Query 018123
Match_columns 360
No_of_seqs 191 out of 1393
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00992 3a0901s03IAP75 chlor 100.0 7E-43 1.5E-47 353.8 34.9 330 10-359 335-718 (718)
2 COG4775 Outer membrane protein 100.0 2.7E-42 5.8E-47 347.6 35.5 321 12-359 406-766 (766)
3 PRK11067 outer membrane protei 100.0 9.4E-41 2E-45 347.3 37.6 319 10-359 408-803 (803)
4 PLN03138 Protein TOC75; Provis 100.0 6.3E-40 1.4E-44 324.8 34.9 331 9-359 412-796 (796)
5 TIGR03303 OM_YaeT outer membra 100.0 7.9E-38 1.7E-42 323.5 38.4 315 10-359 382-741 (741)
6 COG0729 Outer membrane protein 100.0 2.4E-36 5.1E-41 296.5 22.5 303 12-359 264-594 (594)
7 PF01103 Bac_surface_Ag: Surfa 100.0 5.8E-33 1.3E-37 259.0 30.8 276 53-359 1-323 (323)
8 KOG2602 Predicted cell surface 99.9 2.2E-26 4.8E-31 210.9 10.2 315 6-359 99-457 (457)
9 COG2831 FhaC Hemolysin activat 99.8 9.4E-18 2E-22 165.5 28.7 311 10-358 207-553 (554)
10 PF03865 ShlB: Haemolysin secr 99.7 7.7E-14 1.7E-18 134.0 26.8 300 10-345 48-381 (404)
11 PF11854 DUF3374: Protein of u 73.7 1.2E+02 0.0025 31.4 23.0 76 271-346 469-549 (637)
12 PF12099 DUF3575: Protein of u 32.7 3.1E+02 0.0068 23.3 8.6 28 272-299 73-103 (189)
13 PF11854 DUF3374: Protein of u 30.2 6.4E+02 0.014 26.1 11.3 35 118-152 565-599 (637)
14 PF01389 OmpA_membrane: OmpA-l 28.2 3.2E+02 0.0069 23.0 7.5 70 273-344 77-151 (183)
15 PF10082 DUF2320: Uncharacteri 27.9 5.2E+02 0.011 24.3 14.4 20 130-149 303-322 (381)
16 PF13505 OMP_b-brl: Outer memb 25.8 3.2E+02 0.0069 21.5 7.1 82 275-358 86-175 (176)
17 PRK10808 outer membrane protei 23.8 5.1E+02 0.011 24.3 8.8 70 275-345 100-171 (351)
18 TIGR03303 OM_YaeT outer membra 20.8 7.2E+02 0.016 25.7 10.0 53 12-68 410-466 (741)
No 1
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=100.00 E-value=7e-43 Score=353.82 Aligned_cols=330 Identities=22% Similarity=0.268 Sum_probs=243.2
Q ss_pred CCCeEEEEEEEEEccce--------EEEeCCc---ccCCCCccceEEEEEEeeecccccCceEEEEEEec-----ceEEe
Q 018123 10 GKAKIDVNVDFTHKLCA--------SLMLPPP---RNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKG-----LYDSN 73 (360)
Q Consensus 10 ~~~~v~l~v~v~E~~~~--------~~~~g~g---y~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g-----~~~~~ 73 (360)
+++.++|.|+|+|++++ ++.+|+| |++ ..++.+.++|+++|++|.|++++++++.+ +..+.
T Consensus 335 ~~g~v~V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss---~~G~~g~i~~~~rNl~G~g~~l~~~~~~s~~~~~~~~~~ 411 (718)
T TIGR00992 335 NEGEIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLA---SSQPGGTITFEHRNLQGLNRSLGGSVTTSNFLNPQDDLL 411 (718)
T ss_pred CCCeEEEEEEEEECCCCceeeeccccccccCCCccccc---ccceeEEeeEEeccCcccCcEEEEEEEeccccCCCcceE
Confidence 56889999999999998 7788888 777 88999999999999999999999999998 77889
Q ss_pred EEEEeecCCCCCC--C-CceeEEEEeeeccccccCccccc-cccCCCCCceeeeEEEeEEEeeeecCcceeeEEE-----
Q 018123 74 VLVAYRRPRPEWL--S-QQCFVIQHSLSPEVGVHGLPIDN-FSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSL----- 144 (360)
Q Consensus 74 ~~~~y~~P~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 144 (360)
+.++|++||+... . ...+.+++...++.. ..+.. ........+...++.+++.+++++++.|..+.++
T Consensus 412 ~~lsy~~P~i~~~~~p~~~s~~~~~f~~~~~~---~~~~~~~~~~~~~~y~~~r~G~~~~~~r~l~~~~~~~~~~~~~~~ 488 (718)
T TIGR00992 412 FKVEYTHPYLDGVDNPRNRTYTASCFNSRKLS---PVFTGGPGVNEVPSIWVDRAGVKANITENFARQSKFTYGLVMEEI 488 (718)
T ss_pred EEEEEecCccCCCCCCccceEEEEEEEecccc---ccccCCcccccCCCceEEEEEEEEEEeeccCcccccccCeEEEEE
Confidence 9999999997432 1 224556654333211 00000 0001112345677788888888887665444333
Q ss_pred -EEEEEEEecCCCC-------------eee------eccCCCceEeeCCCCccceeeeeeeEE------e--ecCCc-ee
Q 018123 145 -KFEHVRPVNDDWR-------------SIT------RDLDGFPVTCSGSNHDSMVVLKQESRY------A--KANDR-SF 195 (360)
Q Consensus 145 -~~~~~~~~~~~g~-------------~~~------~~~~~~~~~~~~D~rD~~~~P~~g~~~------~--~~~d~-~f 195 (360)
.++..++.+..+. ... .....+.++++||+||++++|++|... + .+++. .|
T Consensus 489 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rDn~l~Pt~G~~~~~~~e~~~~~g~~~~~f 568 (718)
T TIGR00992 489 FTRDESRHINANGQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTNFVNGPTVGSRVRFQVDQGLGVGSGFPFF 568 (718)
T ss_pred eeeeeeeeccccCccccccccccccCCcceecCCCccceEEEEEEEEEecCCCCCCCCcccEEEEEEEeccCcCCCCceE
Confidence 3433322222111 100 112345678999999999999998533 2 25565 69
Q ss_pred eEEEEEEEEeEeCccCceEeEEEEEEEeeceecCceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEE
Q 018123 196 SRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCL 275 (360)
Q Consensus 196 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~ 275 (360)
.|+.+++++|+|+...... . .+-.+++|++++++|.+.+++|++++|++||.++||||.+++++||+.++
T Consensus 569 ~r~~~~~~~y~pl~~~~~~-------~---~~~~~~vla~r~~~G~~~gdlP~~e~F~lGG~~SVRGY~~~~lGpGr~~~ 638 (718)
T TIGR00992 569 NRHQLTYTKFIQLNWVELG-------A---GKSPPPVLVLHGHYGGCVGDLPSYDAFILGGPYSVRGYNMGELGAARNIF 638 (718)
T ss_pred EEEEEEEEEEEeccccccc-------c---ccCCCcEEEEEEEeeeEcCCCCchhceecCCCCcccCccCCcccccceee
Confidence 9999999999999643100 0 00123467888988887789999999999999999999999999999999
Q ss_pred EEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecCCCeeEEEEe
Q 018123 276 VANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGI 355 (360)
Q Consensus 276 ~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~~~~~~~f~i 355 (360)
.+++|||+|+.+.+ +++|+|+|++|+...++++.+.+..+++.+++|+|+|+||.||+||||||| -++..+|||+|
T Consensus 639 ~~s~E~r~Pi~~~~-g~~F~D~G~~~~s~~~~~g~~~~~~~~~~~~~s~GvGvR~~sPiGPiRlD~---~~~~~rf~F~i 714 (718)
T TIGR00992 639 EATAEIRIPIKATH-VYAFVEHGSDLGSSKDVKGNPTIVYRRPGQGSSYGAGVKLGLVRAEYAVDH---NEGTGAIFFRF 714 (718)
T ss_pred EEEEEEEEEecCcc-EEEEEecccccCcccccCCCccccccCCCCccceeEEEEEecCcccEEEEe---cCCCcEEEEec
Confidence 99999999999888 999999999998764433223333345666799999999999999999999 23568999999
Q ss_pred eecc
Q 018123 356 TNLA 359 (360)
Q Consensus 356 G~~~ 359 (360)
|++|
T Consensus 715 G~~F 718 (718)
T TIGR00992 715 GERF 718 (718)
T ss_pred cccC
Confidence 9976
No 2
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-42 Score=347.58 Aligned_cols=321 Identities=21% Similarity=0.306 Sum_probs=241.0
Q ss_pred CeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceEEeEEEEeecCCCCCCCCcee
Q 018123 12 AKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCF 91 (360)
Q Consensus 12 ~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~~~ 91 (360)
++|||+|+|+|++++++++|+||++ .+|+.+.++++++|++|.|+.++++++.|+..+.+.++|++|++. .+ .+
T Consensus 406 ~~vdvvv~VkE~~Tgsi~~G~Gy~s---~~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~~~~~~l~ft~P~f~--~~-~~ 479 (766)
T COG4775 406 DQVDVVVDVKERSTGSINFGLGYGS---DSGLSGFASLSERNFLGTGQSLSLNANLGDKQTSYSLSFTDPYFL--DD-RV 479 (766)
T ss_pred CeEEEEEEEEecCceeEEecccccC---CCceEEEEEEEEeecCccccEEEEEEEeccceEEEEEEEeccccc--CC-Cc
Confidence 3999999999999999999999999 999999999999999999999999999999999999999999873 22 24
Q ss_pred EEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEEEecCCC------Cee------
Q 018123 92 VIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDW------RSI------ 159 (360)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~------ 159 (360)
.+.....+... + .+. .......++..+.++++.+.+++++++++.+++.+++..+..... ...
T Consensus 480 slg~~~f~~~~--~--~~~-~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (766)
T COG4775 480 SLGFNLFSNRY--D--TFD-ADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYASLGVKLQG 554 (766)
T ss_pred eeEEEeEeeee--c--ccc-cccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCcccccccccccccc
Confidence 44443332210 0 000 011112456677888888888999888888888887765542111 000
Q ss_pred -eeccCCCceEeeCCCCccceeeeeeeE------Ee-ecCCceeeEEEEEEEEeEeCccCc-eEeEEEEEEEeeceecCc
Q 018123 160 -TRDLDGFPVTCSGSNHDSMVVLKQESR------YA-KANDRSFSRFSMQIEQGIPVLSKW-LIFNRFKFVASKGVKLGP 230 (360)
Q Consensus 160 -~~~~~~~~~~~~~D~rD~~~~P~~g~~------~~-~~~d~~f~~~~~~~~~~~pl~~~~-~~~~~~~~~~~~~~~~g~ 230 (360)
.....++.++++||+||++++||+|+. ++ +|+|..|+|++++.++|+|+.... ++. +.. .+
T Consensus 555 ~~~~~~~~s~~~tyD~rD~~~~Pt~G~~~~~~~e~~~~Ggd~~~~K~~~~~~~Y~~l~~~~~~l~--~~~------~~-- 624 (766)
T COG4775 555 GKSDLSSLSLGWTYDTRDNALFPTKGSYLSLTQEVAGLGGDIKYYKLELDGSKYYPLTDYIFTLS--LRG------EV-- 624 (766)
T ss_pred CcceeEEEEEeEEEcCCCCcCCCCCCeEEeeeeEEeccCCcceEEEEEEEEEEEEEcccccEEEE--EEE------EE--
Confidence 012346778999999999999999863 33 489999999999999999997764 221 111 11
Q ss_pred eeEEEeeecceecCCCCcccccccCCCCccccccCCcccc---------cceEEEEEEEEEEecCC----ceeEEEEEEe
Q 018123 231 AFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGS---------GRSCLVANTELTFPLNN----TLEGAVFMDC 297 (360)
Q Consensus 231 ~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~p---------G~~~~~~~~e~r~~~~~----~~~~~~F~D~ 297 (360)
......|. ..+|++|+|++||.++||||+.+.++| |+.++.+++|++||++. ++++++|+|+
T Consensus 625 ---g~~~~~g~--~~~p~~e~F~~GG~~svRGf~~~~igp~~~~~~~~GG~~~~~~S~El~fPl~~~~~~~~r~~lF~D~ 699 (766)
T COG4775 625 ---GYGKGYGT--KLLPIYERFYLGGSNSVRGFESGGLGPKDGYTDALGGTSYFVASAELRFPLPKVIGSGVRGALFFDA 699 (766)
T ss_pred ---EEeeccCC--cccccccceeeCCCccccceecCCcCCccccccccCceEEEEEEEEEEeecCCCCCcceEEEEEEEc
Confidence 11111222 148999999999999999999999998 99999999999999984 3789999999
Q ss_pred eecCCCCCCCCC-CCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecCC-----CeeEEEEeeecc
Q 018123 298 GTDLGSGRLVPG-NPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQ-----QKTLYFGITNLA 359 (360)
Q Consensus 298 G~~~~~~~~~~~-~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~~-----~~~~~f~iG~~~ 359 (360)
|.+|+...+ +. ...+......++.|+|+||+|.+|+|||++|||+|+.+ ..+|||+||..|
T Consensus 700 G~v~~~~~~-~~~~~~~~~~~~~~r~S~Gvgl~w~sP~gPlr~d~a~pi~~~~~D~~q~F~F~iG~~F 766 (766)
T COG4775 700 GSVWNTGTD-PSTVRNFYGSGSELRASAGVGLRWASPLGPLRFDYAFPIKKKEGDDTQRFQFGLGTRF 766 (766)
T ss_pred ccccccCcc-cccccCCcCcCcceeEEeeeeEEEecCCCcEEEEeecccccCCCCcceeEEEEccccC
Confidence 999986411 10 00111111124589999999999999999999999862 369999999875
No 3
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=100.00 E-value=9.4e-41 Score=347.33 Aligned_cols=319 Identities=19% Similarity=0.189 Sum_probs=235.6
Q ss_pred CCCeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceEEeEEEEeecCCCCCCCCc
Q 018123 10 GKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQ 89 (360)
Q Consensus 10 ~~~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~ 89 (360)
.++.|+|+|.|+|++++.+++|+||++ .+++.+.++++++|++|.|++++++++.+...+.+.++|++||+.. ...
T Consensus 408 ~~~~v~l~v~v~e~~~~~~~~g~gy~s---~~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~~~~~~l~~~~P~~~~-~~~ 483 (803)
T PRK11067 408 SPDQVDVVYKVKERNTGSFNFGVGYGT---ESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV-DGV 483 (803)
T ss_pred CCCeEEEEEEEEEccCCcEEEEeeecC---cCCEEEEEEEEecccCCcCcEEEEEEEeccceEEEEEEEeCCcCcC-CCc
Confidence 456899999999999999999999999 8899999999999999999999999999988889999999999732 111
Q ss_pred eeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEEEecCCC------------C
Q 018123 90 CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDW------------R 157 (360)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------~ 157 (360)
.+..++.+.... .. ......++..+..+++.+++++.+.+.+.+++.+++.++.+... .
T Consensus 484 ~~~~~~~~~~~~------~~---~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (803)
T PRK11067 484 SLGGRIFYNDFE------AD---DADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGE 554 (803)
T ss_pred eEEEEEEEEecc------cc---ccccccceeeEEEEEEEEEEEecCceEEEEEEEEEEEEeecCCcchhHHHHHHHcCC
Confidence 233333332211 00 00112334456677777788888888888888888765543111 0
Q ss_pred e------e--eeccCCCceEeeCCCCccceeeeeeeEE------e-ecCCceeeEEEEEEEEeEeCccCceEeEEEEEEE
Q 018123 158 S------I--TRDLDGFPVTCSGSNHDSMVVLKQESRY------A-KANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVA 222 (360)
Q Consensus 158 ~------~--~~~~~~~~~~~~~D~rD~~~~P~~g~~~------~-~~~d~~f~~~~~~~~~~~pl~~~~~~~~~~~~~~ 222 (360)
. . .....++.+++++|++|++++|++|... + ++++.+|.|+.+++++|+|+..+..+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~d~~D~~~~Pt~G~~~~~~~~~~~~gs~~~f~k~~~~~~~y~~l~~~~~~-------- 626 (803)
T PRK11067 555 NPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKW-------- 626 (803)
T ss_pred ccccccccccceEEEEEEEEEEEecCcCCCCCCCCeeEEEEEEEEeecccceEEEEEEEEEEEEEecCCCcE--------
Confidence 0 0 0012245678889999999999998632 2 37899999999999999999753211
Q ss_pred eeceecCceeEEEeeeccee----cCCCCcccccccCCCCccccccCCcccc----------------------------
Q 018123 223 SKGVKLGPAFLLTSLTGGSI----VGDMAPYQAFAIGGLGSVRGYGEGAVGS---------------------------- 270 (360)
Q Consensus 223 ~~~~~~g~~~l~~~~~~g~~----~~~~p~~~~f~lGG~~~vRGy~~~~~~p---------------------------- 270 (360)
++++++.+|.+ ..++|++++|++||.++||||+++++||
T Consensus 627 ---------~l~~r~~~G~~~~~~~~~lP~~erF~lGG~~svRGy~~~siGp~~~~~~~~~~~~~~~~~~~~~~~~~~iG 697 (803)
T PRK11067 627 ---------VLLGRGRLGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNYTQDGAKDLCKSDDAVG 697 (803)
T ss_pred ---------EEEEEEEeeeeecCCCCCCChhheeccCCCCcCCcccCCCcCCccccccccccccccccccccCCCCCCCC
Confidence 11233333322 1369999999999999999999876654
Q ss_pred cceEEEEEEEEEEecC-------CceeEEEEEEeeecCCCCCCCC------CCCccccCCCCCeeeEEEEEEEEcCceEE
Q 018123 271 GRSCLVANTELTFPLN-------NTLEGAVFMDCGTDLGSGRLVP------GNPALRQGKPGSGAGLGYGLRYRSPFGSL 337 (360)
Q Consensus 271 G~~~~~~~~e~r~~~~-------~~~~~~~F~D~G~~~~~~~~~~------~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl 337 (360)
|+.++++++|+++|++ ++|++++|+|+|+||+...+.. ..+++. +...+++|+|+|+||.||+|||
T Consensus 698 G~~~~~~s~E~~~p~~~~~~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~s~G~G~r~~sPiGPi 776 (803)
T PRK11067 698 GNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYS-DPSNIRMSAGIALQWMSPLGPL 776 (803)
T ss_pred CeEEEEEeEEEEEeCCccccccCCCEEEEEEEEeeecccCCcccccccccccccCcC-CCCcEEEEEeEEEEEeCCCCCe
Confidence 7899999999999963 4799999999999998631100 000100 1123459999999999999999
Q ss_pred EEEEEEecCC-----CeeEEEEeeecc
Q 018123 338 QLDCAINAFQ-----QKTLYFGITNLA 359 (360)
Q Consensus 338 ~~~~a~~~~~-----~~~~~f~iG~~~ 359 (360)
|||||+|+++ .++|||+||+.|
T Consensus 777 rld~a~pl~~~~~d~~~~~~fsiG~~f 803 (803)
T PRK11067 777 VFSYAQPFKKYDGDKAEQFQFNIGKTW 803 (803)
T ss_pred EEEEEEeCCCCCCCceeEEEEeccccC
Confidence 9999999973 489999999875
No 4
>PLN03138 Protein TOC75; Provisional
Probab=100.00 E-value=6.3e-40 Score=324.83 Aligned_cols=331 Identities=23% Similarity=0.319 Sum_probs=250.0
Q ss_pred CCCCeEEEEEEEEE--ccceEEEeCCcccC-CC-----CccceEEEEEEeeecccccCceEEEEEEe-----cceEEeEE
Q 018123 9 AGKAKIDVNVDFTH--KLCASLMLPPPRNT-SS-----PLSLVIGSLCIKHPNLFGGSEKLDVSWDK-----GLYDSNVL 75 (360)
Q Consensus 9 ~~~~~v~l~v~v~E--~~~~~~~~g~gy~~-~~-----~~~g~~~~~~~~~~N~~G~G~~l~~~~~~-----g~~~~~~~ 75 (360)
.++++|+|+|+|+| ++++.+.++.+++. ++ ...+..+.++|+++||+|+|+++.++++. ++....+.
T Consensus 412 ~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~Gtvs~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~ 491 (796)
T PLN03138 412 KNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGGTVSFEHRNIQGLNRSILGSVTSSNLLNPQDDLSFK 491 (796)
T ss_pred CCCCeEEEEEEEEEccCCceeEecccccccccCCCCccccccceeEEEEeccccccccceEEEEEEeecccCCccceEEE
Confidence 35789999999999 77778888777643 11 24567899999999999999999999998 45678999
Q ss_pred EEeecCCCCCCC---CceeEEEEeeecccc-cc-CccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEE
Q 018123 76 VAYRRPRPEWLS---QQCFVIQHSLSPEVG-VH-GLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVR 150 (360)
Q Consensus 76 ~~y~~P~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (360)
++|++||+.+.. .+.+.+++.-+++.. .+ +.+ ..+....+...++..++.++++++..+..++++.++...
T Consensus 492 lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~----~~~~~~~~~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~ 567 (796)
T PLN03138 492 LEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGP----GVDEVPPIWVDRAGFKANITENFTRQSKFTYGLVVEEIT 567 (796)
T ss_pred EEeecccccCCCCcccccEEEEEEecCcCCceeeCCC----CcccCCcceEeecccceEeecccCCCCceEEEEEEEEEE
Confidence 999999995421 124666654444321 00 111 000011223567778888888888776668899999887
Q ss_pred EecCCCCeee-----------------e--------ccCCCceEeeCCCCccceeeeeeeEEeecCCceeeEEEEEEEEe
Q 018123 151 PVNDDWRSIT-----------------R--------DLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQG 205 (360)
Q Consensus 151 ~~~~~g~~~~-----------------~--------~~~~~~~~~~~D~rD~~~~P~~g~~~~~~~d~~f~~~~~~~~~~ 205 (360)
..|..+.... . +...+.+.+++|++|++..|++|. ++.+.+++.
T Consensus 568 ~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~~~~~~~pt~G~-----------~~~~~~EQ~ 636 (796)
T PLN03138 568 TRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDNTKFVNGAVVGD-----------RHIFQVDQG 636 (796)
T ss_pred eecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEeccCCCCCCCCccc-----------eEEEEeeee
Confidence 7765553210 0 112344577899999999999863 234445555
Q ss_pred EeCccCceEeEEEEEEEeeceec----------CceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEE
Q 018123 206 IPVLSKWLIFNRFKFVASKGVKL----------GPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCL 275 (360)
Q Consensus 206 ~pl~~~~~~~~~~~~~~~~~~~~----------g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~ 275 (360)
+|++..+++++|+++.++.++++ .+++|++++++|++.+++|++|.|.|||.+|||||.+++++.|++++
T Consensus 637 lpvg~~~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~GdLPpYEAF~LGG~nSVRGY~eG~lg~gRs~l 716 (796)
T PLN03138 637 LGIGSKFPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNIL 716 (796)
T ss_pred ccccCCCCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEeccceecCCCcHHhcccCCCCcccCcccCcccccceeE
Confidence 66666666666666666555554 35789999999999999999999999999999999999999899999
Q ss_pred EEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecC-CCeeEEEE
Q 018123 276 VANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAF-QQKTLYFG 354 (360)
Q Consensus 276 ~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~-~~~~~~f~ 354 (360)
.+++|||+|| .++.+++|+|+|+.|....++++++....++++.-.|+|+|+| +||||+|||+..+ .+++|||+
T Consensus 717 ~asaEyRfPi-~~~~g~~F~D~GsdLgS~~~V~G~P~~~r~kpG~G~syG~Gvr----lGpiR~dYa~~~~~G~~r~hfg 791 (796)
T PLN03138 717 EVAAELRIPV-RNTHVYAFAEHGTDLGSSKDVKGNPTEFFRRAGHGSSYGVGVK----LGLVRAEYAVDHNAGTGAIFFR 791 (796)
T ss_pred EEEEEEEeee-ccceEEEEEEeccccCCCCCCCCCchhhccCCCCCcccceeeE----ecceeEEEeecCCCCCceEEEe
Confidence 9999999999 5678999999999999987777776655667887899999999 8999999999853 68999999
Q ss_pred eeecc
Q 018123 355 ITNLA 359 (360)
Q Consensus 355 iG~~~ 359 (360)
||..|
T Consensus 792 ~GerF 796 (796)
T PLN03138 792 FGERF 796 (796)
T ss_pred ccccC
Confidence 99875
No 5
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=7.9e-38 Score=323.46 Aligned_cols=315 Identities=21% Similarity=0.265 Sum_probs=239.8
Q ss_pred CCCeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceEEeEEEEeecCCCCCCCCc
Q 018123 10 GKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQ 89 (360)
Q Consensus 10 ~~~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~ 89 (360)
.++.++|+|+|+|++++.+.++++|++ ..++.+.++++++|++|.|+++++.++++...+.+.++|++|++.+. ..
T Consensus 382 ~~~~~~v~i~v~e~~~~~~~~~~g~~~---~~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~~~~~-~~ 457 (741)
T TIGR03303 382 SPDQVDLNVKVKEQPTGSISFGVGYGS---SSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDD-GV 457 (741)
T ss_pred CCCEEEEEEEEEEccccEEEEeeeecC---CCceEEEEEEEEecccccccEEEEEEEeccceEEEEEEEECCCCcCC-Ce
Confidence 467899999999999999999999998 88999999999999999999999999999888899999999997422 21
Q ss_pred eeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEEEecCCCCe-----------
Q 018123 90 CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRS----------- 158 (360)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------- 158 (360)
.+.+++.+...+ .... ....++..+..+.+.+++++.+++.+.+++.+++.++.+..+..
T Consensus 458 ~~~~~~~~~~~~------~~~~---~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (741)
T TIGR03303 458 SLGFSIFYSETD------RNYK---NFSDYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKNSSDSDSSASYFIKEQG 528 (741)
T ss_pred EEEEEEEEEEcc------cccc---cccCceeEEEEEEEEEEEEecCceEEEEEEEEEEEEEecCCCcchhHHHHHHHhC
Confidence 333443333221 0000 01123445566677777788888888888888876665321110
Q ss_pred eeeccCCCceEeeCCCCccceeeeeeeEE------e-ecCCceeeEEEEEEEEeEeCccC--ceEeEEEEEEEeeceecC
Q 018123 159 ITRDLDGFPVTCSGSNHDSMVVLKQESRY------A-KANDRSFSRFSMQIEQGIPVLSK--WLIFNRFKFVASKGVKLG 229 (360)
Q Consensus 159 ~~~~~~~~~~~~~~D~rD~~~~P~~g~~~------~-~~~d~~f~~~~~~~~~~~pl~~~--~~~~~~~~~~~~~~~~~g 229 (360)
......++.+++++|+||++++|++|... + .+++.+|.|+.+++++|+|+... +++
T Consensus 529 ~~~~~~~~~~~~~~d~rD~~~~P~~G~~~~~~~~~~~~g~~~~f~k~~~~~~~y~~l~~~~~~~l--------------- 593 (741)
T TIGR03303 529 GKFIDSSLSYGWSYDTLDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVL--------------- 593 (741)
T ss_pred CceEEEEEEEEEEEeCCcCCCCCCCCcEEEEEEEEeeecCCceEEEEEEEEEEEEEcCCCCcEEE---------------
Confidence 01123467788999999999999998532 2 36789999999999999999863 433
Q ss_pred ceeEEEeeecceec----CCCCcccccccCCCCccccccCCcccc-----------cceEEEEEEEEEEecC-----Cce
Q 018123 230 PAFLLTSLTGGSIV----GDMAPYQAFAIGGLGSVRGYGEGAVGS-----------GRSCLVANTELTFPLN-----NTL 289 (360)
Q Consensus 230 ~~~l~~~~~~g~~~----~~~p~~~~f~lGG~~~vRGy~~~~~~p-----------G~~~~~~~~e~r~~~~-----~~~ 289 (360)
++++.+|.+. .++|++++|++||..+||||++++++| |+.++.+++|||+|++ .++
T Consensus 594 ----~~~~~~g~~~~~~~~~~p~~e~f~lGG~~svRGy~~~~igp~~~~~~~~~~gG~~~~~~~~Elr~pl~~~~~~~~~ 669 (741)
T TIGR03303 594 ----SLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRDINDSGDSIGGNAMATANVELIFPLPFLPEDNGL 669 (741)
T ss_pred ----EEEEEeeEEEcCCCCccChhHeEecCCCCcCCCccCCCcCCCccCCCCCCCCceEEEEEEEEEEEcCCCCCccCcE
Confidence 3344454432 269999999999999999999998875 9999999999999995 359
Q ss_pred eEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecCC-----CeeEEEEeeecc
Q 018123 290 EGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQ-----QKTLYFGITNLA 359 (360)
Q Consensus 290 ~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~~-----~~~~~f~iG~~~ 359 (360)
++++|+|+|+||....+.. .. ......++.|+|+|+||.+|+|||++|||+|+.+ .++|||+||.+|
T Consensus 670 ~~~~F~D~G~v~~~~~~~~--~~-~~~~~~~~~s~G~Glr~~tp~gpi~ld~a~~l~~~~~d~~~~~~f~~G~~F 741 (741)
T TIGR03303 670 RGSVFFDAGNVWGTDQKKE--GD-YSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741 (741)
T ss_pred EEEEEEEeeecccCCcccc--cc-cCCCCcEEEEEEEEEEEECCcCcEEEEEEEeCCCCCCCceEEEEEeCcccC
Confidence 9999999999998742100 00 0011234499999999999999999999999962 589999999876
No 6
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-36 Score=296.53 Aligned_cols=303 Identities=20% Similarity=0.192 Sum_probs=226.3
Q ss_pred CeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceEEeEEEEeecCCCCCCCCcee
Q 018123 12 AKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCF 91 (360)
Q Consensus 12 ~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~~~ 91 (360)
..++|.|.|.|++...+.+|+||++ +.|..+.+.|.++|+|++||+++++.++++..+.+...|..|++.+.....+
T Consensus 264 ~~~pv~v~~~~rk~~~~~lG~gyst---~~G~~~~~~w~~~~~~~~~~~l~~~~~is~~~~~~~~~y~~p~~~~~~~~~~ 340 (594)
T COG0729 264 GLLPVKVSVSERKENTFELGVGYST---DVGAGLEAGWEKRNLFGRGHSLRIESEISAPLQTLEATYKAPLLFNPLGQYN 340 (594)
T ss_pred ceeceEEEecccccceEEeeeEEec---cccccceEEeeeecccCcceeEeeeeeeccchhcCceEEEeecccCCcccee
Confidence 3489999999999999999999999 9999999999999999999999999999988888999999999854322233
Q ss_pred EEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEE--EecCCCCeeeeccCCCceE
Q 018123 92 VIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVR--PVNDDWRSITRDLDGFPVT 169 (360)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~ 169 (360)
..+..+..++. ++.+ ... ....+.+...+.....|...+++++...+ ..+..+... +...++.++
T Consensus 341 ~~~~~~~~~~~--------~~t~-~~~---~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~g~~~~ 407 (594)
T COG0729 341 PVSAGFDRLDL--------YDTE-SDA---YTESLSASRGWDASLGWQRSLALRFSYDNFRQGDISGKTS-LLTPGVEFS 407 (594)
T ss_pred ccccccccchh--------hccc-ccc---ccceeeeeehhccccCceeEEEEEEEccccccccccCCce-EEecceEEE
Confidence 34433332211 1100 000 11223343334444566666777765543 333334332 456789999
Q ss_pred eeCCCCccceeeeeeeEEe---------ecCCceeeEEEEEEEEeEeCccCceEeEEEEEEEeeceecCceeEEEeeecc
Q 018123 170 CSGSNHDSMVVLKQESRYA---------KANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240 (360)
Q Consensus 170 ~~~D~rD~~~~P~~g~~~~---------~~~d~~f~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~g 240 (360)
+.+|+ |+..+|+.|.+.. .+++. +.+.......|+++.... +.++.|+++|
T Consensus 408 ~~~~~-dd~~~Pt~G~~~~~~~~~s~~~~~s~~-~~~~~~~~~~~~~~~~~~------------------~~~~~R~~~G 467 (594)
T COG0729 408 YTRDT-DDGLFPTWGDRLDLTIGPSYEALGSDV-DFRLVQARSGYLRTGGAD------------------HRLAGRGELG 467 (594)
T ss_pred EEEcc-CCCCCCCccceeeeeeeeccccccCch-HHhhhhccceeeecCccc------------------eEEEEecccc
Confidence 99999 9999999986432 14555 444444445555543322 1234566666
Q ss_pred eec----CCCCcccccccCCCCccccccCCcccc---------cceEEEEEEEEEEecCCceeEEEEEEeeecCCCCCCC
Q 018123 241 SIV----GDMAPYQAFAIGGLGSVRGYGEGAVGS---------GRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLV 307 (360)
Q Consensus 241 ~~~----~~~p~~~~f~lGG~~~vRGy~~~~~~p---------G~~~~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~ 307 (360)
.+. .++|++.||++||..+||||.+++|+| |..++..++|+||++.++|++++|+|+|.+|++...
T Consensus 468 ~il~~~~~~vPps~rFfaGG~~svRGY~y~sI~p~~~~g~~~Gg~~l~~~s~Ey~~~~t~~~~~a~FvD~G~a~n~~~~- 546 (594)
T COG0729 468 AILTGDLDDVPPSLRFFAGGDRSVRGYGYQSIGPQDANGDLLGGRSLVTGSLEYQYLVTDPWGLAVFVDAGSAGNNFTR- 546 (594)
T ss_pred eEeeCccccCCccceeecCCCcceeccccccccCcCCCCCcccceEEEEeeEEEEEeccCcEEEEEEEEccccccCCch-
Confidence 553 379999999999999999999999985 899999999999999999999999999999998642
Q ss_pred CCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecC----CCeeEEEEeeecc
Q 018123 308 PGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAF----QQKTLYFGITNLA 359 (360)
Q Consensus 308 ~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~----~~~~~~f~iG~~~ 359 (360)
...+++ .++|+||||.||+|||++|+|+|++ ++.+||++||+.+
T Consensus 547 -~~~d~k-------~G~Gigvr~~SPvGPIr~DiA~pl~~~~~~~~~~Yi~iG~~f 594 (594)
T COG0729 547 -LFSDLK-------KGAGIGVRWDSPVGPIRFDIAVPLEDKDDKKFQFYIGIGQEF 594 (594)
T ss_pred -hhhhhh-------ccceeeEeecCCcCCeEEEeeccccccCCCCeeEEEEecccC
Confidence 123466 9999999999999999999999998 6799999999875
No 7
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=100.00 E-value=5.8e-33 Score=259.04 Aligned_cols=276 Identities=23% Similarity=0.339 Sum_probs=199.6
Q ss_pred cccccCceEEEEEEecceEEeEEEEeecCCCCCCCCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEee
Q 018123 53 NLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISE 132 (360)
Q Consensus 53 N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (360)
|++|+|++++++++++...+.+.++|++|++.. . .+.+...+..+... .... ..++..+..+.+.+.+
T Consensus 1 N~~G~g~~~~~~~~~~~~~~~~~~~~~~P~~~~--~-~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~ 68 (323)
T PF01103_consen 1 NLFGTGQSLSVSATYGSDSQSLSLSYTNPYFFG--D-RLSLGFSLYYSSSD-SDEF--------SSYDEQTFGFSLSLGY 68 (323)
T ss_pred CCCCCCeEEEEEEEEcCceEEEEEEEEEcCCCC--C-CEEEEEEEEEEEcc-cccc--------ccceeeecccccccee
Confidence 899999999999999988899999999998732 1 24444433322100 0001 1123344555666666
Q ss_pred eecCcceeeEEEEEEEEEEecCCCCe------------eeeccCCCceEeeCCCCccceeeeeeeEEe---------ecC
Q 018123 133 PISSKWSNTTSLKFEHVRPVNDDWRS------------ITRDLDGFPVTCSGSNHDSMVVLKQESRYA---------KAN 191 (360)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~D~rD~~~~P~~g~~~~---------~~~ 191 (360)
++.+.+.+++++.+.+.++....... ......++.+++++|++|+.++|++|.... .++
T Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~~~~~ 148 (323)
T PF01103_consen 69 RISPNWSLSLGYSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPTKGWYLSFSLEFSGKFLGS 148 (323)
T ss_pred EcccceEEEEEEEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCccceEEEEEEEEecccCCC
Confidence 77788888899888876654332211 011345678899999999999999986432 267
Q ss_pred CceeeEEEEEEEEeEeCcc--CceEeEEEEEEEeeceecCceeEEEeeecceec-----CCCCcccccccCCCCcccccc
Q 018123 192 DRSFSRFSMQIEQGIPVLS--KWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIV-----GDMAPYQAFAIGGLGSVRGYG 264 (360)
Q Consensus 192 d~~f~~~~~~~~~~~pl~~--~~~~~~~~~~~~~~~~~~g~~~l~~~~~~g~~~-----~~~p~~~~f~lGG~~~vRGy~ 264 (360)
+.+|.|+++++++|+|+.+ ++++. +++.++.+. +++|..|+|++||..+||||.
T Consensus 149 ~~~f~k~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~lp~~~~f~lGG~~svRGy~ 209 (323)
T PF01103_consen 149 DSNFYKFELSARYYYPLGNNHKFVLA-------------------LRLQGGYIFGYSNSDNLPFSERFYLGGPNSVRGYR 209 (323)
T ss_pred cceEEEEEEEEEEEEECccCCceEEE-------------------EeeeeeEeeecccccccchhhhhccCCCCcccccc
Confidence 8899999999999999974 44432 233333321 249999999999999999999
Q ss_pred CCcccc---------cceEEEEEEEEEEecC-----CceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEE
Q 018123 265 EGAVGS---------GRSCLVANTELTFPLN-----NTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRY 330 (360)
Q Consensus 265 ~~~~~p---------G~~~~~~~~e~r~~~~-----~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~ 330 (360)
.++++| |+.++.+++|+|+|++ ..+++++|+|+|+||+..............++.++.|+|+||||
T Consensus 210 ~~~~~~~~~~~~~~gG~~~~~~~~E~r~~l~~~~~~~~~~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~ 289 (323)
T PF01103_consen 210 YRSIGPRDGDGDSLGGDYYFTASAEYRFPLPKIPGSPNLYLVAFADAGNVWNDNDNFPLNSDSFTSKDNIRSSVGVGLRY 289 (323)
T ss_pred CCccccccccCcccCceEEEEEeeeeEeeccccccCCcEEEEEEEccccccccCCCcCcccccccccccccceEEEEEEE
Confidence 999985 5999999999999994 46999999999999988653221110000012345999999999
Q ss_pred EcCceEEEEEEEEecCC-----CeeEEEEeeecc
Q 018123 331 RSPFGSLQLDCAINAFQ-----QKTLYFGITNLA 359 (360)
Q Consensus 331 ~tp~Gpl~~~~a~~~~~-----~~~~~f~iG~~~ 359 (360)
.+|+|||++|||+++++ ..+|||+||+.|
T Consensus 290 ~~~~g~lr~d~a~~l~~~~~~~~~~f~f~~g~~F 323 (323)
T PF01103_consen 290 DTPIGPLRFDYAYPLNKPPGDDRNRFYFSIGQTF 323 (323)
T ss_pred ecCcEEEEEEEEEEccCCCCCcceEEEEEEeCCC
Confidence 99999999999999852 349999999876
No 8
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=99.93 E-value=2.2e-26 Score=210.87 Aligned_cols=315 Identities=18% Similarity=0.208 Sum_probs=214.1
Q ss_pred ccCCCCCeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEec-ceEEeEEEEeecCCCC
Q 018123 6 SIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKG-LYDSNVLVAYRRPRPE 84 (360)
Q Consensus 6 ~~~~~~~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g-~~~~~~~~~y~~P~~~ 84 (360)
+-++.++..+|++.|.|.+. +....| |+.+.....+.+++..+|++|+|+.|+.++.++ .....+.+++..|.+.
T Consensus 99 g~~~~p~~~~Vt~~v~E~kr--~tg~~G--T~~gn~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~ 174 (457)
T KOG2602|consen 99 GSDALPGGLVVTFLVTEPKR--LTGSTG--TDVGNREGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFH 174 (457)
T ss_pred CCCCCCCceeEEEEeeecch--heeecc--ccccCCCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccC
Confidence 45667788899999999887 333333 321233346888999999999999999999999 5668899999999986
Q ss_pred CCCCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCc--ceeeEEEEEEEEE---------Eec
Q 018123 85 WLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSK--WSNTTSLKFEHVR---------PVN 153 (360)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~ 153 (360)
+.. +++.....+...+. .+++.++ .....+.+.+....-.. ..+.+..-|+... ++.
T Consensus 175 ~~~-~~~~~~~~~~~~d~---~~~ss~d--------~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~ 242 (457)
T KOG2602|consen 175 GLK-TPFSSFSIFRTQDW---MKWSSLD--------ETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRR 242 (457)
T ss_pred CCC-cchhhhhhhhhhcc---ccccccc--------ccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHH
Confidence 543 22332222221211 1222221 12223333332221100 0111111121111 122
Q ss_pred CCCCeeeeccCCCceEeeCCCCccceeeeeee------EEe-ecCCceeeEEEEEEEEeEeCccCceEeEEEEEEEeece
Q 018123 154 DDWRSITRDLDGFPVTCSGSNHDSMVVLKQES------RYA-KANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGV 226 (360)
Q Consensus 154 ~~g~~~~~~~~~~~~~~~~D~rD~~~~P~~g~------~~~-~~~d~~f~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ 226 (360)
+.|.. ...++.+++.+|+||..+.||+|. |++ ..++..|.|.+++.+...|+....++
T Consensus 243 qaG~~---L~s~L~~tfv~D~Rd~~~~ptrG~~~k~~~e~~g~~~~~sf~k~e~~lq~avpl~~~~~~------------ 307 (457)
T KOG2602|consen 243 QAGHS---LKSSLSYTFVFDKRDSSIIPTRGILLKSTSELAGLFGDVSFLKSELDLQKAVPLGFDATL------------ 307 (457)
T ss_pred HhhHH---HHHhhcceEEEeccCCcccccccceeEeehhhcCcccchhhhhhhhhheeccccccceee------------
Confidence 23322 246788999999999999999985 344 36789999999999999998765332
Q ss_pred ecCceeEEEeeecceec--C--CCCcccccccCCCCccccccCCcccc--------cceEEEEEEEEEEecCC------c
Q 018123 227 KLGPAFLLTSLTGGSIV--G--DMAPYQAFAIGGLGSVRGYGEGAVGS--------GRSCLVANTELTFPLNN------T 288 (360)
Q Consensus 227 ~~g~~~l~~~~~~g~~~--~--~~p~~~~f~lGG~~~vRGy~~~~~~p--------G~~~~~~~~e~r~~~~~------~ 288 (360)
.+++.+|.+. + .+++.|||++||+.+||||....||| |+.++.+.+.+-+|++. .
T Consensus 308 -------s~~~~~G~l~~~~~~~v~I~dRFylGGps~lRGFk~~giGP~~~~~~lGG~a~~a~~~~L~~~lP~~~~~~~~ 380 (457)
T KOG2602|consen 308 -------SFSFSGGVLKPLGSRPVSIADRFYLGGPSDLRGFKTRGIGPKDEGDFLGGDAFVAAGAHLYFPLPFAKGFKSG 380 (457)
T ss_pred -------EeeEeeeeeecCCCCccchhhhhccCCcccccccccCCcCCCCCCcccCCceeeEeeeEecccCCcccccccc
Confidence 2344555443 2 57788999999999999999999986 99999999999998873 5
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcC-ceEEEEEEEEecCC------CeeEEEEeeecc
Q 018123 289 LEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSP-FGSLQLDCAINAFQ------QKTLYFGITNLA 359 (360)
Q Consensus 289 ~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp-~Gpl~~~~a~~~~~------~~~~~f~iG~~~ 359 (360)
+++++|+.+|++.+...+.+. .......+..+.|+|+|+.+.+| +..+++.|..|+.. ..+|+|++|..|
T Consensus 381 fr~h~F~naG~l~~l~s~~~~-~~~~kl~e~~r~S~G~Glv~~~~~~aR~ELNy~~pl~~~e~D~~~~GfqfG~g~~F 457 (457)
T KOG2602|consen 381 FRGHVFANAGNLANLSSEAPK-NTIPKLLETFRTSVGAGLVVPTPRAARLELNYCLPLKKQENDRIRKGFQFGAGIDF 457 (457)
T ss_pred eeeEEEeccccccccCccccc-chhhhhhhhhccccccceEEecchhhceeeeeEEEeeeeccchhhcceEecccccC
Confidence 899999999999887642221 11222234456999999999999 89999999999852 478999998764
No 9
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=99.82 E-value=9.4e-18 Score=165.50 Aligned_cols=311 Identities=20% Similarity=0.218 Sum_probs=196.5
Q ss_pred CCCeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceE---EeEEEEeecCCCCCC
Q 018123 10 GKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYD---SNVLVAYRRPRPEWL 86 (360)
Q Consensus 10 ~~~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~---~~~~~~y~~P~~~~~ 86 (360)
+++.-+|+|++++++..++.+++.-.........++.+++...|++|.|+++++++..+... .++.++|+.|+-.+
T Consensus 207 ~~G~S~l~i~~~~~~~~~~~~~~DN~G~~~tG~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~~- 285 (554)
T COG2831 207 EPGESDLVIKVQQGKPWRVSASADNYGSKSTGRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGYW- 285 (554)
T ss_pred CCCccEEEEEeeeCCCeEEEEEecCCCCcCccceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEccc-
Confidence 55778999999997777777766333323355688999999999999999999999885332 48999999998632
Q ss_pred CCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecC--cceeeEEEEEEEEEEecC---CC-Ceee
Q 018123 87 SQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISS--KWSNTTSLKFEHVRPVND---DW-RSIT 160 (360)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~g-~~~~ 160 (360)
.+.+..++......-..+...+ ++..++...++.+++++.+ ...+++++.+.+.+..+. .. ....
T Consensus 286 ---~~~~~~s~~~y~~~~~~~~~~~------~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~~q~ 356 (554)
T COG2831 286 ---TFSLGASYSEYRQVLEGPFDVL------DYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIEVQR 356 (554)
T ss_pred ---eeEEEeeeeeeEeecccCCceE------EEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhccccccccc
Confidence 1334433332110000111111 1112234444555555433 334455555554332111 11 0001
Q ss_pred eccCCCceEee------CCCCccceeeeeeeE-----Ee----ec-CCceeeEEEEEEEEeEeCcc-CceEeEEEEEEEe
Q 018123 161 RDLDGFPVTCS------GSNHDSMVVLKQESR-----YA----KA-NDRSFSRFSMQIEQGIPVLS-KWLIFNRFKFVAS 223 (360)
Q Consensus 161 ~~~~~~~~~~~------~D~rD~~~~P~~g~~-----~~----~~-~d~~f~~~~~~~~~~~pl~~-~~~~~~~~~~~~~ 223 (360)
+....+.+.++ ..+.|.-+.-.+|.. .. .+ .+..|.++.+++++.+|+.. .+.+
T Consensus 357 r~~~~~~~gl~~~~~~~~~~~~~~l~~~~G~~~lGa~~~~~~~~~~~~~~f~~~~~~~~~~~~f~~~~~~~--------- 427 (554)
T COG2831 357 RRLTAVELGLSGRRYLGGGTLDASLGYRRGLGALGASKDDEETNGEPTSRFKKLNGNASLLQPFGLGPFLY--------- 427 (554)
T ss_pred cccccEEecceEEEEeccceecccchhhhCchhhcCCCCchhhcCCCCcceEEEEEeeEEEeecccccEEE---------
Confidence 11111222111 122222222222221 10 01 35789999999999999976 4432
Q ss_pred eceecCceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEEEEEEEEEEecCCc--eeEEEEEEeeecC
Q 018123 224 KGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNT--LEGAVFMDCGTDL 301 (360)
Q Consensus 224 ~~~~~g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~~~~~e~r~~~~~~--~~~~~F~D~G~~~ 301 (360)
..++.+......+++.|+|.+||..+||||+.+.+. ||..+.++.|+++++... +...+|+|+|.||
T Consensus 428 ----------~~~~~~Q~s~~~L~s~e~fsiGg~~sVRGf~~~~ls-gD~G~~~snel~~~~~~~~~~~~y~f~D~G~v~ 496 (554)
T COG2831 428 ----------ATQFNAQYSGDPLLSSEKFSIGGRYSVRGFDGGSLS-GDRGWYLSNELRWPLPPGGALQPYVFVDYGKVY 496 (554)
T ss_pred ----------EEEEEEEEcCCCCCcHHHeecCCCceecccCCCCcc-ccceEEEEEEEEeeccCCCceeEEEEEEeEEEe
Confidence 123333333457999999999999999999999999 999999999999999987 9999999999999
Q ss_pred CCCCCCCCCCccccCCCCCeeeEEEEEEEEcCc-eEEEEEEEEecCC-------CeeEEEEeeec
Q 018123 302 GSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPF-GSLQLDCAINAFQ-------QKTLYFGITNL 358 (360)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~-Gpl~~~~a~~~~~-------~~~~~f~iG~~ 358 (360)
....... ....+.|+|+|+||.-.. .-.++++|+|+.+ ...++|++...
T Consensus 497 ~~~~~~~--------~~~~l~g~~~Glr~~~~~~f~~~l~~g~pl~~p~~~~~~~~~~~~~~~~~ 553 (554)
T COG2831 497 NNSAEYL--------SGETLAGAGLGLRGNLKDGFSYDLDLGRPLSKPAGFDNRRTVVGFSFSYS 553 (554)
T ss_pred ccccccC--------CCCeeEEEEEeEEeeecCcceeEEEecccccCccccCCCCceeEEEEEEE
Confidence 8832111 122348999999999877 7889999999862 46777777643
No 10
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=99.66 E-value=7.7e-14 Score=133.97 Aligned_cols=300 Identities=22% Similarity=0.241 Sum_probs=134.3
Q ss_pred CCCeEEEEEEEEEccceEEEeCC-cccCCCCccceEEEEEEeeecccccCceEEEEEEecc------eEEeEEEEeecCC
Q 018123 10 GKAKIDVNVDFTHKLCASLMLPP-PRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGL------YDSNVLVAYRRPR 82 (360)
Q Consensus 10 ~~~~v~l~v~v~E~~~~~~~~g~-gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~------~~~~~~~~y~~P~ 82 (360)
+++.-+|+|++++.+..++.+++ .+++ .......+.+.+...|++|.++.+++++.... ..+.+.+.|..|+
T Consensus 48 ~~G~S~i~i~~~~~~~~~~~~~~DN~Gs-~~TG~~q~~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~ 126 (404)
T PF03865_consen 48 EPGTSDIVIENQPSKPWSGSLSLDNSGS-KSTGRYQGGATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPY 126 (404)
T ss_dssp STTEEEEEEEEEE-SS-EEEEEEEE-SS-S-SS-EEEEEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEE
T ss_pred CCCEEEEEEEecccCCEEEEEEEecCCc-cccceEEEEEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeee
Confidence 34778899999887666655543 1111 22456789999999999999999999986642 2456789999998
Q ss_pred CCCCCCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEEEec---CCC-Ce
Q 018123 83 PEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVN---DDW-RS 158 (360)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-~~ 158 (360)
-.| .+.+..+++............++ ...++..+.+.+.+....+....+++.+.+++.+..+ +.. ..
T Consensus 127 G~~----~ls~~~s~s~y~~~~~~~~~~~~----~~G~s~~~~~~~~~~l~R~~~~k~~l~~~l~~k~~~n~i~d~~i~v 198 (404)
T PF03865_consen 127 GYW----TLSLFASYSDYRYHQGLSYSTYD----LSGDSRSLGLRLSYVLYRSQNSKTSLSAGLSHKKSKNYINDIEIEV 198 (404)
T ss_dssp TTE----EEEEEEEEEEEE---SSSS---------EEEEEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEEE--TTS---
T ss_pred ece----EEEEEEEEeEEEEeeccccceEE----eeeeEEEEEEEeeEEEEECCCceEEEEEEEEEEEcccccccceeee
Confidence 632 13333333221100000011110 0113344555554443334343344444444433222 111 11
Q ss_pred eeeccCCCceEeeCCC-Cccceee-eeeeEEee---------------cCCceeeEEEEEEEEeEeCcc-CceEeEEEEE
Q 018123 159 ITRDLDGFPVTCSGSN-HDSMVVL-KQESRYAK---------------ANDRSFSRFSMQIEQGIPVLS-KWLIFNRFKF 220 (360)
Q Consensus 159 ~~~~~~~~~~~~~~D~-rD~~~~P-~~g~~~~~---------------~~d~~f~~~~~~~~~~~pl~~-~~~~~~~~~~ 220 (360)
...+...+.+.+++.. ...-.+- .-+++.+. +.+.+|.|..+.+..+.|+.- ...+ .
T Consensus 199 ~~~~lt~~~lgl~~~~~~~~g~~~~~l~~~~G~~~~ga~~~~~~~~~~~~~~~f~k~~l~~~~~~~~~~~~~~~----~- 273 (404)
T PF03865_consen 199 QSRRLTSLELGLNHSRYLGGGVLSANLSYSQGLPWFGAERDPEDADGNGPDSQFTKWSLNASLYQPFQLGNQPF----S- 273 (404)
T ss_dssp EEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEE-------------------EEEEEE---EEEEEEEEETTEEE----E-
T ss_pred ccceeeEEEeccceEEEecCcEEEEeEEEEeccCccCCcCCchhccCCCcccceEEEEeehhhccceeecCccE----E-
Confidence 1223334444444321 1111100 00111110 124567777776666655421 1111 1
Q ss_pred EEeeceecCceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEEEEEEEEEEecCC---ceeEEEEEEe
Q 018123 221 VASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNN---TLEGAVFMDC 297 (360)
Q Consensus 221 ~~~~~~~~g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~~~~~e~r~~~~~---~~~~~~F~D~ 297 (360)
+..++.+.....+++..|+|.+||..+||||+.+++. |+..+.++.|+.+++.- .+...+|+|+
T Consensus 274 ------------~~~~~~gQys~d~L~ssEq~siGG~~sVRGF~~~~ls-Gd~G~~~rNeLs~~~~~~~~~l~py~g~D~ 340 (404)
T PF03865_consen 274 ------------YNSSLSGQYSNDNLYSSEQFSIGGRYSVRGFDESSLS-GDSGWYLRNELSWPFPLGNFSLTPYLGLDY 340 (404)
T ss_dssp ------------EEEEEEEEE-SS-SSSSEE--S------TT----S---SS-SS--EESEEEEEEE--SS-EEEEEEEE
T ss_pred ------------EEEEEEEEECCCCCChhheeccCCCceEcccCCCcee-ecceEEEEEEEEeecCCCCceEEEEEEEEE
Confidence 1122333333468999999999999999999999999 99999999999987642 4677899999
Q ss_pred eecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEE--EEec
Q 018123 298 GTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDC--AINA 345 (360)
Q Consensus 298 G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~--a~~~ 345 (360)
|.|+..... ...+ ...++++|+++......+.+++ ++++
T Consensus 341 G~v~~~~~~----~~~~-----~~~g~~~Gl~~~~~~~~~dl~vs~g~~l 381 (404)
T PF03865_consen 341 GRVRGNKNN----QGWR-----SLAGLSAGLRLRYKQAQLDLEVSRGWPL 381 (404)
T ss_dssp EEEEESSSS-----EEE-----EEEEEEEEEEEESSSEEE----------
T ss_pred EEEecCCCC----CCCc-----eEEEEEEEEEEEEcceeeeecccccccc
Confidence 999975421 1111 1256667777666666666655 5666
No 11
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=73.67 E-value=1.2e+02 Score=31.43 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=46.0
Q ss_pred cceEEEEEEEEEEecCCceeEEEEEEeeecCCCCC--CCCCCCccccCCCCCeeeEEEEEEEEcCc---eEEEEEEEEec
Q 018123 271 GRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGR--LVPGNPALRQGKPGSGAGLGYGLRYRSPF---GSLQLDCAINA 345 (360)
Q Consensus 271 G~~~~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~--~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~---Gpl~~~~a~~~ 345 (360)
....+..++.+.|.+.+.+.+.+|+-.-....... .....+.|..+....-..+|+|+.|.-.+ --|.+||.|..
T Consensus 469 ~~~~~~~~ld~~y~~~~~l~~~af~~~q~~~s~Q~gs~~~~~~~W~~~~~D~~~~~G~G~~~~~l~~~kL~lg~dYsys~ 548 (637)
T PF11854_consen 469 ESDDYGYDLDASYQPSDDLSLYAFYNQQWIDSDQAGSQNFSTPDWTSDTEDKVTTVGAGFSYQGLMDDKLSLGLDYSYSD 548 (637)
T ss_pred cceeeeeeeeEEEEECCCeEEEEEEEeEeehhhhccccCccCCCccccccceeEEEEeceEeecccCccEEEeeeEEEec
Confidence 34445688999999999999999987665543221 00001122211122237899999999544 34666777665
Q ss_pred C
Q 018123 346 F 346 (360)
Q Consensus 346 ~ 346 (360)
.
T Consensus 549 ~ 549 (637)
T PF11854_consen 549 S 549 (637)
T ss_pred C
Confidence 4
No 12
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=32.72 E-value=3.1e+02 Score=23.32 Aligned_cols=28 Identities=7% Similarity=-0.038 Sum_probs=18.0
Q ss_pred ceEEEEEEEEEEecCC---ceeEEEEEEeee
Q 018123 272 RSCLVANTELTFPLNN---TLEGAVFMDCGT 299 (360)
Q Consensus 272 ~~~~~~~~e~r~~~~~---~~~~~~F~D~G~ 299 (360)
-..+.++.|+||-+.+ .+.+.++.-.|.
T Consensus 73 ~~~~~vqpE~Ryw~~~~~~G~f~G~~~~~~~ 103 (189)
T PF12099_consen 73 MKHWAVQPEYRYWFCEPFNGHFIGAHAGYGQ 103 (189)
T ss_pred EEEEEecceeEEEecccccceEEEEEEeEEE
Confidence 3456688899998875 345555554443
No 13
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=30.18 E-value=6.4e+02 Score=26.12 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=25.9
Q ss_pred CceeeeEEEeEEEeeeecCcceeeEEEEEEEEEEe
Q 018123 118 GVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPV 152 (360)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (360)
++......+.+...+.+++++.+.+.+.||++...
T Consensus 565 d~~~~~h~l~~~~~y~ls~~~~lrl~y~yEr~~~~ 599 (637)
T PF11854_consen 565 DYYSRQHNLNLYARYQLSKNMSLRLDYRYERYSDT 599 (637)
T ss_pred CceeeEEEEEEEEEEEeCCCeEEEEEEEEEeeecc
Confidence 45556666777667788889888888888886543
No 14
>PF01389 OmpA_membrane: OmpA-like transmembrane domain; InterPro: IPR000498 The ompA-like transmembrane domain is present in a number of different outer membrane proteins of several Gram-negative bacteria. Many of the proteins having this domain in the N-terminal also have the conserved bacterial outer membrane protein domain IPR006664 from INTERPRO at the C terminus. The outer membrane protein A of Escherichia coli (OmpA), is one of the most studied proteins in this group []. It has a multifunctional role. OmpA is required for the action of colicins K and L and for the stabilisation of mating aggregates in conjugation. It also serves as a receptor for a number of T-even like phages and can act as a porin with low permeability that allows slow penetration of small solutes []. OmpA consists of a regular, extended eight-stranded beta-barrel and appears to be constructed like an inverse micelle with large water-filled cavities, but does not form a pore. The cavities seem to be highly conserved during evolution. The structure corroborates the concept that all outer membrane proteins consist of beta-barrels []. The beta-barrel membrane anchor appears to be the outer membrane equivalent of the single-chain alpha-helix anchor of the inner membrane.; GO: 0009279 cell outer membrane, 0016021 integral to membrane; PDB: 1G90_A 1QJP_A 3NB3_C 1BXW_A 2GE4_A 2JMM_A 2K0L_A.
Probab=28.20 E-value=3.2e+02 Score=23.04 Aligned_cols=70 Identities=19% Similarity=0.372 Sum_probs=38.7
Q ss_pred eEEEEEEEEEEecCCceeEEEEEEeeecCC--CCCC-C-CCCCccccCCCCCeeeEEEEEEEE-cCceEEEEEEEEe
Q 018123 273 SCLVANTELTFPLNNTLEGAVFMDCGTDLG--SGRL-V-PGNPALRQGKPGSGAGLGYGLRYR-SPFGSLQLDCAIN 344 (360)
Q Consensus 273 ~~~~~~~e~r~~~~~~~~~~~F~D~G~~~~--~~~~-~-~~~~~~~~~~~~~~~s~G~Gl~~~-tp~Gpl~~~~a~~ 344 (360)
..+.+++.+.+|+.++|. +|.-+|..+- +.+. . .........+..+..-+|+|+.|. +|.-.+|++|-+-
T Consensus 77 ~g~~ls~k~~~pltd~l~--ly~k~G~~~~~~d~~~~~~~~~~~~~~~~~~~s~~~g~G~eY~lt~~~~~rleYq~~ 151 (183)
T PF01389_consen 77 QGITLSLKFSYPLTDDLD--LYAKAGAAYWQSDYKSSNTNSGSSITNSDDGVSPLAGLGLEYALTPNWSLRLEYQYI 151 (183)
T ss_dssp EEEEEEEEEEEESSSSEE--EEEEEEEEEEEEEEESSSS-SSS-BEEEEEEEEEEEEEEEEEEECTTEEEEEEECCE
T ss_pred EEEEEeEEEEEEccCCEE--EEEEeeEEEEEeccceecccccCcccccccccceEEEEEEEEEeCcCceeEEEEEEE
Confidence 346678888999998865 4444443322 1100 0 000001100112225688888887 4889999999763
No 15
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=27.85 E-value=5.2e+02 Score=24.31 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=8.7
Q ss_pred EeeeecCcceeeEEEEEEEE
Q 018123 130 ISEPISSKWSNTTSLKFEHV 149 (360)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~ 149 (360)
+.+.+.+++.+.+.+.|+..
T Consensus 303 ~~h~~~~~l~~~~~~~~~~~ 322 (381)
T PF10082_consen 303 WTHQLTPRLSLSLSAGYENR 322 (381)
T ss_pred EEEEeeeeEEEEEEEEEEEe
Confidence 33344444444444444443
No 16
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=25.84 E-value=3.2e+02 Score=21.53 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=44.3
Q ss_pred EEEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEc-CceEEEEEEEEecC-------
Q 018123 275 LVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRS-PFGSLQLDCAINAF------- 346 (360)
Q Consensus 275 ~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~t-p~Gpl~~~~a~~~~------- 346 (360)
+.+.+.+++++.+.+.+.+.+.+|....+... .... ...........+|+|+.|.. +.--|+++|.+..-
T Consensus 86 ~~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~G~~y~~~~~~~l~~~y~~~~~~~~~~~~ 163 (176)
T PF13505_consen 86 IGLNAGYNFPLSDKFSPYVGAGYGYYYYEIDI-DDFS-SSDSDSGFGFGLGAGVEYNISDNFSLNAEYRYTFYDSNKNDY 163 (176)
T ss_dssp EEEEEEEEEEESSSEEEEEEEEEEEEEEEECS-TSE---EEEEEEEEEEEEEEEEEESSTTEEEEEEEEEEEE--E-TTE
T ss_pred eeeeEEEEeccCCcEEEEEEEeeEEEEEEEee-ccce-eccCCCceEEEEEEEEEEEECCCEEEEEEEEEEEEEeeccCC
Confidence 55667777787777666666666654322210 0000 00011122378888898886 55666776655432
Q ss_pred CCeeEEEEeeec
Q 018123 347 QQKTLYFGITNL 358 (360)
Q Consensus 347 ~~~~~~f~iG~~ 358 (360)
....+.+++|..
T Consensus 164 ~~~~~~~g~~y~ 175 (176)
T PF13505_consen 164 DNNGFQLGVGYR 175 (176)
T ss_dssp EEEEEEEEEEEE
T ss_pred cEEEEEEEEEEE
Confidence 135666666654
No 17
>PRK10808 outer membrane protein A; Reviewed
Probab=23.83 E-value=5.1e+02 Score=24.27 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=35.3
Q ss_pred EEEEEEEEEecCCceeEEEEEEeeecCCCCCCCCC-CCccccCCCCCeeeEEEEEEEEc-CceEEEEEEEEec
Q 018123 275 LVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPG-NPALRQGKPGSGAGLGYGLRYRS-PFGSLQLDCAINA 345 (360)
Q Consensus 275 ~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~-~~~~~~~~~~~~~s~G~Gl~~~t-p~Gpl~~~~a~~~ 345 (360)
+.+++-+.||+.+.+.+.+-+-.+. |....+... .......+..+...+|+|+.|.. +.--++++|-+-.
T Consensus 100 ~~l~~~~~~~~~~~~~~Y~k~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~~~~~~~~~~ey~~~~ 171 (351)
T PRK10808 100 VQLTAKLGYPITDDLDVYTRLGGMV-WRADTKSNVPGARGKDHDTGVSPVFAGGVEYAITKNWATRLEYQWTN 171 (351)
T ss_pred eEEEEEeeeecCCccceeecceeeE-EecccccccccccccccCcceeeEEEEEEEEEecCCeeEEEEEEEEe
Confidence 4566667778877655443333333 221110000 00011112233366788888874 6677888887643
No 18
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=20.77 E-value=7.2e+02 Score=25.73 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=40.1
Q ss_pred CeEEEEEEEEEcc---ce-EEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEec
Q 018123 12 AKIDVNVDFTHKL---CA-SLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKG 68 (360)
Q Consensus 12 ~~v~l~v~v~E~~---~~-~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g 68 (360)
+...+.+.++++. .+ .+.+.+.++. . ...+.+++..+++++.+..+.+++...
T Consensus 410 ~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~---~-~~~~~~~~~~P~~~~~~~~~~~~~~~~ 466 (741)
T TIGR03303 410 SGLSFNASISERNFLGTGNRLSLSANKSS---L-STSYSLSFTDPYFTDDGVSLGFSIFYS 466 (741)
T ss_pred CceEEEEEEEEecccccccEEEEEEEecc---c-eEEEEEEEECCCCcCCCeEEEEEEEEE
Confidence 4567788888876 44 5777776665 3 456899999999999998888887654
Done!