+L+ A N +FG+
Sbjct: 703 VDSPLGPLRLEYAFNDQHAGRFHFGV 728
>sp|A2X208|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
indica GN=OEP80 PE=3 SV=1
Length = 665
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 191/326 (58%), Gaps = 14/326 (4%)
Query: 36 TSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWL------SQQ 89
T+ PLS +IGS H N+FG ++KL++S ++G DS + Y P W+ + +
Sbjct: 344 TNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDP---WIDGDNKRTSR 400
Query: 90 CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHV 149
++Q+S +P +HG G + + R++ G++ S P KWS T L F+H
Sbjct: 401 TIMVQNSRTPGTLIHG-----GDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGLIFQHA 455
Query: 150 RPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVL 209
+D I RD +T SG+ +D ++ K ES Y + DRS + F IEQG+P+L
Sbjct: 456 GARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGLPIL 515
Query: 210 SKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVG 269
+WL FNR +G ++GPA LL S +GG + G+ +P++AFAIGG SVRGY EGAVG
Sbjct: 516 PEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVG 575
Query: 270 SGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
SGRS V + E++ + LEG VF D G+DL SG VPG+PA +GKPGSG G G G+R
Sbjct: 576 SGRSYAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPGDPAGARGKPGSGYGYGVGIR 635
Query: 330 YRSPFGSLQLDCAINAFQQKTLYFGI 355
SP G L+L+ A N Q + +FG+
Sbjct: 636 VDSPLGPLRLEYAFNDKQARRFHFGV 661
>sp|Q6H7M7|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
japonica GN=OEP80 PE=3 SV=2
Length = 665
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 191/326 (58%), Gaps = 14/326 (4%)
Query: 36 TSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWL------SQQ 89
T+ PLS +IGS H N+FG ++KL++S ++G DS + Y P W+ + +
Sbjct: 344 TNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDP---WIDGDNKRTSR 400
Query: 90 CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHV 149
++Q+S +P +HG G + + R++ G++ S P KWS T L F+H
Sbjct: 401 TIMVQNSRTPGTLIHG-----GDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGLIFQHA 455
Query: 150 RPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVL 209
+D I RD +T SG+ +D ++ K ES Y + DRS + F IEQG+P+L
Sbjct: 456 GARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGLPIL 515
Query: 210 SKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVG 269
+WL FNR +G ++GPA LL S +GG + G+ +P++AFAIGG SVRGY EGAVG
Sbjct: 516 PEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVG 575
Query: 270 SGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
SGRS V + E++ + LEG VF D G+DL SG VPG+PA +GKPGSG G G G+R
Sbjct: 576 SGRSYAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPGDPAGARGKPGSGYGYGVGVR 635
Query: 330 YRSPFGSLQLDCAINAFQQKTLYFGI 355
SP G L+L+ A N Q + +FG+
Sbjct: 636 VDSPLGPLRLEYAFNDKQARRFHFGV 661
>sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1
Length = 809
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 112/245 (45%), Gaps = 34/245 (13%)
Query: 102 GVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITR 161
GV +NFSR S+ + GL + E I+ SN + V P +
Sbjct: 555 GVKANITENFSRQ-------SKFTYGLVMEEIITRDESNHICSNGQRVLP------NGAI 601
Query: 162 DLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSF------SRFSMQIEQGIPVLSKWLIF 215
DG P T SG+ D M L ++ + N R SR Q++QG+ V S + F
Sbjct: 602 SADGPPTTLSGTGIDRMAFL--QANITRDNTRFVNGTIVGSRNMFQVDQGLGVGSNFPFF 659
Query: 216 NRFKFVASKGVKL-----------GPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYG 264
NR + +K ++L P +L GG VGD+ Y AF +GG SVRGY
Sbjct: 660 NRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGG-CVGDLPSYDAFTLGGPYSVRGYN 718
Query: 265 EGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGL 324
G +G+ R+ L E+ P+ T A F + GTDLGS + V GNP + + G G+
Sbjct: 719 MGEIGAARNILELAAEIRIPIKGTHVYA-FAEHGTDLGSSKDVKGNPTVVYRRMGQGSSY 777
Query: 325 GYGLR 329
G G++
Sbjct: 778 GAGMK 782
>sp|Q84Q83|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica
GN=TOC75 PE=2 SV=2
Length = 817
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 107/236 (45%), Gaps = 31/236 (13%)
Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITR-----------DLDGFPVT 169
+ R+ +I+E + + T L E + D+ SI +DG P T
Sbjct: 559 VDRVGFKANITESFTRQSKFTYGLVVEEIT-TRDETNSICTHGSRAMPSGGLSMDGPPTT 617
Query: 170 CSGSNHDSMVVLKQESRYAKANDRSFS------RFSMQIEQGIPVLSKWLIFNRFKFVAS 223
SG+ D M L ++ + N + R Q++QG+ + SK FNR + +
Sbjct: 618 LSGTGIDRMAFL--QANITRDNTEFVNGAVIGDRCIFQLDQGLGIGSKNPFFNRHQLTLT 675
Query: 224 KGVKLG----------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRS 273
K V L PA L+ VGD+ Y AF +GG SVRGYG G +G+ R+
Sbjct: 676 KFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELGASRN 735
Query: 274 CLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
L +EL P+ NT F++ GTDLGS + V GNP + G G+ G G++
Sbjct: 736 VLEVASELRIPVRNTYVYG-FVEHGTDLGSSKDVKGNPTEFFRRVGHGSSYGLGVK 790
>sp|Q9STE8|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3
PE=1 SV=1
Length = 818
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 32/244 (13%)
Query: 102 GVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITR 161
GV +NF+R S+ + GL + E + S+ + + + P S
Sbjct: 564 GVKANITENFTRQ-------SKFTYGLVMEEITTRDESSHIAANGQRLLP------SGGI 610
Query: 162 DLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFS------RFSMQIEQGIPVLSKWLIF 215
DG P T SG+ D M L ++ + N + + R Q++QG+ + SK+ F
Sbjct: 611 SADGPPTTLSGTGVDRMAFL--QANITRDNTKFVNGAVVGQRTVFQVDQGLGIGSKFPFF 668
Query: 216 NRFKFVASKGVKLG----------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGE 265
NR + +K ++L P L+ G VGD+ Y AF +GG SVRGY
Sbjct: 669 NRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYNM 728
Query: 266 GAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLG 325
G +G+ R+ E+ P+ NT A F++ G DLGS + V GNP + G G+ G
Sbjct: 729 GELGAARNIAEVGAEIRIPVKNTHVYA-FVEHGNDLGSSKDVKGNPTAVYRRTGQGSSYG 787
Query: 326 YGLR 329
G++
Sbjct: 788 AGVK 791
>sp|Q5IZC8|TC754_ARATH Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4
PE=2 SV=1
Length = 396
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 156/348 (44%), Gaps = 54/348 (15%)
Query: 14 IDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSN 73
+D ++DF ++ + L P + S SL +GS+ I+ N+F + KLD K Y
Sbjct: 44 LDPSLDF-FEVTGNCNLGRPNSEGSNQSL-MGSVTIR--NIF--NPKLDDLLSKIEY-VR 96
Query: 74 VLVAYRRPRPEWLSQQCFVIQHSLSPEV----GVHGLPIDNFSRSGSGGVNLSRLSLGLD 129
L A ++PR + F LSP G L F + R L
Sbjct: 97 FLEAVKKPRNRTF-KTSFFNSRKLSPVFTGGPGYEDLVPPMF---------VGRDCLKAT 146
Query: 130 ISEPISSKWSNTTSLKFEHVRPVNDDWRSITRD-----------LDGFPVTCSGSNHDSM 178
I+E ++ + T + FE + D+ R I+ + ++G P T SG+ D +
Sbjct: 147 ITENLTRQRELTYGVMFEEI-ITRDENRRISENGLLLSPDGGISINGPPTTLSGTGIDHI 205
Query: 179 VVLKQESRYAKANDRSFS------RFSMQIEQGIPVLSKWLIFNRFK-----FVASKGVK 227
L ++ + N + + + Q++QG+ + + + +FNR + F+ K V+
Sbjct: 206 ATL--QANITRDNTKLVNGAVVGEKNIFQVDQGLGIGNNFPLFNRHQLSLTSFIQLKQVE 263
Query: 228 LG------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEL 281
G P +L GG I GD+ Y FA+GG SVRGY G +G+ ++ L E+
Sbjct: 264 EGSDKPQPPVLVLHGRYGGCI-GDLPSYDVFALGGPNSVRGYSMGELGAAKNILELGAEI 322
Query: 282 TFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
P+ NT A F + G DLGS + V GNP K G G+ G G++
Sbjct: 323 RIPVKNTHVYA-FAEHGNDLGSSKDVKGNPTGLYRKMGHGSSYGLGVK 369
>sp|P44038|TAMA_HAEIN Translocation and assembly module TamA OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tama PE=1
SV=1
Length = 578
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 20/109 (18%)
Query: 243 VGDMAPYQAFAIGGLGSVRGYG---------EGAVGSGRSCLVANTELTFPLNNTLEGAV 293
+ + P F GG SVRGYG G + G L + E + + A
Sbjct: 459 IEKIPPTLRFFAGGDRSVRGYGYKKIAPKNRNGKLVGGSRLLTTSLEYQYQVYPNWWAAT 518
Query: 294 FMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCA 342
F D G L N ++ + G+G G+ R+ SP G+++ D A
Sbjct: 519 FADSG-------LAADNYTAKELRYGTGVGV----RWASPVGAIKFDIA 556
>sp|Q729H8|BAMA_DESVH Outer membrane protein assembly factor BamA OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=bamA PE=3 SV=1
Length = 791
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 227 KLGPAFLLTSLTGGSIV-----GDMAPYQAFAIGGLGSVRGYGE-----------GAVGS 270
+L P +L T G V GD+ ++ F IGG+ S+RGY +G
Sbjct: 642 QLAPNHVLHGRTRGGAVLENGQGDVPVFERFYIGGIDSIRGYNSRDISPRDPESGDRIGG 701
Query: 271 GRSCLVANTELTFPLNNTLEGAV--FMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGL 328
R V N E + L A+ F D G + S + L++ +G +
Sbjct: 702 DRMAFV-NLEYIWVFKPDLGLALVPFFDMGINYDSSAEFNWDDELKK-------SVGLEM 753
Query: 329 RYRSPFGSLQL 339
R+RSP G L+
Sbjct: 754 RWRSPMGDLRF 764
>sp|P0ADE4|TAMA_ECOLI Translocation and assembly module TamA OS=Escherichia coli (strain
K12) GN=tamA PE=1 SV=1
Length = 577
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 20/107 (18%)
Query: 246 MAPYQAFAIGGLGSVRGY---------GEGAVGSGRSCLVANTELTFPLNNTLEGAVFMD 296
+ P F GG S+RGY G + + + E + + GAVF+D
Sbjct: 462 VPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVD 521
Query: 297 CGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAI 343
G + R + G G G+R+ SP G ++LD A+
Sbjct: 522 SGEAVSDIR-----------RSDFKTGTGVGVRWESPVGPIKLDFAV 557
>sp|P0ADE5|TAMA_ECO57 Translocation and assembly module TamA OS=Escherichia coli O157:H7
GN=tamA PE=3 SV=1
Length = 577
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 20/107 (18%)
Query: 246 MAPYQAFAIGGLGSVRGY---------GEGAVGSGRSCLVANTELTFPLNNTLEGAVFMD 296
+ P F GG S+RGY G + + + E + + GAVF+D
Sbjct: 462 VPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVD 521
Query: 297 CGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAI 343
G + R + G G G+R+ SP G ++LD A+
Sbjct: 522 SGEAVSDIR-----------RSDFKTGTGVGVRWESPVGPIKLDFAV 557
>sp|E1WAU4|TAMA_SALTS Translocation and assembly module TamA OS=Salmonella typhimurium
(strain SL1344) GN=tamA PE=3 SV=1
Length = 577
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 23/124 (18%)
Query: 232 FLLTSLTGGSIVGD---MAPYQAFAIGGLGSVRGY---------GEGAVGSGRSCLVANT 279
F++ + G GD + P F GG S+RGY +G + +
Sbjct: 445 FVMRANLGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSISPKDSDGNLKGASKLATGSL 504
Query: 280 ELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQL 339
E + + GAVF+D G + R + G G G+R+ SP G ++L
Sbjct: 505 EYQYNVTGKWWGAVFVDSGEAVSDIR-----------RSDFKTGTGVGVRWASPVGPVKL 553
Query: 340 DCAI 343
D A+
Sbjct: 554 DFAV 557
>sp|P06439|E118_ADET1 Early E1A 18 kDa protein OS=Tree shrew adenovirus serotype 1 PE=4
SV=1
Length = 162
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 236 SLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTE----LTFPLNNTLEG 291
S +G S + DMAP LG+ + E A CL+ E L F N +EG
Sbjct: 27 SFSGPSCLNDMAPDDI-----LGNCDLFAEAADALFPDCLLEEVEAASGLAFETNEEVEG 81
Query: 292 AVFMDC 297
VF DC
Sbjct: 82 FVFPDC 87
>sp|D2TN56|TAMA_CITRI Translocation and assembly module TamA OS=Citrobacter rodentium
(strain ICC168) GN=tamA PE=1 SV=1
Length = 577
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 20/106 (18%)
Query: 246 MAPYQAFAIGGLGSVRGY---------GEGAVGSGRSCLVANTELTFPLNNTLEGAVFMD 296
+ P F GG S+RGY G + + E + + GAVF+D
Sbjct: 462 VPPDLRFFAGGDRSIRGYKYKSISPKDSNGDLKGASKLATGSLEYQYNVTGKWWGAVFVD 521
Query: 297 CGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCA 342
G + +R+ +GAG+G +R++SP G ++LD A
Sbjct: 522 SGEAVSD---------IRRSDFKTGAGVG--VRWQSPVGPIKLDFA 556
>sp|C5B7R5|BAMA_EDWI9 Outer membrane protein assembly factor BamA OS=Edwardsiella
ictaluri (strain 93-146) GN=bamA PE=3 SV=1
Length = 795
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 49/131 (37%), Gaps = 34/131 (25%)
Query: 245 DMAPYQAFAIGGLGSVRGY------------------------GEGAVGSGRSCLVANTE 280
+M Y+ F GG GSVRG+ G AVG G + VA+ E
Sbjct: 644 EMPFYENFYAGGSGSVRGFQSNNIGPKAVYLNSDGSVDQNKTGGNDAVG-GNAMAVASLE 702
Query: 281 LTFP-------LNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGL--GYGLRYR 331
L P N+L +VFMD GT + P L + L G L++
Sbjct: 703 LITPTPFVSEQYANSLRTSVFMDAGTVWDTNWDQTTYPTLPDYSKATNVRLSAGIALQWM 762
Query: 332 SPFGSLQLDCA 342
SP G L A
Sbjct: 763 SPLGPLVFSYA 773
>sp|P14294|TOP3_ECOLI DNA topoisomerase 3 OS=Escherichia coli (strain K12) GN=topB PE=1
SV=1
Length = 653
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 35 NTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQ 94
+ S+PL + +L I+ FG S + + + LY+++ L+ Y R +L ++ F +
Sbjct: 285 SESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGR 344
Query: 95 HSLSPEVGVHG 105
H++ + VH
Sbjct: 345 HAVMNAISVHA 355
>sp|Q6ZSS3|ZN621_HUMAN Zinc finger protein 621 OS=Homo sapiens GN=ZNF621 PE=2 SV=1
Length = 439
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 15 DVNVDFTHKLCASL-----------MLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDV 63
DV V FT ASL ML N ++ SLV + P L E+ +
Sbjct: 15 DVAVYFTQNQWASLDPAQRALYGEVML---ENYANVASLV--AFPFPKPALISHLERGEA 69
Query: 64 SWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSR 123
W +D+ +L + W+ + VI+ S E +H +P+ R+ S + R
Sbjct: 70 PWGPDPWDTEILRGISQGGESWIKNEGLVIKQEASEETELHRMPVGGLLRNVSQHFDFKR 129
Query: 124 LSL 126
+L
Sbjct: 130 KAL 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,626,215
Number of Sequences: 539616
Number of extensions: 6551176
Number of successful extensions: 13368
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 13340
Number of HSP's gapped (non-prelim): 19
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)