Query 018123
Match_columns 360
No_of_seqs 191 out of 1393
Neff 9.1
Searched_HMMs 13730
Date Mon Mar 25 10:18:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018123.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018123hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qjpa_ f.4.1.1 (A:) Outer mem 47.4 28 0.0021 25.2 7.3 69 274-345 76-145 (171)
2 d1p4ta_ f.4.1.1 (A:) Outer mem 34.9 56 0.0041 23.2 7.1 23 322-344 108-131 (155)
3 d1qj8a_ f.4.1.1 (A:) Outer mem 19.4 1.4E+02 0.01 20.8 7.7 83 273-358 61-147 (148)
4 d1t16a_ f.4.3.4 (A:) Long-chai 10.2 3.9E+02 0.028 21.3 15.9 26 123-148 366-391 (427)
5 d1qjpa_ f.4.1.1 (A:) Outer mem 5.8 4.2E+02 0.031 18.0 10.3 24 123-146 120-143 (171)
6 g1qd6.1 f.4.2.1 (A:,C:) Outer 4.3 3.3E+02 0.024 21.2 3.7 13 335-347 205-217 (253)
7 d3cjsb1 d.47.1.1 (B:1-70) Ribo 3.1 5.3E+02 0.039 15.5 3.1 20 10-29 49-68 (70)
8 d1vqqa1 d.17.4.5 (A:27-138) Pe 2.8 7.2E+02 0.052 16.1 5.3 25 322-346 67-91 (112)
9 d1mmsa2 d.47.1.1 (A:8-70) Ribo 2.7 5.8E+02 0.042 14.9 2.9 20 9-28 42-61 (63)
10 d1j2oa1 g.39.1.3 (A:1-30) Rhom 2.6 1.9E+02 0.014 14.5 0.4 10 245-254 10-19 (30)
No 1
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=47.37 E-value=28 Score=25.21 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=40.6
Q ss_pred EEEEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEc-CceEEEEEEEEec
Q 018123 274 CLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRS-PFGSLQLDCAINA 345 (360)
Q Consensus 274 ~~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~t-p~Gpl~~~~a~~~ 345 (360)
.+.+.+.+.+++.+.+.+.+.+-++.......... .... .+......+|+|+.|.. |---++++|-+-.
T Consensus 76 ~~~l~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~-~~~~--~~~~~~~~~G~G~~y~i~~~~~l~~ey~~~~ 145 (171)
T d1qjpa_ 76 GVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNV-YGKN--HDTGVSPVFAGGVEYAITPEIATRLEYQWTN 145 (171)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEEEEEEECSS-SCEE--EEEEEEEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEEEecCCceeEEEEeeeEEEEEEeeccc-cccc--ccCccceEEEeEEEEEeCCCEEEEEEEEEEe
Confidence 34567778888888777666666655432211100 0000 01122367889999974 7788899887643
No 2
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=34.92 E-value=56 Score=23.17 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.0
Q ss_pred eeEEEEEEEE-cCceEEEEEEEEe
Q 018123 322 AGLGYGLRYR-SPFGSLQLDCAIN 344 (360)
Q Consensus 322 ~s~G~Gl~~~-tp~Gpl~~~~a~~ 344 (360)
..+|+|+.|. +|--.++++|-|.
T Consensus 108 ~~~g~G~~y~lt~n~~~~~eyry~ 131 (155)
T d1p4ta_ 108 LGVLTGVSYAVTPNVDLDAGYRYN 131 (155)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEEEEEEEEecCCEEEEEEEEEE
Confidence 7889999997 5888899988764
No 3
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=19.39 E-value=1.4e+02 Score=20.76 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=42.4
Q ss_pred eEEEEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEE-cCceEEEEEEEEecCC---C
Q 018123 273 SCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYR-SPFGSLQLDCAINAFQ---Q 348 (360)
Q Consensus 273 ~~~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~-tp~Gpl~~~~a~~~~~---~ 348 (360)
....+.+...+|+.+.+.+.+-+-.+...-+.+.. ..........-..+|+|+.|. ++---++++|-+..-. -
T Consensus 61 ~~~~~~~~~~~~~~~~~~~Y~~~G~a~~~~~~~~~---~~~~~~~~~~g~~~G~Gvey~l~~n~~~~~eY~~~~~~~~d~ 137 (148)
T d1qj8a_ 61 QYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEY---PTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV 137 (148)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEET---TTEEEEEEEEEEEEEEEEEECSSTTEEEEEEEEEEEETTEEE
T ss_pred eEEEEEEEEEEEcCCceeEEEEeEEEEEEEEeccC---CCccccccccceeEeeeEEEEecCCEEEEEEEEEEeCCCcee
Confidence 34556677778887765433333333222111000 000000011226789999997 4778889998765432 2
Q ss_pred eeEEEEeeec
Q 018123 349 KTLYFGITNL 358 (360)
Q Consensus 349 ~~~~f~iG~~ 358 (360)
..|.++++..
T Consensus 138 ~~~~~Gv~Yr 147 (148)
T d1qj8a_ 138 GTWIAGVGYR 147 (148)
T ss_dssp EEEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 4555666543
No 4
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=10.24 E-value=3.9e+02 Score=21.28 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=16.8
Q ss_pred eEEEeEEEeeeecCcceeeEEEEEEE
Q 018123 123 RLSLGLDISEPISSKWSNTTSLKFEH 148 (360)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (360)
+..++++.++++.+++.+.+++.|..
T Consensus 366 ~~~~s~G~~~~~~~~~~id~a~~y~~ 391 (427)
T d1t16a_ 366 RFWLSAGTTYAFNKDASVDVGVSYMH 391 (427)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCeEEEEEEEEEE
Confidence 34455555567777787777777654
No 5
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.83 E-value=4.2e+02 Score=17.97 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=17.0
Q ss_pred eEEEeEEEeeeecCcceeeEEEEE
Q 018123 123 RLSLGLDISEPISSKWSNTTSLKF 146 (360)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~ 146 (360)
.+.+++++.+.++++|.+.+.++|
T Consensus 120 ~~~~G~G~~y~i~~~~~l~~ey~~ 143 (171)
T d1qjpa_ 120 SPVFAGGVEYAITPEIATRLEYQW 143 (171)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEeEEEEEeCCCEEEEEEEEE
Confidence 356677777788888877666554
No 6
>g1qd6.1 f.4.2.1 (A:,C:) Outer membrane phospholipase A (OMPLA) {Escherichia coli [TaxId: 562]}
Probab=4.27 E-value=3.3e+02 Score=21.19 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=6.6
Q ss_pred eEEEEEEEEecCC
Q 018123 335 GSLQLDCAINAFQ 347 (360)
Q Consensus 335 Gpl~~~~a~~~~~ 347 (360)
|.+++++.+|+.+
T Consensus 205 G~vel~~sfPl~~ 217 (253)
T g1qd6.1 205 GGAELGLSYPITK 217 (253)
T ss_dssp EEEEEEEEEEEET
T ss_pred ceEEEEEEEeccC
Confidence 4455555555543
No 7
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=3.11 E-value=5.3e+02 Score=15.49 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=14.7
Q ss_pred CCCeEEEEEEEEEccceEEE
Q 018123 10 GKAKIDVNVDFTHKLCASLM 29 (360)
Q Consensus 10 ~~~~v~l~v~v~E~~~~~~~ 29 (360)
.+..|++.|+|.+.++-.|.
T Consensus 49 ~g~~vpv~Itv~~Drsf~f~ 68 (70)
T d3cjsb1 49 GDAIVPVEITIYADRSFTFV 68 (70)
T ss_dssp CSCEEEEEEEEETTSCEEEE
T ss_pred CCCceeeEEEEeCCCcEEEE
Confidence 35568999999987665554
No 8
>d1vqqa1 d.17.4.5 (A:27-138) Penicillin binding protein 2a (PBP2A), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=2.78 E-value=7.2e+02 Score=16.12 Aligned_cols=25 Identities=8% Similarity=0.286 Sum_probs=20.3
Q ss_pred eeEEEEEEEEcCceEEEEEEEEecC
Q 018123 322 AGLGYGLRYRSPFGSLQLDCAINAF 346 (360)
Q Consensus 322 ~s~G~Gl~~~tp~Gpl~~~~a~~~~ 346 (360)
..+-+-+.|.|+.|++.++...++.
T Consensus 67 ~~v~y~~~m~T~aG~~~~~~~~~l~ 91 (112)
T d1vqqa1 67 KRVDAQYKIKTNYGNIDRNVQFNFV 91 (112)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCcceeEeeEEEEE
Confidence 4566778999999999988877764
No 9
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=2.72 E-value=5.8e+02 Score=14.94 Aligned_cols=20 Identities=5% Similarity=0.017 Sum_probs=14.0
Q ss_pred CCCCeEEEEEEEEEccceEE
Q 018123 9 AGKAKIDVNVDFTHKLCASL 28 (360)
Q Consensus 9 ~~~~~v~l~v~v~E~~~~~~ 28 (360)
.....|+|.|+|.+.++-.|
T Consensus 42 ~~g~~vpV~I~v~~DrsF~f 61 (63)
T d1mmsa2 42 KAGMILPVVITVYEDKSFTF 61 (63)
T ss_dssp SCSSEEEEEEEECTTSCEEE
T ss_pred cCCCeEeEEEEEeCCCcEEE
Confidence 34556888999888665554
No 10
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.65 E-value=1.9e+02 Score=14.52 Aligned_cols=10 Identities=0% Similarity=-0.034 Sum_probs=7.3
Q ss_pred CCCccccccc
Q 018123 245 DMAPYQAFAI 254 (360)
Q Consensus 245 ~~p~~~~f~l 254 (360)
.-|+.|||+|
T Consensus 10 ~~~I~DRflL 19 (30)
T d1j2oa1 10 QQNIGDRYFL 19 (30)
T ss_dssp CSCBCSSEEE
T ss_pred CCcchHHHHH
Confidence 4577888876
Done!