Query 018123
Match_columns 360
No_of_seqs 191 out of 1393
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 100.0 1.3E-31 4.4E-36 267.0 33.7 312 10-359 195-554 (554)
2 2lhf_A Outer membrane protein 42.6 1.2E+02 0.0043 24.2 8.5 68 273-343 73-142 (179)
3 3nb3_A Outer membrane protein 33.0 2.1E+02 0.0072 25.1 9.3 68 274-344 97-165 (346)
4 1qjp_A Outer membrane protein 26.9 1.9E+02 0.0066 22.1 7.1 68 275-345 77-145 (171)
5 3qra_A AIL, attachment invasio 22.0 2.8E+02 0.0094 21.4 8.2 37 322-358 116-156 (157)
6 2k0l_A Outer membrane protein 15.7 4.4E+02 0.015 21.1 9.7 69 274-344 93-166 (216)
7 3fip_A Outer membrane usher pr 14.6 6.7E+02 0.023 23.6 8.9 51 275-345 213-264 (493)
8 1p4t_A Outer membrane protein 12.4 4.5E+02 0.016 19.6 7.1 23 322-344 108-131 (155)
9 2jmm_A Outer membrane protein 11.2 5.1E+02 0.018 19.5 13.6 26 320-345 104-134 (156)
10 2qdz_A TPSB transporter FHAC; 9.1 1.1E+03 0.037 21.9 13.2 14 70-83 306-319 (554)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=100.00 E-value=1.3e-31 Score=266.95 Aligned_cols=312 Identities=13% Similarity=0.074 Sum_probs=213.7
Q ss_pred CCCeEEEEEEEEEccceEEEeCCcccC--CCCccceEEEEEEeeecccccCceEEEEEEecc-------eEEeEEEEeec
Q 018123 10 GKAKIDVNVDFTHKLCASLMLPPPRNT--SSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGL-------YDSNVLVAYRR 80 (360)
Q Consensus 10 ~~~~v~l~v~v~E~~~~~~~~g~gy~~--~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~-------~~~~~~~~y~~ 80 (360)
+++.++|+|+|+|+++..+.++++..+ .....+..+.+.++++|++|.|++++++++.+. ..+.+.++|+.
T Consensus 195 ~~g~~~l~v~v~e~~~~~~~~g~~~~g~g~~~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~ 274 (554)
T 2qdz_A 195 EYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSV 274 (554)
T ss_dssp STTEEEEEEEEEECCSCEEEEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEE
T ss_pred CCCeeEEEEEEeeCCcEEEEEEEcCCCCCCCCccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEE
Confidence 468999999999988877777665422 222456899999999999999999999999985 67899999999
Q ss_pred CCCCCCCCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeee--cCcceeeEEEEEEEEEEec-CCCC
Q 018123 81 PRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPI--SSKWSNTTSLKFEHVRPVN-DDWR 157 (360)
Q Consensus 81 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~g~ 157 (360)
|+..+ .+.+++.+..... .+.... ....+...+..+++.+++++ ...+.+++++.+.+.+..+ ..+.
T Consensus 275 P~~~~----~~~~~~~~~~~~~----~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (554)
T 2qdz_A 275 PLGRT----RLDLQTGYSTYRN----LLKTRY--GQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGT 344 (554)
T ss_dssp EETTE----EEEEEEEEEEEEC----CCSSSS--CCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTT
T ss_pred EEecC----eEEEEEEEeEEEE----EccCCc--ceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCc
Confidence 98631 3444444432210 000000 01122233344555555554 4456566666655544322 1111
Q ss_pred ---eeeeccCCCceEeeCCCCcc--ceeeeeeeEEe-------------ecCCceeeEEEEEEEEeEeC---ccCceEeE
Q 018123 158 ---SITRDLDGFPVTCSGSNHDS--MVVLKQESRYA-------------KANDRSFSRFSMQIEQGIPV---LSKWLIFN 216 (360)
Q Consensus 158 ---~~~~~~~~~~~~~~~D~rD~--~~~P~~g~~~~-------------~~~d~~f~~~~~~~~~~~pl---~~~~~~~~ 216 (360)
........+.+++++|++|. .+.|+-++..+ .+++.+|.|+.+++++++|+ ...+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~-- 422 (554)
T 2qdz_A 345 RLDVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQW-- 422 (554)
T ss_dssp SCCCEEEEEEEEEEEEEEEEECSSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEE--
T ss_pred CccccCceEEEEEEEEEEEEEecCeEEEEEEEEEecCCCCCCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEE--
Confidence 11223456778888888876 55553322211 13578999999999999996 332221
Q ss_pred EEEEEEeeceecCceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEEEEEEEEEEec-----C--Cce
Q 018123 217 RFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPL-----N--NTL 289 (360)
Q Consensus 217 ~~~~~~~~~~~~g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~~~~~e~r~~~-----~--~~~ 289 (360)
.+++.++...+++|++|+|++||..+||||++++++||+..+.+++|+|+|+ . ..+
T Consensus 423 -----------------~~~~~~q~~~~~lp~~e~f~lGG~~sVRGy~~~~l~pGd~g~~~~~El~~~~~~~~~~~~~~~ 485 (554)
T 2qdz_A 423 -----------------ASQLGFQYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASV 485 (554)
T ss_dssp -----------------EEEEEEEECSSCSSSSEECCSCCCCCCTTCCCCCSCCSSCSSCCEESEEEEEEEEEEECCSSC
T ss_pred -----------------EEEEEeEecCCCCCcHHhEecCCCCeECCcccccccCCCccEEEEEEEEeeccccccCccceE
Confidence 1233333334579999999999999999999999998999999999999996 3 478
Q ss_pred eEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecC-------CCeeE-EEEeeecc
Q 018123 290 EGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAF-------QQKTL-YFGITNLA 359 (360)
Q Consensus 290 ~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~-------~~~~~-~f~iG~~~ 359 (360)
.+.+|+|+|+||+...+. ...+ +.|+|+|+||.+|++|+++++|+|+. +..+| ||+||..|
T Consensus 486 ~~~~F~D~G~v~~~~~~~--~~~~-------~~g~G~Glr~~~~~~~l~l~~a~pl~~~~~~~~~~~~~~~fsig~~F 554 (554)
T 2qdz_A 486 APFVGADVGALKSNHPDA--RTIR-------MAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF 554 (554)
T ss_dssp EEEEEEEEEEEECSSSSC--CEEE-------EEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred EEEEEEEEEEEecCCCCC--CCCE-------EEEEEEEEEEecCcEEEEEEEEeeccCCcccccCCceEEEEEEEEEC
Confidence 999999999999765311 1223 38999999999999999999999984 24789 99999865
No 2
>2lhf_A Outer membrane protein H1; beta-barrel; NMR {Pseudomonas aeruginosa}
Probab=42.56 E-value=1.2e+02 Score=24.21 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=40.4
Q ss_pred eEEEEEEEEEEecCCc-eeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEc-CceEEEEEEEE
Q 018123 273 SCLVANTELTFPLNNT-LEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRS-PFGSLQLDCAI 343 (360)
Q Consensus 273 ~~~~~~~e~r~~~~~~-~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~t-p~Gpl~~~~a~ 343 (360)
..+.++..+++|+.++ +.+.+=+-+|..+.+.+.. . .....+....+++++|+.|.. |---+++.|-+
T Consensus 73 ~~~~~~~dy~~~l~~~~~~~y~Ga~~G~~~~~~~~~-~--~~~~~~~~fa~g~~aG~~Y~~t~~~~l~~~YRy 142 (179)
T 2lhf_A 73 QNLLGSYDAFLPIGDNNTKLFGGATLGLVKLEQDGK-G--FKRDSDVGYAAGLQAGILQELSKNASIEGGYRY 142 (179)
T ss_dssp EEEEEEEECCCBCSSSSCBEEEEEEEEEEEECCSCS-S--SCCCCCCCEEEEEEEEEEEECSSSCEEEEEEEE
T ss_pred EEEeeEEEEEeecCCCCEEEEEEEEEeEEEEEcccc-c--ccccccccEEEEEeeEEEEEcCCCeEEEEEEEE
Confidence 3345677777888776 7766666677666543210 0 000111234489999999984 66666666644
No 3
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=33.00 E-value=2.1e+02 Score=25.10 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=37.3
Q ss_pred EEEEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEE-cCceEEEEEEEEe
Q 018123 274 CLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYR-SPFGSLQLDCAIN 344 (360)
Q Consensus 274 ~~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~-tp~Gpl~~~~a~~ 344 (360)
.+.+.+.+.|++.+.|.+.+-+-.+......... .... .......+.+|+|+.|. ++-.-++++|-+-
T Consensus 97 ~~~l~~~~~y~~~~~~~~Y~~~G~~~~~~~~~~~-~~~~--~~~~~~~~~~G~Gv~y~lt~~~~l~~ey~y~ 165 (346)
T 3nb3_A 97 GVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSN-VYGK--NHDTGVSPVFAGGVEYAITPEIATRLEYQWT 165 (346)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEEEEEEECS-SSCE--EEEEEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred eeEEEEEEeeecCCcEeEeeeeeeeEEeeeeeec-CcCc--ccCCccceeEEeEEEEEeCCCeeEEEEEEEE
Confidence 3457778888887766554444444332210000 0000 00111237788999997 4777888888774
No 4
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=26.90 E-value=1.9e+02 Score=22.07 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=35.7
Q ss_pred EEEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEE-cCceEEEEEEEEec
Q 018123 275 LVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYR-SPFGSLQLDCAINA 345 (360)
Q Consensus 275 ~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~-tp~Gpl~~~~a~~~ 345 (360)
..+.+.+.|++.+++.+.+-+-++....+......... .+....+.+|+|+.|. ++--.++++|-+-.
T Consensus 77 ~~l~~~~~y~~~~~~~~Y~~~G~~~~~~~~~~~~~~~~---~~~~~~~~~G~G~~y~~~~~~~~~~ey~~~~ 145 (171)
T 1qjp_A 77 VQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKN---HDTGVSPVFAGGVEYAITPEIATRLEYQWTN 145 (171)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEEEEEEEECSSSCEE---EEEEEEEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEEEccCcEEEEEeeeEEEEEEEeeccccccc---ccCccceEEEeeEEEEECcceEEEEEEEEEe
Confidence 45666777888666554443333332211100000000 0111237889999997 47788888887654
No 5
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=22.05 E-value=2.8e+02 Score=21.44 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=25.0
Q ss_pred eeEEEEEEEE-cCceEEEEEEEEecCC---CeeEEEEeeec
Q 018123 322 AGLGYGLRYR-SPFGSLQLDCAINAFQ---QKTLYFGITNL 358 (360)
Q Consensus 322 ~s~G~Gl~~~-tp~Gpl~~~~a~~~~~---~~~~~f~iG~~ 358 (360)
..+|+|+.|. +|--.++++|-+..-+ ...|-++++..
T Consensus 116 ~~~GaGvey~~~~n~~~~~eY~y~~~~d~~~~~~~vGv~Yr 156 (157)
T 3qra_A 116 LAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYR 156 (157)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred eEEEEEEEEEecCCEEEEEEEEEEecCCCcccEEEEEEEeE
Confidence 6788999987 4778899998775422 24455555543
No 6
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=15.74 E-value=4.4e+02 Score=21.10 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=36.6
Q ss_pred EEEEEEEEEEecCCceeEEEEEEeeecC--CCCCCCCC--CCccccCCCCCeeeEEEEEEEEc-CceEEEEEEEEe
Q 018123 274 CLVANTELTFPLNNTLEGAVFMDCGTDL--GSGRLVPG--NPALRQGKPGSGAGLGYGLRYRS-PFGSLQLDCAIN 344 (360)
Q Consensus 274 ~~~~~~e~r~~~~~~~~~~~F~D~G~~~--~~~~~~~~--~~~~~~~~~~~~~s~G~Gl~~~t-p~Gpl~~~~a~~ 344 (360)
.+.+.+.+.|++.+++.+ |..+|-.+ .+...... ............+.+|+|+.|.. +---++++|-+-
T Consensus 93 ~~~l~~~~~y~~~~~~~~--Y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~G~~y~lt~~~~l~~ey~y~ 166 (216)
T 2k0l_A 93 GVQLTAKLGYPITDDLDI--YTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQWV 166 (216)
T ss_dssp EEEEEEEEEEESSSSEEE--EEEEEEEEEECCCCCSCCCSSSCCCCCCEEEEEEEEEEEEEECSSSCEEEEEESSC
T ss_pred EEEEEEEEEEeccCcEEE--EEEeeEEEEEeeeeeecccCcccccccCCccceEEEEEEEEecCCCeeEEEEEEEE
Confidence 366777788888766554 44444432 21110000 00001011223478899999984 667888888654
No 7
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein translocase, cell membrane, cell outer fimbrium, transmembrane, transport; 3.15A {Escherichia coli} PDB: 2vqi_A*
Probab=14.60 E-value=6.7e+02 Score=23.58 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=35.4
Q ss_pred EEEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEc-CceEEEEEEEEec
Q 018123 275 LVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRS-PFGSLQLDCAINA 345 (360)
Q Consensus 275 ~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~t-p~Gpl~~~~a~~~ 345 (360)
..++.+++|-|.+.+.+..=+.+. . ++ .++++|+.+.+ ++|.|.+|++...
T Consensus 213 ~f~~gt~~yGl~~~~Tl~gg~~~s----~--------~Y--------~a~~~G~~~~lg~~Ga~s~d~t~S~ 264 (493)
T 3fip_A 213 VFATGEASWGLSNQWSLYGGAVLA----G--------DY--------NALAAGAGWDLGVPGTLSADITQSV 264 (493)
T ss_dssp EEEEEEEEEECCSSEEEEEEEEEE----T--------TE--------EEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred cEEEEEEEeCCCcccchhhhhhhh----h--------ch--------hhhhcccccccccccEEEEEEEeee
Confidence 457888899998876554322211 1 12 68899999996 6899999987654
No 8
>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} SCOP: f.4.1.1
Probab=12.39 E-value=4.5e+02 Score=19.57 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=17.5
Q ss_pred eeEEEEEEEE-cCceEEEEEEEEe
Q 018123 322 AGLGYGLRYR-SPFGSLQLDCAIN 344 (360)
Q Consensus 322 ~s~G~Gl~~~-tp~Gpl~~~~a~~ 344 (360)
+.+|+|+.|. +|--.++++|-+-
T Consensus 108 ~~~g~Gv~y~~~~~~~l~~ey~y~ 131 (155)
T 1p4t_A 108 LGVLTGVSYAVTPNVDLDAGYRYN 131 (155)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEEEEEE
Confidence 6778899887 4777888887653
No 9
>2jmm_A Outer membrane protein A; NMR {Escherichia coli}
Probab=11.23 E-value=5.1e+02 Score=19.50 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=20.8
Q ss_pred CeeeEEEEEEEE-----cCceEEEEEEEEec
Q 018123 320 SGAGLGYGLRYR-----SPFGSLQLDCAINA 345 (360)
Q Consensus 320 ~~~s~G~Gl~~~-----tp~Gpl~~~~a~~~ 345 (360)
....+|+|+.|. +|.-.++++|-+-.
T Consensus 104 ~~~~~G~Gvey~~~~~~~~~~~~~~eY~~~~ 134 (156)
T 2jmm_A 104 VSPVFAGGVEYVIRRRITPEIATRLEYQWTN 134 (156)
T ss_dssp CCEEEEEEEEEECSSSCSSSEEEEEEEEEES
T ss_pred cCeEEEEEEEEeeccccCcCeEEEEEEEEEc
Confidence 348899999998 57788899887754
No 10
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=9.09 E-value=1.1e+03 Score=21.87 Aligned_cols=14 Identities=7% Similarity=-0.197 Sum_probs=10.1
Q ss_pred eEEeEEEEeecCCC
Q 018123 70 YDSNVLVAYRRPRP 83 (360)
Q Consensus 70 ~~~~~~~~y~~P~~ 83 (360)
....+.+++..|+.
T Consensus 306 ~s~~~~~~~~~~~~ 319 (554)
T 2qdz_A 306 NSRSFGLKATRLLY 319 (554)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred eEEEEEEEEEEEEE
Confidence 34567888888875
Done!