BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018126
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
pdb|1VM8|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
Length = 534
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 145/339 (42%), Positives = 193/339 (56%), Gaps = 17/339 (5%)
Query: 28 LLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSL------RSQGLP 81
L +RL GQE W+ELS ++ L ++++ + ++ R ++ Q
Sbjct: 18 LKQRLSQAGQEHLLQFWNELSEAQQXELYXELQAXNFEELNSFFRKAIGEFDRSSHQEKV 77
Query: 82 VAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGC 141
A EPVP R V R ++ + W GL IS K+AVLLL+GGQGTRLG S PKG
Sbjct: 78 DARXEPVP-RQVLGSATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGX 136
Query: 142 VNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201
++GLPS K+LFQ+QAERIL +Q+LA E I WYI TS T ++T+++F
Sbjct: 137 YDVGLPSHKTLFQIQAERILKLQQLA-----EKHHGNKCTIPWYIXTSGRTXESTKEFFT 191
Query: 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDM 261
HK+FGL+ + V FFQQG +P S DG+ I+E KV+ APDGNGG+Y AL + ++ED
Sbjct: 192 KHKFFGLKKENVVFFQQGXLPAXSFDGKIILEEKNKVSXAPDGNGGLYRALAAQNIVEDX 251
Query: 262 ATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXXXX 321
RGI I Y VDN LV+VADP F+G+ I KG GAKVV K P E
Sbjct: 252 EQRGICSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGV- 310
Query: 322 PLTVVEYSELDPSLASAINQET-GRLRFCWSNVCTFAST 359
VVEYSE+ SLA+A + + GRL F N+ T
Sbjct: 311 -YQVVEYSEI--SLATAQRRSSDGRLLFNAGNIANHFFT 346
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 194/335 (57%), Gaps = 17/335 (5%)
Query: 32 LKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLR------SQGLPVAAI 85
L GQE W+EL ++ L ++++++ ++ + ++ Q A +
Sbjct: 10 LSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARM 69
Query: 86 EPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIG 145
EPVP R V R D+ + W GL IS K+AVLLL+GGQGTRLG + PKG ++G
Sbjct: 70 EPVP-REVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVG 128
Query: 146 LPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 205
LPS K+LFQ+QAERIL +Q++A E I WYIMTS T ++T+++F HKY
Sbjct: 129 LPSRKTLFQIQAERILKLQQVA-----EKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKY 183
Query: 206 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG 265
FGL+ + V FFQQG +P +S DG+ I+E KV+ APDGNGG+Y AL + ++EDM RG
Sbjct: 184 FGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRG 243
Query: 266 IKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXXXXPLTV 325
I I Y VDN LV+VADP F+G+ I KG GAKVV K P E V
Sbjct: 244 IWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGV--YQV 301
Query: 326 VEYSELDPSLASAINQET-GRLRFCWSNVCTFAST 359
VEYSE+ SLA+A + + GRL F N+ T
Sbjct: 302 VEYSEI--SLATAQKRSSDGRLLFNAGNIANHFFT 334
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 194/335 (57%), Gaps = 17/335 (5%)
Query: 32 LKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLR------SQGLPVAAI 85
L GQE W+EL ++ L ++++++ ++ + ++ Q A +
Sbjct: 10 LSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARM 69
Query: 86 EPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIG 145
EPVP R V R D+ + W GL IS K+AVLLL+GGQGTRLG + PKG ++G
Sbjct: 70 EPVP-REVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVG 128
Query: 146 LPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 205
LPS K+LFQ+QAERIL +Q++A E I WYIMTS T ++T+++F HKY
Sbjct: 129 LPSRKTLFQIQAERILKLQQVA-----EKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKY 183
Query: 206 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG 265
FGL+ + V FFQQG +P +S DG+ I+E KV+ APDGNGG+Y AL + ++EDM RG
Sbjct: 184 FGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRG 243
Query: 266 IKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXXXXPLTV 325
I I Y VDN LV+VADP F+G+ I KG GAKVV K P E V
Sbjct: 244 IWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGV--YQV 301
Query: 326 VEYSELDPSLASAINQET-GRLRFCWSNVCTFAST 359
VEYSE+ SLA+A + + GRL F N+ T
Sbjct: 302 VEYSEI--SLATAQKRSSDGRLLFNAGNIANHFFT 334
>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The Apo-Like
Form
pdb|2YQH|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQH|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQJ|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQJ|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQS|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Product-Binding Form
Length = 486
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 197/337 (58%), Gaps = 12/337 (3%)
Query: 26 QALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLP-----RVDRIIRCSLRSQGL 80
Q +++ K Q+ F +D L+ D++ + + +++ P V++ I+ S +
Sbjct: 7 QQIIDSFKQANQDQLFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVEQAIQFSQTNS-- 64
Query: 81 PVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKG 140
+P ++ + + D + W ++GLKAI +G++AVLL++GGQGTRLGSS PKG
Sbjct: 65 TSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKG 124
Query: 141 CVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200
C NI LPS KSLFQ+QAE+IL +++LA Q + I+WYIMTS T +AT +F
Sbjct: 125 CFNIELPSQKSLFQIQAEKILKIEQLAQQYLK---STKKPIINWYIMTSGPTRNATESFF 181
Query: 201 EGHKYFGLESDQVTFFQQGTIPCVSKDG-RFIMETPYKVAKAPDGNGGVYSALKSSKLLE 259
+ YFGL S QV FF QGT+PC + G + ++E + ++PDGNGG+Y ALK + +L+
Sbjct: 182 IENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILD 241
Query: 260 DMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXX 319
D+ ++GIK+I Y VDN LV+VADP F+G+ I K KVVRK E
Sbjct: 242 DLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQD 301
Query: 320 XXPLTVVEYSELDPSLASAIN-QETGRLRFCWSNVCT 355
V+EYSE+ LA+ + Q++ +L +N+
Sbjct: 302 NQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVN 338
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 132/236 (55%), Gaps = 7/236 (2%)
Query: 104 RERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCV 163
+E +++ GL+ IS GK A++ +GGQG+RLG PKG + KS+FQ+ +ER+L +
Sbjct: 21 KEHYYR-GLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRL 79
Query: 164 QRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPC 223
Q LA SE + IHW++MT+ T + YF+ H+YFGL S+Q+ F QG +P
Sbjct: 80 QELA----SEYSHQKNVMIHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPV 135
Query: 224 VSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD 283
V +G+ + E K AP+G+GG++ ALK + +LE M +GIKY + VDN L + D
Sbjct: 136 VDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVD 195
Query: 284 PTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXXXXPLTVVEYSELDPSLASAI 339
P +GY K+V+K + +E + VVEY+EL L +
Sbjct: 196 PNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQER--IKVVEYTELTDELNKQL 249
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 34/171 (19%)
Query: 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGS 177
KL V+ L+GG GT +G PK IG+ + + L ++I + + +
Sbjct: 126 NKLVVVKLNGGLGTSMGCKGPKSL--IGVRNENTFLDLTVQQIEHLNK-----------T 172
Query: 178 GSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYK 237
+ + +M S TD+ T+K + + + + ++ F Q P ++K E+
Sbjct: 173 YNTDVPLVLMNSFNTDEDTKKILQKYNHCRV---KIYTFNQSRYPRINK------ESLLP 223
Query: 238 VAK------------APDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276
VAK P G+G +Y++ +S LL+ G +YI +DN
Sbjct: 224 VAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDN 274
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSG 178
KLAVL L+GG GT +G PK + + G + L +I + R Q S+
Sbjct: 92 KLAVLKLNGGLGTSMGCVGPKSVIEVR--EGNTFLDLSVRQIEYLNR---QYDSD----- 141
Query: 179 SAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKV 238
+ +M S TD T K + ++ F Q P V KD + T Y
Sbjct: 142 ---VPLLLMNSFNTDKDTEHLI---KKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDS 195
Query: 239 ---AKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKG 294
A P G+G ++ +L S L+ + +G + + DN L D L + I+ G
Sbjct: 196 PLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKILNHMIETG 253
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 18/220 (8%)
Query: 88 VPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLP 147
+PE+S+S VE ++ + G + VL L+GG GT +G + PK + +
Sbjct: 47 IPEKSISPVE--SLPFLQGIETKGENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQV--K 102
Query: 148 SGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 207
+G++ A ++ +++ + + + +M S T T+ + +
Sbjct: 103 NGQTFLDFTALQLEHFRQVR-----------NCNVPFMLMNSFSTSGETKNFLRKYPTLY 151
Query: 208 LESDQVTFFQQGTIPCVSKDGRF--IMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG 265
D Q +P + +D F E P G+G VY+ L SS L+ + +G
Sbjct: 152 EVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKG 211
Query: 266 IKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA 305
+Y+ DN L D L Y +K + +V R+
Sbjct: 212 YRYMFISNGDN-LGATLDVRLLDYMHEKQLGFLMEVCRRT 250
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Query: 126 SGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWY 185
+GG GT +G + PK + + G + L + Q+ + G +
Sbjct: 86 NGGLGTTMGCTGPKSVIEVR--DGLTFLDL----------IVIQIENLNNKYG-CKVPLV 132
Query: 186 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKA---P 242
+M S T D T K E KY D + F Q P V D + K K P
Sbjct: 133 LMNSFNTHDDTHKIVE--KYTNSNVD-IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYP 189
Query: 243 DGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFI 291
G+G V+ AL +S L+ ++G +Y+ DN L + D T L + I
Sbjct: 190 PGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLI 237
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Query: 126 SGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWY 185
+GG GT +G + PK + + G + L + Q+ + G +
Sbjct: 86 NGGLGTTMGCTGPKSVIEVR--DGLTFLDL----------IVIQIENLNNKYG-CKVPLV 132
Query: 186 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKA---P 242
+M S T D T K E KY D + F Q P V D + K K P
Sbjct: 133 LMNSFNTHDDTHKIVE--KYTNSNVD-IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYP 189
Query: 243 DGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFI 291
G+G V+ AL +S L+ ++G +Y+ DN L + D T L + I
Sbjct: 190 PGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLI 237
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
pdb|2OEG|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
Length = 505
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 241 APDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSA 297
AP G+G +Y+AL S L+++ +G +Y DN LG IDK V A
Sbjct: 187 APPGHGDIYTALYGSGKLQELVEQGYRYXFVSNGDN----------LGATIDKRVLA 233
>pdb|3G9G|A Chain A, Crystal Structure Of The N-Terminal EfcF-Bar Domain Of
Syp1
Length = 287
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 38 EDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQ 78
E+A WD+ SP +L + E++D R+D + C LR Q
Sbjct: 194 EEARRQWDQQSP----YLFELFETIDYNRLDTLKNCMLRFQ 230
>pdb|1FMJ|A Chain A, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FMJ|B Chain B, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FML|A Chain A, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
pdb|1FML|B Chain B, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
Length = 351
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 39 DAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQGLPVAAIEPVPERSVST 95
D F ++D +E + ++ + E+LD+ R ++ S R +AA+ P +R V T
Sbjct: 107 DGFMIYDPEKQEEYNDILPNPENLDMERYLGLLEYSSRPGSSLLAAVPPTEKRFVKT 163
>pdb|1X8J|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8J|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8K|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8K|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8L|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
pdb|1X8L|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
Length = 351
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 39 DAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQGLPVAAIEPVPERSVST 95
D F ++D +E + ++ + E+LD+ R ++ S R +AA+ P +R V T
Sbjct: 107 DGFMIYDPEKQEEYNDILPNPENLDMERYLGLLEYSSRPGSSLLAAVPPTEKRFVKT 163
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 14 GSVGSIAQSPPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIE 60
GS GS Q+ P Q ++ R + GQ LW E P++ + ++ + E
Sbjct: 1 GSSGSSGQAAPSQVVVIRQERAGQTSVSLLWQE--PEQPNGIILEYE 45
>pdb|3IZR|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 319
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 207 GLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSAL 252
GL+ Q +FFQ IP G + TP ++ K D G SAL
Sbjct: 132 GLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESAL 177
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSG 178
K +L++GG G RLG S K + + + + A + QR+ G
Sbjct: 114 KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYL---AYYLRWAQRV-----------G 159
Query: 179 SAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKD-GRFIMETPYK 237
+ + IMTS DD + + + LE + +QG + C + ++ K
Sbjct: 160 GKEVPFVIMTS---DDTHDRTLQLLRELQLEVPNLHVLKQGQVFCFADSAAHLALDETGK 216
Query: 238 VAKAPDGNGGVYSALKSSKLLEDM 261
+ + P G+G V+S + ++ + D+
Sbjct: 217 LLRKPHGHGDVHSLIYNATVKRDV 240
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSG 178
K +L++GG G RLG S K + + + + A + QR+ G
Sbjct: 114 KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYL---AYYLRWAQRV-----------G 159
Query: 179 SAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFI-METPYK 237
+ + IMTS DD + + + LE + +QG + C + + ++ K
Sbjct: 160 GKEVPFVIMTS---DDTHDRTLQLLRELQLEVPNLHVLKQGQVFCFADSAAHLALDETGK 216
Query: 238 VAKAPDGNGGVYSALKSSKLLEDM 261
+ + P G+G V+S + ++ + D+
Sbjct: 217 LLRKPHGHGDVHSLIYNATVKRDV 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,618,250
Number of Sequences: 62578
Number of extensions: 439226
Number of successful extensions: 1174
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 23
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)