Query 018126
Match_columns 360
No_of_seqs 168 out of 748
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:21:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02435 probable UDP-N-acetyl 100.0 5.4E-95 1.2E-99 735.6 35.0 356 1-360 1-356 (493)
2 PTZ00339 UDP-N-acetylglucosami 100.0 1.5E-82 3.3E-87 645.8 30.9 324 29-359 2-342 (482)
3 KOG2388 UDP-N-acetylglucosamin 100.0 8.9E-80 1.9E-84 611.4 18.9 329 24-360 2-330 (477)
4 PLN02830 UDP-sugar pyrophospho 100.0 1.7E-76 3.6E-81 615.0 33.4 327 21-358 23-373 (615)
5 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1E-71 2.2E-76 544.5 25.7 246 106-359 2-247 (323)
6 cd06424 UGGPase UGGPase cataly 100.0 5E-70 1.1E-74 527.9 22.4 231 120-359 1-243 (315)
7 cd00897 UGPase_euk Eukaryotic 100.0 1.2E-66 2.6E-71 502.4 23.9 220 118-359 2-224 (300)
8 PF01704 UDPGP: UTP--glucose-1 100.0 8.6E-66 1.9E-70 517.1 21.5 270 64-358 2-281 (420)
9 PLN02474 UTP--glucose-1-phosph 100.0 9.6E-65 2.1E-69 512.0 26.3 270 64-359 26-300 (469)
10 COG4284 UDP-glucose pyrophosph 100.0 2.9E-64 6.3E-69 501.6 23.7 311 23-359 13-330 (472)
11 cd04180 UGPase_euk_like Eukary 100.0 1.4E-60 3E-65 455.1 25.5 227 120-359 1-232 (266)
12 KOG2638 UDP-glucose pyrophosph 100.0 2.6E-45 5.7E-50 357.6 23.8 267 63-357 53-326 (498)
13 TIGR02092 glgD glucose-1-phosp 99.0 7.5E-09 1.6E-13 102.8 13.8 142 118-303 1-150 (369)
14 PRK15480 glucose-1-phosphate t 99.0 3.7E-08 7.9E-13 95.7 17.9 158 119-331 3-163 (292)
15 TIGR01207 rmlA glucose-1-phosp 98.9 6E-08 1.3E-12 93.9 17.0 154 122-330 2-158 (286)
16 COG1208 GCD1 Nucleoside-diphos 98.9 2.8E-08 6E-13 99.1 14.2 157 120-332 2-161 (358)
17 PRK05293 glgC glucose-1-phosph 98.9 8.2E-08 1.8E-12 95.6 17.0 172 118-332 2-180 (380)
18 cd04197 eIF-2B_epsilon_N The N 98.9 1.1E-07 2.4E-12 87.5 16.6 187 122-359 3-213 (217)
19 TIGR01105 galF UTP-glucose-1-p 98.9 5.8E-08 1.3E-12 94.5 15.0 182 119-359 3-218 (297)
20 PRK00844 glgC glucose-1-phosph 98.8 1.2E-07 2.7E-12 95.7 17.5 171 118-332 4-180 (407)
21 cd06422 NTP_transferase_like_1 98.7 5E-07 1.1E-11 83.0 15.9 152 122-330 2-158 (221)
22 cd04189 G1P_TT_long G1P_TT_lon 98.7 8.3E-07 1.8E-11 82.1 16.5 153 120-330 1-156 (236)
23 PF00483 NTP_transferase: Nucl 98.7 2.8E-07 6.1E-12 85.7 12.9 159 122-333 2-167 (248)
24 cd02538 G1P_TT_short G1P_TT_sh 98.7 3.1E-07 6.8E-12 85.6 12.8 155 121-330 2-159 (240)
25 PRK10122 GalU regulator GalF; 98.7 6.7E-07 1.4E-11 87.0 15.3 161 119-332 3-199 (297)
26 PLN02241 glucose-1-phosphate a 98.7 4.9E-07 1.1E-11 92.3 14.9 179 119-333 3-186 (436)
27 cd06428 M1P_guanylylT_A_like_N 98.7 1.5E-06 3.3E-11 82.0 17.1 158 122-330 1-165 (257)
28 cd06425 M1P_guanylylT_B_like_N 98.6 8.8E-07 1.9E-11 82.2 14.9 157 122-332 3-163 (233)
29 PRK02862 glgC glucose-1-phosph 98.6 2.2E-06 4.9E-11 87.3 18.3 171 119-332 3-179 (429)
30 PRK00725 glgC glucose-1-phosph 98.6 1.5E-06 3.2E-11 88.5 16.8 167 119-330 15-190 (425)
31 cd02540 GT2_GlmU_N_bac N-termi 98.6 2.7E-06 5.8E-11 78.1 16.7 144 122-322 1-145 (229)
32 TIGR02623 G1P_cyt_trans glucos 98.6 2.1E-06 4.5E-11 81.4 16.2 170 122-330 2-174 (254)
33 cd04181 NTP_transferase NTP_tr 98.6 2.1E-06 4.5E-11 77.9 14.8 152 122-330 1-155 (217)
34 COG1209 RfbA dTDP-glucose pyro 98.6 1.4E-06 3E-11 83.2 13.8 158 122-333 3-164 (286)
35 PRK14356 glmU bifunctional N-a 98.6 2E-06 4.3E-11 87.7 16.0 155 119-332 5-161 (456)
36 TIGR01208 rmlA_long glucose-1- 98.5 3.8E-06 8.3E-11 82.9 17.4 142 122-316 2-146 (353)
37 PRK14358 glmU bifunctional N-a 98.5 4E-06 8.7E-11 86.7 17.7 153 119-328 7-161 (481)
38 KOG1322 GDP-mannose pyrophosph 98.5 3.3E-06 7.1E-11 82.3 15.5 168 118-337 8-179 (371)
39 PRK14359 glmU bifunctional N-a 98.5 3.4E-06 7.4E-11 85.2 16.5 149 119-329 2-151 (430)
40 COG1207 GlmU N-acetylglucosami 98.5 2.9E-06 6.2E-11 85.3 15.5 175 119-350 2-180 (460)
41 cd06426 NTP_transferase_like_2 98.5 3.9E-06 8.5E-11 76.7 15.4 150 122-330 1-153 (220)
42 cd06915 NTP_transferase_WcbM_l 98.5 5.4E-06 1.2E-10 75.3 16.1 152 122-330 1-155 (223)
43 cd02524 G1P_cytidylyltransfera 98.5 4.3E-06 9.3E-11 78.8 15.7 164 122-330 1-175 (253)
44 PRK14352 glmU bifunctional N-a 98.5 7E-06 1.5E-10 84.7 17.5 160 119-332 4-165 (482)
45 cd02508 ADP_Glucose_PP ADP-glu 98.5 4.4E-06 9.5E-11 75.9 14.2 139 122-301 1-145 (200)
46 TIGR01099 galU UTP-glucose-1-p 98.4 6.4E-06 1.4E-10 77.6 14.7 161 121-316 2-171 (260)
47 PRK14355 glmU bifunctional N-a 98.4 1.3E-05 2.9E-10 82.0 17.5 154 119-330 3-157 (459)
48 cd02509 GDP-M1P_Guanylyltransf 98.4 1.7E-05 3.8E-10 76.1 17.1 163 121-334 2-176 (274)
49 PRK14357 glmU bifunctional N-a 98.4 9.9E-06 2.2E-10 82.4 15.8 150 121-331 2-152 (448)
50 PRK14360 glmU bifunctional N-a 98.4 1.8E-05 4E-10 80.4 17.2 156 120-331 2-159 (450)
51 TIGR02091 glgC glucose-1-phosp 98.3 9.9E-06 2.1E-10 80.1 14.4 165 122-331 1-173 (361)
52 cd04198 eIF-2B_gamma_N The N-t 98.3 3E-05 6.4E-10 71.4 15.7 133 122-304 3-138 (214)
53 cd02523 PC_cytidylyltransferas 98.3 1.9E-05 4.2E-10 72.8 14.5 123 122-303 1-126 (229)
54 PRK13389 UTP--glucose-1-phosph 98.3 2.2E-05 4.8E-10 76.6 15.4 163 120-317 9-184 (302)
55 PRK14353 glmU bifunctional N-a 98.2 4.4E-05 9.5E-10 77.6 16.5 142 118-316 4-148 (446)
56 cd02507 eIF-2B_gamma_N_like Th 98.2 3E-05 6.6E-10 71.5 13.9 164 122-334 3-180 (216)
57 cd02541 UGPase_prokaryotic Pro 98.2 2.1E-05 4.7E-10 74.4 12.3 160 121-317 2-172 (267)
58 PRK14354 glmU bifunctional N-a 98.1 4.8E-05 1E-09 77.6 14.8 153 119-329 2-156 (458)
59 cd02517 CMP-KDO-Synthetase CMP 98.1 8.8E-05 1.9E-09 68.9 14.8 129 119-305 1-131 (239)
60 PRK05450 3-deoxy-manno-octulos 98.1 5E-05 1.1E-09 70.8 13.1 152 119-332 2-159 (245)
61 TIGR01173 glmU UDP-N-acetylglu 98.1 0.00015 3.1E-09 73.6 17.1 62 121-202 2-63 (451)
62 PRK09451 glmU bifunctional N-a 98.1 0.00011 2.3E-09 75.3 15.3 152 119-331 5-158 (456)
63 KOG1460 GDP-mannose pyrophosph 98.0 5.8E-05 1.2E-09 73.0 11.3 165 119-336 2-175 (407)
64 TIGR01479 GMP_PMI mannose-1-ph 98.0 0.00025 5.4E-09 73.4 16.5 143 122-317 3-158 (468)
65 PF12804 NTP_transf_3: MobA-li 97.9 0.00028 6E-09 61.3 12.7 36 122-162 1-36 (160)
66 cd04182 GT_2_like_f GT_2_like_ 97.9 9.9E-05 2.1E-09 65.1 9.8 38 120-162 1-38 (186)
67 PRK13385 2-C-methyl-D-erythrit 97.8 0.00022 4.8E-09 66.2 11.4 66 119-202 2-67 (230)
68 COG1213 Predicted sugar nucleo 97.8 4.7E-05 1E-09 71.4 6.7 67 120-205 4-70 (239)
69 cd04183 GT2_BcE_like GT2_BcbE_ 97.8 0.00056 1.2E-08 63.1 13.8 37 122-161 1-40 (231)
70 PLN02917 CMP-KDO synthetase 97.6 0.0018 3.9E-08 63.0 15.5 112 119-291 47-158 (293)
71 TIGR00454 conserved hypothetic 97.6 0.00012 2.7E-09 66.3 6.3 61 121-202 2-62 (183)
72 PF01128 IspD: 2-C-methyl-D-er 97.6 0.00016 3.5E-09 67.7 6.6 65 120-202 1-65 (221)
73 COG0746 MobA Molybdopterin-gua 97.5 0.0012 2.5E-08 60.6 11.4 107 119-295 4-113 (192)
74 COG0448 GlgC ADP-glucose pyrop 97.5 0.0012 2.5E-08 66.4 12.1 174 118-334 4-184 (393)
75 cd02516 CDP-ME_synthetase CDP- 97.5 0.0011 2.4E-08 60.5 11.1 39 120-161 1-39 (218)
76 cd02513 CMP-NeuAc_Synthase CMP 97.5 0.003 6.4E-08 57.6 13.9 135 119-305 1-138 (223)
77 PRK13368 3-deoxy-manno-octulos 97.5 0.0021 4.6E-08 59.6 13.0 102 119-280 2-103 (238)
78 PLN02728 2-C-methyl-D-erythrit 97.4 0.00042 9.1E-09 66.1 6.9 42 118-162 23-64 (252)
79 PRK14489 putative bifunctional 97.3 0.0041 9E-08 62.3 13.3 39 119-161 5-43 (366)
80 cd02503 MobA MobA catalyzes th 97.3 0.0019 4.1E-08 57.2 9.7 37 121-162 2-38 (181)
81 PRK09382 ispDF bifunctional 2- 97.3 0.0084 1.8E-07 60.5 15.2 40 119-161 5-44 (378)
82 TIGR03202 pucB xanthine dehydr 97.2 0.0042 9E-08 55.8 11.2 36 121-161 2-37 (190)
83 COG2266 GTP:adenosylcobinamide 97.1 0.00091 2E-08 60.2 5.7 60 121-202 2-61 (177)
84 PRK00560 molybdopterin-guanine 97.1 0.00067 1.4E-08 61.9 4.6 39 118-161 7-46 (196)
85 TIGR00453 ispD 2-C-methyl-D-er 97.1 0.001 2.2E-08 60.9 5.7 38 121-161 1-38 (217)
86 TIGR03310 matur_ygfJ molybdenu 97.0 0.0012 2.6E-08 58.6 5.4 35 122-161 2-36 (188)
87 TIGR00466 kdsB 3-deoxy-D-manno 96.9 0.037 8.1E-07 52.0 15.2 126 122-308 2-131 (238)
88 PRK00155 ispD 2-C-methyl-D-ery 96.9 0.0011 2.3E-08 61.3 4.1 40 119-161 3-42 (227)
89 PRK00317 mobA molybdopterin-gu 96.8 0.0015 3.2E-08 58.9 4.3 39 119-161 3-41 (193)
90 cd02518 GT2_SpsF SpsF is a gly 96.8 0.027 5.9E-07 52.1 12.9 34 122-161 2-35 (233)
91 TIGR02665 molyb_mobA molybdopt 96.7 0.0014 3.1E-08 58.3 3.9 38 120-161 1-38 (186)
92 PRK02726 molybdopterin-guanine 96.7 0.0016 3.4E-08 59.6 4.0 38 119-161 7-44 (200)
93 COG1211 IspD 4-diphosphocytidy 96.6 0.005 1.1E-07 58.1 6.8 66 118-201 3-68 (230)
94 PRK14500 putative bifunctional 96.5 0.0025 5.4E-08 63.6 4.4 40 117-161 158-197 (346)
95 PRK14490 putative bifunctional 96.5 0.0048 1E-07 61.8 6.3 39 118-161 173-211 (369)
96 COG0836 {ManC} Mannose-1-phosp 96.5 0.076 1.6E-06 52.3 14.1 183 120-352 2-198 (333)
97 PRK15460 cpsB mannose-1-phosph 96.0 0.27 5.8E-06 51.3 16.3 180 119-351 5-204 (478)
98 COG4750 LicC CTP:phosphocholin 95.0 0.035 7.5E-07 51.1 4.7 60 122-202 3-65 (231)
99 COG1210 GalU UDP-glucose pyrop 94.6 0.052 1.1E-06 52.4 5.1 167 122-332 7-193 (291)
100 TIGR03584 PseF pseudaminic aci 94.2 1 2.2E-05 41.9 12.8 132 122-305 2-135 (222)
101 COG2068 Uncharacterized MobA-r 91.1 0.29 6.4E-06 45.2 4.3 40 117-161 3-42 (199)
102 PF14134 DUF4301: Domain of un 85.9 7.5 0.00016 40.7 10.8 66 205-280 229-297 (513)
103 COG1212 KdsB CMP-2-keto-3-deox 82.2 3.8 8.3E-05 38.8 6.3 95 119-227 3-108 (247)
104 PF14969 DUF4508: Domain of un 71.0 4.3 9.2E-05 33.4 2.9 37 37-73 59-96 (98)
105 PF02348 CTP_transf_3: Cytidyl 66.3 23 0.0005 31.9 7.1 92 121-226 1-104 (217)
106 KOG1462 Translation initiation 65.8 6 0.00013 40.2 3.4 71 119-210 9-82 (433)
107 COG1861 SpsF Spore coat polysa 51.9 30 0.00066 32.8 5.2 66 118-204 2-68 (241)
108 PF13106 DUF3961: Domain of un 47.7 11 0.00023 26.0 1.2 15 203-217 4-21 (40)
109 PF09655 Nitr_red_assoc: Conse 38.3 94 0.002 27.4 5.9 27 31-57 22-48 (144)
110 PRK10834 vancomycin high tempe 36.6 15 0.00033 35.0 0.8 85 109-209 71-163 (239)
111 TIGR02664 nitr_red_assoc conse 34.4 1E+02 0.0022 27.2 5.4 19 40-58 31-49 (145)
112 TIGR03092 SASP_sspI small, aci 33.6 25 0.00055 26.7 1.4 39 23-61 13-62 (65)
113 PF11460 DUF3007: Protein of u 31.0 40 0.00087 28.1 2.3 27 34-60 77-103 (104)
114 TIGR02180 GRX_euk Glutaredoxin 29.9 2E+02 0.0043 21.2 6.0 56 182-261 28-83 (84)
115 PF14098 SSPI: Small, acid-sol 27.8 68 0.0015 24.5 2.9 39 23-61 14-63 (65)
116 PRK02955 small acid-soluble sp 26.3 73 0.0016 24.5 2.8 38 24-61 17-65 (68)
117 COG1535 EntB Isochorismate hyd 25.5 4.5E+02 0.0098 24.4 8.2 99 149-274 49-151 (218)
118 COG0641 AslB Arylsulfatase reg 23.4 2E+02 0.0042 29.3 6.2 119 134-278 120-240 (378)
119 PF13945 NST1: Salt tolerance 22.7 39 0.00084 31.1 0.9 32 37-72 104-135 (190)
120 KOG0734 AAA+-type ATPase conta 22.3 88 0.0019 33.7 3.4 56 129-203 328-392 (752)
121 CHL00195 ycf46 Ycf46; Provisio 21.6 9.6E+02 0.021 25.2 13.3 53 20-76 139-191 (489)
No 1
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=5.4e-95 Score=735.57 Aligned_cols=356 Identities=84% Similarity=1.338 Sum_probs=328.1
Q ss_pred CCCCceeeeccCCCCCCCCCCCCCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 018126 1 MREPTVVGTESNGGSVGSIAQSPPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQGL 80 (360)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gQ~Hl~~~~~~l~~~ek~~L~~ql~~iD~~~~~~~~~~~~~~~~~ 80 (360)
|.||.|-. | .+...+-|+. ...++|+++|.++||+|||++|++|+++||++|++||+++|++++.+++++++.+.+.
T Consensus 1 ~~~~~~~~-~-~~~~~~~~~~-~~~~~l~~~l~~~gQ~HLl~~w~~ls~~e~~~L~~qL~~iD~~~l~~~~~~~~~~~~~ 77 (493)
T PLN02435 1 MKEPVVEN-E-AVTAPGPWGA-APPQALLERLKDYGQEDAFALWDELSPEERDLLVRDIESLDLPRIDRIIRCSLRSQGL 77 (493)
T ss_pred CCcccccc-c-cCCCCCCCCc-ccHHHHHHHHHHcChHHHHHhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Confidence 78886643 2 3445577875 4567899999999999999999999999999999999999999999999888765556
Q ss_pred CCCCcccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHH
Q 018126 81 PVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERI 160 (360)
Q Consensus 81 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i 160 (360)
+++.++|+|++.+.++++.+.+..++|+++|+++|++||||||+||||||||||+++||||+||++|++|||||+++|||
T Consensus 78 ~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I 157 (493)
T PLN02435 78 PVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERI 157 (493)
T ss_pred chhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHH
Confidence 78889999988888888776677788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccc
Q 018126 161 LCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAK 240 (360)
Q Consensus 161 ~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~ 240 (360)
+++|+++.++.+. +.+++++||||||||+.||++|++||++|+|||+++++|+||+|+++||++.+|+++|++|++++|
T Consensus 158 ~~lq~la~~~~~~-~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~ 236 (493)
T PLN02435 158 LCVQRLAAQASSE-GPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAK 236 (493)
T ss_pred HHHHHHHHhhccc-ccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCccccc
Confidence 9999999776532 112578899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccC
Q 018126 241 APDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKG 320 (360)
Q Consensus 241 ~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~ 320 (360)
+|+||||+|.+|.++|+|++|+++|++|+||+||||+|++++||.|||||+.++++|++||++|++|+|+||+||+.+.+
T Consensus 237 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~ 316 (493)
T PLN02435 237 APDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG 316 (493)
T ss_pred CCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997668
Q ss_pred CCeEEEEecCCChHHHhhcccCCCceeeeccceeeeeecC
Q 018126 321 GPLTVVEYSELDPSLASAINQETGRLRFCWSNVCTFASTS 360 (360)
Q Consensus 321 g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gni~~h~f~~ 360 (360)
|+++|||||||++++++++++++|+|+|++||||||+||.
T Consensus 317 g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~ 356 (493)
T PLN02435 317 GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTL 356 (493)
T ss_pred CCEEEEEeccCCHHHHhccCccccccccchhhHHHhhccH
Confidence 9999999999999999988876799999999999999983
No 2
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=1.5e-82 Score=645.78 Aligned_cols=324 Identities=33% Similarity=0.557 Sum_probs=296.8
Q ss_pred HHHHHHCCCchhccccccCCHHHHHHHHHHH-h---cCChHHHHHHHHHHHhcC---C--------CCCCCcccCCCCCc
Q 018126 29 LERLKDYGQEDAFALWDELSPDERDHLVKDI-E---SLDLPRVDRIIRCSLRSQ---G--------LPVAAIEPVPERSV 93 (360)
Q Consensus 29 ~~~l~~~gQ~Hl~~~~~~l~~~ek~~L~~ql-~---~iD~~~~~~~~~~~~~~~---~--------~~~~~~~p~p~~~~ 93 (360)
+++|.++||+|||+||++|+++||++|.+|| + .+|++.++.+++.+.... . ...+.++|+|...+
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l~~~e~~~l~~ql~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 81 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRRSEGEFTPLATQILSSLTNVDFKHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEPPNNNTF 81 (482)
T ss_pred hhhhhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHhhhhhcccccccccccccccccCCCCcccc
Confidence 5789999999999999999999999999999 5 899999999988765321 1 12356899998777
Q ss_pred cccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcC
Q 018126 94 STVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSE 173 (360)
Q Consensus 94 ~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~ 173 (360)
.++.+ .+++..+|+++|+++|++||||+|+||||+|||||++.||||+||+++++|||||++++||++++.++.++++.
T Consensus 82 ~~~~~-~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~ 160 (482)
T PTZ00339 82 IDIYE-KEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGG 160 (482)
T ss_pred ccccc-CHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhccccc
Confidence 77666 45677899999999999999999999999999999999999999999999999999999999999988655431
Q ss_pred CCCCCCCceeEEEecCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCceeeeec-CCcccccCCCcccccCCCChhHhHHH
Q 018126 174 GGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK-DGRFIMETPYKVAKAPDGNGGVYSAL 252 (360)
Q Consensus 174 ~~~~~~~~ipl~IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~-~gki~l~~~~~i~~~P~GhGgi~~aL 252 (360)
..++.||||||||++|++.|++||++|+|||+++++|+||.|+++||++. +|+++|+++++++|+|+||||+|.+|
T Consensus 161 ---~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL 237 (482)
T PTZ00339 161 ---GDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKAL 237 (482)
T ss_pred ---ccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHH
Confidence 13567999999999999999999999999999999999999999999985 59999999999999999999999999
Q ss_pred hhCcHHHHHHHCCCeEEEEEcCCCccccccCHHHHHHHHHcCC-ceEEEEeecCCCCcccceEEEEccCCCeEEEEecCC
Q 018126 253 KSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGV-SAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSEL 331 (360)
Q Consensus 253 ~~sg~l~~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~-~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel 331 (360)
.++|+|++|.++|++|+||+||||+|++++||.|||||+++++ +|+.||+ |+.|+|+||+||+. +|+++||||+||
T Consensus 238 ~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~--~g~~~vvEYsEi 314 (482)
T PTZ00339 238 AKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLK--DYEWQVVEYTEI 314 (482)
T ss_pred HHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEe--CCcccEEEEecc
Confidence 9999999999999999999999999999999999999999999 9999999 78899999999997 789999999999
Q ss_pred ChHHHhhcccCCCceeeeccceeeeeec
Q 018126 332 DPSLASAINQETGRLRFCWSNVCTFAST 359 (360)
Q Consensus 332 ~~~~~~~~~~~~g~l~f~~gni~~h~f~ 359 (360)
++++++.+++.+|.|+|++||||||+|+
T Consensus 315 ~~~~~~~~~~~~g~l~f~~gnI~~h~fs 342 (482)
T PTZ00339 315 NERILNNDELLTGELAFNYGNICSHIFS 342 (482)
T ss_pred ChhhhhcccccCCeecccccceEEEEEE
Confidence 9999988776679999999999999997
No 3
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=8.9e-80 Score=611.37 Aligned_cols=329 Identities=52% Similarity=0.863 Sum_probs=305.5
Q ss_pred CHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCcccCCCCCccccccCChHH
Q 018126 24 PPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQGLPVAAIEPVPERSVSTVEERTMDE 103 (360)
Q Consensus 24 ~~~~l~~~l~~~gQ~Hl~~~~~~l~~~ek~~L~~ql~~iD~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~ 103 (360)
+..++...|.++||+|||++|++|++++|..|++|++.+|++++..+++...+....+...++|+|+..+..+.....++
T Consensus 2 ~~~~~~~~l~~~Gq~~l~~~w~eL~~~~~~~l~~~ie~l~l~~~~~~~~~~a~~~~~~~~~~~p~p~~~~~~~~~~~~~d 81 (477)
T KOG2388|consen 2 DRTKLHLILLEAGQSHLFTQWPELSEADKESLLDQIEVLNLSRIHGLQRISANEDSKPVGEIRPVPESKSWPLKERGLDD 81 (477)
T ss_pred chhHHHHHHHHcChHhHhhhchhcCHHHHHHHHHHHHhhcccccchhhhcChhhccCcccccCCCCccccceecccCchh
Confidence 45678899999999999999999999999999999999999999988873333333456778998887767777666677
Q ss_pred HHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCcee
Q 018126 104 RERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIH 183 (360)
Q Consensus 104 ~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ip 183 (360)
.++|+..|+++|++|++|++++|||||||||+++|||++|+|+++++||||+++|+|+++|.+|..+.. .++.||
T Consensus 82 ~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~-----~~~~I~ 156 (477)
T KOG2388|consen 82 VDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVS-----DGVDIP 156 (477)
T ss_pred hhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhc-----cCCceE
Confidence 777999999999999999999999999999999999999999999999999999999999999887665 357899
Q ss_pred EEEecCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHH
Q 018126 184 WYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT 263 (360)
Q Consensus 184 l~IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~ 263 (360)
||||||+.|++.|++||+.|+|||++++||+||+|+++||++.+|+++|+.+.+++++|+||||+|+|+.++ |.+|..
T Consensus 157 w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~ 234 (477)
T KOG2388|consen 157 WYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAA 234 (477)
T ss_pred EEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CCCeEEEEEcCCCccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCCChHHHhhcccCC
Q 018126 264 RGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQET 343 (360)
Q Consensus 264 ~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~ 343 (360)
||++|+|+|||||+|++++||.||||+++++++|++|+|+|.+|.|.||++|+.++ |.++||||||++++++..+.+++
T Consensus 235 rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~-G~~~vvEYsEi~~~~a~~~~~d~ 313 (477)
T KOG2388|consen 235 RGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQ-GTPLVVEYSELDAELAKAKAPDG 313 (477)
T ss_pred hcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEecCC-CceeEEEecccCHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999843 89999999999999999888766
Q ss_pred CceeeeccceeeeeecC
Q 018126 344 GRLRFCWSNVCTFASTS 360 (360)
Q Consensus 344 g~l~f~~gni~~h~f~~ 360 (360)
|+|.|++||||||+|+.
T Consensus 314 g~l~~~agnI~nh~ft~ 330 (477)
T KOG2388|consen 314 GRLLFNAGNICNHFFTL 330 (477)
T ss_pred CccccCCccHHHHHHhh
Confidence 99999999999999974
No 4
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=1.7e-76 Score=615.00 Aligned_cols=327 Identities=31% Similarity=0.465 Sum_probs=285.5
Q ss_pred CCCCHHHHHHHHHHCCCchhccccccC--CHHHHHHHHHHHhcCChHH---HHHH---HHHHHh-c-C-CCCCCCccc-C
Q 018126 21 QSPPPQALLERLKDYGQEDAFALWDEL--SPDERDHLVKDIESLDLPR---VDRI---IRCSLR-S-Q-GLPVAAIEP-V 88 (360)
Q Consensus 21 ~~~~~~~l~~~l~~~gQ~Hl~~~~~~l--~~~ek~~L~~ql~~iD~~~---~~~~---~~~~~~-~-~-~~~~~~~~p-~ 88 (360)
-++..++|+++|.++||+|||++|+++ +++||++|++||..+|..+ +..+ +.+++. + . ..+++.++| +
T Consensus 23 ~~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~~~l~~s~~~~~~~~~i~P~v 102 (615)
T PLN02830 23 LSPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNAKELLADSKEGVNPFEGWTPSV 102 (615)
T ss_pred CChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccCCCchhhcccCC
Confidence 456778899999999999999999998 8999999999999999884 3222 222333 2 2 357889999 6
Q ss_pred CCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHH
Q 018126 89 PERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAA 168 (360)
Q Consensus 89 p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~ 168 (360)
|.+.+.++++ ....+|++.|+++| ||||||+||||||||||+++|||++|++++++|||||+++++|+++|++|.
T Consensus 103 p~~~~~~~~~---~~~~~~~~~Gl~~l--~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~ 177 (615)
T PLN02830 103 PEGEVLEYGS---EEFVELEEAGLREA--GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAK 177 (615)
T ss_pred Cccccccccc---hhhhHHHHHHHHHh--CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHH
Confidence 8776666664 34567899999999 699999999999999999999999999999999999999999999999987
Q ss_pred hhhcCCCCCCCCceeEEEecCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCceeeeec-CCcccccC--CCcccccCCCC
Q 018126 169 QVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK-DGRFIMET--PYKVAKAPDGN 245 (360)
Q Consensus 169 ~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~-~gki~l~~--~~~i~~~P~Gh 245 (360)
+... ++++.||||||||+.||++|++||++|+|||++++||+||+|+++||++. +|+++|++ +++++|+|+||
T Consensus 178 ~~~~----~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~Gh 253 (615)
T PLN02830 178 KRKA----KKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGH 253 (615)
T ss_pred Hhcc----cCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCc
Confidence 6543 25788999999999999999999999999999999999999999999985 59999988 88999999999
Q ss_pred hhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEE-ccCCC--
Q 018126 246 GGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR-GKGGP-- 322 (360)
Q Consensus 246 Ggi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~-~~~g~-- 322 (360)
||+|.+|+++|+|++|+++|++|++|+||||+|++++||.|||||+.++++|++||++| .|.|++|+||+. +.||+
T Consensus 254 Gdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K-~~~E~vGvi~~~~~~dG~~l 332 (615)
T PLN02830 254 GDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPR-KAKEAIGAIAKLTHKDGREM 332 (615)
T ss_pred cHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEEC-CCCcccceEEEEecCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999 689999999985 23676
Q ss_pred eEEEEecCCChHHHhhcccCCCceee------eccceeeeee
Q 018126 323 LTVVEYSELDPSLASAINQETGRLRF------CWSNVCTFAS 358 (360)
Q Consensus 323 ~~vvEYsel~~~~~~~~~~~~g~l~f------~~gni~~h~f 358 (360)
+++|||+|++++++.+.++ +|++.+ .-|||-|-++
T Consensus 333 ~~vVEYse~~~ll~~a~~p-~g~l~~~~~~s~FPgNtN~L~v 373 (615)
T PLN02830 333 VINVEYNQLDPLLRATGHP-DGDVNDETGYSPFPGNINQLIL 373 (615)
T ss_pred eEEEeecccCHHHHhccCC-CcccccccccccCCCCceeeEe
Confidence 6889999999999887665 455542 2256666554
No 5
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1e-71 Score=544.47 Aligned_cols=246 Identities=55% Similarity=0.918 Sum_probs=236.6
Q ss_pred HHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEE
Q 018126 106 RWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWY 185 (360)
Q Consensus 106 ~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~ 185 (360)
+|+++|+++|++|++|+|+||||+|||||+++||+++||+++++|||||+++++|++++.++.+..+ ..+.|||+
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~-----~~~~ip~~ 76 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASG-----KKVPIPWY 76 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccC-----CCCCceEE
Confidence 5889999999999999999999999999999999999999999999999999999999988765442 35779999
Q ss_pred EecCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCC
Q 018126 186 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG 265 (360)
Q Consensus 186 IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~G 265 (360)
||||++||+.|++||++|+|||+++++|+||.|+++||++.+|+++|+++++++|+|+||||+|.+|.++|+|++|+++|
T Consensus 77 imtS~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G 156 (323)
T cd04193 77 IMTSEATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRG 156 (323)
T ss_pred EEcChhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCCChHHHhhcccCCCc
Q 018126 266 IKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGR 345 (360)
Q Consensus 266 i~yi~v~~vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~ 345 (360)
++|++|+||||+|++++||.|||||++++++|++||++|+.|+|+||++|++ ||+++||||+|+|++.+++++ ++|+
T Consensus 157 ~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~--~g~~~vvEysel~~~~~~~~~-~~g~ 233 (323)
T cd04193 157 IKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV--DGKPQVVEYSEISDELAEKRD-ADGE 233 (323)
T ss_pred CEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE--CCeEEEEEeecCCHHHHhccC-cCCc
Confidence 9999999999999999999999999999999999999999999999999997 899999999999999999876 4899
Q ss_pred eeeeccceeeeeec
Q 018126 346 LRFCWSNVCTFAST 359 (360)
Q Consensus 346 l~f~~gni~~h~f~ 359 (360)
|.|++||||+|+|+
T Consensus 234 l~f~~~ni~~~~fs 247 (323)
T cd04193 234 LQYNAGNIANHFFS 247 (323)
T ss_pred EecccchHhhheeC
Confidence 99999999999997
No 6
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=5e-70 Score=527.86 Aligned_cols=231 Identities=29% Similarity=0.414 Sum_probs=214.0
Q ss_pred EEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHH
Q 018126 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (360)
Q Consensus 120 vavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (360)
+|+|+||||||||||+++|||++||++++++||||++++||+++|++|.+. +++.||||||||+.||++|++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~-------~~~~IPl~IMTS~~Th~~T~~~ 73 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKG-------EKMEIPFVIMTSDDTHSKTLKL 73 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhcc-------CCCceeEEEECCCchhHHHHHH
Confidence 589999999999999999999999999999999999999999999988641 4678999999999999999999
Q ss_pred HhhcCCCCCCCCcEEEEEcCceeeee-cCCcc--cccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCC
Q 018126 200 FEGHKYFGLESDQVTFFQQGTIPCVS-KDGRF--IMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (360)
Q Consensus 200 f~~~~~FGl~~~~v~~f~Q~~~P~~~-~~gki--~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN 276 (360)
|++|+|||+++++|+||+|+++||++ .+|++ .++++++++|+|+||||+|.+|+++|+||+|+++|++|++|+||||
T Consensus 74 fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN 153 (315)
T cd06424 74 LEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTN 153 (315)
T ss_pred HHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecch
Confidence 99999999999999999999999997 89999 5789999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEc-cCCCeEE--EEecCCChHHHhhcccCCC--c----ee
Q 018126 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG-KGGPLTV--VEYSELDPSLASAINQETG--R----LR 347 (360)
Q Consensus 277 ~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~-~~g~~~v--vEYsel~~~~~~~~~~~~g--~----l~ 347 (360)
+|++++||.|+|||+.++++|++|||+ +.|+|+||++|+.+ .||+++| ||||||++++++..++ +| . +.
T Consensus 154 ~L~~~adP~fiG~~~~~~~d~~~k~v~-~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~-~g~~~~~~~~s 231 (315)
T cd06424 154 ALAFKAIPAVLGVSATKSLDMNSLTVP-RKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKD-DGDVDDKTGFS 231 (315)
T ss_pred hhhhccChhhEEEEecCCCceEeEEEe-CCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCC-CCCcccccccc
Confidence 999999999999999999999999998 57899999999853 4689988 9999999999886543 22 2 45
Q ss_pred eeccceeeeeec
Q 018126 348 FCWSNVCTFAST 359 (360)
Q Consensus 348 f~~gni~~h~f~ 359 (360)
+.+|||++|+|+
T Consensus 232 ~f~gNi~~~~f~ 243 (315)
T cd06424 232 PFPGNINQLVFS 243 (315)
T ss_pred cCCCeeeeEEEe
Confidence 559999999997
No 7
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=1.2e-66 Score=502.39 Aligned_cols=220 Identities=23% Similarity=0.351 Sum_probs=208.7
Q ss_pred CCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
+|||||+||||||||||+++|||++|| ++++||||++++||+++++. +++.||||||||+.||++|+
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~~~-----------~~~~iPl~iMtS~~T~~~T~ 68 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLNKT-----------YGVDVPLVLMNSFNTDEDTK 68 (300)
T ss_pred CcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCcchHHHH
Confidence 599999999999999999999999988 69999999999999998875 46789999999999999999
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCceeeeecCCccccc---CCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcC
Q 018126 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIME---TPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (360)
Q Consensus 198 ~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~---~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~v 274 (360)
+||++|++ ++++|++|+|+++||++.+|+++++ ++++++|+|+||||+|.+|.++|+|++|+++|++|++|+||
T Consensus 69 ~~l~~~~~---~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nv 145 (300)
T cd00897 69 KILKKYAG---VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNI 145 (300)
T ss_pred HHHHHcCC---CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEec
Confidence 99999775 7789999999999999999999997 78899999999999999999999999999999999999999
Q ss_pred CCccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCCChHHHhhcccCCCceeeecccee
Q 018126 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (360)
Q Consensus 275 DN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gni~ 354 (360)
|| |++++||.|+|||+.+++++++||++|+.|+|+||++|++ +|+++||||+|+|++.+++++ |.++|+++|||
T Consensus 146 DN-L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~--~g~~~vvEyse~p~e~~~~~~---~~~~~~~~nt~ 219 (300)
T cd00897 146 DN-LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFK---SIKKFKIFNTN 219 (300)
T ss_pred cc-ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE--CCEEEEEEeccCCHHHHHhhc---CcccceEEEEe
Confidence 99 6999999999999999999999999999999999999997 799999999999999987764 67789999999
Q ss_pred eeeec
Q 018126 355 TFAST 359 (360)
Q Consensus 355 ~h~f~ 359 (360)
||+|+
T Consensus 220 n~~~~ 224 (300)
T cd00897 220 NLWVN 224 (300)
T ss_pred EEEEE
Confidence 99996
No 8
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=8.6e-66 Score=517.08 Aligned_cols=270 Identities=40% Similarity=0.619 Sum_probs=230.1
Q ss_pred hHHHHHHHHHHHhc-C--CCCCCCcccCCCCCccccccCChHHHHH--HHHHhhhhhcCCCEEEEEecCCCccccCCCCC
Q 018126 64 LPRVDRIIRCSLRS-Q--GLPVAAIEPVPERSVSTVEERTMDERER--WWKMGLKAISDGKLAVLLLSGGQGTRLGSSDP 138 (360)
Q Consensus 64 ~~~~~~~~~~~~~~-~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~--~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~p 138 (360)
.+.+.++|++++.+ . ...|+.+.|++++.+.+++++ +. | +.|..+++.||||||+||||||||||+++|
T Consensus 2 ~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~~~~~~~~l-----~~~~~-~~~~~~~~~~kvavl~LaGGlGTrlG~~~p 75 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKSHQIDWDKIMPPPPEEVVDYESL-----KEYEW-DEGLEAIALGKVAVLKLAGGLGTRLGCSGP 75 (420)
T ss_dssp HHHHHHHHHHHHHCCCCCS--GGGEEE-GTGCEEEHHHH-----HHSCH-HHHHHHHHTTCEEEEEEEESBSGCCTESSB
T ss_pred hHHHHHHHHHHHHhcccCCcccccCCCCChhhcCChhHh-----ccccc-ccchhHHhhCCEEEEEEcCcccCccCCCCC
Confidence 35677889988875 2 357888888776666655443 23 3 689999999999999999999999999999
Q ss_pred CCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHHhhcCCCCCCCCcEEEEEc
Q 018126 139 KGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQ 218 (360)
Q Consensus 139 Kg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q 218 (360)
||++|| .+++||||+++++|.+++.. +++.|||+||||+.||++|++||++ |||++.+ |++|+|
T Consensus 76 K~~~~v--~~~~t~ldl~~~qi~~l~~~-----------~~~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q 139 (420)
T PF01704_consen 76 KGLIPV--REGKTFLDLIVEQIEALNKK-----------YGVDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQ 139 (420)
T ss_dssp GGGSEE--ETTEEHHHHHHHHHHHHHHH-----------HTTT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE
T ss_pred Ccceec--CCcccHHHHHHHHHHHHhcc-----------ccccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEee
Confidence 999888 78999999999999987754 3577999999999999999999999 9999987 999999
Q ss_pred CceeeeecCCcccccCCCc-----ccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCccccccCHHHHHHHHHc
Q 018126 219 GTIPCVSKDGRFIMETPYK-----VAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDK 293 (360)
Q Consensus 219 ~~~P~~~~~gki~l~~~~~-----i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~ 293 (360)
+++||++.+|+++++++.+ ..|+|+||||+|.+|.+||+|++|+++|++|+||+|||| |++++||.|||||+++
T Consensus 140 ~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~ 218 (420)
T PF01704_consen 140 SKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEK 218 (420)
T ss_dssp -EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHT
T ss_pred cCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhc
Confidence 9999999999999987652 358899999999999999999999999999999999999 8999999999999999
Q ss_pred CCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCCChHHHhhcccCCCceeeeccceeeeee
Q 018126 294 GVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCTFAS 358 (360)
Q Consensus 294 ~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gni~~h~f 358 (360)
+++|++||++|+.|+|++|++|++ +|+++||||+|+|++..+++++.+|.+.||++||+.++.
T Consensus 219 ~~~~~~evv~Kt~~dek~Gvl~~~--~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~ 281 (420)
T PF01704_consen 219 NADFGMEVVPKTSPDEKGGVLCRY--DGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLD 281 (420)
T ss_dssp T-SEEEEEEE-CSTTTSSEEEEEE--TTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHH
T ss_pred cchhheeeeecCCCCCceeEEEEe--CCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHH
Confidence 999999999999999999999997 799999999999999877777778999999999988763
No 9
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=9.6e-65 Score=512.04 Aligned_cols=270 Identities=20% Similarity=0.252 Sum_probs=236.1
Q ss_pred hHHHHHHHHHHHhcC--CCCCCCcccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCCc
Q 018126 64 LPRVDRIIRCSLRSQ--GLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGC 141 (360)
Q Consensus 64 ~~~~~~~~~~~~~~~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~pKg~ 141 (360)
.+.+.++|++++..+ .++|+.|+|++++.+..+++..+.... .....++| +|+|||+||||||||||+++|||+
T Consensus 26 ~~~f~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~L--~k~avlkLnGGlGTrmG~~~PKs~ 101 (469)
T PLN02474 26 KSGFISLVSRYLSGEAQHIEWSKIQTPTDEVVVPYDKLAPVPED--PEETKKLL--DKLVVLKLNGGLGTTMGCTGPKSV 101 (469)
T ss_pred HHHHHHHHHHHHhCCCCeecHHHccCCchhhCcChhhccccccc--hhHHHHHH--hcEEEEEecCCcccccCCCCCcee
Confidence 345666777776644 368889999888776666655421100 11234467 599999999999999999999999
Q ss_pred eeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCce
Q 018126 142 VNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTI 221 (360)
Q Consensus 142 ~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~ 221 (360)
++ +++++||||++++||+++++. +++.||||||||+.||++|++||++|+||+ .+|++|.|+++
T Consensus 102 i~--v~~~~sfldl~~~qi~~l~~~-----------~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~---~~i~~F~Q~~~ 165 (469)
T PLN02474 102 IE--VRNGLTFLDLIVIQIENLNKK-----------YGCNVPLLLMNSFNTHDDTQKIVEKYTNSN---IEIHTFNQSQY 165 (469)
T ss_pred EE--cCCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCchhHHHHHHHHHcCCCc---cceEEEecCce
Confidence 87 589999999999999988764 467899999999999999999999999875 47999999999
Q ss_pred eeeecCCcccccCCC---cccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCccccccCHHHHHHHHHcCCceE
Q 018126 222 PCVSKDGRFIMETPY---KVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAG 298 (360)
Q Consensus 222 P~~~~~gki~l~~~~---~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~~~~ 298 (360)
||++.+|+++++.+. ..+|+|+||||+|.+|++||+|++|+++|++|+||+|+|| |++++||.|+|||+.++++++
T Consensus 166 P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~lg~~~~~~~e~~ 244 (469)
T PLN02474 166 PRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYC 244 (469)
T ss_pred eeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHHHHHHHhcCCceE
Confidence 999999999998765 4569999999999999999999999999999999999999 599999999999999999999
Q ss_pred EEEeecCCCCcccceEEEEccCCCeEEEEecCCChHHHhhcccCCCceeeeccceeeeeec
Q 018126 299 AKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCTFAST 359 (360)
Q Consensus 299 ~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gni~~h~f~ 359 (360)
+||++|+.|+||+|++|++ +|+++++||+|+|++.+++++ |.++|+++|||||.|+
T Consensus 245 ~ev~~Kt~~d~kgG~l~~~--dgk~~lvEysqvp~e~~~~f~---~~~kf~~fNtnn~w~~ 300 (469)
T PLN02474 245 MEVTPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFK---SIEKFKIFNTNNLWVN 300 (469)
T ss_pred EEEeecCCCCCCccEEEEE--CCEEEEEEEecCCHHHHHhhc---ccccceeeeeeeEEEE
Confidence 9999999999999999987 799999999999999988754 8899999999999996
No 10
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-64 Score=501.64 Aligned_cols=311 Identities=32% Similarity=0.481 Sum_probs=267.7
Q ss_pred CCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCCCcccCCCCCcccccc
Q 018126 23 PPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRS----QGLPVAAIEPVPERSVSTVEE 98 (360)
Q Consensus 23 ~~~~~l~~~l~~~gQ~Hl~~~~~~l~~~ek~~L~~ql~~iD~~~~~~~~~~~~~~----~~~~~~~~~p~p~~~~~~~~~ 98 (360)
.........+.+..|.|++..|..+++.++.+..+++..+| .+..+|++++.+ ....|+.++|+-.+.+..+++
T Consensus 13 ~~f~~~~~~l~~~~~~h~l~~l~~~s~~~~~~~~~~~~~~d--~~f~l~~~~ll~~s~~s~~~~~ki~~~~~d~~~~~~~ 90 (472)
T COG4284 13 FKFNSDAVSLAASQQEHLLDKLKQSSEKQALKSFEKLLLLD--IFFFLFSRYLLNTSKASTQEWDKIRPPNPDDVVDYEK 90 (472)
T ss_pred hhhhcchhhhhHHHHHHHHHHhhhhchHHHHhhhhhhhhhH--HHHHHHHHHHhhcCcccceeecccCCCChhhhccchh
Confidence 45666788899999999999999999855445555544443 344455555542 224567777765555555554
Q ss_pred CChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 018126 99 RTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSG 178 (360)
Q Consensus 99 ~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~ 178 (360)
... +++ |+..+..||+|+|+||||||||||+++|||+++|+ .+|||||+++++|+.++++ +
T Consensus 91 ~~~----~~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~qIk~ln~~-----------~ 151 (472)
T COG4284 91 KIL----EGW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQIKYLNRQ-----------Y 151 (472)
T ss_pred hcc----chh--hhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHHHHHHHHH-----------h
Confidence 321 122 78888889999999999999999999999999996 7999999999999998876 4
Q ss_pred CCceeEEEecCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCcee-eeecCCcccccCCCc-ccccCCCChhHhHHHhhCc
Q 018126 179 SAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIP-CVSKDGRFIMETPYK-VAKAPDGNGGVYSALKSSK 256 (360)
Q Consensus 179 ~~~ipl~IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P-~~~~~gki~l~~~~~-i~~~P~GhGgi~~aL~~sg 256 (360)
+++|||||||| .|++.|..||+.++|||+++++|.||.|+.+| |++..|+.++.+..+ ++|+|+||||+|.+|..||
T Consensus 152 ~~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG 230 (472)
T COG4284 152 NVDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSG 230 (472)
T ss_pred CCCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcc
Confidence 67899999999 99999999999999999999999999999999 667889988766555 9999999999999999999
Q ss_pred HHHHHHHCCCeEEEEEcCCCccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCCChHHH
Q 018126 257 LLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLA 336 (360)
Q Consensus 257 ~l~~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~ 336 (360)
++++|.++|++|++|+|||| |++++||.|+|+++.+++++++|++.|+.|+|+||+++.+ +|+++|+||+|+|++.+
T Consensus 231 ~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~--~g~~rllEysev~~~~~ 307 (472)
T COG4284 231 ILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY--DGKLRLLEYSEVPNEHR 307 (472)
T ss_pred hHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe--CCceEEEEEecCChhHh
Confidence 99999999999999999999 8999999999999999999999999999999999999987 79999999999999999
Q ss_pred hhcccCCCceeeeccc-eeeeeec
Q 018126 337 SAINQETGRLRFCWSN-VCTFAST 359 (360)
Q Consensus 337 ~~~~~~~g~l~f~~gn-i~~h~f~ 359 (360)
.++. ++|.++|.++| ||+|+|+
T Consensus 308 ~~~~-s~~~~~~~n~Nni~l~~~~ 330 (472)
T COG4284 308 EEFT-SDGKLKYFNTNNIWLHLFS 330 (472)
T ss_pred hhhc-cccceeeeccccceeehhH
Confidence 9887 47999999999 9999986
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=1.4e-60 Score=455.12 Aligned_cols=227 Identities=33% Similarity=0.497 Sum_probs=212.8
Q ss_pred EEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHH
Q 018126 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (360)
Q Consensus 120 vavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (360)
||+|+||||+|||||++.||+++||+++++|||||+++++|++++.+++ .++.|||+||||++||+.|++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~---------~~~~Ip~~imts~~t~~~t~~~ 71 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDL---------YSCKIPEQLMNSKYTHEKTQCY 71 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhh---------cCCCCCEEEEcCchhHHHHHHH
Confidence 6899999999999999999999999999999999999999999988763 2466999999999999999999
Q ss_pred HhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCccc
Q 018126 200 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 279 (360)
Q Consensus 200 f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~ 279 (360)
|++|+ ++.++|++|+|+++||++.+|++.++++++++|+|+||||+|.+|..+|+|++|+++|++|++|+|+||+|+
T Consensus 72 l~~~~---~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la 148 (266)
T cd04180 72 FEKIN---QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLV 148 (266)
T ss_pred HHHcC---CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCc
Confidence 99988 567899999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCCChHHHhhcc-----cCCCceeeecccee
Q 018126 280 RVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAIN-----QETGRLRFCWSNVC 354 (360)
Q Consensus 280 ~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~-----~~~g~l~f~~gni~ 354 (360)
+++||.++||++.++++++++|++|+.++|++|++|..+ +|++++|||+|+|+++++++. +.+|.+.|++||||
T Consensus 149 ~v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~-~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 227 (266)
T cd04180 149 KVADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIANI-NGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTN 227 (266)
T ss_pred cccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEec-CCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEE
Confidence 999999999999999999999999999999999999872 399999999999999988642 14689999999999
Q ss_pred eeeec
Q 018126 355 TFAST 359 (360)
Q Consensus 355 ~h~f~ 359 (360)
||+|+
T Consensus 228 ~~~~~ 232 (266)
T cd04180 228 NLINF 232 (266)
T ss_pred EEEEE
Confidence 99997
No 12
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-45 Score=357.62 Aligned_cols=267 Identities=22% Similarity=0.328 Sum_probs=235.7
Q ss_pred ChHHHHHHHHHHHhcC--CCCCCCcccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCC
Q 018126 63 DLPRVDRIIRCSLRSQ--GLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKG 140 (360)
Q Consensus 63 D~~~~~~~~~~~~~~~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~pKg 140 (360)
+++.+..+|++++... ...|+.|+|+|++.+..++++... +.+..+++ |.|++.|+||+||.||+.+||+
T Consensus 53 e~~~F~~Lf~RyL~~~~~~~~wdkI~~p~~d~vv~y~~i~~~------~~~~~~L~--KLavlKLNGGlGttmGc~gPKS 124 (498)
T KOG2638|consen 53 ELSGFFNLFSRYLREKAPTIDWDKIRPPPEDAVVPYDDIKNV------ELSKSLLN--KLAVLKLNGGLGTTMGCKGPKS 124 (498)
T ss_pred hHHHHHHHHHHHHhccCCccchhhccCCChhhccccccccch------hhHHHhhh--heEEEEecCCcCCccccCCCce
Confidence 4566888999998754 468999999999998888887532 45667786 9999999999999999999999
Q ss_pred ceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCc
Q 018126 141 CVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGT 220 (360)
Q Consensus 141 ~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~ 220 (360)
+ |++..+.||+++.++||..|.+. |.+.+|+++|+|.+|+++|.++++++.++ +-+|+.|.|++
T Consensus 125 ~--ieVR~g~tFLDL~V~QIe~LN~~-----------Y~~dVPlvLMNSfnTdedT~kil~ky~~~---kv~i~TF~QS~ 188 (498)
T KOG2638|consen 125 V--IEVRDGLTFLDLTVRQIENLNKT-----------YNVDVPLVLMNSFNTDEDTQKILKKYAGS---KVDIKTFNQSK 188 (498)
T ss_pred e--EEEcCCCchhHHHHHHHHHHHhh-----------cCCCCCEEEecccccchHHHHHHHHhcCC---ceeEEEecccc
Confidence 9 67789999999999999877643 67889999999999999999999997665 34699999999
Q ss_pred eeeeecCCcccccC---C-CcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCccccccCHHHHHHHHHcCCc
Q 018126 221 IPCVSKDGRFIMET---P-YKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVS 296 (360)
Q Consensus 221 ~P~~~~~gki~l~~---~-~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~~ 296 (360)
+|.++.|..++... + ..-+|+|+|||++|.+|+.||+||+|+++|++|+||.|+||+ ++++|.-++.+++.++++
T Consensus 189 ~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNL-GAtvDL~ILn~~i~~~~e 267 (498)
T KOG2638|consen 189 YPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNL-GATVDLNILNHVINNNIE 267 (498)
T ss_pred CCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccc-cceeeHHHHHHHhcCCCc
Confidence 99999999988743 2 346899999999999999999999999999999999999996 899999999999999999
Q ss_pred eEEEEeecCCCCcccceEEEEccCCCeEEEEecCCChHHHhhcccCCCce-eeeccceeeee
Q 018126 297 AGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRL-RFCWSNVCTFA 357 (360)
Q Consensus 297 ~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l-~f~~gni~~h~ 357 (360)
+.|+|+.|+.++.|+|+++.+ +|+++++||.|+|++...++.+ ..+. .||..||++++
T Consensus 268 y~MEvTdKT~aDvKgGtLi~y--~G~lrlLEiaQVP~ehv~eFkS-~kkFkifNTNNlWinL 326 (498)
T KOG2638|consen 268 YLMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFKS-IKKFKIFNTNNLWINL 326 (498)
T ss_pred eEEEecccchhhcccceEEee--cCEEEEEEeccCChhHhhhhcc-ceeEEEeccCCeEEeh
Confidence 999999999999999999998 7999999999999999988775 4444 46777888875
No 13
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.97 E-value=7.5e-09 Score=102.75 Aligned_cols=142 Identities=11% Similarity=0.147 Sum_probs=95.1
Q ss_pred CCEEEEEecCCCccccC---CCCCCCceeecCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcch
Q 018126 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg---~~~pKg~~~i~l~s~k-sllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (360)
+++.+|+||||.||||. .+.||+|+|| .+| +++++.++.+.+ .+ +--+++...+..
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV---~gk~PlIe~~l~~L~~---------------~G--i~~I~iv~~~~~ 60 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPF---GGRYRLIDFPLSNMVN---------------AG--IRNVFIFFKNKE 60 (369)
T ss_pred CcEEEEEECCCCCccccccccCCccccccc---CCeeeEEEEEhhhhhc---------------cC--CCEEEEEeCCCc
Confidence 36889999999999997 6889999999 899 899999998763 13 334555555655
Q ss_pred H-HHHHHHhhcCCCCCCCCcE---EEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEE
Q 018126 194 D-ATRKYFEGHKYFGLESDQV---TFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYI 269 (360)
Q Consensus 194 ~-~t~~~f~~~~~FGl~~~~v---~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi 269 (360)
+ .+++||.+...||++..+. .++.|+ ..|-|.|+.+..... .+.+...+-+++
T Consensus 61 ~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e--------------------~~~l~tg~~~a~~~a---~~~l~~~~~~~~ 117 (369)
T TIGR02092 61 RQSLFDHLGSGREWDLHRKRDGLFVFPYND--------------------RDDLSEGGKRYFSQN---LEFLKRSTSEYT 117 (369)
T ss_pred HHHHHHHHhCCCCCCcccccCcEEEEeccC--------------------CCCcccChHHHHHHH---HHHHHhCCCCEE
Confidence 5 9999998877788764211 111221 224566665433221 222322233789
Q ss_pred EEEcCCCccccccCHHHHHHHHHcCCceEEEEee
Q 018126 270 DCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVR 303 (360)
Q Consensus 270 ~v~~vDN~L~~~~DP~flG~~~~~~~~~~~kvv~ 303 (360)
.+.+.|++ ....--.++-+|.++++++++-+.+
T Consensus 118 lvlnGD~l-~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 118 VVLNSHMV-CNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred EEECCCEE-EecCHHHHHHHHHHcCCCEEEEEEe
Confidence 99999996 4444445788888889988766544
No 14
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=98.96 E-value=3.7e-08 Score=95.69 Aligned_cols=158 Identities=19% Similarity=0.255 Sum_probs=107.9
Q ss_pred CEEEEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHH
Q 018126 119 KLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (360)
.+.+|+||||.||||.. ..||.++|| .+|+++++.++.+.. .++. ..+|++.....+.
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv---~gkPmI~~~l~~l~~---------------aGi~-~I~ii~~~~~~~~ 63 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI---YDKPMIYYPLSTLML---------------AGIR-DILIISTPQDTPR 63 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEE---CCEEHHHHHHHHHHH---------------CCCC-EEEEEecCCchHH
Confidence 47789999999999974 789999999 789999998887753 1322 2455666666778
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCC
Q 018126 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (360)
Q Consensus 196 t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vD 275 (360)
++++|.+.+.||++ +.+..| ..|.|.|+.+....+ +.. +-+ +.+...|
T Consensus 64 ~~~~l~~g~~~g~~---i~y~~q---------------------~~~~Gta~Al~~a~~------~i~-~~~-~~lv~gD 111 (292)
T PRK15480 64 FQQLLGDGSQWGLN---LQYKVQ---------------------PSPDGLAQAFIIGEE------FIG-GDD-CALVLGD 111 (292)
T ss_pred HHHHHcCccccCce---eEEEEC---------------------CCCCCHHHHHHHHHH------HhC-CCC-EEEEECC
Confidence 99999887778874 334333 237899998776432 222 224 4556699
Q ss_pred CccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCC
Q 018126 276 NALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSEL 331 (360)
Q Consensus 276 N~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel 331 (360)
|++....-..++-.|..++.++++-+.+..+| ++.|++... .+|+ |+++.|=
T Consensus 112 ~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p-~~yGvv~~d-~~g~--v~~i~EK 163 (292)
T PRK15480 112 NIFYGHDLPKLMEAAVNKESGATVFAYHVNDP-ERYGVVEFD-QNGT--AISLEEK 163 (292)
T ss_pred eeeeccCHHHHHHHHHhCCCCeEEEEEEcCCc-ccCcEEEEC-CCCc--EEEEEEC
Confidence 98755455568888877777776655544444 678998764 3454 4444443
No 15
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=98.91 E-value=6e-08 Score=93.87 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=104.0
Q ss_pred EEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||.. ..||.++|| .+|+++++.++.+.. .++. .++|.|..+..+.+++
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv---~gkPmI~~~L~~l~~---------------aGi~-~I~iv~~~~~~~~~~~ 62 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLML---------------AGIR-DILIISTPQDTPRFQQ 62 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEE---CCEEhHHHHHHHHHH---------------CCCC-EEEEEecCCcHHHHHH
Confidence 58999999999974 789999999 789999998887653 1322 3456677777788999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
+|.+...||++ +.+..| ..|.|.|+.+..... +.. -+.+.+++.||++
T Consensus 63 ~lg~g~~~g~~---i~~~~q---------------------~~~~Gta~al~~a~~------~l~--~~~~~li~gD~i~ 110 (286)
T TIGR01207 63 LLGDGSQWGVN---LSYAVQ---------------------PSPDGLAQAFIIGED------FIG--GDPSALVLGDNIF 110 (286)
T ss_pred HhccccccCce---EEEEEc---------------------cCCCCHHHHHHHHHH------HhC--CCCEEEEECCEec
Confidence 99877778874 444333 247898887765532 222 1334556799987
Q ss_pred ccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
....-..++-.+.+.++++++-+.+..+| ++.|++... .+|+ |+++.|
T Consensus 111 ~~~~l~~ll~~~~~~~~~~ti~~~~v~~p-~~yGvv~~d-~~g~--V~~i~E 158 (286)
T TIGR01207 111 YGHDLSDLLKRAAARESGATVFAYQVSDP-ERYGVVEFD-SNGR--AISIEE 158 (286)
T ss_pred cccCHHHHHHHHHhcCCCcEEEEEEccCH-HHCceEEEC-CCCe--EEEEEE
Confidence 44333557777877777776655554444 678998764 3453 444444
No 16
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.8e-08 Score=99.11 Aligned_cols=157 Identities=23% Similarity=0.360 Sum_probs=115.3
Q ss_pred EEEEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHH
Q 018126 120 LAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (360)
Q Consensus 120 vavvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t 196 (360)
+-+|+||||.||||. .+.||.|+|| .+|+++++.++.+.+ .+ +--++++..+..+.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI---~gkPii~~~l~~L~~---------------~G--v~eivi~~~y~~~~i 61 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPI---AGKPLIEYVLEALAA---------------AG--VEEIVLVVGYLGEQI 61 (358)
T ss_pred ceEEEEeCCccccccccccCCCccccee---CCccHHHHHHHHHHH---------------CC--CcEEEEEeccchHHH
Confidence 457899999999997 6789999999 699999999997753 23 456788899999999
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCC
Q 018126 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (360)
Q Consensus 197 ~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN 276 (360)
++||.+...+|++ |.+.. ...|.|.||.++...+ .+. .+-+++.+.|+
T Consensus 62 ~~~~~d~~~~~~~---I~y~~---------------------e~~~lGTag~l~~a~~-----~l~---~~~f~v~~GDv 109 (358)
T COG1208 62 EEYFGDGEGLGVR---ITYVV---------------------EKEPLGTAGALKNALD-----LLG---GDDFLVLNGDV 109 (358)
T ss_pred HHHHhcccccCCc---eEEEe---------------------cCCcCccHHHHHHHHH-----hcC---CCcEEEEECCe
Confidence 9999987666664 33333 3337899998887643 222 27889999999
Q ss_pred ccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCCC
Q 018126 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELD 332 (360)
Q Consensus 277 ~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~ 332 (360)
+. ...--.++.++..+++..++-.++...+ ...|++.... ++ -.|+++.|-|
T Consensus 110 ~~-~~dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~~~~-~~-~~v~~f~ekp 161 (358)
T COG1208 110 LT-DLDLSELLEFHKKKGALATIALTRVLDP-SEFGVVETDD-GD-GRVVEFREKP 161 (358)
T ss_pred ee-ccCHHHHHHHHHhccCccEEEEEecCCC-CcCceEEecC-CC-ceEEEEEecC
Confidence 84 3333558999998876676666666666 5678777642 22 4566666665
No 17
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.87 E-value=8.2e-08 Score=95.62 Aligned_cols=172 Identities=17% Similarity=0.228 Sum_probs=107.1
Q ss_pred CCEEEEEecCCCccccCC---CCCCCceeecCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcch
Q 018126 118 GKLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg~---~~pKg~~~i~l~s~k-sllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (360)
+++-+|+||||.||||.. +.||.++|| .+| +++++.++.+.+ .++. ..+|.| .+..
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv---~gk~pli~~~l~~l~~---------------~Gi~-~i~iv~-~~~~ 61 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPF---GGKYRIIDFTLSNCAN---------------SGID-TVGVLT-QYQP 61 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeee---CCceeehhHHHHHHHh---------------CCCC-EEEEEe-cCCH
Confidence 478899999999999985 789999999 788 899999997753 1322 234444 6788
Q ss_pred HHHHHHHhhcCCCCCCCC--cEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEE
Q 018126 194 DATRKYFEGHKYFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 271 (360)
Q Consensus 194 ~~t~~~f~~~~~FGl~~~--~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v 271 (360)
+.+++||++...|+++.. .+.+. | |... ..-...|.|+|+.+.... +.+....-+++.|
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~~~i~-~---~~~~----------~~~~~~~~Gta~al~~a~-----~~l~~~~~~~~lV 122 (380)
T PRK05293 62 LELNNHIGIGSPWDLDRINGGVTIL-P---PYSE----------SEGGKWYKGTAHAIYQNI-----DYIDQYDPEYVLI 122 (380)
T ss_pred HHHHHHHhCCCcccccCCCCCEEEe-C---Cccc----------CCCCcccCCcHHHHHHHH-----HHHHhCCCCEEEE
Confidence 999999987777776542 12211 1 0000 000012478877665442 2232222368899
Q ss_pred EcCCCccccccCHHHHHHHHHcCCceEEEEeec-CCCCcccceEEEEccCCCeEEEEecCCC
Q 018126 272 YGVDNALVRVADPTFLGYFIDKGVSAGAKVVRK-AYPQEKVGVFVRRGKGGPLTVVEYSELD 332 (360)
Q Consensus 272 ~~vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K-~~p~E~vGvi~~~~~~g~~~vvEYsel~ 332 (360)
.+.|++. ...--.++-.|...++++++-+.+. .....+.|++... .+| .|.++.|-|
T Consensus 123 ~~gD~l~-~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d-~~g--~V~~~~eKp 180 (380)
T PRK05293 123 LSGDHIY-KMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTD-ENM--RIVEFEEKP 180 (380)
T ss_pred ecCCEEE-cCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEEC-CCC--cEEEEEeCC
Confidence 9999974 4333447777878888865443222 1123567887653 244 355665544
No 18
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.87 E-value=1.1e-07 Score=87.53 Aligned_cols=187 Identities=13% Similarity=0.122 Sum_probs=110.2
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+ ...||+++|| .+++++++.++.+.+ .++. ..+|.|. +..+.+++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi---~g~piI~~~l~~l~~---------------~Gi~-~I~iv~~-~~~~~i~~ 62 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPL---ANVPLIDYTLEFLAL---------------NGVE-EVFVFCC-SHSDQIKE 62 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEE---CCEehHHHHHHHHHH---------------CCCC-eEEEEeC-CCHHHHHH
Confidence 6899999999998 5789999999 789999998887763 1321 2455565 57889999
Q ss_pred HHhhcCCCCCCCC--cEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCC
Q 018126 199 YFEGHKYFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (360)
Q Consensus 199 ~f~~~~~FGl~~~--~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN 276 (360)
||++...++++.. .+.+..| ..+.|.|+.++.+...+.+ .+++.+.+.|+
T Consensus 63 ~l~~~~~~~~~~~~~~i~~~~~---------------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~ 114 (217)
T cd04197 63 YIEKSKWSKPKSSLMIVIIIMS---------------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDV 114 (217)
T ss_pred HHhhccccccccCcceEEEEeC---------------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCe
Confidence 9998655554321 1221111 1246777777766443322 24567889998
Q ss_pred ccccccCHHHHHHHHHc-----CCceEEEEeecCCCCc-----ccceEEEEccCCCeEEEEecCCChHHHh---------
Q 018126 277 ALVRVADPTFLGYFIDK-----GVSAGAKVVRKAYPQE-----KVGVFVRRGKGGPLTVVEYSELDPSLAS--------- 337 (360)
Q Consensus 277 ~L~~~~DP~flG~~~~~-----~~~~~~kvv~K~~p~E-----~vGvi~~~~~~g~~~vvEYsel~~~~~~--------- 337 (360)
+. ...--.++-+|... ++++++-+.+...+.. .-|++...+++| +|+.+.|-|..-..
T Consensus 115 i~-~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~--~v~~~~ekp~~~~~~~~~~~~~~ 191 (217)
T cd04197 115 VS-NIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTS--RLLHYEELPGSKYRSITDLPSEL 191 (217)
T ss_pred ee-ccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCC--cEEEEecccCCCCccccccCHHH
Confidence 74 33333478888873 7777654444333221 246665542224 35444443321100
Q ss_pred hcccCCCceeeeccceeeeeec
Q 018126 338 AINQETGRLRFCWSNVCTFAST 359 (360)
Q Consensus 338 ~~~~~~g~l~f~~gni~~h~f~ 359 (360)
.....+=.+.++.-+..+++|+
T Consensus 192 ~~~~~~~~i~~~l~d~~iYi~~ 213 (217)
T cd04197 192 LGSNSEVEIRHDLLDCHIDICS 213 (217)
T ss_pred hcCCCcEEEECCceecCEEEeC
Confidence 0011122455666666666665
No 19
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=98.86 E-value=5.8e-08 Score=94.49 Aligned_cols=182 Identities=14% Similarity=0.130 Sum_probs=108.4
Q ss_pred CEEEEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHH
Q 018126 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (360)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (360)
.+.+|+||||.||||. ...||.|+|| .+|+++++.++.+.. .+ |.-++....+..+.
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV---~gkPiI~~vl~~l~~---------------~G--i~~ivivv~~~~~~ 62 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA---------------AG--IKEIVLVTHASKNA 62 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEecCChHH
Confidence 4678999999999998 5779999999 789999999887763 13 33455555578889
Q ss_pred HHHHHhhcCCC------------------CCCC-CcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCc
Q 018126 196 TRKYFEGHKYF------------------GLES-DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSK 256 (360)
Q Consensus 196 t~~~f~~~~~F------------------Gl~~-~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg 256 (360)
+.+||..+..+ +.+. -+|.+. ....|.|.||.......
T Consensus 63 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---------------------~q~~~lGtg~Av~~a~~-- 119 (297)
T TIGR01105 63 VENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV---------------------RQAQPLGLGHSILCARP-- 119 (297)
T ss_pred HHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEe---------------------eCCCcCchHHHHHHHHH--
Confidence 99999653110 0000 012221 23457899997655432
Q ss_pred HHHHHHHCCCeEEEEEcCCCccccc--------cCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEE---ccCCCe-E
Q 018126 257 LLEDMATRGIKYIDCYGVDNALVRV--------ADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR---GKGGPL-T 324 (360)
Q Consensus 257 ~l~~l~~~Gi~yi~v~~vDN~L~~~--------~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~---~~~g~~-~ 324 (360)
.+ . -+-+.+.+.|++. .. .--.++-++.+.++.+.+-...+.+ ..+.|++... +.+|+. .
T Consensus 120 ---~l-~--~~~flvv~gD~l~-~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~-~~~yGvv~~~~~~d~~g~v~~ 191 (297)
T TIGR01105 120 ---VV-G--DNPFVVVLPDIII-DDATADPLRYNLAAMIARFNETGRSQVLAKRMPGD-LSEYSVIQTKEPLDREGKVSR 191 (297)
T ss_pred ---Hh-C--CCCEEEEECCeec-cccccccchhHHHHHHHHHHHhCCcEEEEEEcCCC-CccceEEEecccccCCCCeee
Confidence 12 1 1335566688863 21 1123666666666655332222223 4678999763 224553 6
Q ss_pred EEEecCCChHHHhhcccCCCceeeeccceeeeeec
Q 018126 325 VVEYSELDPSLASAINQETGRLRFCWSNVCTFAST 359 (360)
Q Consensus 325 vvEYsel~~~~~~~~~~~~g~l~f~~gni~~h~f~ 359 (360)
|+|+.|=|..-.. ...+..|.++|+|+
T Consensus 192 I~~~~EKP~~~~~--------~~s~~~~~GiYi~~ 218 (297)
T TIGR01105 192 IVEFIEKPDQPQT--------LDSDLMAVGRYVLS 218 (297)
T ss_pred EeEEEECCCCccc--------CCcCEEEEEEEEEC
Confidence 7888764421100 11234577788875
No 20
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.85 E-value=1.2e-07 Score=95.69 Aligned_cols=171 Identities=15% Similarity=0.281 Sum_probs=107.4
Q ss_pred CCEEEEEecCCCccccC---CCCCCCceeecCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcch
Q 018126 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg---~~~pKg~~~i~l~s~k-sllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (360)
.++.+|+||||.||||. .+.||.|+|| .+| +++++.++.+.. .+ |--+++...+..
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv---~gk~plI~~~L~~l~~---------------~G--i~~i~iv~~~~~ 63 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPF---GGSYRLIDFVLSNLVN---------------SG--YLRIYVLTQYKS 63 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCcccceee---CCcceEhHHHHHHHHH---------------CC--CCEEEEEeccCH
Confidence 48999999999999998 8889999999 787 999998887653 13 334566667889
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEc
Q 018126 194 DATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (360)
Q Consensus 194 ~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~ 273 (360)
+.+.+||.+. +++....+.++.. .|.-. ..-...|.|.||.+... ++.+....-+++.+.+
T Consensus 64 ~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~----------~~~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~~ 124 (407)
T PRK00844 64 HSLDRHISQT--WRLSGLLGNYITP--VPAQQ----------RLGKRWYLGSADAIYQS-----LNLIEDEDPDYVVVFG 124 (407)
T ss_pred HHHHHHHHhC--cCccccCCCeEEE--CCccc----------CCCCCcccCCHHHHHHH-----HHHHHhcCCCEEEEec
Confidence 9999999742 3332111222110 00000 00012368998876654 2334333347889999
Q ss_pred CCCccccccCHHHHHHHHHcCCceEEEEee--cCCCCcccceEEEEccCCCeEEEEecCCC
Q 018126 274 VDNALVRVADPTFLGYFIDKGVSAGAKVVR--KAYPQEKVGVFVRRGKGGPLTVVEYSELD 332 (360)
Q Consensus 274 vDN~L~~~~DP~flG~~~~~~~~~~~kvv~--K~~p~E~vGvi~~~~~~g~~~vvEYsel~ 332 (360)
.|++. ...--.++-+|..+++++++-+.+ ..+ ....|++... .+|+ |.++.|=|
T Consensus 125 gD~v~-~~dl~~l~~~h~~~~~~~ti~~~~~~~~~-~~~~Gvv~~d-~~g~--v~~~~eKp 180 (407)
T PRK00844 125 ADHVY-RMDPRQMVDFHIESGAGVTVAAIRVPREE-ASAFGVIEVD-PDGR--IRGFLEKP 180 (407)
T ss_pred CCEEE-cCCHHHHHHHHHhcCCcEEEEEEecchHH-cccCCEEEEC-CCCC--EEEEEECC
Confidence 99973 444345788888888887654432 223 3467888663 3454 44554433
No 21
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.73 E-value=5e-07 Score=82.98 Aligned_cols=152 Identities=19% Similarity=0.218 Sum_probs=96.7
Q ss_pred EEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+. ..||.++|+ .+++++++.++.+.+ .+ +.-+++...+..+.+.+
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi---~g~~li~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~~ 61 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV---AGKPLIDHALDRLAA---------------AG--IRRIVVNTHHLADQIEA 61 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEccCCHHHHHH
Confidence 58999999999974 789999999 689999999887763 12 44556666788999999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+ .++|+. |.+..| + ..+.|.++.+.... +.+ . -+++++.+.|++.
T Consensus 62 ~~~~-~~~~~~---i~~~~~----------------~----~~~~g~~~~l~~~~-----~~~-~--~~~~lv~~~D~i~ 109 (221)
T cd06422 62 HLGD-SRFGLR---ITISDE----------------P----DELLETGGGIKKAL-----PLL-G--DEPFLVVNGDILW 109 (221)
T ss_pred HHhc-ccCCce---EEEecC----------------C----CcccccHHHHHHHH-----Hhc-C--CCCEEEEeCCeee
Confidence 9986 455542 322111 0 13567766544332 222 2 2789999999974
Q ss_pred ccccCHHHHHHHH--HcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 279 VRVADPTFLGYFI--DKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 279 ~~~~DP~flG~~~--~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
...--.++=.|. ..++.+++.+++... .+..|++... .+| .|+++.+
T Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~d-~~~--~v~~~~~ 158 (221)
T cd06422 110 -DGDLAPLLLLHAWRMDALLLLLPLVRNPG-HNGVGDFSLD-ADG--RLRRGGG 158 (221)
T ss_pred -CCCHHHHHHHHHhccCCCceEEEEEEcCC-CCCcceEEEC-CCC--cEeeccc
Confidence 433344565665 355666665555443 3455877653 244 3555533
No 22
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=98.69 E-value=8.3e-07 Score=82.10 Aligned_cols=153 Identities=24% Similarity=0.372 Sum_probs=96.9
Q ss_pred EEEEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHH
Q 018126 120 LAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (360)
Q Consensus 120 vavvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t 196 (360)
+.+|+||||.||||+ ...||.++|| .+++++++.++.+.+ .++. ..+|.|+. ..+.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i---~g~~li~~~l~~l~~---------------~~~~-~i~vv~~~-~~~~~ 60 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV---AGKPIIQYAIEDLRE---------------AGIE-DIGIVVGP-TGEEI 60 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEE---CCcchHHHHHHHHHH---------------CCCC-EEEEEcCC-CHHHH
Confidence 357999999999996 5789999999 689999998887653 1211 34566665 78889
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCC
Q 018126 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (360)
Q Consensus 197 ~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN 276 (360)
.+++++...++++ +.+..| ..|.|.|+.+..-.. .+ . +-. +.+.+.|.
T Consensus 61 ~~~~~~~~~~~~~---i~~~~~---------------------~~~~g~~~sl~~a~~-----~i-~-~~~-~li~~~D~ 108 (236)
T cd04189 61 KEALGDGSRFGVR---ITYILQ---------------------EEPLGLAHAVLAARD-----FL-G-DEP-FVVYLGDN 108 (236)
T ss_pred HHHhcchhhcCCe---EEEEEC---------------------CCCCChHHHHHHHHH-----hc-C-CCC-EEEEECCe
Confidence 9999875556653 333222 125677665554322 22 1 224 45566788
Q ss_pred ccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 277 ~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
++ ...--.++-.+...++++++-+.+-.++ .+.|++... +| .|+++.|
T Consensus 109 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~d--~~--~v~~~~e 156 (236)
T cd04189 109 LI-QEGISPLVRDFLEEDADASILLAEVEDP-RRFGVAVVD--DG--RIVRLVE 156 (236)
T ss_pred ec-CcCHHHHHHHHHhcCCceEEEEEECCCc-ccceEEEEc--CC--eEEEEEE
Confidence 75 3333336666777888887766654443 456776542 34 5666554
No 23
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=98.68 E-value=2.8e-07 Score=85.67 Aligned_cols=159 Identities=18% Similarity=0.272 Sum_probs=107.7
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~k-sllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
.|+||||.||||. .+.||.++|+ .++ +++++.++.+.+ .+.. -.++.+..+..+.+.
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i---~g~~pli~~~l~~l~~---------------~g~~-~ii~V~~~~~~~~i~ 62 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPI---GGKYPLIDYVLENLAN---------------AGIK-EIIVVVNGYKEEQIE 62 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEE---TTEEEHHHHHHHHHHH---------------TTCS-EEEEEEETTTHHHHH
T ss_pred EEEECCCCCccCchhhhcccccccee---cCCCcchhhhhhhhcc---------------cCCc-eEEEEEeeccccccc
Confidence 5788999999997 6789999999 778 999999988764 1222 236777777889999
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCC-CeEEEEEcCCC
Q 018126 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG-IKYIDCYGVDN 276 (360)
Q Consensus 198 ~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~G-i~yi~v~~vDN 276 (360)
+++++...+++ +|.+..| ..|.|.|+...... +.+.... -+++.+.+.|+
T Consensus 63 ~~~~~~~~~~~---~i~~i~~---------------------~~~~Gta~al~~a~-----~~i~~~~~~~~~lv~~gD~ 113 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIVQ---------------------PEPLGTAGALLQAL-----DFIEEEDDDEDFLVLNGDI 113 (248)
T ss_dssp HHHTTSGGGTE---EEEEEEE---------------------SSSSCHHHHHHHTH-----HHHTTSEE-SEEEEETTEE
T ss_pred ccccccccccc---cceeeec---------------------ccccchhHHHHHHH-----HHhhhccccceEEEEeccc
Confidence 99998665663 2444332 22358888777653 3333222 24699999999
Q ss_pred ccccccCHHHHHHHHHcCCce--EEEEeecCCCCcccceEEEEccCCCeEEEEecCCCh
Q 018126 277 ALVRVADPTFLGYFIDKGVSA--GAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDP 333 (360)
Q Consensus 277 ~L~~~~DP~flG~~~~~~~~~--~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~ 333 (360)
+. ...-..++-.|...+.++ ++..++. ....+.|++... .+| .|+++-|=|.
T Consensus 114 i~-~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~g~v~~d-~~~--~V~~~~EKP~ 167 (248)
T PF00483_consen 114 IF-DDDLQDMLEFHRESNADGTVTLLVVPV-EDPSRYGVVEVD-EDG--RVIRIVEKPD 167 (248)
T ss_dssp EE-STTHHHHHHHHHHHSSCESEEEEEEES-SGGGGSEEEEEE-TTS--EEEEEEESCS
T ss_pred cc-cchhhhHHHhhhccccccccccccccc-cccccceeeeec-cce--eEEEEeccCc
Confidence 85 544456999999998854 4444443 346677887765 234 5666655444
No 24
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=98.67 E-value=3.1e-07 Score=85.58 Aligned_cols=155 Identities=16% Similarity=0.151 Sum_probs=97.0
Q ss_pred EEEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 121 AVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 121 avvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
.+|+||||.||||+. ..||.++|++ +++++++.++.+.+ .++. ..+|.++....+.+.
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~---~~pli~~~l~~l~~---------------~gi~-~i~vv~~~~~~~~~~ 62 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVY---DKPMIYYPLSTLML---------------AGIR-EILIISTPEDLPLFK 62 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEEC---CEEhHHHHHHHHHH---------------CCCC-EEEEEeCcchHHHHH
Confidence 479999999999974 7899999994 89999998887652 1221 345666666668899
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCc
Q 018126 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (360)
Q Consensus 198 ~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~ 277 (360)
++|.....++++ |.+-. ...|.|.|+.+.+... .+ . -+.+++.+.|++
T Consensus 63 ~~l~~~~~~~~~---i~~~~---------------------~~~~~G~~~al~~a~~-----~~-~--~~~~lv~~gD~~ 110 (240)
T cd02538 63 ELLGDGSDLGIR---ITYAV---------------------QPKPGGLAQAFIIGEE-----FI-G--DDPVCLILGDNI 110 (240)
T ss_pred HHHhcccccCce---EEEee---------------------CCCCCCHHHHHHHHHH-----hc-C--CCCEEEEECCEE
Confidence 999875556643 22211 1235777776544322 12 1 144567788987
Q ss_pred cccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 278 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 278 L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
+....--.++-+|..+++++++-+.+..+ .+..|++... .+| .|+++.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~d-~~g--~v~~~~e 159 (240)
T cd02538 111 FYGQGLSPILQRAAAQKEGATVFGYEVND-PERYGVVEFD-ENG--RVLSIEE 159 (240)
T ss_pred EccHHHHHHHHHHHhcCCCcEEEEEECCc-hhcCceEEec-CCC--cEEEEEE
Confidence 53332233666677777887665544444 3567887653 345 3555544
No 25
>PRK10122 GalU regulator GalF; Provisional
Probab=98.66 E-value=6.7e-07 Score=87.03 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=99.2
Q ss_pred CEEEEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHH
Q 018126 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (360)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (360)
++.+|++|||.||||. ...||.|+|| .+|+++++.++.+.. .+ |--+++...+..+.
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi---~gkpiI~~~l~~l~~---------------~G--i~~i~iv~~~~~~~ 62 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA---------------AG--IKEIVLVTHASKNA 62 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEcCCChHH
Confidence 6789999999999998 5779999999 789999998887763 13 22344445678899
Q ss_pred HHHHHhhcCCCCCC-------C--------------CcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhh
Q 018126 196 TRKYFEGHKYFGLE-------S--------------DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKS 254 (360)
Q Consensus 196 t~~~f~~~~~FGl~-------~--------------~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~ 254 (360)
+.+||.. + ++++ + -++.+.. ...|-|.|+.+.....
T Consensus 63 i~~~~~~-~-~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~---------------------q~~~lGtg~al~~a~~ 119 (297)
T PRK10122 63 VENHFDT-S-YELESLLEQRVKRQLLAEVQSICPPGVTIMNVR---------------------QGQPLGLGHSILCARP 119 (297)
T ss_pred HHHHHhc-c-hhHHHHHhhcchhhhHHhhhhccCCCceEEEee---------------------cCCcCchHHHHHHHHH
Confidence 9999963 2 2221 0 0122211 2347899987665533
Q ss_pred CcHHHHHHHCCCeEEEEEcCCCccccc--------cCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEc---cCCCe
Q 018126 255 SKLLEDMATRGIKYIDCYGVDNALVRV--------ADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG---KGGPL 323 (360)
Q Consensus 255 sg~l~~l~~~Gi~yi~v~~vDN~L~~~--------~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~---~~g~~ 323 (360)
.+ . +-++ .+.+.|++. .. .--.++-+|.+.++++.+-.....+ ..+.|++...+ .+|..
T Consensus 120 -----~l-~-~~~f-vvi~gD~l~-~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~-~~~yGvv~~d~~~~~~g~v 189 (297)
T PRK10122 120 -----AI-G-DNPF-VVVLPDVVI-DDASADPLRYNLAAMIARFNETGRSQVLAKRMPGD-LSEYSVIQTKEPLDREGKV 189 (297)
T ss_pred -----Hc-C-CCCE-EEEECCeec-cCccccccchhHHHHHHHHHHhCCcEEEEEECCCC-CCCceEEEecCcccCCCCe
Confidence 22 1 2244 455688863 31 1123677777777775432222223 45679887631 24543
Q ss_pred -EEEEecCCC
Q 018126 324 -TVVEYSELD 332 (360)
Q Consensus 324 -~vvEYsel~ 332 (360)
+|+++.|=|
T Consensus 190 ~~I~~~~EKp 199 (297)
T PRK10122 190 SRIVEFIEKP 199 (297)
T ss_pred eeEEEEEECC
Confidence 677776644
No 26
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.65 E-value=4.9e-07 Score=92.28 Aligned_cols=179 Identities=18% Similarity=0.274 Sum_probs=111.1
Q ss_pred CEEEEEecCCCccccC---CCCCCCceeecCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchH
Q 018126 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (360)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~pKg~~~i~l~s~k-sllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (360)
++.+|+||||.||||. ...||.++|+ .++ +++++.++.+.. .+ |.-+++...+..+
T Consensus 3 ~~~aIIlA~G~gtRl~PlT~~~PK~llpv---~g~~plId~~L~~l~~---------------~G--i~~i~iv~~~~~~ 62 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPLTKRRAKPAVPI---GGNYRLIDIPMSNCIN---------------SG--INKIYVLTQFNSA 62 (436)
T ss_pred ceEEEEEeCCCCCcchhhhcCCcccceEe---CCcceEehHHHHHHHh---------------CC--CCEEEEEeccCHH
Confidence 7889999999999997 6889999999 665 999998887653 13 3345556667889
Q ss_pred HHHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcC
Q 018126 195 ATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (360)
Q Consensus 195 ~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~v 274 (360)
.+.++|++...|+.... +.++.+..+.. ..+ ..-...|.|.||.+..... .+++...++-+++.+.+.
T Consensus 63 ~i~~~l~~~~~~~~~~~----~~~~~~~i~~~-----~q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~g 130 (436)
T PLN02241 63 SLNRHLSRAYNFGNGGN----FGDGFVEVLAA-----TQT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSG 130 (436)
T ss_pred HHHHHHhccCCCCCCcc----cCCCCEEEcCC-----ccc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecC
Confidence 99999985433443211 01111110000 000 0001258999988765432 233222223578999999
Q ss_pred CCccccccCHHHHHHHHHcCCceEEEEeecCC-CCcccceEEEEccCCCeEEEEecCCCh
Q 018126 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKAY-PQEKVGVFVRRGKGGPLTVVEYSELDP 333 (360)
Q Consensus 275 DN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~-p~E~vGvi~~~~~~g~~~vvEYsel~~ 333 (360)
|++ ....--.++-+|.++++++++-+.+... ..+..|++... .+| +|+++.|-|.
T Consensus 131 D~v-~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d-~~~--~v~~~~Ekp~ 186 (436)
T PLN02241 131 DHL-YRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKID-DTG--RIIEFSEKPK 186 (436)
T ss_pred CeE-EccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEEC-CCC--CEEEEEECCC
Confidence 997 4544445888898899987655443321 13677988763 234 4777777653
No 27
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=98.65 E-value=1.5e-06 Score=81.98 Aligned_cols=158 Identities=17% Similarity=0.300 Sum_probs=99.6
Q ss_pred EEEecCC--CccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHH
Q 018126 122 VLLLSGG--QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (360)
Q Consensus 122 vvlLAGG--~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t 196 (360)
+|+|||| .||||.. ..||.++|| .+++++++.++.+..+ .+ +.-+++...+..+.+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv---~g~plI~~~l~~l~~~--------------~g--i~~i~iv~~~~~~~i 61 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV---AGKPMIHHHIEACAKV--------------PD--LKEVLLIGFYPESVF 61 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeE---CCeeHHHHHHHHHHhc--------------CC--CcEEEEEecCCHHHH
Confidence 3788999 8999974 789999999 7899999988866521 02 334455566688999
Q ss_pred HHHHhhcC-CCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCC
Q 018126 197 RKYFEGHK-YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (360)
Q Consensus 197 ~~~f~~~~-~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vD 275 (360)
.+++.+.. .+|+. |.+..| ..|.|.|+....... .+....-++++|.+.|
T Consensus 62 ~~~l~~~~~~~~~~---i~~~~~---------------------~~~~Gt~~al~~a~~-----~l~~~~~~~~lv~~gD 112 (257)
T cd06428 62 SDFISDAQQEFNVP---IRYLQE---------------------YKPLGTAGGLYHFRD-----QILAGNPSAFFVLNAD 112 (257)
T ss_pred HHHHHhcccccCce---EEEecC---------------------CccCCcHHHHHHHHH-----HhhccCCCCEEEEcCC
Confidence 99997632 23431 222211 235788887655432 2322224688999999
Q ss_pred CccccccCHHHHHHHHHcCCceEEEEeecC-CCCcccceEEEEccCCCeEEEEecC
Q 018126 276 NALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 276 N~L~~~~DP~flG~~~~~~~~~~~kvv~K~-~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
++ ....--.++-+|.++++++++-+.+.. ......|++.....+|+ |.++.|
T Consensus 113 ~~-~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~--v~~~~E 165 (257)
T cd06428 113 VC-CDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGE--VLHYVE 165 (257)
T ss_pred ee-cCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCe--EEEEEe
Confidence 98 344434588899888888865544321 12355688765312453 444444
No 28
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=98.64 E-value=8.8e-07 Score=82.19 Aligned_cols=157 Identities=20% Similarity=0.314 Sum_probs=100.1
Q ss_pred EEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+. +.||.++|+ .+++++++.++.+.. .+ +.-++.+..+.++.+++
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~---------------~g--~~~v~iv~~~~~~~~~~ 62 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVEF---CNKPMIEHQIEALAK---------------AG--VKEIILAVNYRPEDMVP 62 (233)
T ss_pred EEEecCCCccccCccccCCCCccCeE---CCcchHHHHHHHHHH---------------CC--CcEEEEEeeeCHHHHHH
Confidence 68999999999973 789999999 689999998887763 12 22334444566788999
Q ss_pred HHhhc-CCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCc
Q 018126 199 YFEGH-KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (360)
Q Consensus 199 ~f~~~-~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~ 277 (360)
++.+. ..+|+. +.+. ....|.|.|+.+..... .+ ...-+-+.+.+.|++
T Consensus 63 ~l~~~~~~~~~~---i~~~---------------------~~~~~~G~~~al~~a~~-----~~-~~~~~~~lv~~~D~~ 112 (233)
T cd06425 63 FLKEYEKKLGIK---ITFS---------------------IETEPLGTAGPLALARD-----LL-GDDDEPFFVLNSDVI 112 (233)
T ss_pred HHhcccccCCeE---EEec---------------------cCCCCCccHHHHHHHHH-----Hh-ccCCCCEEEEeCCEe
Confidence 99742 113321 1110 01236788776655422 22 221233677788987
Q ss_pred cccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCCC
Q 018126 278 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELD 332 (360)
Q Consensus 278 L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~ 332 (360)
. ......++-++...++++++-+.+... ..+.|++.....+| +|+++.|=|
T Consensus 113 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~d~~~~--~v~~~~ekp 163 (233)
T cd06425 113 C-DFPLAELLDFHKKHGAEGTILVTKVED-PSKYGVVVHDENTG--RIERFVEKP 163 (233)
T ss_pred e-CCCHHHHHHHHHHcCCCEEEEEEEcCC-ccccCeEEEcCCCC--EEEEEEECC
Confidence 4 444467899999999998877776543 45778886642123 577775533
No 29
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.61 E-value=2.2e-06 Score=87.29 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=103.0
Q ss_pred CEEEEEecCCCccccC---CCCCCCceeecCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchH
Q 018126 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (360)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~pKg~~~i~l~s~k-sllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (360)
++.+|+||||.||||. .+.||.++|| .++ +++++.++++.. .+ +.-+++...+..+
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi---~gk~plI~~~L~~l~~---------------~G--i~~vivv~~~~~~ 62 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPL---AGKYRLIDIPISNCIN---------------SG--INKIYVLTQFNSA 62 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEE---CCeeEEeHHHHHHHHH---------------CC--CCEEEEEecCCHH
Confidence 6889999999999997 4889999999 788 999998887653 13 3334445557889
Q ss_pred HHHHHHhhcCCCCC-CCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEc
Q 018126 195 ATRKYFEGHKYFGL-ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (360)
Q Consensus 195 ~t~~~f~~~~~FGl-~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~ 273 (360)
.++++|.+...++. ...-+.++. . +....-...+.|.||.+.... +.+....-+++.|.+
T Consensus 63 ~i~~~l~~~~~~~~~~~g~~~i~~--------~------~~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl~ 123 (429)
T PRK02862 63 SLNRHISQTYNFDGFSGGFVEVLA--------A------QQTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLILS 123 (429)
T ss_pred HHHHHHhcCcCccccCCCEEEEeC--------C------cccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEec
Confidence 99999986432221 101011100 0 000000112368988776553 233333346889999
Q ss_pred CCCccccccCHHHHHHHHHcCCceEEEEeecCCC-CcccceEEEEccCCCeEEEEecCCC
Q 018126 274 VDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELD 332 (360)
Q Consensus 274 vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p-~E~vGvi~~~~~~g~~~vvEYsel~ 332 (360)
.|++. ...--.++-+|.+.++++++-+.+...+ ....|++... .+|+ |.++.|-|
T Consensus 124 gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d-~~g~--V~~~~Ekp 179 (429)
T PRK02862 124 GDQLY-RMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTD-DDGR--ITEFSEKP 179 (429)
T ss_pred CCEEE-eCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEEC-CCCc--EEEEEECC
Confidence 99964 4333457888888888876655333211 2356887653 2443 44444433
No 30
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.61 E-value=1.5e-06 Score=88.52 Aligned_cols=167 Identities=13% Similarity=0.215 Sum_probs=104.7
Q ss_pred CEEEEEecCCCccccCC---CCCCCceeecCCCCCc-cHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchH
Q 018126 119 KLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKS-LFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~---~~pKg~~~i~l~s~ks-llql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (360)
++.+|+||||.||||.. ..||.++|+ .+++ ++++.++.+.+ .+ +.-+++...+..+
T Consensus 15 ~~~aVILAaG~GtRl~pLT~~~PK~llpv---~gkp~lI~~~l~~l~~---------------~G--i~~i~vv~~~~~~ 74 (425)
T PRK00725 15 DTLALILAGGRGSRLKELTDKRAKPAVYF---GGKFRIIDFALSNCIN---------------SG--IRRIGVLTQYKAH 74 (425)
T ss_pred ceEEEEECCCCCCcchhhhCCCcceeEEE---CCEEEEhHHHHHHHHH---------------CC--CCeEEEEecCCHH
Confidence 79999999999999984 789999999 7886 99998887753 12 2233444457899
Q ss_pred HHHHHHhhcCCCCCCCC----cEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEE
Q 018126 195 ATRKYFEGHKYFGLESD----QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYID 270 (360)
Q Consensus 195 ~t~~~f~~~~~FGl~~~----~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~ 270 (360)
.+.++|.+. +++.+. .+.++.+ .........|.|.|+.+.... +.+....-+++.
T Consensus 75 ~i~~~~~~~--~~~~~~~~~~~i~i~~~--------------~~~~~~e~~~lGTa~al~~a~-----~~l~~~~~d~~l 133 (425)
T PRK00725 75 SLIRHIQRG--WSFFREELGEFVDLLPA--------------QQRVDEENWYRGTADAVYQNL-----DIIRRYDPKYVV 133 (425)
T ss_pred HHHHHHHhh--hcccccCCCCeEEEeCC--------------cccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEE
Confidence 999999753 333211 1111110 001112244789988766543 334333347899
Q ss_pred EEcCCCccccccCHHHHHHHHHcCCceEEEEeecC-CCCcccceEEEEccCCCeEEEEecC
Q 018126 271 CYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 271 v~~vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K~-~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
|.+.|++. ...--.++-+|..+++++++-+.+.. ......|++... .+|+ |.++.|
T Consensus 134 Vl~gD~l~-~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d-~~~~--V~~~~E 190 (425)
T PRK00725 134 ILAGDHIY-KMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVD-ENDR--ITAFVE 190 (425)
T ss_pred EecCCeEe-ccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEEC-CCCC--EEEEEE
Confidence 99999964 44334578888888888866543321 123566888764 2443 445544
No 31
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=98.60 E-value=2.7e-06 Score=78.15 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=89.0
Q ss_pred EEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHHh
Q 018126 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (360)
Q Consensus 122 vvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f~ 201 (360)
+|+||||.||||+...||.+.|+ .+|+++++.++.+.. .++ -..+|.|+.. ++.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v---~gkpli~~~i~~l~~---------------~~i-~~i~iv~~~~-~~~i~~~~~ 60 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVLDAARA---------------LGP-DRIVVVVGHG-AEQVKKALA 60 (229)
T ss_pred CEEEeCCCCccCCCCCChhccee---CCccHHHHHHHHHHh---------------CCC-CeEEEEECCC-HHHHHHHhC
Confidence 48999999999998789999999 789999998887653 121 1345555544 788888887
Q ss_pred hcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCccccc
Q 018126 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 281 (360)
Q Consensus 202 ~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~~~ 281 (360)
+ ++ +.++.|. .+.|.++...... +.+ +.+.+++.+.+.|+++...
T Consensus 61 ~---~~-----~~~~~~~---------------------~~~g~~~ai~~a~-----~~~-~~~~~~vli~~~D~p~~~~ 105 (229)
T cd02540 61 N---PN-----VEFVLQE---------------------EQLGTGHAVKQAL-----PAL-KDFEGDVLVLYGDVPLITP 105 (229)
T ss_pred C---CC-----cEEEECC---------------------CCCCCHHHHHHHH-----Hhh-ccCCCeEEEEeCCccccCH
Confidence 4 22 3333321 1356666544432 223 2235789999999975321
Q ss_pred cCH-HHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCC
Q 018126 282 ADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGP 322 (360)
Q Consensus 282 ~DP-~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~ 322 (360)
.+- .++-.+.+.++++++-+.+..+| ...|.+... .+|+
T Consensus 106 ~~i~~l~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~-~~~~ 145 (229)
T cd02540 106 ETLQRLLEAHREAGADVTVLTAELEDP-TGYGRIIRD-GNGK 145 (229)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEcCCC-CCccEEEEc-CCCC
Confidence 111 13444555567776666655555 456766543 2454
No 32
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=98.59 E-value=2.1e-06 Score=81.35 Aligned_cols=170 Identities=17% Similarity=0.243 Sum_probs=103.5
Q ss_pred EEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+. +.||.++|| .+++++++.++.+.+ .+ |.-+++...+..+.+.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv---~g~pii~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~~ 61 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI---GGKPILWHIMKIYSH---------------HG--INDFIICCGYKGYVIKE 61 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEcCCCHHHHHH
Confidence 58899999999964 489999999 789999887776542 12 55667777788999999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
+|.+...++.+ -++.+ +++.+.......+.. .-.......|.|+||.+...... + +-+++.+.+.|++.
T Consensus 62 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~gt~~al~~~~~~-----i---~~e~flv~~gD~i~ 130 (254)
T TIGR02623 62 YFANYFLHMSD-VTFHM-ADNTMEVHHKRVEPW-RVTLVDTGESTQTGGRLKRVREY-----L---DDEAFCFTYGDGVA 130 (254)
T ss_pred HHHhhhhcccC-eeEEe-cccccccccccCCcc-ceeeeecCCcCCcHHHHHHHHHh-----c---CCCeEEEEeCCeEe
Confidence 99764322222 12222 222222221111000 00001123578999877655331 2 13567799999973
Q ss_pred ccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
...--.++-+|...++++++-++. +.+..|++... +| .|.++.|
T Consensus 131 -~~dl~~~~~~h~~~~~d~tl~~~~---~~~~yG~v~~d--~~--~V~~~~E 174 (254)
T TIGR02623 131 -DIDIKALIAFHRKHGKKATVTAVQ---PPGRFGALDLE--GE--QVTSFQE 174 (254)
T ss_pred -cCCHHHHHHHHHHcCCCEEEEEec---CCCcccEEEEC--CC--eEEEEEe
Confidence 544445788888888888765443 23567887653 34 4555554
No 33
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=98.56 E-value=2.1e-06 Score=77.86 Aligned_cols=152 Identities=22% Similarity=0.370 Sum_probs=99.4
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+ ...||.++|+ .+++++++.++.+... ++ -..+|.|. +..+.+.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v---~g~pli~~~l~~l~~~---------------g~-~~i~vv~~-~~~~~i~~ 60 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI---AGKPILEYIIERLARA---------------GI-DEIILVVG-YLGEQIEE 60 (217)
T ss_pred CEEecCCccccccccccCCCccccEE---CCeeHHHHHHHHHHHC---------------CC-CEEEEEec-cCHHHHHH
Confidence 4889999999997 4679999999 7899999998877531 21 12345554 46778899
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+...+|+. |.+..| ..|.|.++.+..... .+ .-+++.+.+.|++.
T Consensus 61 ~~~~~~~~~~~---i~~~~~---------------------~~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~~ 108 (217)
T cd04181 61 YFGDGSKFGVN---IEYVVQ---------------------EEPLGTAGAVRNAED-----FL---GDDDFLVVNGDVLT 108 (217)
T ss_pred HHcChhhcCce---EEEEeC---------------------CCCCccHHHHHHhhh-----hc---CCCCEEEEECCeec
Confidence 98765434432 332221 124677776655432 22 35789999999974
Q ss_pred ccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
....-.++-++..+++++++-+.+.. ...+.|++... .+| .|+++.|
T Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~d-~~~--~v~~~~e 155 (217)
T cd04181 109 -DLDLSELLRFHREKGADATIAVKEVE-DPSRYGVVELD-DDG--RVTRFVE 155 (217)
T ss_pred -CcCHHHHHHHHHhcCCCEEEEEEEcC-CCCcceEEEEc-CCC--cEEEEEE
Confidence 44444577778888888877666544 45566876653 234 3555554
No 34
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=1.4e-06 Score=83.21 Aligned_cols=158 Identities=22% Similarity=0.294 Sum_probs=112.0
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
.|+||||.||||. ...||.+.|| -+|+.+++-++.+.. .++. -+.|.++..+-...++
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV---~~KPmi~y~l~~L~~---------------aGI~-dI~II~~~~~~~~~~~ 63 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPV---YDKPMIYYPLETLML---------------AGIR-DILIVVGPEDKPTFKE 63 (286)
T ss_pred cEEecCcCccccccccccCCccccee---cCcchhHhHHHHHHH---------------cCCc-eEEEEecCCchhhhhh
Confidence 4899999999996 8889999999 889999999998763 1322 3578888888899999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+...||++ +++-.| .+|.|=+..+..- +++. |-+-+.++-.||++
T Consensus 64 llGdgs~~gv~---itY~~Q---------------------~~p~GlA~Av~~a------~~fv--~~~~f~l~LGDNi~ 111 (286)
T COG1209 64 LLGDGSDFGVD---ITYAVQ---------------------PEPDGLAHAVLIA------EDFV--GDDDFVLYLGDNIF 111 (286)
T ss_pred hhcCccccCcc---eEEEec---------------------CCCCcHHHHHHHH------Hhhc--CCCceEEEecCcee
Confidence 99999999985 555554 4578888777633 2332 44667888899998
Q ss_pred ccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCC-eEEEEecCCCh
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGP-LTVVEYSELDP 333 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~-~~vvEYsel~~ 333 (360)
-. .-..++--+.+...+..+-+.+-.+ -++.||+... .+|+ ..++|=.+.|+
T Consensus 112 ~~-~l~~~~~~~~~~~~ga~i~~~~V~d-P~rfGV~e~d-~~~~v~~l~EKP~~P~ 164 (286)
T COG1209 112 QD-GLSELLEHFAEEGSGATILLYEVDD-PSRYGVVEFD-EDGKVIGLEEKPKEPK 164 (286)
T ss_pred cc-ChHHHHHHHhccCCCcEEEEEEcCC-cccceEEEEc-CCCcEEEeEECCCCCC
Confidence 77 5556776666544444332222224 4788988775 3453 45577666555
No 35
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.55 E-value=2e-06 Score=87.72 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=92.2
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
.+.+|+||||.||||+.+.||.++|+ .+|+++++.++.+.+ .+ +.-++++..+..+.+.+
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~~--~~~iivv~~~~~~~i~~ 64 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTL---LGEPMLRFVYRALRP---------------LF--GDNVWTVVGHRADMVRA 64 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceeccc---CCCcHHHHHHHHHHh---------------cC--CCcEEEEECCCHHHHHH
Confidence 58899999999999998889999998 799999999887642 12 22233344455677777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
+|.+. ++.+..| ..|.|.|+..... ++.+.+.+.+++.+.+.|.++
T Consensus 65 ~~~~~--------~~~~v~~---------------------~~~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~ 110 (456)
T PRK14356 65 AFPDE--------DARFVLQ---------------------EQQLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPL 110 (456)
T ss_pred hcccc--------CceEEEc---------------------CCCCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCccc
Confidence 76431 1222221 1246666544332 334444456899999999976
Q ss_pred ccccCH-HHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCe-EEEEecCCC
Q 018126 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELD 332 (360)
Q Consensus 279 ~~~~DP-~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~-~vvEYsel~ 332 (360)
....+- .++..+ .++++++-+.+-.+| ...|++.. + +|+. .++|-..++
T Consensus 111 i~~~~i~~li~~~--~~~~~~l~~~~~~~~-~~~g~v~~-~-~g~V~~~~ek~~~~ 161 (456)
T PRK14356 111 VTTDTIDDFLKEA--AGADLAFMTLTLPDP-GAYGRVVR-R-NGHVAAIVEAKDYD 161 (456)
T ss_pred CCHHHHHHHHHHH--hcCCEEEEEEEcCCC-CCceEEEE-c-CCeEEEEEECCCCC
Confidence 332211 133332 255655444444444 45687755 2 5643 335544443
No 36
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.55 E-value=3.8e-06 Score=82.93 Aligned_cols=142 Identities=23% Similarity=0.310 Sum_probs=96.0
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+ ...||.++|+ .+++++++.++.+.+ .+. -..+|+|+....+.+.+
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv---~g~pli~~~l~~l~~---------------~gi-~~i~vv~~~~~~~~i~~ 62 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPV---ANKPILQYAIEDLAE---------------AGI-TDIGIVVGPVTGEEIKE 62 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEE---CCEeHHHHHHHHHHH---------------CCC-CEEEEEeCCCCHHHHHH
Confidence 5899999999997 4789999999 789999998887653 121 13566777668899999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+...|+++ +.+..| ..|.|.++.+.+... .+ . + +.+.+.+.|+++
T Consensus 63 ~~~~~~~~~~~---~~~~~~---------------------~~~~G~~~al~~a~~-----~l-~-~-~~~li~~gD~~~ 110 (353)
T TIGR01208 63 IVGEGERFGAK---ITYIVQ---------------------GEPLGLAHAVYTARD-----FL-G-D-DDFVVYLGDNLI 110 (353)
T ss_pred HHhcccccCce---EEEEEC---------------------CCCCCHHHHHHHHHH-----hc-C-C-CCEEEEECCeec
Confidence 99875556653 333322 125788776665432 22 1 1 335566789986
Q ss_pred ccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEE
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVR 316 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~ 316 (360)
...--.++-.|..+++++++-+.+..+| +..|++..
T Consensus 111 -~~~l~~l~~~~~~~~~d~ti~~~~~~~~-~~~g~~~~ 146 (353)
T TIGR01208 111 -QDGISRFVKSFEEKDYDALILLTKVRDP-TAFGVAVL 146 (353)
T ss_pred -CccHHHHHHHHHhcCCCcEEEEEECCCh-hhCeEEEE
Confidence 4333457788888888887666655544 45687665
No 37
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.53 E-value=4e-06 Score=86.67 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=95.6
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++.+|+||||.||||+...||.++|+ .+++++++.++++.+ .+ +.-+++...+..+.+++
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi---~gkpli~~~l~~l~~---------------~g--i~~ivvv~~~~~~~i~~ 66 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPV---AGRPMVAWAVKAARD---------------LG--ARKIVVVTGHGAEQVEA 66 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEE---CCeeHHHHHHHHHHh---------------CC--CCeEEEEeCCCHHHHHH
Confidence 68899999999999998889999999 789999998887753 12 22334444566778888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
+|+. . .+.+..| ..|.|.|+.+..-. +.+. ..-+.+++.+.|+++
T Consensus 67 ~~~~---~-----~i~~v~~---------------------~~~~Gt~~al~~~~-----~~l~-~~~~~~lV~~gD~P~ 111 (481)
T PRK14358 67 ALQG---S-----GVAFARQ---------------------EQQLGTGDAFLSGA-----SALT-EGDADILVLYGDTPL 111 (481)
T ss_pred Hhcc---C-----CcEEecC---------------------CCcCCcHHHHHHHH-----HHhh-CCCCcEEEEeCCeec
Confidence 8852 1 1333221 12567777654432 2232 222346788999976
Q ss_pred ccccCH-HHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCe-EEEEe
Q 018126 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEY 328 (360)
Q Consensus 279 ~~~~DP-~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~-~vvEY 328 (360)
....+- .++-++.+.++++++-+.+..+ ..+.|++... .+|+. .++|.
T Consensus 112 i~~~~l~~ll~~~~~~~~~~ti~~~~~~~-~~~yG~v~~d-~~g~v~~~~Ek 161 (481)
T PRK14358 112 LRPDTLRALVADHRAQGSAMTILTGELPD-ATGYGRIVRG-ADGAVERIVEQ 161 (481)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEEEcCC-CCCceEEEEC-CCCCEEEEEEC
Confidence 433222 3566677778777655444433 3457988764 34542 34444
No 38
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.52 E-value=3.3e-06 Score=82.34 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=121.5
Q ss_pred CCEEEEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchH
Q 018126 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (360)
..|+.++|.||-||||. ...||++.|++ +|.++.++++.+.. .++. ..|+.|+..-.+
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg---n~pmI~hqieal~n---------------sGi~-~I~la~~y~s~s 68 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG---NKPMILHQIEALIN---------------SGIT-KIVLATQYNSES 68 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccC---cchhhHHHHHHHHh---------------CCCc-EEEEEEecCcHH
Confidence 37999999999999986 88899998885 89999999987663 2322 467777766655
Q ss_pred HHHHHHhhc-CCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEc
Q 018126 195 ATRKYFEGH-KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (360)
Q Consensus 195 ~t~~~f~~~-~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~ 273 (360)
..+.+.+.+ ..||+ .|.+ .| .+-|.|.-|...+.++. |...... -++|.|
T Consensus 69 l~~~~~k~y~~~lgV---ei~~-s~--------------------eteplgtaGpl~laR~~--L~~~~~~---~ffVLn 119 (371)
T KOG1322|consen 69 LNRHLSKAYGKELGV---EILA-ST--------------------ETEPLGTAGPLALARDF--LWVFEDA---PFFVLN 119 (371)
T ss_pred HHHHHHHHhhhccce---EEEE-Ee--------------------ccCCCcccchHHHHHHH--hhhcCCC---cEEEec
Confidence 666666653 24553 2332 22 12278888988887653 3332221 578999
Q ss_pred CCCccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCCChHHHh
Q 018126 274 VDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLAS 337 (360)
Q Consensus 274 vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~~ 337 (360)
.|-+ ++..--.|+-+|..++++.++-|.+-.. ..+.|++.... +.-+|..++|=|+++..
T Consensus 120 sDvi-~~~p~~~~vqfH~~~gae~TI~~t~vde-pSkyGvv~~d~--~~grV~~F~EKPkd~vs 179 (371)
T KOG1322|consen 120 SDVI-CRMPYKEMVQFHRAHGAEITIVVTKVDE-PSKYGVVVIDE--DTGRVIRFVEKPKDLVS 179 (371)
T ss_pred CCee-ecCCHHHHHHHHHhcCCceEEEEEeccC-ccccceEEEec--CCCceeEehhCchhhhh
Confidence 9986 7888888999999999999888777654 67889998763 24468899999887654
No 39
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.52 E-value=3.4e-06 Score=85.16 Aligned_cols=149 Identities=22% Similarity=0.303 Sum_probs=99.1
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++.+|+||||.||||+...||.++|+ .+++++++.++.+++. . -..+|+++ +..+.+.+
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi---~gkPli~~~i~~l~~~---------------~--~~i~Ivv~-~~~~~i~~ 60 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI---CGKPMLFYILKEAFAI---------------S--DDVHVVLH-HQKERIKE 60 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE---CCccHHHHHHHHHHHc---------------C--CcEEEEEC-CCHHHHHH
Confidence 46789999999999998889999999 8999999999987631 0 12345554 56788899
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+. ++ .+.+..|+ ...+.|.|+.+..+. ..-+++.+.+.|+++
T Consensus 61 ~~~~~--~~----~v~~~~~~-------------------~~~~~gt~~al~~~~----------~~~d~vlv~~gD~p~ 105 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQD-------------------LENYPGTGGALMGIE----------PKHERVLILNGDMPL 105 (430)
T ss_pred HHHhc--CC----ceEEEEec-------------------CccCCCcHHHHhhcc----------cCCCeEEEEECCccC
Confidence 98752 21 24444331 122467777665421 124789999999986
Q ss_pred ccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCe-EEEEec
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYS 329 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~-~vvEYs 329 (360)
.++..+-.+.+.++++++-+.+..+|. ..|++... +|+. .++|..
T Consensus 106 ---~~~~~l~~l~~~~~~~~v~~~~~~~~~-~~g~v~~d--~g~v~~i~e~~ 151 (430)
T PRK14359 106 ---VEKDELEKLLENDADIVMSVFHLADPK-GYGRVVIE--NGQVKKIVEQK 151 (430)
T ss_pred ---CCHHHHHHHHhCCCCEEEEEEEcCCCc-cCcEEEEc--CCeEEEEEECC
Confidence 367777777777788766665554543 46776542 4532 334443
No 40
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=2.9e-06 Score=85.29 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=128.9
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
.+.+|+||-|+||||.++.||-+.|+ .|||++++-++....+. ..-++..-++-.+..++
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v---aGkpMl~hVi~~a~~l~-----------------~~~i~vVvGh~ae~V~~ 61 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV---AGKPMLEHVIDAARALG-----------------PDDIVVVVGHGAEQVRE 61 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc---cCccHHHHHHHHHhhcC-----------------cceEEEEEcCCHHHHHH
Confidence 57899999999999999999999999 99999999887665321 22345667888899999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCe-EEEEEcCCCc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIK-YIDCYGVDNA 277 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~-yi~v~~vDN~ 277 (360)
-+.+.. ++.|+.|.. |.|.|....+... .+..+.+ .+.|.+.|-+
T Consensus 62 ~~~~~~-------~v~~v~Q~e---------------------qlGTgHAV~~a~~------~l~~~~~g~vLVl~GD~P 107 (460)
T COG1207 62 ALAERD-------DVEFVLQEE---------------------QLGTGHAVLQALP------ALADDYDGDVLVLYGDVP 107 (460)
T ss_pred Hhcccc-------CceEEEecc---------------------cCChHHHHHhhhh------hhhcCCCCcEEEEeCCcc
Confidence 987532 467887732 5889988776633 3344555 7899999999
Q ss_pred cccccCHH--HHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCC-eEEEEecCCChHHHhhcccCCCceeeec
Q 018126 278 LVRVADPT--FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGP-LTVVEYSELDPSLASAINQETGRLRFCW 350 (360)
Q Consensus 278 L~~~~DP~--flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~-~~vvEYsel~~~~~~~~~~~~g~l~f~~ 350 (360)
|.. .+.+ ++.++...++.+++-...-.+|. -.|-|++.+ +|+ .++||.-+-+++.++-..-++|-+.|..
T Consensus 108 Lit-~~TL~~L~~~~~~~~~~~tvLt~~~~dP~-GYGRIvr~~-~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~ 180 (460)
T COG1207 108 LIT-AETLEELLAAHPAHGAAATVLTAELDDPT-GYGRIVRDG-NGEVTAIVEEKDASEEEKQIKEINTGIYAFDG 180 (460)
T ss_pred cCC-HHHHHHHHHhhhhcCCceEEEEEEcCCCC-CcceEEEcC-CCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcH
Confidence 844 3333 77888778888877777766765 457787753 554 7899999999998765444567666653
No 41
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.51 E-value=3.9e-06 Score=76.65 Aligned_cols=150 Identities=21% Similarity=0.397 Sum_probs=95.3
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+ ...||+++|+ .+++++++.++.+.. .+ +.-+++...+..+.+++
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~---~g~pli~~~l~~l~~---------------~~--~~~iivv~~~~~~~i~~ 60 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKV---GGKPILETIIDRFIA---------------QG--FRNFYISVNYLAEMIED 60 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeE---CCcchHHHHHHHHHH---------------CC--CcEEEEECccCHHHHHH
Confidence 5899999999997 4789999999 889999998887763 12 33345555566788889
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+...++++ +.+..| ..|.|.|+.+..+... .-+.+.+.+.|++.
T Consensus 61 ~~~~~~~~~~~---i~~~~~---------------------~~~~g~~~~l~~~~~~---------~~~~~lv~~~D~i~ 107 (220)
T cd06426 61 YFGDGSKFGVN---ISYVRE---------------------DKPLGTAGALSLLPEK---------PTDPFLVMNGDILT 107 (220)
T ss_pred HHCCccccCcc---EEEEEC---------------------CCCCcchHHHHHHHhh---------CCCCEEEEcCCEee
Confidence 98764334432 222211 1346777776544321 14678888899764
Q ss_pred ccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
...--.++-.+...+.++++-+.+.. +....|++.. + +| .|+++.|
T Consensus 108 -~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~-d-~~--~v~~~~e 153 (220)
T cd06426 108 -NLNYEHLLDFHKENNADATVCVREYE-VQVPYGVVET-E-GG--RITSIEE 153 (220)
T ss_pred -ccCHHHHHHHHHhcCCCEEEEEEEcC-CCCcceEEEE-C-CC--EEEEEEE
Confidence 43334467777777888776555533 4455565543 2 33 4555543
No 42
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=98.51 E-value=5.4e-06 Score=75.33 Aligned_cols=152 Identities=20% Similarity=0.310 Sum_probs=93.8
Q ss_pred EEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+. ..||.++|+ .+++++++.++.+.+ .+ +.-++++.++..+.+.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i---~g~pli~~~l~~l~~---------------~g--~~~v~vv~~~~~~~i~~ 60 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV---AGRPFLEYLLEYLAR---------------QG--ISRIVLSVGYLAEQIEE 60 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE---CCcchHHHHHHHHHH---------------CC--CCEEEEEcccCHHHHHH
Confidence 48999999999974 579999999 689999998887653 12 33445555667788999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.....+|.. +.+.. ...+.|.++.+.... +.+ +-+++.+.+.|+++
T Consensus 61 ~~~~~~~~~~~---~~~~~---------------------~~~~~G~~~~l~~a~-----~~~---~~~~~lv~~~D~~~ 108 (223)
T cd06915 61 YFGDGYRGGIR---IYYVI---------------------EPEPLGTGGAIKNAL-----PKL---PEDQFLVLNGDTYF 108 (223)
T ss_pred HHcCccccCce---EEEEE---------------------CCCCCcchHHHHHHH-----hhc---CCCCEEEEECCccc
Confidence 98753323321 22111 123567775443322 222 23678999999975
Q ss_pred ccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
...--.++-.+.+.+.++++-+.+...+ ...|++.. +.+| .|+++.+
T Consensus 109 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~v~~-d~~~--~v~~~~e 155 (223)
T cd06915 109 -DVDLLALLAALRASGADATMALRRVPDA-SRYGNVTV-DGDG--RVIAFVE 155 (223)
T ss_pred -CCCHHHHHHHHHhCCCcEEEEEEECCCC-CcceeEEE-CCCC--eEEEEEe
Confidence 3222235555666778887776665443 45676643 3344 3555555
No 43
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=98.50 E-value=4.3e-06 Score=78.81 Aligned_cols=164 Identities=20% Similarity=0.263 Sum_probs=100.5
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||. .+.||.++|+ .+++++++.++.+.+ .+ |.-++....+..+.+++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv---~~~p~i~~~~~~~~~---------------~g--i~~i~iv~~~~~~~i~~ 60 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEI---GGRPILWHIMKIYSH---------------YG--HNDFILCLGYKGHVIKE 60 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEE---CCEEHHHHHHHHHHh---------------CC--CceEEEECCCCHHHHHH
Confidence 4889999999996 4789999999 789999886665542 12 44566666788899999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccc----cCCCcc----cccCCCChhHhHHHhhCcHHHHHHHCCCeEEE
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIM----ETPYKV----AKAPDGNGGVYSALKSSKLLEDMATRGIKYID 270 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l----~~~~~i----~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~ 270 (360)
|+++...+|.+ +.+-.| .+++.. .+++.+ ...|.|+||.+....+ .+ .. -+++.
T Consensus 61 ~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~-----~~-~~-~~~~l 122 (253)
T cd02524 61 YFLNYFLHNSD---VTIDLG--------TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRR-----YL-GD-DETFM 122 (253)
T ss_pred HHHhhhhhcCc---eeEeec--------ccceeeecccccccceeecccCcccccHHHHHHHHH-----hc-CC-CCeEE
Confidence 99875444432 222111 111100 011221 1236778776554422 12 11 17899
Q ss_pred EEcCCCccccccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 271 CYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 271 v~~vDN~L~~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
+.+.|++. ...--.++-+|...++++++.++. +....|++... .+|+ |.++.+
T Consensus 123 v~~gD~i~-~~dl~~ll~~h~~~~~~~tl~~~~---~~~~~g~v~~d-~~g~--V~~~~e 175 (253)
T cd02524 123 LTYGDGVS-DVNINALIEFHRSHGKLATVTAVH---PPGRFGELDLD-DDGQ--VTSFTE 175 (253)
T ss_pred EEcCCEEE-CCCHHHHHHHHHHcCCCEEEEEec---CCCcccEEEEC-CCCC--EEEEEE
Confidence 99999985 333355777788888888765553 34566886553 3454 444443
No 44
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.47 E-value=7e-06 Score=84.65 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=96.1
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
.+++|+||||.||||+.+.||.++|+ .+|+++++.++++.+. +. -+++|.++ +..+.+.+
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi---~gkpli~~~l~~l~~~---------------g~-~~iivvv~-~~~~~i~~ 63 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTL---AGRSMLGHVLHAAAGL---------------AP-QHLVVVVG-HDRERVAP 63 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceecee---CCccHHHHHHHHHHhc---------------CC-CcEEEEEC-CCHHHHHH
Confidence 57889999999999998889999999 6899999999987631 21 24555555 45677888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++++. +. .+.+..| ..|.|.|+...+. ++.+.+..-++++|++.|+++
T Consensus 64 ~~~~~---~~---~~~~~~~---------------------~~~~Gt~~si~~a-----l~~l~~~~~~~vlV~~gD~P~ 111 (482)
T PRK14352 64 AVAEL---AP---EVDIAVQ---------------------DEQPGTGHAVQCA-----LEALPADFDGTVVVTAGDVPL 111 (482)
T ss_pred Hhhcc---CC---ccEEEeC---------------------CCCCCcHHHHHHH-----HHHhccCCCCeEEEEeCCeec
Confidence 88642 11 1222221 2246766643332 122322234678999999986
Q ss_pred ccccCH-HHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCe-EEEEecCCC
Q 018126 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELD 332 (360)
Q Consensus 279 ~~~~DP-~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~-~vvEYsel~ 332 (360)
....+- .++-.+...++++.+-+.+..+ ....|.+... .+|+. .++|....+
T Consensus 112 ~~~~~l~~li~~~~~~~~~~~v~~~~~~~-p~~yg~~~~~-~~g~V~~~~EKp~~~ 165 (482)
T PRK14352 112 LDGETLADLVATHTAEGNAVTVLTTTLDD-PTGYGRILRD-QDGEVTAIVEQKDAT 165 (482)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEeecCC-CCCCCEEEEC-CCCCEEEEEECCCCC
Confidence 332221 2455555566666544433333 3457877653 35653 446654443
No 45
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=98.46 E-value=4.4e-06 Score=75.90 Aligned_cols=139 Identities=15% Similarity=0.248 Sum_probs=90.9
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~k-sllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
+|+||||.||||. .+.||.++|+ .++ +++++.++.+.. .++. ..+|.|+ +..+.+.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~---------------~gi~-~iivv~~-~~~~~i~ 60 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPF---GGRYRLIDFPLSNMVN---------------SGIR-NVGVLTQ-YKSRSLN 60 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEE---CCeeeeHHHHHHHHHH---------------CCCC-EEEEEeC-CChHHHH
Confidence 4889999999996 4789999999 687 999998887763 1221 2455555 5588899
Q ss_pred HHHhhcCCCCCCCC--cEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCC
Q 018126 198 KYFEGHKYFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (360)
Q Consensus 198 ~~f~~~~~FGl~~~--~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vD 275 (360)
++|.+...||++.. .+.+... ........|.|.|+....... .+....-+.+.+.+.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD 120 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFILPP---------------QQRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGD 120 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEeCc---------------ccCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCC
Confidence 99987666776421 1221110 000012357899987766533 2333334788899999
Q ss_pred CccccccCHHHHHHHHHcCCceEEEE
Q 018126 276 NALVRVADPTFLGYFIDKGVSAGAKV 301 (360)
Q Consensus 276 N~L~~~~DP~flG~~~~~~~~~~~kv 301 (360)
++ ....--.++-++.++++++++-+
T Consensus 121 ~v-~~~~~~~~l~~~~~~~~~~t~~~ 145 (200)
T cd02508 121 HI-YNMDYREMLDFHIESGADITVVY 145 (200)
T ss_pred EE-EecCHHHHHHHHHHcCCCEEEEE
Confidence 96 34444457888888887776543
No 46
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=98.42 E-value=6.4e-06 Score=77.57 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=88.5
Q ss_pred EEEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 121 AVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 121 avvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
-+|+||||.||||+. ..||.++|+ .+++++++.++.+.. .++. ..+|+|. +..+.+.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi---~g~pli~~~l~~l~~---------------~gi~-~v~iv~~-~~~~~i~ 61 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYVVEEAVE---------------AGIE-DILIVTG-RGKRAIE 61 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE---CCEEHHHHHHHHHHh---------------CCCC-EEEEEeC-CcHHHHH
Confidence 469999999999974 789999999 689999998886652 1221 2345554 5678899
Q ss_pred HHHhhcCCCCCC---CCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcC
Q 018126 198 KYFEGHKYFGLE---SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (360)
Q Consensus 198 ~~f~~~~~FGl~---~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~v 274 (360)
++|.+...++.. ...++.+.+-.. +.....+. ......|.|.|+.+.+... .+ +-+.+.+.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~----~~~~~~~~G~~~al~~~~~-----~~---~~~~~lv~~g 127 (260)
T TIGR01099 62 DHFDTSYELEHQLEKRGKEELLKEVRS--ISPLATIF----YVRQKEQKGLGHAVLCAEP-----FV---GDEPFAVILG 127 (260)
T ss_pred HHhcccHHHHHHHHhhhhHHHHHHhhh--ccccceEE----EEecCCCCCHHHHHHHHHH-----hh---CCCCEEEEec
Confidence 999742111000 000000000000 00000000 0112346788886655432 22 3356788889
Q ss_pred CCccccc--cCHHHHHHHHHcCCceE-EEEeecCCCCcccceEEE
Q 018126 275 DNALVRV--ADPTFLGYFIDKGVSAG-AKVVRKAYPQEKVGVFVR 316 (360)
Q Consensus 275 DN~L~~~--~DP~flG~~~~~~~~~~-~kvv~K~~p~E~vGvi~~ 316 (360)
|+++... .--.++-+|...++++. ...++.. ...+.|++..
T Consensus 128 D~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~g~v~~ 171 (260)
T TIGR01099 128 DDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKE-EVSKYGVIDG 171 (260)
T ss_pred cceecCCcHHHHHHHHHHHHhCCCEEEEEECChh-hcccCceEEe
Confidence 9986443 12347777777788752 2222222 2356688765
No 47
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.40 E-value=1.3e-05 Score=82.03 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=97.6
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++.+|+||||.||||+...||.+.|+ .+++++++.++.+.+ .++ -+.+|.|+ +..+.+.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi---~g~pli~~~l~~l~~---------------~gi-~~iiiv~~-~~~~~i~~ 62 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPL---AGRPMVSWPVAAARE---------------AGA-GRIVLVVG-HQAEKVRE 62 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceecee---CCccHHHHHHHHHHh---------------cCC-CeEEEEEC-CCHHHHHH
Confidence 57889999999999998889999999 689999998887653 121 13444444 55778888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
+|.+.. .+.+..| ..|.|.|+.+.+. ++.+ +..-+++.+.+.|+++
T Consensus 63 ~~~~~~-------~i~~~~~---------------------~~~~Gt~~al~~a-----~~~l-~~~~~~vlv~~gD~p~ 108 (459)
T PRK14355 63 HFAGDG-------DVSFALQ---------------------EEQLGTGHAVACA-----APAL-DGFSGTVLILCGDVPL 108 (459)
T ss_pred HhccCC-------ceEEEec---------------------CCCCCHHHHHHHH-----HHHh-hccCCcEEEEECCccC
Confidence 886421 2333222 1245777755443 2223 2224789999999975
Q ss_pred ccccC-HHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecC
Q 018126 279 VRVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSE 330 (360)
Q Consensus 279 ~~~~D-P~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYse 330 (360)
....| -.++-.+...++++++-+.+..+| ...|++... .+|+ |+++.|
T Consensus 109 ~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~-~~~g~v~~d-~~g~--v~~~~e 157 (459)
T PRK14355 109 LRAETLQGMLAAHRATGAAVTVLTARLENP-FGYGRIVRD-ADGR--VLRIVE 157 (459)
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEEEEcCCC-CcCCEEEEc-CCCC--EEEEEE
Confidence 44333 346666666777776655555455 456887543 3454 444443
No 48
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=98.39 E-value=1.7e-05 Score=76.09 Aligned_cols=163 Identities=18% Similarity=0.137 Sum_probs=97.9
Q ss_pred EEEEecCCCccccC----CCCCCCceeecCCCC-CccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHH
Q 018126 121 AVLLLSGGQGTRLG----SSDPKGCVNIGLPSG-KSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (360)
Q Consensus 121 avvlLAGG~GTRLg----~~~pKg~~~i~l~s~-ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (360)
-+|+||||.||||. ...||.++|+ .+ +|++|+.++++..+. ++ -.++|.|+....+.
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l---~g~~~li~~~l~~l~~~~--------------~~-~~i~vvt~~~~~~~ 63 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKL---FGDKSLLQQTLDRLKGLV--------------PP-DRILVVTNEEYRFL 63 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEc---CCCCcHHHHHHHHHhcCC--------------CC-CcEEEEechHHHHH
Confidence 46899999999995 4689999888 55 999999999876310 11 25678888766677
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHC-CCeEEEEEcC
Q 018126 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR-GIKYIDCYGV 274 (360)
Q Consensus 196 t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~-Gi~yi~v~~v 274 (360)
+++++++ ++ . .+.++.| ..|.|.|+...... ..+.++ +-+++.|.+.
T Consensus 64 v~~~l~~---~~-~--~~~ii~e---------------------p~~~gTa~ai~~a~-----~~~~~~~~~~~vlVl~~ 111 (274)
T cd02509 64 VREQLPE---GL-P--EENIILE---------------------PEGRNTAPAIALAA-----LYLAKRDPDAVLLVLPS 111 (274)
T ss_pred HHHHHhh---cC-C--CceEEEC---------------------CCCCCcHHHHHHHH-----HHHHhcCCCCeEEEecc
Confidence 8888865 11 1 1222221 22467777654432 122222 3478999999
Q ss_pred CCccccccCH-HHHHHHH---HcCCceEEEEeecCCCCcccceEEEEccC-C-CeEEEEecCCChH
Q 018126 275 DNALVRVADP-TFLGYFI---DKGVSAGAKVVRKAYPQEKVGVFVRRGKG-G-PLTVVEYSELDPS 334 (360)
Q Consensus 275 DN~L~~~~DP-~flG~~~---~~~~~~~~kvv~K~~p~E~vGvi~~~~~~-g-~~~vvEYsel~~~ 334 (360)
|.++....+- ..+--+. ..+..+++-+.+. .|....|.|...... | ...|..+.|=|+.
T Consensus 112 D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~-~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~ 176 (274)
T cd02509 112 DHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT-RPETGYGYIEAGEKLGGGVYRVKRFVEKPDL 176 (274)
T ss_pred hhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec-CCCCCeEEEEeCCcCCCCceEEeEEEECcCh
Confidence 9886311100 1222122 2566676666664 577888999764211 1 2356566555543
No 49
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.37 E-value=9.9e-06 Score=82.39 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=96.0
Q ss_pred EEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHH
Q 018126 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (360)
Q Consensus 121 avvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f 200 (360)
.+|+||||.||||+...||.+.|+ .+|+++++.++.+... . -..+|.|+ +..+.+.+++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v---~gkpli~~~l~~l~~~---------------~--~~i~vv~~-~~~~~i~~~~ 60 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKI---SGKPMINWVIDTAKKV---------------A--QKVGVVLG-HEAELVKKLL 60 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEE---CCeeHHHHHHHHHHhc---------------C--CcEEEEeC-CCHHHHHHhc
Confidence 479999999999998889999999 7899999988876531 1 12344444 4456777776
Q ss_pred hhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcccc
Q 018126 201 EGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 280 (360)
Q Consensus 201 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~~ 280 (360)
.+ .+.++.|+ .|.|.++.+..... .+. .-+++++.+.|+++..
T Consensus 61 ~~---------~~~~~~~~---------------------~~~g~~~ai~~a~~-----~l~--~~~~vlv~~gD~p~i~ 103 (448)
T PRK14357 61 PE---------WVKIFLQE---------------------EQLGTAHAVMCARD-----FIE--PGDDLLILYGDVPLIS 103 (448)
T ss_pred cc---------ccEEEecC---------------------CCCChHHHHHHHHH-----hcC--cCCeEEEEeCCcccCC
Confidence 52 12233321 24576665544322 221 1378999999997643
Q ss_pred ccC-HHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCeEEEEecCC
Q 018126 281 VAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSEL 331 (360)
Q Consensus 281 ~~D-P~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel 331 (360)
..| -.++-++.+.++++++-+.+..+| ...|++... +|+..++|...-
T Consensus 104 ~~~i~~l~~~~~~~~~d~ti~~~~~~~~-~~~g~v~~d--~g~v~~~e~~~~ 152 (448)
T PRK14357 104 ENTLKRLIEEHNRKGADVTILVADLEDP-TGYGRIIRD--GGKYRIVEDKDA 152 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEcCCC-CCcEEEEEc--CCeEEEEECCCC
Confidence 333 236677777788887766555444 456877543 576667776543
No 50
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.35 E-value=1.8e-05 Score=80.40 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=92.3
Q ss_pred EEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHH
Q 018126 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (360)
Q Consensus 120 vavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (360)
+++|+||||.||||+.+.||.++|+ .+|+++++.++.+.+. +. ...+|.+. +..+.+.++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~~---------------g~-~~iivvv~-~~~~~i~~~ 61 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL---GGKSLVERVLDSCEEL---------------KP-DRRLVIVG-HQAEEVEQS 61 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE---CChhHHHHHHHHHHhC---------------CC-CeEEEEEC-CCHHHHHHH
Confidence 6789999999999998889999999 7899999998877631 21 23445554 455677787
Q ss_pred HhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCccc
Q 018126 200 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 279 (360)
Q Consensus 200 f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~ 279 (360)
+++.. .+.+..|. .+.|.++.+.... +.+.. .-++++|+..|.++.
T Consensus 62 ~~~~~-------~i~~v~~~---------------------~~~G~~~sv~~~~-----~~l~~-~~~~vlV~~~D~P~i 107 (450)
T PRK14360 62 LAHLP-------GLEFVEQQ---------------------PQLGTGHAVQQLL-----PVLKG-FEGDLLVLNGDVPLL 107 (450)
T ss_pred hcccC-------CeEEEEeC---------------------CcCCcHHHHHHHH-----HHhhc-cCCcEEEEeCCcccc
Confidence 76421 23332211 2466666554432 22321 224678899999763
Q ss_pred cccC-HHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCe-EEEEecCC
Q 018126 280 RVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSEL 331 (360)
Q Consensus 280 ~~~D-P~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~-~vvEYsel 331 (360)
...+ -.++-.+...++++++-+.+..+|. ..|.+.. +.+|+. .++|...+
T Consensus 108 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-d~~g~v~~~~ek~~~ 159 (450)
T PRK14360 108 RPETLEALLNTHRSSNADVTLLTARLPNPK-GYGRVFC-DGNNLVEQIVEDRDC 159 (450)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEecCCCC-CccEEEE-CCCCCEEEEEECCCC
Confidence 3221 2245555566777765444444443 3677654 335542 34554433
No 51
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.34 E-value=9.9e-06 Score=80.09 Aligned_cols=165 Identities=15% Similarity=0.273 Sum_probs=96.7
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~k-sllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
+|+||||.||||+ .+.||.|+|+ .++ +++++.++.+.. .+ +.-++....+..+.+.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~ 60 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPF---GGKYRIIDFPLSNCIN---------------SG--IRRIGVLTQYKSHSLN 60 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccccee---cceeeEeeehhhhhhh---------------cC--CceEEEEeccChHHHH
Confidence 4899999999997 4689999999 788 799999887753 12 3334555556777899
Q ss_pred HHHhhcCCCCCCC---CcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcC
Q 018126 198 KYFEGHKYFGLES---DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (360)
Q Consensus 198 ~~f~~~~~FGl~~---~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~v 274 (360)
++|.+ .++++. ..+.++.. . ....-...|.|.|+...+.. +.+....-+++.+.+.
T Consensus 61 ~~~~~--~~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~g 119 (361)
T TIGR02091 61 RHIQR--GWDFDGFIDGFVTLLPA-----Q---------QRESGTDWYQGTADAVYQNL-----DLIEDYDPEYVLILSG 119 (361)
T ss_pred HHHHh--ccCccCccCCCEEEeCC-----c---------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecC
Confidence 99985 233321 11221110 0 00001223578887665432 2232222367899999
Q ss_pred CCccccccCHHHHHHHHHcCCceEEEEeecC-CCCcccceEEEEccCCCeEEEEecCC
Q 018126 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSEL 331 (360)
Q Consensus 275 DN~L~~~~DP~flG~~~~~~~~~~~kvv~K~-~p~E~vGvi~~~~~~g~~~vvEYsel 331 (360)
|++. ...-..++-.+..+++++.+-+.+.. ...+..|++... .+| .|.++.|=
T Consensus 120 D~l~-~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d-~~~--~v~~~~ek 173 (361)
T TIGR02091 120 DHIY-KMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVD-EDG--RIVDFEEK 173 (361)
T ss_pred CEEE-cCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEEC-CCC--CEEEEEEC
Confidence 9963 43333466677777776654433321 123567888763 234 35566553
No 52
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.30 E-value=3e-05 Score=71.42 Aligned_cols=133 Identities=12% Similarity=0.150 Sum_probs=85.6
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+ .+.||.++|+ .+++++++.++.+.+. ++. ..+|.++....+.+++
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv---~g~pli~~~l~~l~~~---------------g~~-~iivv~~~~~~~~i~~ 63 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPV---ANKPMIWYPLDWLEKA---------------GFE-DVIVVVPEEEQAEIST 63 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEE---CCeeHHHHHHHHHHHC---------------CCC-eEEEEECHHHHHHHHH
Confidence 5789999999997 4789999999 6899999988877631 211 2456665555567888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++++.. ..........+. ....+.|.|+........ + .+.+.+.+.|.+
T Consensus 64 ~l~~~~-~~~~~~~~~~~~--------------------~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i- 112 (214)
T cd04198 64 YLRSFP-LNLKQKLDEVTI--------------------VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLI- 112 (214)
T ss_pred HHHhcc-cccCcceeEEEe--------------------cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCccc-
Confidence 887532 011100011111 123468999998887553 1 255788888865
Q ss_pred ccccCHHHHHHHHHcCCceEEEEeec
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVRK 304 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~K 304 (360)
....--.++-.+...++.+++-+.+.
T Consensus 113 ~~~~l~~~l~~h~~~~~~~t~~~~~~ 138 (214)
T cd04198 113 TDLPLIELVDLHRSHDASLTVLLYPP 138 (214)
T ss_pred cccCHHHHHHHHhccCCcEEEEEecc
Confidence 34443457777888888887655543
No 53
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=98.30 E-value=1.9e-05 Score=72.83 Aligned_cols=123 Identities=18% Similarity=0.254 Sum_probs=81.3
Q ss_pred EEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.||||+. ..||.++|+ .+++++++.++.+.+ .+ +.-++++..+..+.+.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~---~g~~li~~~l~~l~~---------------~g--i~~i~vv~~~~~~~~~~ 60 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEI---NGKPLLERQIETLKE---------------AG--IDDIVIVTGYKKEQIEE 60 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeE---CCEEHHHHHHHHHHH---------------CC--CceEEEEeccCHHHHHH
Confidence 48999999999973 569999999 689999998887653 12 32344444567888888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+. +| +.+..+. ...|.|.++.+.+.. +.+ -+++++.+.|++.
T Consensus 61 ~~~~~--~~-----~~~~~~~-------------------~~~~~g~~~s~~~~~-----~~~----~~~~lv~~~D~~~ 105 (229)
T cd02523 61 LLKKY--PN-----IKFVYNP-------------------DYAETNNIYSLYLAR-----DFL----DEDFLLLEGDVVF 105 (229)
T ss_pred HHhcc--CC-----eEEEeCc-------------------chhhhCcHHHHHHHH-----HHc----CCCEEEEeCCEec
Confidence 88753 22 2222211 112567766554432 222 2689999999963
Q ss_pred ccccCHHHHHHHHHcCCceEEEEee
Q 018126 279 VRVADPTFLGYFIDKGVSAGAKVVR 303 (360)
Q Consensus 279 ~~~~DP~flG~~~~~~~~~~~kvv~ 303 (360)
++-++-.+.+.+.++++-+.+
T Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~ 126 (229)
T cd02523 106 ----DPSILERLLSSPADNAILVDK 126 (229)
T ss_pred ----CHHHHHHHHcCCCCCeEEEcc
Confidence 456777788888887765554
No 54
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=98.29 E-value=2.2e-05 Score=76.61 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=93.3
Q ss_pred EEEEEecCCCccccCC---CCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHH
Q 018126 120 LAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (360)
Q Consensus 120 vavvlLAGG~GTRLg~---~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t 196 (360)
..+|++|||.||||.. ..||.++|+ .+++++++.++.+.. .+ |--++....+..+.+
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv---~g~pii~~~l~~l~~---------------~g--i~~i~vv~~~~~~~i 68 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIA---------------AG--ITEIVLVTHSSKNSI 68 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEeCCCHHHH
Confidence 5579999999999964 689999999 789999998887663 12 334555666778999
Q ss_pred HHHHhhcCCCC--CCCC-cEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEc
Q 018126 197 RKYFEGHKYFG--LESD-QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (360)
Q Consensus 197 ~~~f~~~~~FG--l~~~-~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~ 273 (360)
.++|.....++ +++. +..+ .++.-........+ .......|.|.|+.+..... +. +-+-+.+.+
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~-~~e~~~i~~~~~~i----~~~~q~~~~Gtg~Av~~a~~------~~--~~~~~lVl~ 135 (302)
T PRK13389 69 ENHFDTSFELEAMLEKRVKRQL-LDEVQSICPPHVTI----MQVRQGLAKGLGHAVLCAHP------VV--GDEPVAVIL 135 (302)
T ss_pred HHHHccchhhhhhhhhhhhhHH-HHhhhhccccCceE----EEeecCCCCChHHHHHHHHH------Hc--CCCCEEEEe
Confidence 99997432222 1110 0000 00000000000000 00112457899887665432 11 224567778
Q ss_pred CCCccc-------cccCHHHHHHHHHcCCceEEEEeecCCCCcccceEEEE
Q 018126 274 VDNALV-------RVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR 317 (360)
Q Consensus 274 vDN~L~-------~~~DP~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~ 317 (360)
.||++. ...--.++-+|.+.+++. +-+.+... ....|++...
T Consensus 136 gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~t-l~~~~~~~-~~~yGvv~~~ 184 (302)
T PRK13389 136 PDVILDEYESDLSQDNLAEMIRRFDETGHSQ-IMVEPVAD-VTAYGVVDCK 184 (302)
T ss_pred CcceecccccccccccHHHHHHHHHhcCCCE-EEEEEccc-CCcceEEEec
Confidence 999852 122235778887777763 33333333 4567988763
No 55
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.22 E-value=4.4e-05 Score=77.63 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=87.2
Q ss_pred CCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
.++.+|+||||.||||+...||.+.|+ .+|+++++.++.+.+ .++ -..+|.+ .+..+.+.
T Consensus 4 ~~~~aiILAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~---------------~gi-~~ivvv~-~~~~~~i~ 63 (446)
T PRK14353 4 RTCLAIILAAGEGTRMKSSLPKVLHPV---AGRPMLAHVLAAAAS---------------LGP-SRVAVVV-GPGAEAVA 63 (446)
T ss_pred ccceEEEEcCCCCCccCCCCCcccCEE---CCchHHHHHHHHHHh---------------CCC-CcEEEEE-CCCHHHHH
Confidence 368899999999999998789999999 789999999987753 121 1234444 45677788
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCc
Q 018126 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (360)
Q Consensus 198 ~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~ 277 (360)
+++.+ ++. .+.++.| ..|.|.++...+. ++.+ ..+-+++++.+.|.+
T Consensus 64 ~~~~~---~~~---~~~~~~~---------------------~~~~G~~~sl~~a-----~~~l-~~~~~~~lv~~~D~P 110 (446)
T PRK14353 64 AAAAK---IAP---DAEIFVQ---------------------KERLGTAHAVLAA-----REAL-AGGYGDVLVLYGDTP 110 (446)
T ss_pred HHhhc---cCC---CceEEEc---------------------CCCCCcHHHHHHH-----HHHH-hccCCCEEEEeCCcc
Confidence 88754 221 1222221 1245666544433 2223 223477888899997
Q ss_pred cccccCHHHHHHH---HHcCCceEEEEeecCCCCcccceEEE
Q 018126 278 LVRVADPTFLGYF---IDKGVSAGAKVVRKAYPQEKVGVFVR 316 (360)
Q Consensus 278 L~~~~DP~flG~~---~~~~~~~~~kvv~K~~p~E~vGvi~~ 316 (360)
+. ++..+--. .+.++++.+-+.+..++ .+.|.+..
T Consensus 111 ~i---~~~~l~~l~~~~~~~~~~~i~~~~~~~~-~~~g~~~~ 148 (446)
T PRK14353 111 LI---TAETLARLRERLADGADVVVLGFRAADP-TGYGRLIV 148 (446)
T ss_pred cC---CHHHHHHHHHhHhcCCcEEEEEEEeCCC-CcceEEEE
Confidence 63 34333222 24556666655554443 46677665
No 56
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.22 E-value=3e-05 Score=71.53 Aligned_cols=164 Identities=17% Similarity=0.150 Sum_probs=94.4
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+||||.|+||+ ...||.++|+ .+++++++.++.+.+ .++. ..+|++. ...+.+.+
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv---~g~pli~~~l~~l~~---------------~gi~-~i~vv~~-~~~~~~~~ 62 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPV---ANVPLIDYTLEWLEK---------------AGVE-EVFVVCC-EHSQAIIE 62 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceE---CCEEHHHHHHHHHHH---------------CCCC-eEEEEeC-CcHHHHHH
Confidence 5789999999996 4789999999 789999998886652 1211 2455555 45566777
Q ss_pred HHhhcCCCCCCC-CcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCc
Q 018126 199 YFEGHKYFGLES-DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (360)
Q Consensus 199 ~f~~~~~FGl~~-~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~ 277 (360)
++.+..+..... ..+.+. .. ....+.|.++........ + .+.+.+.+.|.+
T Consensus 63 ~~~~~~~~~~~~~~~v~~~---------------~~----~~~~~~Gta~~l~~~~~~--i-------~~dflv~~gD~i 114 (216)
T cd02507 63 HLLKSKWSSLSSKMIVDVI---------------TS----DLCESAGDALRLRDIRGL--I-------RSDFLLLSCDLV 114 (216)
T ss_pred HHHhcccccccCCceEEEE---------------Ec----cCCCCCccHHHHHHHhhc--C-------CCCEEEEeCCEe
Confidence 776543210000 001110 00 012367777766544321 2 256788889987
Q ss_pred cccccCHHHHHH--HHHcCCceEEEEeecCCC--------CcccceEEEEccCCCeEEEEecCCChH
Q 018126 278 LVRVADPTFLGY--FIDKGVSAGAKVVRKAYP--------QEKVGVFVRRGKGGPLTVVEYSELDPS 334 (360)
Q Consensus 278 L~~~~DP~flG~--~~~~~~~~~~kvv~K~~p--------~E~vGvi~~~~~~g~~~vvEYsel~~~ 334 (360)
. ...-..++-. ....+.++++.+.....+ .+.-++++...++++..++.|.+-+++
T Consensus 115 ~-~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 180 (216)
T cd02507 115 S-NIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180 (216)
T ss_pred e-cCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence 3 4443445533 334455554433332211 234477777644556888999886655
No 57
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=98.18 E-value=2.1e-05 Score=74.38 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=87.3
Q ss_pred EEEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 121 avvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
-+|+||||.||||. ...||.++|+ .+++++++.++.+.+ .+ +.-+++...+..+.+.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv---~gkpli~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~ 61 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPVIQYIVEEAVA---------------AG--IEDIIIVTGRGKRAIE 61 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEeCCchHHHH
Confidence 36899999999997 3679999999 689999998887653 12 3234555556778899
Q ss_pred HHHhhcCCCCCC---CCcEEEEE-cCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEc
Q 018126 198 KYFEGHKYFGLE---SDQVTFFQ-QGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (360)
Q Consensus 198 ~~f~~~~~FGl~---~~~v~~f~-Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~ 273 (360)
++|.+...+... .....++. =..+| ..-.+. ......|.|.|+.+.+... .+ .. +.+.+.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~----~~~~~~~~Gt~~al~~~~~-----~i-~~--~~~lv~~ 126 (267)
T cd02541 62 DHFDRSYELEETLEKKGKTDLLEEVRIIS---DLANIH----YVRQKEPLGLGHAVLCAKP-----FI-GD--EPFAVLL 126 (267)
T ss_pred HHhCCcHHHHHHHHhcccHHHhhhhhccc---CCceEE----EEEcCCCCChHHHHHHHHH-----Hh-CC--CceEEEE
Confidence 999642111000 00000000 00000 000000 0112346888877655432 22 21 5577888
Q ss_pred CCCccccccC---HHHHHHHHHcCCceE-EEEeecCCCCcccceEEEE
Q 018126 274 VDNALVRVAD---PTFLGYFIDKGVSAG-AKVVRKAYPQEKVGVFVRR 317 (360)
Q Consensus 274 vDN~L~~~~D---P~flG~~~~~~~~~~-~kvv~K~~p~E~vGvi~~~ 317 (360)
.|+++ ...| -.++-.|...++++. ..-++.. ...+.|++...
T Consensus 127 gD~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~v~~d 172 (267)
T cd02541 127 GDDLI-DSKEPCLKQLIEAYEKTGASVIAVEEVPPE-DVSKYGIVKGE 172 (267)
T ss_pred CCeEE-eCCchHHHHHHHHHHHhCCCEEEEEEcChh-cCccceEEEee
Confidence 89875 3333 346777766666642 2222211 23556876553
No 58
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.14 E-value=4.8e-05 Score=77.57 Aligned_cols=153 Identities=16% Similarity=0.229 Sum_probs=89.0
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++.+|+||||.||||+...||.++|+ .+|+++++.++++.+ .+ +.-++.+..+..+.+.+
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~ll~i---~Gkpli~~~l~~l~~---------------~g--i~~iivvv~~~~~~i~~ 61 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVLHKV---CGKPMVEHVVDSVKK---------------AG--IDKIVTVVGHGAEEVKE 61 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhhCEe---CCccHHHHHHHHHHh---------------CC--CCeEEEEeCCCHHHHHH
Confidence 45789999999999998889999999 789999998887752 12 22233343455667777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+. +.+.. ...+.|.++.+.... +.+ +..-+++++++.|+++
T Consensus 62 ~~~~~---------~~~~~---------------------~~~~~g~~~al~~a~-----~~l-~~~~d~vlv~~~D~p~ 105 (458)
T PRK14354 62 VLGDR---------SEFAL---------------------QEEQLGTGHAVMQAE-----EFL-ADKEGTTLVICGDTPL 105 (458)
T ss_pred HhcCC---------cEEEE---------------------cCCCCCHHHHHHHHH-----HHh-cccCCeEEEEECCccc
Confidence 76531 11111 012456665444332 223 2212689999999976
Q ss_pred ccccC-HHHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCCe-EEEEec
Q 018126 279 VRVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYS 329 (360)
Q Consensus 279 ~~~~D-P~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~~-~vvEYs 329 (360)
....| -.++-++...+++.++-+.+..+| ...|++... .+|+. .++|..
T Consensus 106 i~~~~l~~li~~~~~~~~~~t~~~~~~~~~-~~~g~v~~d-~~~~V~~~~ek~ 156 (458)
T PRK14354 106 ITAETLKNLIDFHEEHKAAATILTAIAENP-TGYGRIIRN-ENGEVEKIVEQK 156 (458)
T ss_pred cCHHHHHHHHHHHHhcCCceEEEEEEcCCC-CCceEEEEc-CCCCEEEEEECC
Confidence 44332 225555555566665444333333 346766543 34542 334443
No 59
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=98.11 E-value=8.8e-05 Score=68.86 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=78.1
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++.+|++|||.++||+ ||.++|+ .||+++++.++++.+. .+ +.-+++.+. ++.+.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i---~gkpll~~~l~~l~~~--------------~~--i~~ivvv~~--~~~i~~ 56 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI---AGKPMIQHVYERAKKA--------------KG--LDEVVVATD--DERIAD 56 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc---CCcCHHHHHHHHHHhC--------------CC--CCEEEEECC--cHHHHH
Confidence 4678999999999995 7999988 7999999999987631 02 233444443 478888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+ +++ .+..+ . ...+.|.|++..++.. + ....+++.+.+.|+++
T Consensus 57 ~~~~---~~~-----~~~~~---------------~----~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pl 102 (239)
T cd02517 57 AVES---FGG-----KVVMT---------------S----PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPL 102 (239)
T ss_pred HHHH---cCC-----EEEEc---------------C----cccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCC
Confidence 8864 332 12111 0 0124677776665532 2 1124789999999987
Q ss_pred ccccC-HHHHHHHHHc-CCceEEEEeecC
Q 018126 279 VRVAD-PTFLGYFIDK-GVSAGAKVVRKA 305 (360)
Q Consensus 279 ~~~~D-P~flG~~~~~-~~~~~~kvv~K~ 305 (360)
....+ -.++-.+... ++++++-+++..
T Consensus 103 i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 131 (239)
T cd02517 103 IPPEMIDQVVAALKDDPGVDMATLATPIS 131 (239)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEEEEcC
Confidence 43222 1233333333 566655555443
No 60
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.11 E-value=5e-05 Score=70.80 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=88.6
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++++|+||||.++||+ +|.+.|+ .||+++++.++.+.+. + +.-+++.+. ++.+.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i---~Gkpll~~~l~~l~~~---------------~--i~~ivvv~~--~~~i~~ 56 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI---GGKPMIVRVYERASKA---------------G--ADRVVVATD--DERIAD 56 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc---CCcCHHHHHHHHHHhc---------------C--CCeEEEECC--cHHHHH
Confidence 5889999999999995 7999988 8999999999987631 1 223344443 477888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+ +|.+ +.+..| ..+.|.+++..++.. +...+-.++.+++.|+++
T Consensus 57 ~~~~---~~~~---v~~~~~---------------------~~~~gt~~~~~~~~~------~~~~~~~~vlv~~~D~Pl 103 (245)
T PRK05450 57 AVEA---FGGE---VVMTSP---------------------DHPSGTDRIAEAAAK------LGLADDDIVVNVQGDEPL 103 (245)
T ss_pred HHHH---cCCE---EEECCC---------------------cCCCchHHHHHHHHh------cCCCCCCEEEEecCCCCC
Confidence 8864 3431 221111 114566665554432 211234678999999987
Q ss_pred ccccCH-HHHHHHHHcCCceEEEEeecC-----CCCcccceEEEEccCCCeEEEEecCCC
Q 018126 279 VRVADP-TFLGYFIDKGVSAGAKVVRKA-----YPQEKVGVFVRRGKGGPLTVVEYSELD 332 (360)
Q Consensus 279 ~~~~DP-~flG~~~~~~~~~~~kvv~K~-----~p~E~vGvi~~~~~~g~~~vvEYsel~ 332 (360)
....+- .++-.+..++.++.+-+++.. ...+.+|++ . +.+|+ |+++.+-+
T Consensus 104 i~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~-d~~g~--v~~~~e~~ 159 (245)
T PRK05450 104 IPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-L-DADGR--ALYFSRAP 159 (245)
T ss_pred CCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-e-CCCCc--EEEecCCC
Confidence 332221 144444344566655444442 223445654 3 23454 55666554
No 61
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.09 E-value=0.00015 Score=73.63 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=47.6
Q ss_pred EEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHH
Q 018126 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (360)
Q Consensus 121 avvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f 200 (360)
.+|+||||.||||+.+.||.+.|+ .+++++++.++.+.+ .+. -..+|.++. ..+.+.+++
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~g~-~~iiiv~~~-~~~~i~~~~ 61 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVIDAARA---------------LGP-QKIHVVYGH-GAEQVRKAL 61 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhcee---CCccHHHHHHHHHHh---------------CCC-CeEEEEECC-CHHHHHHHh
Confidence 478999999999998889999998 789999998887653 121 234556664 467788888
Q ss_pred hh
Q 018126 201 EG 202 (360)
Q Consensus 201 ~~ 202 (360)
.+
T Consensus 62 ~~ 63 (451)
T TIGR01173 62 AN 63 (451)
T ss_pred cC
Confidence 75
No 62
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.05 E-value=0.00011 Score=75.28 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=88.3
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++.+|+||||.||||+...||.++|+ .+++++++.++.+.+. ++. ..++.++ +..+.+++
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i---~gkpli~~~i~~l~~~---------------gi~-~i~vv~~-~~~~~i~~ 64 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTL---AGKPMVQHVIDAANEL---------------GAQ-HVHLVYG-HGGDLLKQ 64 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhccee---CChhHHHHHHHHHHhc---------------CCC-cEEEEEC-CCHHHHHH
Confidence 68899999999999998889999998 7899999988876421 211 3455555 45677777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++... ++.+..| ..|.|.++....... .+ . .-+++++.+.|.++
T Consensus 65 ~~~~~--------~~~~i~~---------------------~~~~Gt~~al~~a~~-----~l-~-~~~~vlV~~gD~P~ 108 (456)
T PRK09451 65 TLADE--------PLNWVLQ---------------------AEQLGTGHAMQQAAP-----FF-A-DDEDILMLYGDVPL 108 (456)
T ss_pred hhccC--------CcEEEEC---------------------CCCCCcHHHHHHHHH-----hh-c-cCCcEEEEeCCccc
Confidence 77531 2222211 125677775544322 22 1 23688999999976
Q ss_pred ccccCH-HHHHHHHHcCCceEEEEeecCCCCcccceEEEEccCCC-eEEEEecCC
Q 018126 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGP-LTVVEYSEL 331 (360)
Q Consensus 279 ~~~~DP-~flG~~~~~~~~~~~kvv~K~~p~E~vGvi~~~~~~g~-~~vvEYsel 331 (360)
....+- .++-.+...+ ..+.+++-.+| ...|++. .+ +|+ ..++|....
T Consensus 109 i~~~~i~~l~~~~~~~~--~~i~~~~~~~~-~~yG~v~-~~-~g~V~~~~EKp~~ 158 (456)
T PRK09451 109 ISVETLQRLRDAKPQGG--IGLLTVKLDNP-TGYGRIT-RE-NGKVVGIVEQKDA 158 (456)
T ss_pred CCHHHHHHHHHHhhcCC--EEEEEEEcCCC-CCceEEE-ec-CCeEEEEEECCCC
Confidence 332211 1333332222 33333333344 4478863 32 553 244555433
No 63
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=5.8e-05 Score=73.00 Aligned_cols=165 Identities=18% Similarity=0.256 Sum_probs=118.3
Q ss_pred CEEEEEecCC--CccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcch
Q 018126 119 KLAVLLLSGG--QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (360)
Q Consensus 119 kvavvlLAGG--~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (360)
++.+|+|.|| .|||+. ++.||.+||| .|.++.+.+++...++..+ .-+++.-++..
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi---aG~pmI~Hhi~ac~qi~~l----------------~eI~LvGFy~e 62 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPI---AGVPMIHHHISACKQISGL----------------AEILLVGFYEE 62 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCcccc---CCcchhhhhHHHHhcccch----------------hheeEEecccc
Confidence 3556666677 799975 9999999999 8889999988877654433 23567778888
Q ss_pred HHHHHHHhh-cCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEE
Q 018126 194 DATRKYFEG-HKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCY 272 (360)
Q Consensus 194 ~~t~~~f~~-~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~ 272 (360)
+....|+.+ .+.|-++ |. +--+.+|.|.||-...++++ +.+-.-..+|+.
T Consensus 63 ~~f~~fis~~~~e~~~p---vr---------------------YL~E~~plGtaGgLyhFrdq-----Il~g~ps~vFvl 113 (407)
T KOG1460|consen 63 RVFTDFISAIQQEFKVP---VR---------------------YLREDNPLGTAGGLYHFRDQ-----ILAGSPSAVFVL 113 (407)
T ss_pred hHHHHHHHHHHhhcccc---hh---------------------hhccCCCCCcccceeehhhH-----HhcCCCceEEEE
Confidence 888888876 2334332 11 22256799999988887654 555667889999
Q ss_pred cCCCccccccCHHHHHHHHHcCCceEE---EEeecCCCCcccceEEEEccCCCeEEEEecCCChHHH
Q 018126 273 GVDNALVRVADPTFLGYFIDKGVSAGA---KVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLA 336 (360)
Q Consensus 273 ~vDN~L~~~~DP~flG~~~~~~~~~~~---kvv~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~~~ 336 (360)
|.|=. +...-+.++-.|...+..+.+ |+.+.. ....|.++.... .-.|+-|.|=|..-.
T Consensus 114 naDVC-csfPl~~ml~ahr~~g~~~tll~tkvs~e~--asnfG~lV~dP~--t~evlHYveKPsTfv 175 (407)
T KOG1460|consen 114 NADVC-CSFPLQDMLEAHRRYGGIGTLLVTKVSREQ--ASNFGCLVEDPS--TGEVLHYVEKPSTFV 175 (407)
T ss_pred eccee-cCCcHHHHHHHHhhcCCceEEEEEEecHhH--hhccCeeeecCC--cCceEEeecCcchhh
Confidence 99988 566778899999888887753 444433 567898887522 335889988877654
No 64
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=97.98 E-value=0.00025 Score=73.35 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=82.9
Q ss_pred EEEecCCCccccC----CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 122 VLLLSGGQGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 122 vvlLAGG~GTRLg----~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
+|+||||.||||+ .+.||.++|+. .++|++|+.++++..+ ++. ..+|.|+..-...+.
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l~--g~~~ll~~tl~~l~~~---------------~~~-~iviv~~~~~~~~~~ 64 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLALV--GDLTMLQQTLKRLAGL---------------PCS-SPLVICNEEHRFIVA 64 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEcC--CCCcHHHHHHHHHhcC---------------CCc-CcEEecCHHHHHHHH
Confidence 6899999999997 35799998872 2389999988876531 111 234666654444556
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHH--CCCeEEEEEcCC
Q 018126 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT--RGIKYIDCYGVD 275 (360)
Q Consensus 198 ~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~--~Gi~yi~v~~vD 275 (360)
+.+++ +|++..+ +.. ...|.|.|+...... ..+.+ .+-.++.|.+.|
T Consensus 65 ~~l~~---~~~~~~~--~i~---------------------Ep~~~gTa~ai~~aa-----~~~~~~~~~~~~vlVl~~D 113 (468)
T TIGR01479 65 EQLRE---IGKLASN--IIL---------------------EPVGRNTAPAIALAA-----LLAARRNGEDPLLLVLAAD 113 (468)
T ss_pred HHHHH---cCCCcce--EEe---------------------cccccCchHHHHHHH-----HHHHHHHCCCcEEEEecCc
Confidence 66654 3433211 212 123456666543321 11222 234578999999
Q ss_pred CccccccCH-H---HHHHH---HHcCCceEEEEeecCCCCcccceEEEE
Q 018126 276 NALVRVADP-T---FLGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRR 317 (360)
Q Consensus 276 N~L~~~~DP-~---flG~~---~~~~~~~~~kvv~K~~p~E~vGvi~~~ 317 (360)
+++. |+ . ++-.+ .+.+..+++-+.+ +.|....|.|...
T Consensus 114 ~~i~---~~~~f~~~l~~~~~~a~~~~lvtlgi~p-~~p~t~YGyI~~~ 158 (468)
T TIGR01479 114 HVIT---DEDAFQAAVKLAMPAAAEGKLVTFGIVP-THPETGYGYIRRG 158 (468)
T ss_pred eeec---CHHHHHHHHHHHHHHHhcCCEEEEEecC-CCCCCCceEEEeC
Confidence 9863 32 2 22222 2344444444444 4577789999763
No 65
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=97.88 E-value=0.00028 Score=61.26 Aligned_cols=36 Identities=31% Similarity=0.579 Sum_probs=32.3
Q ss_pred EEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHH
Q 018126 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (360)
Q Consensus 122 vvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~ 162 (360)
+|+||||.|+|||. ||.+.++ .|+|++++.++.+..
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i---~g~~li~~~l~~l~~ 36 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPI---GGKPLIERVLEALRE 36 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEE---TTEEHHHHHHHHHHH
T ss_pred CEEECCcCcccCCC--CccceeE---CCccHHHHHHHHhhc
Confidence 58999999999985 9999988 999999999998764
No 66
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.87 E-value=9.9e-05 Score=65.07 Aligned_cols=38 Identities=26% Similarity=0.543 Sum_probs=33.5
Q ss_pred EEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHH
Q 018126 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (360)
Q Consensus 120 vavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~ 162 (360)
+++|+||||.|+|||. ||.+.++ .||+++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~---~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL---DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee---CCeeHHHHHHHHHHh
Confidence 4689999999999985 9999998 799999999997753
No 67
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=97.80 E-value=0.00022 Score=66.25 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=49.1
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
.+++|+||||.|+|+|.+.||.++++ .||+++++.++++... ..+ -..+|.|+......+.+
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~l~~l---~gkpll~~~i~~~~~~--------------~~~-~~ivVv~~~~~~~~~~~ 63 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKMWLDL---VGEPIFIHALRPFLAD--------------NRC-SKIIIVTQAQERKHVQD 63 (230)
T ss_pred ceEEEEECCeeccccCCCCCcceeEE---CCeEHHHHHHHHHHcC--------------CCC-CEEEEEeChhhHHHHHH
Confidence 37899999999999998889999999 7999999988876521 011 13566666655555666
Q ss_pred HHhh
Q 018126 199 YFEG 202 (360)
Q Consensus 199 ~f~~ 202 (360)
++++
T Consensus 64 ~~~~ 67 (230)
T PRK13385 64 LMKQ 67 (230)
T ss_pred HHHh
Confidence 6664
No 68
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=4.7e-05 Score=71.43 Aligned_cols=67 Identities=19% Similarity=0.470 Sum_probs=56.2
Q ss_pred EEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHH
Q 018126 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (360)
Q Consensus 120 vavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (360)
+.+|+||.|.|||||.+.||++..+ .|++++.+++++|.. .++ --.+|.|+++..+...+|
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev---~gr~ii~~~i~~L~~---------------~gi-~e~vvV~~g~~~~lve~~ 64 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEV---GGREIIYRTIENLAK---------------AGI-TEFVVVTNGYRADLVEEF 64 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhc---CCeEeHHHHHHHHHH---------------cCC-ceEEEEeccchHHHHHHH
Confidence 4689999999999999999999777 599999999998763 122 246899999999999999
Q ss_pred HhhcCC
Q 018126 200 FEGHKY 205 (360)
Q Consensus 200 f~~~~~ 205 (360)
+.++++
T Consensus 65 l~~~~~ 70 (239)
T COG1213 65 LKKYPF 70 (239)
T ss_pred HhcCCc
Confidence 998664
No 69
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.79 E-value=0.00056 Score=63.06 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=32.1
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
+|+||||.||||+ .+.||+++|+ .+++++++.++.+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i---~g~pli~~~l~~l~ 40 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEV---DGKPMIEWVIESLA 40 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEE---CCEEHHHHHHHhhh
Confidence 5899999999995 4779999999 78999999888665
No 70
>PLN02917 CMP-KDO synthetase
Probab=97.65 E-value=0.0018 Score=63.05 Aligned_cols=112 Identities=18% Similarity=0.291 Sum_probs=72.6
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++.+|++|+|.++|++ +|-++++ .||+++++.++++... + .+..++.. ...+.+.+
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i---~GkPLL~~vi~~a~~~---------------~-~~~~VVV~--~~~e~I~~ 102 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHI---LGKPMIQRTWERAKLA---------------T-TLDHIVVA--TDDERIAE 102 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeE---CCEEHHHHHHHHHHcC---------------C-CCCEEEEE--CChHHHHH
Confidence 7899999999999995 5999999 7999999999977531 1 12334443 34678888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++.+ +|.+ +..| + ...+.|.|.+..++. .+ +...+++.+.+.|.+|
T Consensus 103 ~~~~---~~v~-----vi~~----------------~---~~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~Pl 148 (293)
T PLN02917 103 CCRG---FGAD-----VIMT----------------S---ESCRNGTERCNEALK------KL-EKKYDIVVNIQGDEPL 148 (293)
T ss_pred HHHH---cCCE-----EEeC----------------C---cccCCchHHHHHHHH------hc-cCCCCEEEEecCCcCC
Confidence 8864 2321 1111 0 012467777765442 23 2335799999999998
Q ss_pred ccccCHHHHHHHH
Q 018126 279 VRVADPTFLGYFI 291 (360)
Q Consensus 279 ~~~~DP~flG~~~ 291 (360)
.+|..|--++
T Consensus 149 ---I~~~tI~~li 158 (293)
T PLN02917 149 ---IEPEIIDGVV 158 (293)
T ss_pred ---CCHHHHHHHH
Confidence 4455544443
No 71
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=97.60 E-value=0.00012 Score=66.28 Aligned_cols=61 Identities=30% Similarity=0.500 Sum_probs=46.2
Q ss_pred EEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHH
Q 018126 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (360)
Q Consensus 121 avvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f 200 (360)
.+|+||||.|||||. .||.++++ .+++++++.++.+... ++ -..++.|+. ..+.++.++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i---~GkplI~~vi~~l~~~---------------~i-~~I~Vv~~~-~~~~~~~~l 60 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEV---CGRCLIDHVLSPLLKS---------------KV-NNIIIATSP-HTPKTEEYI 60 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEE---CCEEHHHHHHHHHHhC---------------CC-CEEEEEeCC-CHHHHHHHH
Confidence 578999999999975 79999999 7999999988877531 11 134555654 567788888
Q ss_pred hh
Q 018126 201 EG 202 (360)
Q Consensus 201 ~~ 202 (360)
++
T Consensus 61 ~~ 62 (183)
T TIGR00454 61 NS 62 (183)
T ss_pred hh
Confidence 64
No 72
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.56 E-value=0.00016 Score=67.68 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=48.1
Q ss_pred EEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHH
Q 018126 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (360)
Q Consensus 120 vavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (360)
|++|+||||.|+|+|.+.||-.+++ .||+++.+-++.+.+. ..+ =.+++.+++...+.++++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l---~Gkpvl~~tl~~f~~~--------------~~i-~~Ivvv~~~~~~~~~~~~ 62 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL---GGKPVLEYTLEAFLAS--------------PEI-DEIVVVVPPEDIDYVEEL 62 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE---TTEEHHHHHHHHHHTT--------------TTE-SEEEEEESGGGHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE---CCeEeHHHHHHHHhcC--------------CCC-CeEEEEecchhHHHHHHh
Confidence 6899999999999999999999988 8999999988876531 111 124555566666778887
Q ss_pred Hhh
Q 018126 200 FEG 202 (360)
Q Consensus 200 f~~ 202 (360)
+.+
T Consensus 63 ~~~ 65 (221)
T PF01128_consen 63 LSK 65 (221)
T ss_dssp HHH
T ss_pred hcC
Confidence 776
No 73
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=97.51 E-value=0.0012 Score=60.59 Aligned_cols=107 Identities=19% Similarity=0.365 Sum_probs=70.8
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
....|+||||+++|| .+|+++++ .|++++++.++++.. .+. . ++.++..+.+.
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~---~g~~lie~v~~~L~~----------------~~~-~-vvi~~~~~~~~--- 56 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPL---NGRPLIEHVIDRLRP----------------QVD-V-VVISANRNQGR--- 56 (192)
T ss_pred CceEEEecCCccccc---ccccccee---CCeEHHHHHHHHhcc----------------cCC-E-EEEeCCCchhh---
Confidence 678999999999999 88999988 889999999998762 122 3 34444444332
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCC---hhHhHHHhhCcHHHHHHHCCCeEEEEEcCC
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGN---GGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~Gh---Ggi~~aL~~sg~l~~l~~~Gi~yi~v~~vD 275 (360)
|. .||++ .+- ..+.|. +|++.+|. .-+-+|++|..+|
T Consensus 57 ~~----~~g~~-------------vv~--------------D~~~~~GPL~Gi~~al~---------~~~~~~~~v~~~D 96 (192)
T COG0746 57 YA----EFGLP-------------VVP--------------DELPGFGPLAGILAALR---------HFGTEWVLVLPCD 96 (192)
T ss_pred hh----ccCCc-------------eee--------------cCCCCCCCHHHHHHHHH---------hCCCCeEEEEecC
Confidence 33 25543 111 011222 35555554 4447899999999
Q ss_pred CccccccCHHHHHHHHHcCC
Q 018126 276 NALVRVADPTFLGYFIDKGV 295 (360)
Q Consensus 276 N~L~~~~DP~flG~~~~~~~ 295 (360)
.++ ..|.++-+..+...
T Consensus 97 ~P~---i~~~lv~~l~~~~~ 113 (192)
T COG0746 97 MPF---IPPELVERLLSAFK 113 (192)
T ss_pred CCC---CCHHHHHHHHHhhc
Confidence 997 55777777776443
No 74
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.0012 Score=66.42 Aligned_cols=174 Identities=15% Similarity=0.253 Sum_probs=108.6
Q ss_pred CCEEEEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchH
Q 018126 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (360)
.++-+++||||+|+||+ ...+|...|+|=. .=+.++-+- +... .++ --.++.|-...|
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGk--YRiIDF~LS------N~vN---------SGi-~~I~VltQy~~~- 64 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGK--YRIIDFALS------NCVN---------SGI-RRIGVLTQYKSH- 64 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCce--eEEEeEEcc------cccc---------cCC-CeEEEEeccchh-
Confidence 46888999999999997 5668887777421 122232111 2211 122 246788888888
Q ss_pred HHHHHHhhcCCCCCCCC--cEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEE
Q 018126 195 ATRKYFEGHKYFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCY 272 (360)
Q Consensus 195 ~t~~~f~~~~~FGl~~~--~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~ 272 (360)
...+++.....|++++. .|+++....- .+++ .|. -|+.+.+ +++ +..+.+-+.+|+.+.
T Consensus 65 SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~----~~~~-----~wy-----~Gtadai---~Qn--l~~i~~~~~eyvlIl 125 (393)
T COG0448 65 SLNDHIGRGWPWDLDRKNGGVFILPAQQR----EGGE-----RWY-----EGTADAI---YQN--LLIIRRSDPEYVLIL 125 (393)
T ss_pred HHHHHhhCCCccccccccCcEEEeCchhc----cCCC-----cce-----eccHHHH---HHh--HHHHHhcCCCEEEEe
Confidence 88899999888888753 3333321111 0111 011 3344332 222 444567789999999
Q ss_pred cCCCccccccCHHHHHHHHHcCCceEEEEe--ecCCCCcccceEEEEccCCCeEEEEecCCChH
Q 018126 273 GVDNALVRVADPTFLGYFIDKGVSAGAKVV--RKAYPQEKVGVFVRRGKGGPLTVVEYSELDPS 334 (360)
Q Consensus 273 ~vDN~L~~~~DP~flG~~~~~~~~~~~kvv--~K~~p~E~vGvi~~~~~~g~~~vvEYsel~~~ 334 (360)
+.|=+ .+..--.++-+|.+.++++++-|. ++.. ....|++.. +++| +|+|+.|=|.+
T Consensus 126 sgDhI-YkmDy~~ml~~H~~~gadiTv~~~~Vp~~e-as~fGim~~-D~~~--~i~~F~eKp~~ 184 (393)
T COG0448 126 SGDHI-YKMDYSDMLDFHIESGADVTVAVKEVPREE-ASRFGVMNV-DENG--RIIEFVEKPAD 184 (393)
T ss_pred cCCEE-EecCHHHHHHHHHHcCCCEEEEEEECChHh-hhhcCceEE-CCCC--CEEeeeeccCc
Confidence 99998 687777799999999999975443 2222 345685544 3455 58888887776
No 75
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=97.50 E-value=0.0011 Score=60.49 Aligned_cols=39 Identities=31% Similarity=0.665 Sum_probs=34.9
Q ss_pred EEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 120 vavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
+++|+||||.|+|||...||.++|+ .|||++++.++++.
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i---~Gkpll~~~i~~l~ 39 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL---GGKPVLEHTLEAFL 39 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE---CCeEHHHHHHHHHh
Confidence 4689999999999987789999999 79999999988775
No 76
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=97.49 E-value=0.003 Score=57.64 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=76.5
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++++|+||||.|+||+ .|.+.++ .||+++++.++.+.+.. . +.-++.++ .++.+.+
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l---~Gkpll~~~l~~l~~~~--------------~--~~~IvV~~--~~~~i~~ 56 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL---GGKPLIAWTIEAALESK--------------L--FDRVVVST--DDEEIAE 56 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh---CCccHHHHHHHHHHhCC--------------C--CCEEEEEC--CcHHHHH
Confidence 5789999999999995 4888888 79999999998876311 1 22233333 3566777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHC--CCeEEEEEcCCC
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR--GIKYIDCYGVDN 276 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~--Gi~yi~v~~vDN 276 (360)
++.+ +|.. + .+.. +..+.....|.++..... ++.+... +.+++.+++.|.
T Consensus 57 ~~~~---~~~~---~-~~~~----------------~~~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~ 108 (223)
T cd02513 57 VARK---YGAE---V-PFLR----------------PAELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTS 108 (223)
T ss_pred HHHH---hCCC---c-eeeC----------------ChHHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCC
Confidence 7764 3321 1 1110 111111112333333332 3333332 357999999999
Q ss_pred ccccccCH-HHHHHHHHcCCceEEEEeecC
Q 018126 277 ALVRVADP-TFLGYFIDKGVSAGAKVVRKA 305 (360)
Q Consensus 277 ~L~~~~DP-~flG~~~~~~~~~~~kvv~K~ 305 (360)
++....+- .++-.+...++++.+.+.+-.
T Consensus 109 P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~ 138 (223)
T cd02513 109 PLRSAEDIDEAIELLLSEGADSVFSVTEFH 138 (223)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 98432221 134444445677766665543
No 77
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.48 E-value=0.0021 Score=59.56 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=66.3
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
++++|++|+|.++|++ +|.+.|+ .||+++++.++.+.+. .+ +.-+++++. ++.+.+
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i---~GkPli~~~i~~l~~~--------------~~--~~~ivv~t~--~~~i~~ 57 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDI---LGKPMIQHVYERAAQA--------------AG--VEEVYVATD--DQRIED 57 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCcc---CCcCHHHHHHHHHHhc--------------CC--CCeEEEECC--hHHHHH
Confidence 5789999999999995 4999888 7999999999877631 01 222334433 478889
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
++++ +|.+ + ++.. ...+.|.+++..++.. + +-+++.+.+.|+++
T Consensus 58 ~~~~---~~~~---v-~~~~--------------------~~~~~g~~~~~~a~~~------~---~~d~~lv~~~D~P~ 101 (238)
T PRK13368 58 AVEA---FGGK---V-VMTS--------------------DDHLSGTDRLAEVMLK------I---EADIYINVQGDEPM 101 (238)
T ss_pred HHHH---cCCe---E-EecC--------------------ccCCCccHHHHHHHHh------C---CCCEEEEEcCCcCc
Confidence 8874 3432 2 1110 1113566665544322 2 45789999999987
Q ss_pred cc
Q 018126 279 VR 280 (360)
Q Consensus 279 ~~ 280 (360)
..
T Consensus 102 i~ 103 (238)
T PRK13368 102 IR 103 (238)
T ss_pred CC
Confidence 33
No 78
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.37 E-value=0.00042 Score=66.07 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=37.4
Q ss_pred CCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHH
Q 018126 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~ 162 (360)
.++++|+||||.|||||.+.||.++++ .|++++++.++.+..
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l---~Gkpll~~tl~~~~~ 64 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPL---LGQPIALYSLYTFAR 64 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEE---CCeEHHHHHHHHHHh
Confidence 468999999999999998899999988 799999998887653
No 79
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.29 E-value=0.0041 Score=62.30 Aligned_cols=39 Identities=26% Similarity=0.505 Sum_probs=34.9
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
++++|+||||+||||| ..||.++++ .++|++++.++++.
T Consensus 5 ~i~~VILAgG~s~Rmg-g~~K~ll~i---~Gkpll~~~i~~l~ 43 (366)
T PRK14489 5 QIAGVILAGGLSRRMN-GRDKALILL---GGKPLIERVVDRLR 43 (366)
T ss_pred CceEEEEcCCcccCCC-CCCCceeEE---CCeeHHHHHHHHHH
Confidence 6899999999999996 379999998 79999999998775
No 80
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=97.28 E-value=0.0019 Score=57.24 Aligned_cols=37 Identities=30% Similarity=0.568 Sum_probs=32.7
Q ss_pred EEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHH
Q 018126 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (360)
Q Consensus 121 avvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~ 162 (360)
++|+||||.|+|||. ||.++++ .+++++++.++++..
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 38 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLEL---GGKPLLEHVLERLKP 38 (181)
T ss_pred cEEEECCCccccCCC--CceeeEE---CCEEHHHHHHHHHHh
Confidence 579999999999986 9999998 689999999887763
No 81
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=97.26 E-value=0.0084 Score=60.52 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=36.4
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
++++|+||||.|+|||...||.++++ .+++++++.++.+.
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKqll~l---~GkPll~~tl~~l~ 44 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQWLRI---GGKPLWLHVLENLS 44 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeEEEE---CCeeHHHHHHHHHh
Confidence 58899999999999998889999999 79999999888765
No 82
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=97.20 E-value=0.0042 Score=55.79 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=31.3
Q ss_pred EEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 121 avvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
++|+||||.|+|||. +|.++++ .|++++++.++.++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~ 37 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL---GETTLGSASLKTAL 37 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee---CCccHHHHHHHHHH
Confidence 579999999999985 7999888 79999999887654
No 83
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.11 E-value=0.00091 Score=60.22 Aligned_cols=60 Identities=28% Similarity=0.520 Sum_probs=46.2
Q ss_pred EEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHH
Q 018126 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (360)
Q Consensus 121 avvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f 200 (360)
.+|+||||+|||||. .-|.++++ .||+++.+-.+.+.. .+ =-.++-||.+| ..|++|+
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~---~~--------------d~i~v~isp~t-p~t~~~~ 59 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRK---IV--------------DEIIVAISPHT-PKTKEYL 59 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHh---hc--------------CcEEEEeCCCC-HhHHHHH
Confidence 579999999999996 56878777 899999988776553 11 12578888776 6788898
Q ss_pred hh
Q 018126 201 EG 202 (360)
Q Consensus 201 ~~ 202 (360)
++
T Consensus 60 ~~ 61 (177)
T COG2266 60 ES 61 (177)
T ss_pred Hh
Confidence 86
No 84
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.06 E-value=0.00067 Score=61.87 Aligned_cols=39 Identities=28% Similarity=0.624 Sum_probs=34.7
Q ss_pred CCEEEEEecCCCccccCCCCCCCceeecCCCC-CccHHHHHHHHH
Q 018126 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSG-KSLFQLQAERIL 161 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~-ksllql~~e~i~ 161 (360)
-++++|+||||+++||| .+|.++++ .+ +|++++.++++.
T Consensus 7 ~~i~~vILAgG~s~RmG--~~K~ll~~---~g~~~ll~~~i~~l~ 46 (196)
T PRK00560 7 DNIPCVILAGGKSSRMG--ENKALLPF---GSYSSLLEYQYTRLL 46 (196)
T ss_pred cCceEEEECCcccccCC--CCceEEEe---CCCCcHHHHHHHHHH
Confidence 47899999999999997 58999888 68 999999999875
No 85
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=97.05 E-value=0.001 Score=60.87 Aligned_cols=38 Identities=29% Similarity=0.631 Sum_probs=34.1
Q ss_pred EEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 121 avvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
++|+||||.|||||.+.||.++++ .||+++++.++++.
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l---~gkpll~~~l~~l~ 38 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL---GGRPLLEHTLDAFL 38 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE---CCeEHHHHHHHHHh
Confidence 368999999999998889999998 79999999888775
No 86
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.98 E-value=0.0012 Score=58.59 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=31.4
Q ss_pred EEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 122 vvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
+|+||||.|+||| .||.++++ .|++++++.++.++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~---~g~pll~~~i~~l~ 36 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY---KGKTILEHVVDNAL 36 (188)
T ss_pred eEEECCCCcccCC--CCceeccc---CCeeHHHHHHHHHH
Confidence 6899999999998 58999888 79999999888776
No 87
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=96.92 E-value=0.037 Score=52.00 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=75.7
Q ss_pred EEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHHh
Q 018126 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (360)
Q Consensus 122 vvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f~ 201 (360)
+|++|+|.||||+ +|.+.++ .||+++++.++++.+. ++. ..+|-|. ++.+.+.++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l---~GkPli~~~le~~~~~---------------~~d-~VvVvt~---~~~i~~~~~ 56 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI---FGKPMIVHVAENANES---------------GAD-RCIVATD---DESVAQTCQ 56 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc---CCcCHHHHHHHHHHhC---------------CCC-eEEEEeC---HHHHHHHHH
Confidence 6899999999994 7999888 7999999998876421 111 2344443 355677666
Q ss_pred hcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCccccc
Q 018126 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 281 (360)
Q Consensus 202 ~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~~~ 281 (360)
+ ||.+ +. +.. ...+.|...+..++.. +....-+++.+++.|.+|
T Consensus 57 ~---~g~~---~v-----------------~~~----~~~~~Gt~r~~~~~~~------l~~~~~d~Vli~~gD~Pl--- 100 (238)
T TIGR00466 57 K---FGIE---VC-----------------MTS----KHHNSGTERLAEVVEK------LALKDDERIVNLQGDEPF--- 100 (238)
T ss_pred H---cCCE---EE-----------------EeC----CCCCChhHHHHHHHHH------hCCCCCCEEEEEcCCcCc---
Confidence 4 4432 11 100 0113454445544421 111134789999999998
Q ss_pred cCHHHHHHHHH----cCCceEEEEeecCCCC
Q 018126 282 ADPTFLGYFID----KGVSAGAKVVRKAYPQ 308 (360)
Q Consensus 282 ~DP~flG~~~~----~~~~~~~kvv~K~~p~ 308 (360)
.+|..|--+++ .++++++-+++..++.
T Consensus 101 i~~~~I~~li~~~~~~~~~~a~~~~~~~d~~ 131 (238)
T TIGR00466 101 IPKEIIRQVADNLATKNVPMAALAVKIHDAE 131 (238)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeeecCCHH
Confidence 55766655554 3466766666655433
No 88
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=96.85 E-value=0.0011 Score=61.30 Aligned_cols=40 Identities=25% Similarity=0.582 Sum_probs=36.5
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
++++|+||||.|+|+|...||.+.++ .|++++++.++++.
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~---~g~pli~~~l~~l~ 42 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPL---GGKPILEHTLEAFL 42 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEE---CCEEHHHHHHHHHH
Confidence 58899999999999998889999999 69999999988776
No 89
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.79 E-value=0.0015 Score=58.91 Aligned_cols=39 Identities=33% Similarity=0.599 Sum_probs=34.4
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
++.+|+||||.|+||| ..||.+.++ .|+|++++.++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~ll~~---~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKGLQEL---NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCceeEE---CCEEHHHHHHHHHh
Confidence 6899999999999996 369999998 78999999888765
No 90
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=96.78 E-value=0.027 Score=52.14 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.3
Q ss_pred EEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 122 vvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
+|+||||.++||+ +|.+.++ .|++++++.++.+.
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l---~Gkpli~~~i~~l~ 35 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL---GGKPLLEHLLDRLK 35 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc---CCccHHHHHHHHHH
Confidence 4889999999995 5999888 78999999888775
No 91
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=96.74 E-value=0.0014 Score=58.26 Aligned_cols=38 Identities=32% Similarity=0.634 Sum_probs=33.2
Q ss_pred EEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 120 vavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
+++|+||||.|||||. .||.+.++ .++|++++.++++.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i---~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL---GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE---CCEEHHHHHHHHHH
Confidence 4689999999999983 39999998 79999999998774
No 92
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.72 E-value=0.0016 Score=59.57 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=34.1
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
++++|+||||.|+|||. +|.++++ .++|++++.++.+.
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~ 44 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW---QGVPLLQRVARIAA 44 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE---CCEeHHHHHHHHHH
Confidence 68899999999999985 7999998 79999999988775
No 93
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=96.63 E-value=0.005 Score=58.05 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=51.2
Q ss_pred CCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHH
Q 018126 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (360)
.++.+|++|+|.|||+|.+.||-.+++ .++++|++-++.+++.. . -=..+|.++..-+....
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~l~l---~g~pll~~tl~~f~~~~--------------~-i~~Ivvv~~~~~~~~~~ 64 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQYLEL---GGRPLLEHTLEAFLESP--------------A-IDEIVVVVSPEDDPYFE 64 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceEEEE---CCEEehHHHHHHHHhCc--------------C-CCeEEEEEChhhhHHHH
Confidence 478999999999999999999999988 89999999888766311 1 11346666666777777
Q ss_pred HHHh
Q 018126 198 KYFE 201 (360)
Q Consensus 198 ~~f~ 201 (360)
++.+
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 7775
No 94
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=96.55 E-value=0.0025 Score=63.58 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=34.7
Q ss_pred CCCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 117 DGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 117 ~gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
++.+..|+||||+|+||| .+|.++++ .+++++++.++++.
T Consensus 158 ~~~i~~IILAGGkSsRMG--~dKaLL~~---~GkpLl~~~ie~l~ 197 (346)
T PRK14500 158 QTPLYGLVLTGGKSRRMG--KDKALLNY---QGQPHAQYLYDLLA 197 (346)
T ss_pred CCCceEEEEeccccccCC--CCccccee---CCccHHHHHHHHHH
Confidence 346889999999999998 59999988 69999999887665
No 95
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.52 E-value=0.0048 Score=61.85 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=34.5
Q ss_pred CCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
-+++.|+||||+|+||| .+|.++++ .|++++++.++++.
T Consensus 173 ~~i~~iILAGG~SsRmG--~~K~ll~~---~Gk~ll~~~l~~l~ 211 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG--SDKALLSY---HESNQLVHTAALLR 211 (369)
T ss_pred CCceEEEEcCCccccCC--CCcEEEEE---CCccHHHHHHHHHH
Confidence 46789999999999998 48999999 79999999888775
No 96
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.49 E-value=0.076 Score=52.29 Aligned_cols=183 Identities=20% Similarity=0.222 Sum_probs=105.6
Q ss_pred EEEEEecCCCcccc----CCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHH
Q 018126 120 LAVLLLSGGQGTRL----GSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (360)
Q Consensus 120 vavvlLAGG~GTRL----g~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (360)
+.-|+||||.|||| ....||-.+ .|.+++|+||..++|+..+.. .-.+++.|+..-..-
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl--~L~~~~Sllq~T~~R~~~l~~---------------~~~~~vVtne~~~f~ 64 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFL--KLFGDLSLLQQTVKRLAFLGD---------------IEEPLVVTNEKYRFI 64 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccce--eeCCCCcHHHHHHHHHhhcCC---------------ccCeEEEeCHHHHHH
Confidence 45689999999999 477799985 556699999999998875321 124567787766666
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCC
Q 018126 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (360)
Q Consensus 196 t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vD 275 (360)
+++=+.+-+ .+ ...+ ++++--.+ -++|-= .+.+ +.-....|-.-+.|.-.|
T Consensus 65 v~eql~e~~-----~~-------------~~~~-illEP~gR-nTApAI---A~aa------~~~~~~~~d~~~lVlpsD 115 (333)
T COG0836 65 VKEQLPEID-----IE-------------NAAG-IILEPEGR-NTAPAI---ALAA------LSATAEGGDALVLVLPSD 115 (333)
T ss_pred HHHHHhhhh-----hc-------------cccc-eEeccCCC-CcHHHH---HHHH------HHHHHhCCCcEEEEecCc
Confidence 666665411 10 0112 33321111 222211 1111 222233343457888888
Q ss_pred CccccccCH-HHHHHHH------HcCCceEEEEeecCCCCcccceEEEEcc--C-CCeEEEEecCCChHHHhhcccCCCc
Q 018126 276 NALVRVADP-TFLGYFI------DKGVSAGAKVVRKAYPQEKVGVFVRRGK--G-GPLTVVEYSELDPSLASAINQETGR 345 (360)
Q Consensus 276 N~L~~~~DP-~flG~~~------~~~~~~~~kvv~K~~p~E~vGvi~~~~~--~-g~~~vvEYsel~~~~~~~~~~~~g~ 345 (360)
-.. .|. .|.-... +++.-++.=+++. .|.-..|=|-.-.+ + +-+.|-++-|=|+....+.--++|+
T Consensus 116 H~I---~d~~af~~av~~A~~~A~~g~lVTfGI~Pt-~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~ 191 (333)
T COG0836 116 HVI---ADEEAFLNAVKKAEKAAEEGGIVTFGIPPT-RPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGE 191 (333)
T ss_pred cee---ccHHHHHHHHHHHHHHHHcCCEEEEecCCC-CCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCc
Confidence 764 333 3433221 2444455556664 58888888866211 1 4577877777777655544445787
Q ss_pred eeeeccc
Q 018126 346 LRFCWSN 352 (360)
Q Consensus 346 l~f~~gn 352 (360)
...|.|.
T Consensus 192 y~WNSGm 198 (333)
T COG0836 192 YLWNSGM 198 (333)
T ss_pred eEeeccc
Confidence 7776665
No 97
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=96.05 E-value=0.27 Score=51.29 Aligned_cols=180 Identities=17% Similarity=0.186 Sum_probs=98.0
Q ss_pred CEEEEEecCCCccccC----CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchH
Q 018126 119 KLAVLLLSGGQGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (360)
Q Consensus 119 kvavvlLAGG~GTRLg----~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (360)
++-.|+||||.||||- ...||.+.|+ -.++|+||..++|+..+ +..=++ |.|+..-.+
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~---------------~~~~~i-ivt~~~~~~ 66 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV---------------ECESPV-VICNEQHRF 66 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC---------------CCCCcE-EEeCHHHHH
Confidence 4678999999999995 3459999877 23489999999987532 112234 668877677
Q ss_pred HHHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHC--C-CeEEEE
Q 018126 195 ATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR--G-IKYIDC 271 (360)
Q Consensus 195 ~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~--G-i~yi~v 271 (360)
.+++-+.+... ... ++++ +|..--++|.- .+.++ .+.++ + -.-+.|
T Consensus 67 ~v~~ql~~~~~---~~~-----------------~ii~-EP~~rnTApai---alaa~-------~~~~~~~~~~~~v~v 115 (478)
T PRK15460 67 IVAEQLRQLNK---LTE-----------------NIIL-EPAGRNTAPAI---ALAAL-------AAKRHSPESDPLMLV 115 (478)
T ss_pred HHHHHHHhcCC---ccc-----------------cEEe-cCCCCChHHHH---HHHHH-------HHHHhcCCCCCeEEE
Confidence 77777764221 111 2222 22221222221 12222 12222 2 246788
Q ss_pred EcCCCccccccCH-HHHH-----HHH-HcCCceEEEEeecCCCCcccceEEEEcc-C-----CCeEEEEecCCChHHHhh
Q 018126 272 YGVDNALVRVADP-TFLG-----YFI-DKGVSAGAKVVRKAYPQEKVGVFVRRGK-G-----GPLTVVEYSELDPSLASA 338 (360)
Q Consensus 272 ~~vDN~L~~~~DP-~flG-----~~~-~~~~~~~~kvv~K~~p~E~vGvi~~~~~-~-----g~~~vvEYsel~~~~~~~ 338 (360)
...|... .|. .|.. ... +.+.-+++=+.+ +.|....|=|-.-.. + +-..|..+-|=|+....+
T Consensus 116 lPaDH~I---~d~~~F~~~i~~A~~~A~~~~lvt~GI~P-t~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~ 191 (478)
T PRK15460 116 LAADHVI---ADEDAFRAAVRNAMPYAEAGKLVTFGIVP-DLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQ 191 (478)
T ss_pred ecccccc---CCHHHHHHHHHHHHHHHhcCCEEEEecCC-CCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHH
Confidence 8899874 232 2322 221 234333444444 568999998865311 0 234666666666554333
Q ss_pred cccCCCceeeecc
Q 018126 339 INQETGRLRFCWS 351 (360)
Q Consensus 339 ~~~~~g~l~f~~g 351 (360)
.--++|...-|+|
T Consensus 192 ~yl~~G~y~WNsG 204 (478)
T PRK15460 192 AYVASGEYYWNSG 204 (478)
T ss_pred HHHHcCCEEEecc
Confidence 2234676555554
No 98
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=95.02 E-value=0.035 Score=51.05 Aligned_cols=60 Identities=22% Similarity=0.442 Sum_probs=46.4
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+++||.|+|||+. .+-||+++.| .|+++++.++++|+. .+ |-=++...++.++.. +
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e---------------~g--I~dI~IVvGYlkE~F-e 61 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE---------------AG--IDDITIVVGYLKEQF-E 61 (231)
T ss_pred eEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH---------------CC--CceEEEEeeehHHHH-H
Confidence 6889999999985 7889999888 899999999998862 13 445566677777775 4
Q ss_pred HHhh
Q 018126 199 YFEG 202 (360)
Q Consensus 199 ~f~~ 202 (360)
||++
T Consensus 62 YLkd 65 (231)
T COG4750 62 YLKD 65 (231)
T ss_pred HHHH
Confidence 5554
No 99
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=94.64 E-value=0.052 Score=52.42 Aligned_cols=167 Identities=22% Similarity=0.279 Sum_probs=90.5
Q ss_pred EEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHH
Q 018126 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (360)
Q Consensus 122 vvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (360)
+|+.|.|+|||+= -..||=|+|| -+|+..|+.++-... .| |--+++.++.+...+.+
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPI---vdKP~IqYiVeEa~~---------------aG--Ie~i~iVTgr~K~~IeD 66 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYIVEEAVA---------------AG--IEEILIVTGRGKRAIED 66 (291)
T ss_pred EEEEccCcccccccccccCchhhccc---cCchhHHHHHHHHHH---------------cC--CCEEEEEecCCcchHHH
Confidence 5788889999983 5669999999 789999999885542 24 33444444555558888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCceeeeecCCcc-cc---c-CC--C----cccccCCCChhHhHHHhhCcHHHHHHHCCCe
Q 018126 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRF-IM---E-TP--Y----KVAKAPDGNGGVYSALKSSKLLEDMATRGIK 267 (360)
Q Consensus 199 ~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki-~l---~-~~--~----~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~ 267 (360)
||... |-|... +...||. ++ . -+ . --...|.|=|.....-+. |. |-+
T Consensus 67 hFD~s--~ELE~~------------L~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~------~v--g~E 124 (291)
T COG1210 67 HFDTS--YELENT------------LEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKP------FV--GDE 124 (291)
T ss_pred hCcCc--HHHHHH------------HHHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhh------hc--CCC
Confidence 88541 222100 1111221 00 0 00 0 113568888887765432 32 445
Q ss_pred EEEEEcCCCccccccCHH---HHHHHHHcCC-ceEEEEeecCCCCcccceEEEE--ccCCCeEEEEecCCC
Q 018126 268 YIDCYGVDNALVRVADPT---FLGYFIDKGV-SAGAKVVRKAYPQEKVGVFVRR--GKGGPLTVVEYSELD 332 (360)
Q Consensus 268 yi~v~~vDN~L~~~~DP~---flG~~~~~~~-~~~~kvv~K~~p~E~vGvi~~~--~~~g~~~vvEYsel~ 332 (360)
-+.|.--|-+. ...-|. ++-...+.+. -++++-|++.. -.+.|+|..- ..+|-++|...-|=|
T Consensus 125 pFaVlL~Ddl~-~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~-v~kYGvi~~g~~~~~~~~~v~~~VEKP 193 (291)
T COG1210 125 PFAVLLPDDLV-DSEKPCLKQMIELYEETGGSVIGVEEVPPED-VSKYGVIDPGEPVEKGVYKVKGMVEKP 193 (291)
T ss_pred ceEEEeCCeee-cCCchHHHHHHHHHHHhCCcEEEEEECCHHH-CcccceEecCccccCCeEEEEEEEECC
Confidence 44444455542 322333 3333333444 34666665543 5678999721 113346665555444
No 100
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=94.21 E-value=1 Score=41.86 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=76.3
Q ss_pred EEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHHh
Q 018126 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (360)
Q Consensus 122 vvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f~ 201 (360)
+|++|.|.++|++ .|-+.++ .||+++++.++..++.. . +-.++.+++ ++++.++.+
T Consensus 2 aiIpArG~Skr~~---~Knl~~l---~GkpLi~~ti~~a~~s~--------------~--~d~IvVstd--~~~i~~~a~ 57 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF---CGKPMIAYSIEAALNSG--------------L--FDKVVVSTD--DEEIAEVAK 57 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc---CCcCHHHHHHHHHHhCC--------------C--CCEEEEeCC--CHHHHHHHH
Confidence 5788999999995 4877677 79999999988765310 1 223344443 367777777
Q ss_pred hcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHH-CCCeEEEEEcCCCcccc
Q 018126 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT-RGIKYIDCYGVDNALVR 280 (360)
Q Consensus 202 ~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~-~Gi~yi~v~~vDN~L~~ 280 (360)
+ +|.. |.+ . .|..++..-.|..++.... ++.+.+ ...+++.+.+.|.+|..
T Consensus 58 ~---~g~~---v~~-~----------------r~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~ 109 (222)
T TIGR03584 58 S---YGAS---VPF-L----------------RPKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQ 109 (222)
T ss_pred H---cCCE---eEE-e----------------ChHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCC
Confidence 4 3431 111 1 1111111123333444332 333432 34688999999999844
Q ss_pred ccCHH-HHHHHHHcCCceEEEEeecC
Q 018126 281 VADPT-FLGYFIDKGVSAGAKVVRKA 305 (360)
Q Consensus 281 ~~DP~-flG~~~~~~~~~~~kvv~K~ 305 (360)
..|-. .+-...+.++|..+.|++..
T Consensus 110 ~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 110 AKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 33221 33444456789888888743
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=91.09 E-value=0.29 Score=45.17 Aligned_cols=40 Identities=33% Similarity=0.580 Sum_probs=35.7
Q ss_pred CCCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHH
Q 018126 117 DGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (360)
Q Consensus 117 ~gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~ 161 (360)
..+++.|+||-|.||||| .+|-++|+ .++++..+.+++.+
T Consensus 3 ~~~v~~VvLAAGrssRmG--~~KlLap~---~g~plv~~~~~~a~ 42 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG--QPKLLAPL---DGKPLVRASAETAL 42 (199)
T ss_pred CcceEEEEEcccccccCC--Ccceeccc---CCCcHHHHHHHHHH
Confidence 358999999999999999 78999988 89999999888765
No 102
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=85.91 E-value=7.5 Score=40.67 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=48.2
Q ss_pred CCCCCCCcEEEEEcCc---eeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcccc
Q 018126 205 YFGLESDQVTFFQQGT---IPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 280 (360)
Q Consensus 205 ~FGl~~~~v~~f~Q~~---~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L~~ 280 (360)
.||..- +|.|=.|.. -.++|.++...-++.+++.--|.|||.+...|. +..-..|+|=||||+...
T Consensus 229 ~~~v~f-~IsfS~Qk~sTDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNLN---------~ldaDiIFIKNIDNVvpd 297 (513)
T PF14134_consen 229 KYGVKF-EISFSEQKPSTDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENLN---------DLDADIIFIKNIDNVVPD 297 (513)
T ss_pred hhCceE-EEEecccCCCCCeeEECCCCCccCCCCCCEEeCCCcchHHHhhhc---------cccCCEEEEeCccccCCc
Confidence 355543 466666653 346788888887888899999999998777653 333588999999999643
No 103
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=82.25 E-value=3.8 Score=38.77 Aligned_cols=95 Identities=28% Similarity=0.328 Sum_probs=63.7
Q ss_pred CEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHH-----------HHHHHhhhcCCCCCCCCceeEEEe
Q 018126 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCV-----------QRLAAQVTSEGGGSGSAAIHWYIM 187 (360)
Q Consensus 119 kvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~l-----------q~la~~~~~~~~~~~~~~ipl~IM 187 (360)
+..+||-|-=..|||-- |.+.+| .||+++++-++|...- ++.+.... +.|. -++|
T Consensus 3 ~~~viIPAR~~STRLpg---KPLadI---~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~-----~~G~---~avm 68 (247)
T COG1212 3 KFVVIIPARLASTRLPG---KPLADI---GGKPMIVRVAERALKSGADRVVVATDDERIAEAVQ-----AFGG---EAVM 68 (247)
T ss_pred ceEEEEecchhcccCCC---Cchhhh---CCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-----HhCC---EEEe
Confidence 67889999888899822 555556 8999999999987632 11111111 1232 3799
Q ss_pred cCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCceeeeecC
Q 018126 188 TSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKD 227 (360)
Q Consensus 188 TS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~ 227 (360)
||.+-..-|....+--.-.+++.+.+.+-.|+..|++..+
T Consensus 69 T~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~ 108 (247)
T COG1212 69 TSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPE 108 (247)
T ss_pred cCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHH
Confidence 9997655444444443346677788999999999998743
No 104
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=71.00 E-value=4.3 Score=33.40 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=30.6
Q ss_pred Cchhccccc-cCCHHHHHHHHHHHhcCChHHHHHHHHH
Q 018126 37 QEDAFALWD-ELSPDERDHLVKDIESLDLPRVDRIIRC 73 (360)
Q Consensus 37 Q~Hl~~~~~-~l~~~ek~~L~~ql~~iD~~~~~~~~~~ 73 (360)
|-+||+-|- .=+++||+.|+++|+.+|.....++|+.
T Consensus 59 qlkLf~qWf~~W~~~ern~fl~~Lee~D~~f~~k~~~~ 96 (98)
T PF14969_consen 59 QLKLFRQWFPKWSEEERNKFLEQLEEIDPDFVAKFYQE 96 (98)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 567885554 4589999999999999999988888764
No 105
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=66.31 E-value=23 Score=31.90 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=51.4
Q ss_pred EEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHH------------HHhhhcCCCCCCCCceeEEEec
Q 018126 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRL------------AAQVTSEGGGSGSAAIHWYIMT 188 (360)
Q Consensus 121 avvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~l------------a~~~~~~~~~~~~~~ipl~IMT 188 (360)
++|+-|-|-.+||-- |-+.++ .|||++++.+++++..+.. +.-.. .++. -++|+
T Consensus 1 iaiIpAR~gS~rlp~---Knl~~l---~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~-----~~g~---~v~~~ 66 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG---KNLKPL---GGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAE-----EYGA---KVIFR 66 (217)
T ss_dssp EEEEEE-SSSSSSTT---GGGSEE---TTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-----HTTS---EEEE-
T ss_pred CEEEecCCCCCCCCc---chhhHh---CCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHH-----HcCC---eeEEc
Confidence 356667665666622 445555 8999999999998753221 00000 0232 24777
Q ss_pred CCcchHHHHHHHhhcCCCCCCCCcEEEEEcCceeeeec
Q 018126 189 SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK 226 (360)
Q Consensus 189 S~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~ 226 (360)
++.-...+..+.+--.++..+.+.+.+..|+..|.++.
T Consensus 67 ~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~ 104 (217)
T PF02348_consen 67 RGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDP 104 (217)
T ss_dssp -TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--H
T ss_pred ChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCH
Confidence 77666666666555444555444578888888887763
No 106
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=65.80 E-value=6 Score=40.18 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=49.0
Q ss_pred CEEEEEecCCCccccC---CCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHH
Q 018126 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (360)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (360)
+...|++|||-|||+- ...||.++|| -+++++.+-+.-+.+ + +- --..+.+-..-.++
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPI---gn~PMi~YpL~~L~~----~-----------gf-teiiVv~~e~e~~~ 69 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPI---GNKPMILYPLNSLEQ----A-----------GF-TEIIVVVNEDEKLD 69 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhccc---CCcceeeeehhHHHh----c-----------CC-eEEEEEecHHHHHH
Confidence 4556899999999984 6779999999 667888776664432 1 11 12345555667788
Q ss_pred HHHHHhhcCCCCCCC
Q 018126 196 TRKYFEGHKYFGLES 210 (360)
Q Consensus 196 t~~~f~~~~~FGl~~ 210 (360)
+++.+.+ ++-+..
T Consensus 70 i~~al~~--~~~l~~ 82 (433)
T KOG1462|consen 70 IESALGS--NIDLKK 82 (433)
T ss_pred HHHHHhc--CCcccc
Confidence 9999976 344443
No 107
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=51.94 E-value=30 Score=32.77 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=45.9
Q ss_pred CCEEEEEecCCCccccCCCCCCCceeecCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCC-cchHHH
Q 018126 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSP-FTDDAT 196 (360)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~pKg~~~i~l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~-~t~~~t 196 (360)
+++++|+=|-=-.|||- =|.+.|+ -+++++.++++|+++...+ =.++|-||. ..++.+
T Consensus 2 ~~I~~IiQARmgStRLp---gKvLlpL---~~~pmI~~~lervrks~~~---------------d~ivvATS~~~~d~~l 60 (241)
T COG1861 2 SMILVIIQARMGSTRLP---GKVLLPL---GGEPMIEYQLERVRKSKDL---------------DKIVVATSDKEEDDAL 60 (241)
T ss_pred CcEEEEeeecccCccCC---cchhhhc---CCCchHHHHHHHHhccccc---------------cceEEEecCCcchhHH
Confidence 46788887755555652 2667777 6789999999998753322 236888988 457777
Q ss_pred HHHHhhcC
Q 018126 197 RKYFEGHK 204 (360)
Q Consensus 197 ~~~f~~~~ 204 (360)
.++..++.
T Consensus 61 ~~~~~~~G 68 (241)
T COG1861 61 EEVCRSHG 68 (241)
T ss_pred HHHHHHcC
Confidence 88887754
No 108
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=47.66 E-value=11 Score=25.98 Aligned_cols=15 Identities=47% Similarity=1.039 Sum_probs=12.3
Q ss_pred cCCCCCC---CCcEEEEE
Q 018126 203 HKYFGLE---SDQVTFFQ 217 (360)
Q Consensus 203 ~~~FGl~---~~~v~~f~ 217 (360)
|+|||++ .|||+||-
T Consensus 4 n~~FGie~~~sdqIWFYG 21 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFYG 21 (40)
T ss_pred hhhcCccccccccEEEee
Confidence 6799998 67999875
No 109
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=38.28 E-value=94 Score=27.40 Aligned_cols=27 Identities=33% Similarity=0.657 Sum_probs=19.1
Q ss_pred HHHHCCCchhccccccCCHHHHHHHHH
Q 018126 31 RLKDYGQEDAFALWDELSPDERDHLVK 57 (360)
Q Consensus 31 ~l~~~gQ~Hl~~~~~~l~~~ek~~L~~ 57 (360)
+|...|=-==|++|..|+.+||+.|++
T Consensus 22 KLD~cGiKLkL~~W~~l~~~eRq~Lv~ 48 (144)
T PF09655_consen 22 KLDTCGIKLKLSHWQQLSQEERQQLVD 48 (144)
T ss_pred ccchhheeeeHHHHhcCCHHHHHHHHc
Confidence 343344333468999999999998875
No 110
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=36.55 E-value=15 Score=34.97 Aligned_cols=85 Identities=18% Similarity=0.316 Sum_probs=51.4
Q ss_pred HHhhhhhcCCCEEEEEecCCCccccCCCCCCCcee----ecCCCCCccHHHHH----HHHHHHHHHHHhhhcCCCCCCCC
Q 018126 109 KMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVN----IGLPSGKSLFQLQA----ERILCVQRLAAQVTSEGGGSGSA 180 (360)
Q Consensus 109 ~~G~~~i~~gkvavvlLAGG~GTRLg~~~pKg~~~----i~l~s~ksllql~~----e~i~~lq~la~~~~~~~~~~~~~ 180 (360)
..++++.++|++..+++.||.++. +++.|..|-. .|+|...=+++... |.+.+..++ . +.
T Consensus 71 ~~A~~LYk~gk~~~ilvSGg~~~~-~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i----~-------~~ 138 (239)
T PRK10834 71 QGAINAYNSGKVNYLLLSGDNALQ-SYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKV----F-------DT 138 (239)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCC-CCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHH----h-------CC
Confidence 468999999999999999998754 6666665432 24444322222221 112211111 1 11
Q ss_pred ceeEEEecCCcchHHHHHHHhhcCCCCCC
Q 018126 181 AIHWYIMTSPFTDDATRKYFEGHKYFGLE 209 (360)
Q Consensus 181 ~ipl~IMTS~~t~~~t~~~f~~~~~FGl~ 209 (360)
-+++|.||..--..-.-.|++ +|++
T Consensus 139 -~~~iIVTq~fHm~RA~~ia~~---~Gi~ 163 (239)
T PRK10834 139 -NDFIIITQRFHCERALFIALH---MGIQ 163 (239)
T ss_pred -CCEEEECCHHHHHHHHHHHHH---cCCc
Confidence 146888888877777777775 6775
No 111
>TIGR02664 nitr_red_assoc conserved hypothetical protein. Most members of this protein family are found in the Cyanobacteria, and these mostly near nitrate reductase genes and molybdopterin biosynthesis genes. We note that molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. This protein is sometimes annotated as nitrate reductase-associated protein. Its function is unknown.
Probab=34.38 E-value=1e+02 Score=27.23 Aligned_cols=19 Identities=32% Similarity=0.685 Sum_probs=16.2
Q ss_pred hccccccCCHHHHHHHHHH
Q 018126 40 AFALWDELSPDERDHLVKD 58 (360)
Q Consensus 40 l~~~~~~l~~~ek~~L~~q 58 (360)
=|++|..|+.+||+.|++-
T Consensus 31 kL~hW~~ls~~eRq~Lv~~ 49 (145)
T TIGR02664 31 KLEHWQQLTQAEREELVRL 49 (145)
T ss_pred cHHHHhhCCHHHHHHHHhC
Confidence 3689999999999998764
No 112
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=33.59 E-value=25 Score=26.72 Aligned_cols=39 Identities=23% Similarity=0.544 Sum_probs=27.5
Q ss_pred CCHHHHHHHHH---HCCCch-------hc-cccccCCHHHHHHHHHHHhc
Q 018126 23 PPPQALLERLK---DYGQED-------AF-ALWDELSPDERDHLVKDIES 61 (360)
Q Consensus 23 ~~~~~l~~~l~---~~gQ~H-------l~-~~~~~l~~~ek~~L~~ql~~ 61 (360)
.+.++|..... ..|+++ || .+|...+++||+.+++.|.+
T Consensus 13 ~s~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~ 62 (65)
T TIGR03092 13 NTKEQLEATIVDAIQSGEEKMLPGLGVLFEAIWKHANEQEKDEMLETLEQ 62 (65)
T ss_pred CCHHHHHHHHHHHHhccchhcCCccHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455555554 335655 45 78999999999999998864
No 113
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=30.96 E-value=40 Score=28.06 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=22.0
Q ss_pred HCCCchhccccccCCHHHHHHHHHHHh
Q 018126 34 DYGQEDAFALWDELSPDERDHLVKDIE 60 (360)
Q Consensus 34 ~~gQ~Hl~~~~~~l~~~ek~~L~~ql~ 60 (360)
+.-++.+-+-+++|+++|+++|+++++
T Consensus 77 ~~~~~~lqkRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 77 QLTNEELQKRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 334566778889999999999999986
No 114
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=29.85 E-value=2e+02 Score=21.22 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=36.9
Q ss_pred eeEEEecCCcchHHHHHHHhhcCCCCCCCCcEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHH
Q 018126 182 IHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDM 261 (360)
Q Consensus 182 ipl~IMTS~~t~~~t~~~f~~~~~FGl~~~~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l 261 (360)
++++-.....+.+.+++++.+. +.+..+|.+-.+|+. -|+-+-..+|.++|-|..+
T Consensus 28 ~~~~~v~~~~~~~~~~~~l~~~------------~g~~~vP~v~i~g~~------------igg~~~~~~~~~~g~l~~~ 83 (84)
T TIGR02180 28 YEVVELDQLSNGSEIQDYLEEI------------TGQRTVPNIFINGKF------------IGGCSDLLALYKSGKLAEL 83 (84)
T ss_pred CEEEEeeCCCChHHHHHHHHHH------------hCCCCCCeEEECCEE------------EcCHHHHHHHHHcCChhhh
Confidence 4566666666677788888762 233467777666653 4566777888888888765
No 115
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=27.84 E-value=68 Score=24.45 Aligned_cols=39 Identities=23% Similarity=0.594 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHH---CCCch-------hc-cccccCCHHHHHHHHHHHhc
Q 018126 23 PPPQALLERLKD---YGQED-------AF-ALWDELSPDERDHLVKDIES 61 (360)
Q Consensus 23 ~~~~~l~~~l~~---~gQ~H-------l~-~~~~~l~~~ek~~L~~ql~~ 61 (360)
.+.+++...... .|+++ || ..|...++++|+++++.|.+
T Consensus 14 ~s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~ 63 (65)
T PF14098_consen 14 SSKEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNSDESEKQEMVNTLEQ 63 (65)
T ss_pred CCHHHHHHHHHHHHhccchhcCCchHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445566665553 35554 45 68999999999999988754
No 116
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=26.31 E-value=73 Score=24.49 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=26.8
Q ss_pred CHHHHHHHHHH---CCCch-------hc-cccccCCHHHHHHHHHHHhc
Q 018126 24 PPQALLERLKD---YGQED-------AF-ALWDELSPDERDHLVKDIES 61 (360)
Q Consensus 24 ~~~~l~~~l~~---~gQ~H-------l~-~~~~~l~~~ek~~L~~ql~~ 61 (360)
..++|...... .|+++ || .+|...+++||+.+++.|.+
T Consensus 17 s~eel~~~I~daIqsgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~ 65 (68)
T PRK02955 17 SKEELEGTIVDAIQSGEEKMLPGLGVLFEVIWKNADENEKDEMLETLEQ 65 (68)
T ss_pred CHHHHHHHHHHHHhccchhcCCcchhHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555555543 35554 55 78999999999999998864
No 117
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.49 E-value=4.5e+02 Score=24.37 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=57.7
Q ss_pred CCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCc-chHHHHHHHhhcCCCC--CCCCcEEEEEcCceeeee
Q 018126 149 GKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF-TDDATRKYFEGHKYFG--LESDQVTFFQQGTIPCVS 225 (360)
Q Consensus 149 ~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~-t~~~t~~~f~~~~~FG--l~~~~v~~f~Q~~~P~~~ 225 (360)
+-+..+-.++.|.+|..-+.+ .+ ||.+--.-.. ...+-+..+++ ++| +++. -..|..+-.+.
T Consensus 49 ~~~~~~~li~Ni~~Lr~~~~~--------~g--iPVvyTaqp~~qs~~draLL~d--~WGpgl~~~---p~~~~vv~~l~ 113 (218)
T COG1535 49 NCPLMEQLIANIAKLRIWCKQ--------AG--IPVVYTAQPGEQSPEDRALLKD--FWGPGLTAS---PEQQKVVDELA 113 (218)
T ss_pred CCccHHHHHHHHHHHHHHHHH--------cC--CcEEEEecCCcCCHHHHHHHHH--hcCCCCCCC---hhhhhhHHhcC
Confidence 344667778889888877765 24 6655555444 46666777765 554 4422 11111111111
Q ss_pred cC-CcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcC
Q 018126 226 KD-GRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (360)
Q Consensus 226 ~~-gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~v 274 (360)
++ +..+| .+| -|.|++.+.+++.|++.|+..+.+..|
T Consensus 114 P~~~D~vL-~kw-----------rYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 114 PGADDTVL-TKW-----------RYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred CCCCceEE-eee-----------ehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 10 11111 111 189999999999999999998766544
No 118
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=23.44 E-value=2e+02 Score=29.28 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCCCCCCceeec--CCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchHHHHHHHhhcCCCCCCCC
Q 018126 134 GSSDPKGCVNIG--LPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESD 211 (360)
Q Consensus 134 g~~~pKg~~~i~--l~s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~f~~~~~FGl~~~ 211 (360)
..||||-..+-- ..+|+.-|+-.++-|..|+. +++.+-..+++...+.+...+++..-.-+|. .
T Consensus 120 SiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~------------~~v~~~~~~vv~~~n~~~~~ei~~~l~~~g~--~ 185 (378)
T COG0641 120 SIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQA------------HGVDFNTLTVVNRQNVLHPEEIYHFLKSEGS--K 185 (378)
T ss_pred eccCchHhccccccCCCCCccHHHHHHHHHHHHH------------cCCcEEEEEEEchhHhhCHHHHHHHHHHccc--c
Confidence 378888665552 23588889999998887765 2445556666666665555555544333562 2
Q ss_pred cEEEEEcCceeeeecCCcccccCCCcccccCCCChhHhHHHhhCcHHHHHHHCCCeEEEEEcCCCcc
Q 018126 212 QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (360)
Q Consensus 212 ~v~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GhGgi~~aL~~sg~l~~l~~~Gi~yi~v~~vDN~L 278 (360)
.+.| .|++...+.-. +-..-...|-+-|.....+ ++.|.+.++.-+++...|+++
T Consensus 186 ~i~f-----ip~~~~~~~~~--~~~~~~~~~~~~~~fl~~~-----~~~~~~~~~~~i~i~~f~~~~ 240 (378)
T COG0641 186 FIQF-----IPLVESDNRGD--SLLEFSVTAEEYGQFLIAI-----FDEWVRHDVGRIFIQNFDQLL 240 (378)
T ss_pred eEEE-----EecccCCCCCc--cccccccCHHHHHHHHHHH-----HHHHHHhcCCeeeehhHHHHH
Confidence 3444 77775332210 0011123445555555555 778988888888888887765
No 119
>PF13945 NST1: Salt tolerance down-regulator
Probab=22.73 E-value=39 Score=31.15 Aligned_cols=32 Identities=31% Similarity=0.568 Sum_probs=23.4
Q ss_pred CchhccccccCCHHHHHHHHHHHhcCChHHHHHHHH
Q 018126 37 QEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIR 72 (360)
Q Consensus 37 Q~Hl~~~~~~l~~~ek~~L~~ql~~iD~~~~~~~~~ 72 (360)
++-|-.||..|+++||+.|+. ||-+.+...++
T Consensus 104 re~LkeFW~SL~eeERr~LVk----IEKe~VLkkmK 135 (190)
T PF13945_consen 104 REKLKEFWESLSEEERRSLVK----IEKEAVLKKMK 135 (190)
T ss_pred HHHHHHHHHccCHHHHHHHHH----hhHHHHHHHHH
Confidence 445668999999999988765 77666554443
No 120
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=88 Score=33.68 Aligned_cols=56 Identities=30% Similarity=0.543 Sum_probs=38.6
Q ss_pred CccccCCCCCCCceeecCC-CCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEecCCcchH--------HHHHH
Q 018126 129 QGTRLGSSDPKGCVNIGLP-SGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD--------ATRKY 199 (360)
Q Consensus 129 ~GTRLg~~~pKg~~~i~l~-s~ksllql~~e~i~~lq~la~~~~~~~~~~~~~~ipl~IMTS~~t~~--------~t~~~ 199 (360)
.=||||-..|||.+=+|+| +|||+|.- ..|.+ ..+|+|.|.-..=+| .+++.
T Consensus 328 kftrLGGKLPKGVLLvGPPGTGKTlLAR---------AvAGE----------A~VPFF~~sGSEFdEm~VGvGArRVRdL 388 (752)
T KOG0734|consen 328 KFTRLGGKLPKGVLLVGPPGTGKTLLAR---------AVAGE----------AGVPFFYASGSEFDEMFVGVGARRVRDL 388 (752)
T ss_pred HhhhccCcCCCceEEeCCCCCchhHHHH---------Hhhcc----------cCCCeEeccccchhhhhhcccHHHHHHH
Confidence 4489999999999999987 59998732 22222 337888887664444 46777
Q ss_pred Hhhc
Q 018126 200 FEGH 203 (360)
Q Consensus 200 f~~~ 203 (360)
|..-
T Consensus 389 F~aA 392 (752)
T KOG0734|consen 389 FAAA 392 (752)
T ss_pred HHHH
Confidence 7653
No 121
>CHL00195 ycf46 Ycf46; Provisional
Probab=21.59 E-value=9.6e+02 Score=25.23 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018126 20 AQSPPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLR 76 (360)
Q Consensus 20 ~~~~~~~~l~~~l~~~gQ~Hl~~~~~~l~~~ek~~L~~ql~~iD~~~~~~~~~~~~~ 76 (360)
.+-++.+++.+.|...-+.. =..++++..++|++.++.+....+..+++..+.
T Consensus 139 ~~lP~~~ei~~~l~~~~~~~----~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~ 191 (489)
T CHL00195 139 FPLPTESEIKKELTRLIKSL----NIKIDSELLENLTRACQGLSLERIRRVLSKIIA 191 (489)
T ss_pred ecCcCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566666666665443321 113678888889999999988888888776554
Done!