Query 018129
Match_columns 360
No_of_seqs 302 out of 1063
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 4.2E-54 1.4E-58 417.6 14.7 242 44-288 5-255 (306)
2 2o95_A 26S proteasome non-ATPa 100.0 1.3E-32 4.3E-37 248.5 18.8 171 58-252 5-179 (187)
3 4e0q_A COP9 signalosome comple 100.0 8.4E-30 2.9E-34 221.6 10.1 130 59-196 4-138 (141)
4 2znr_A AMSH-like protease; met 100.0 6.8E-29 2.3E-33 223.6 9.0 133 57-202 5-139 (178)
5 3rzv_A STAM-binding protein; u 99.9 9E-27 3.1E-31 214.7 11.4 131 59-202 40-172 (211)
6 4b4t_U RPN8, 26S proteasome re 99.9 3.5E-25 1.2E-29 217.3 22.2 200 60-285 5-208 (338)
7 2kks_A Uncharacterized protein 99.9 6.9E-22 2.4E-26 171.8 16.9 122 63-197 2-124 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 99.9 1.8E-22 6.1E-27 176.8 12.7 121 63-197 1-126 (153)
9 1oi0_A AF2198, hypothetical pr 99.7 5.6E-18 1.9E-22 143.2 9.5 109 62-196 3-111 (124)
10 2og4_A PRE-mRNA-splicing facto 99.3 3.2E-12 1.1E-16 120.0 7.0 127 61-202 38-170 (254)
11 2p8r_A PRP8, PRE-mRNA-splicing 99.2 2.7E-11 9.2E-16 114.7 8.5 125 61-202 39-173 (273)
12 3sbg_A PRE-mRNA-splicing facto 98.5 1.7E-07 5.9E-12 95.0 9.0 128 62-202 350-481 (565)
13 2qlc_A DNA repair protein RADC 51.4 1E+02 0.0034 25.3 9.9 84 66-162 7-91 (126)
14 2rh2_A Dihydrofolate reductase 26.8 22 0.00075 25.2 1.1 11 139-149 24-34 (62)
15 2q6k_A Chlorinase; complex wit 21.9 2.4E+02 0.0083 26.3 7.6 74 124-199 18-96 (283)
16 3twe_A Alpha4H; unknown functi 20.3 1E+02 0.0035 18.4 3.0 23 266-288 2-24 (27)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-54 Score=417.57 Aligned_cols=242 Identities=35% Similarity=0.523 Sum_probs=179.8
Q ss_pred hhHHHhcCCCCCCC---CCeeEEEECHHHHHHHHHHHhcCCCceeEEEeeeEe-cCCeEEEEEEEeCCcccCCCcccccc
Q 018129 44 QTKFQQEKPWVNDP---HYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKT-DGDAIIVMDAFALPVEGTETRVNAQA 119 (360)
Q Consensus 44 ~~~~~~~~pw~~~p---~~~~~V~Is~~vLlkIl~Ha~~~~p~EV~GlLLG~~-~~~~leVtd~F~lP~~~te~~v~~~~ 119 (360)
|+.+...++|..++ .++++|+|+++||+||++||+++.|.||||+|||.+ ++++++|+||||+|++++++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d 84 (306)
T 4b4t_V 5 QRLMMNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVD 84 (306)
T ss_dssp ------------CCCCCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCC
T ss_pred HHhhhccCCCCCCCCCCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCC
Confidence 34456677777755 479999999999999999999999999999999986 56689999999999999999988754
Q ss_pred ChHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccC
Q 018129 120 DAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPE 199 (360)
Q Consensus 120 e~~ey~~~ml~~~r~v~~~e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~~p~V~LVvDp~~t~~~G~v~ikAFRl~p~ 199 (360)
+ +|+.+|+++++++|+++++||||||||++|||||++||+||+.||.+.+++|+|||||.++. +|++.|+|||++|.
T Consensus 85 ~--~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~~~ 161 (306)
T 4b4t_V 85 D--VFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLIDT 161 (306)
T ss_dssp H--HHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECCHH
T ss_pred H--HHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEecCc
Confidence 3 68999999999999999999999999999999999999999999999999999999999986 79999999999987
Q ss_pred CCCCC----CCCCCcccccchhhhhhhcCc-cceeEEeeEEEecChhHHHHHHHHhccccccccCCCCCccChHHHHHHH
Q 018129 200 GYKPP----DEPISEYQTIPLNKIEDFGVH-CKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQI 274 (360)
Q Consensus 200 ~~~~~----~~~~~e~~~ip~~ki~d~g~~-~~~fyeLpV~i~~s~l~~~~L~~L~~~~w~~~Ls~s~ll~n~~~l~~~i 274 (360)
++.+. ....+.+..+|..++++++.+ ++.||+|||+++++++|+.+|..||+++|..+|+.+++..+.++..+++
T Consensus 162 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i 241 (306)
T 4b4t_V 162 GALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAAT 241 (306)
T ss_dssp HHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHH
T ss_pred cccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 64322 122344566788888888853 5779999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHhh
Q 018129 275 SDLAEKLEQAENQL 288 (360)
Q Consensus 275 ~dl~~~~~~~~~~~ 288 (360)
.++.+..+++...+
T Consensus 242 ~~m~~~~~~y~k~v 255 (306)
T 4b4t_V 242 KSMVKIAEQYSKRI 255 (306)
T ss_dssp HHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88877777766554
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=1.3e-32 Score=248.50 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=142.3
Q ss_pred CCeeEEEECHHHHHHHHHHHhc----CCCceeEEEeeeEecCCeEEEEEEEeCCcccCCCccccccChHHHHHHHHHHHH
Q 018129 58 HYFKRVKISALALLKMVVHARS----GGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNK 133 (360)
Q Consensus 58 ~~~~~V~Is~~vLlkIl~Ha~~----~~p~EV~GlLLG~~~~~~leVtd~F~lP~~~te~~v~~~~e~~ey~~~ml~~~r 133 (360)
.++++|+|+++|++||++||.+ +.+.+|||+|||...+++++|+|||++|+.+++++.+......+|+.+|+++++
T Consensus 5 ~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~ 84 (187)
T 2o95_A 5 LAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFK 84 (187)
T ss_dssp CSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHH
Confidence 4678999999999999999855 489999999999999999999999999998766532111112379999999999
Q ss_pred HhCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCCCCCCCCCcccc
Q 018129 134 QAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQT 213 (360)
Q Consensus 134 ~v~~~e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~~p~V~LVvDp~~t~~~G~v~ikAFRl~p~~~~~~~~~~~e~~~ 213 (360)
++++++++||||||||++ |..|+.+|..||.+.+++|+||+||.++ .+.+.++|||+.+....++.
T Consensus 85 ~v~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~--~~~l~i~ay~~~~~~~~~~~-------- 150 (187)
T 2o95_A 85 KVNARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPK--DLGLPTEAYISVEEVHDDGT-------- 150 (187)
T ss_dssp TTSSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTT--C-CCSEEEEEEEEECC------------
T ss_pred HhCCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCC--CCCcCeEEEEEechhcCCCC--------
Confidence 999999999999999975 6678888888999999999999999875 23499999999886543210
Q ss_pred cchhhhhhhcCccceeEEeeEEEecChhHHHHHHHHhcc
Q 018129 214 IPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNK 252 (360)
Q Consensus 214 ip~~ki~d~g~~~~~fyeLpV~i~~s~l~~~~L~~L~~~ 252 (360)
...++|.++|++|.++..|+..++.|...
T Consensus 151 ----------~~~~~F~~ip~~I~~~eaE~i~v~~l~~~ 179 (187)
T 2o95_A 151 ----------PTSKTFEHVTSEIGAEEAEEVGVEHLLRD 179 (187)
T ss_dssp ----------CCEEEEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred ----------cccCEEEEeeEEEecCcHHHHHHHHHHhc
Confidence 13579999999999999999999998654
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.96 E-value=8.4e-30 Score=221.60 Aligned_cols=130 Identities=18% Similarity=0.297 Sum_probs=108.5
Q ss_pred CeeEEEECHHHHHHHHHHHhc-----CCCceeEEEeeeEecCCeEEEEEEEeCCcccCCCccccccChHHHHHHHHHHHH
Q 018129 59 YFKRVKISALALLKMVVHARS-----GGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNK 133 (360)
Q Consensus 59 ~~~~V~Is~~vLlkIl~Ha~~-----~~p~EV~GlLLG~~~~~~leVtd~F~lP~~~te~~v~~~~e~~ey~~~ml~~~r 133 (360)
...+|+|+|+||++|++||.+ +.+.+|+|+|||..++++++|+|||++|++++++++..+ .+|+.+|+++++
T Consensus 4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~d---~~y~~~m~~~~k 80 (141)
T 4e0q_A 4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVIN---KDYYNKKEQQYK 80 (141)
T ss_dssp -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEEC---HHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceeec---HHHHHHHHHHHH
Confidence 346899999999999999954 358899999999999999999999999998887776543 389999999999
Q ss_pred HhCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEE
Q 018129 134 QAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 196 (360)
Q Consensus 134 ~v~~~e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~~p~V~LVvDp~~t~~~G~v~ikAFRl 196 (360)
++++++++||||||||+ ++..|+..|..|+++.+.+|+|++||.++. .|++.++||+.
T Consensus 81 ~v~~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~-~g~Lp~~ay~s 138 (141)
T 4e0q_A 81 QVFSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLSRS-VDHLPLKLFES 138 (141)
T ss_dssp HHSTTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCC-CTTHHHHHHCC
T ss_pred HhCCCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCccC-CCeEEEEEEEE
Confidence 99999999999999995 677888888899999999999999999864 67899999864
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.95 E-value=6.8e-29 Score=223.61 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=113.8
Q ss_pred CCCeeEEEECHHHHHHHHHHHhcCC--CceeEEEeeeEecCCeEEEEEEEeCCcccCCCccccccChHHHHHHHHHHHHH
Q 018129 57 PHYFKRVKISALALLKMVVHARSGG--TIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQ 134 (360)
Q Consensus 57 p~~~~~V~Is~~vLlkIl~Ha~~~~--p~EV~GlLLG~~~~~~leVtd~F~lP~~~te~~v~~~~e~~ey~~~ml~~~r~ 134 (360)
-.+++.|.|+..++.||+.||+... +.||||+|+|+..++.++|+++|++|+.++++++++..+. + .++.++
T Consensus 5 ~~~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~-e----~~~~~~- 78 (178)
T 2znr_A 5 MEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVE-E----LFNVQD- 78 (178)
T ss_dssp CCSCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHH-H----HHHHHH-
T ss_pred cCCcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHH-H----HHHHHH-
Confidence 3568899999999999999999864 4799999999999889999999999999988888765432 2 122232
Q ss_pred hCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018129 135 AGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (360)
Q Consensus 135 v~~~e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~~p~V~LVvDp~~t~~~G~v~ikAFRl~p~~~~ 202 (360)
++++.+||||||||+++||||.+|+++|+.||.+.+++|+||+||.++ .++|||++|.++.
T Consensus 79 -~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~------~~~afrl~~~g~~ 139 (178)
T 2znr_A 79 -QHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK------DTGIFRLTNAGML 139 (178)
T ss_dssp -HHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT------EEEEEEECHHHHH
T ss_pred -hCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC------cceEEEEECCcEe
Confidence 467999999999999999999999999999999999999999999753 3899999987754
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.94 E-value=9e-27 Score=214.72 Aligned_cols=131 Identities=18% Similarity=0.287 Sum_probs=113.4
Q ss_pred CeeEEEECHHHHHHHHHHHhcC--CCceeEEEeeeEecCCeEEEEEEEeCCcccCCCccccccChHHHHHHHHHHHHHhC
Q 018129 59 YFKRVKISALALLKMVVHARSG--GTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAG 136 (360)
Q Consensus 59 ~~~~V~Is~~vLlkIl~Ha~~~--~p~EV~GlLLG~~~~~~leVtd~F~lP~~~te~~v~~~~e~~ey~~~ml~~~r~v~ 136 (360)
-++.|.|+..++.+|+.||+.. .+.||||+|+|+..+++++|+++|..|+.++++++++..+.. +.++++ .
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e--~~~~~~---~-- 112 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEE--LFLIQD---Q-- 112 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHH--HHHHHH---H--
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHH--HHHHHh---h--
Confidence 5789999999999999999986 468999999999999999999999999999998887754322 222221 1
Q ss_pred CCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018129 137 RLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (360)
Q Consensus 137 ~~e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~~p~V~LVvDp~~t~~~G~v~ikAFRl~p~~~~ 202 (360)
+++.+||||||||+++||||.+|+++|..||.+.+++|+||+||.++ +++|||++|+|+.
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~------~lgaFrLtp~G~~ 172 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ------ETGFFKLTDHGLE 172 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT------EEEEEEECHHHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC------eeeEEEeccchhh
Confidence 47999999999999999999999999999999999999999999753 7999999998764
No 6
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.5e-25 Score=217.31 Aligned_cols=200 Identities=20% Similarity=0.268 Sum_probs=150.8
Q ss_pred eeEEEECHHHHHHHHHHHh---cCCCceeEEEeeeEecCCeEEEEEEEeCCcccCCCccccccChHHHHHHHHHHHHHhC
Q 018129 60 FKRVKISALALLKMVVHAR---SGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAG 136 (360)
Q Consensus 60 ~~~V~Is~~vLlkIl~Ha~---~~~p~EV~GlLLG~~~~~~leVtd~F~lP~~~te~~v~~~~e~~ey~~~ml~~~r~v~ 136 (360)
.++|.|||+||++|++|+. .+.+.+|+|.|||..++++++|+|||++|++.+++......-..+|+.+|++++++++
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 4789999999999999984 3567799999999999999999999999997766554332223489999999999999
Q ss_pred CCCceEEEEecCCCCCCccCHHhHHHHHhhhhcC-CCeEEEEEcCCCCccCCeeeEEEEEEccCCCCCCCCCCCcccccc
Q 018129 137 RLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQ-EPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIP 215 (360)
Q Consensus 137 ~~e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~-~p~V~LVvDp~~t~~~G~v~ikAFRl~p~~~~~~~~~~~e~~~ip 215 (360)
+++.+||||||+|. ++..|+..|..|+++. +.++++++|+... .|.+.++||+..+.....+.
T Consensus 85 ~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~--~~~lpi~aY~s~~~~~~~~~---------- 148 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQQ--GVGLPTDAYVAIEQVKDDGT---------- 148 (338)
T ss_dssp CSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCCC--SSSCSEEEEEEEEECSSCST----------
T ss_pred ccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCCC--CCCcceEEEEeehhccCCCc----------
Confidence 99999999999985 5556777788888876 4678899998653 67899999998664322110
Q ss_pred hhhhhhhcCccceeEEeeEEEecChhHHHHHHHHhccccccccCCCCCccChHHHHHHHHHHHHHHHHHH
Q 018129 216 LNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAE 285 (360)
Q Consensus 216 ~~ki~d~g~~~~~fyeLpV~i~~s~l~~~~L~~L~~~~w~~~Ls~s~ll~n~~~l~~~i~dl~~~~~~~~ 285 (360)
.....|.+||+++.....++..++.|.......+ ...+..++......|..|..+++...
T Consensus 149 --------~~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~~~~--~~~l~~~l~~~~~al~~L~~~l~~i~ 208 (338)
T 4b4t_U 149 --------STEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQA--AGGLSIRLTNQLKSLKGLQSKLKDVV 208 (338)
T ss_dssp --------TCEEEEEEECEEECSCHHHHHHHHHHHHHHSSCC-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccEEEEeeeEeecCcHHHHHHHHHHhccccCc--ccccchhHHHHHHHHHHHHHHHHHHH
Confidence 1246899999999999999999999875432222 22233455555555666655554443
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.88 E-value=6.9e-22 Score=171.79 Aligned_cols=122 Identities=21% Similarity=0.259 Sum_probs=99.0
Q ss_pred EEECHHHHHHHHHHHhcCCCceeEEEeeeEecCCeEEEEEEEeCCcccCC-CccccccChHHHHHHHHHHHHHhCCCCce
Q 018129 63 VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTE-TRVNAQADAYEYMVDYSQTNKQAGRLENA 141 (360)
Q Consensus 63 V~Is~~vLlkIl~Ha~~~~p~EV~GlLLG~~~~~~leVtd~F~lP~~~te-~~v~~~~e~~ey~~~ml~~~r~v~~~e~v 141 (360)
|+|+..++.+|+.||+++.|.|+||+|+|+.++++..|+++|++|+.... ++ +..++.+ +.++.+.++. +++.+
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~--f~~dp~~-~~~~~~~~~~--~g~~i 76 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEH--FSMDPRE-QLTAVKDMRK--NGWVM 76 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSS--CCCCHHH-HHHHHHHHHH--HTCEE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCce--EEECHHH-HHHHHHHHHH--CCCEE
Confidence 68999999999999999999999999999999888999999999975443 33 3345545 3455555654 45899
Q ss_pred EEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEc
Q 018129 142 VGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY 197 (360)
Q Consensus 142 VGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~~p~V~LVvDp~~t~~~G~v~ikAFRl~ 197 (360)
||||||||+.+||||.+|+.++ ..+++++||+++.. .+...++|||+.
T Consensus 77 vG~~HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~---~~~~~~~af~~~ 124 (146)
T 2kks_A 77 LGNFHSHPATPARPSAEDKRLA-----FDPSLSYLIISLAE---PQKPVCKSFLIK 124 (146)
T ss_dssp EEEEEEESSSCSSCCHHHHTTC-----CSSSCEEEEEECSC---SSSCEEEEEEEC
T ss_pred EEEEeCCCcCCCCCCHHHHHhh-----hcCCCeEEEEEccC---CCceEEEEEEEe
Confidence 9999999999999999999753 24788999999743 245789999994
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.88 E-value=1.8e-22 Score=176.79 Aligned_cols=121 Identities=19% Similarity=0.183 Sum_probs=97.5
Q ss_pred EEECHHHHHHHHHHHhcCCCceeEEEeeeEec-CCeEEEEEEEeCCcc--c-CCCccccccChHHHHHHHHHHHHHhCCC
Q 018129 63 VKISALALLKMVVHARSGGTIEVMGLMQGKTD-GDAIIVMDAFALPVE--G-TETRVNAQADAYEYMVDYSQTNKQAGRL 138 (360)
Q Consensus 63 V~Is~~vLlkIl~Ha~~~~p~EV~GlLLG~~~-~~~leVtd~F~lP~~--~-te~~v~~~~e~~ey~~~ml~~~r~v~~~ 138 (360)
++|++.++.+|+.||+++.|.|+||+|+|+.+ ++++.|+++|++|+. . +.+++.++. .+ +.++.+.+++ ++
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp--~~-~~~~~~~~~~--~g 75 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTA--DD-YRAADAAAQE--QG 75 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCC--CS-HHHHHHHHHH--HT
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECH--HH-HHHHHHHHHH--CC
Confidence 36889999999999999999999999999997 788999999999986 3 334555543 23 3445555554 35
Q ss_pred CceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCe-eeEEEEEEc
Q 018129 139 ENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGK-VEIGAFRTY 197 (360)
Q Consensus 139 e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~~p~V~LVvDp~~t~~~G~-v~ikAFRl~ 197 (360)
+.+||||||||+++||||.+|+..+ ..+++++||+++. .|+ ..++|||+.
T Consensus 76 ~~ivG~yHSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~----~~~~~~~~af~~~ 126 (153)
T 2kcq_A 76 LDVVGVYHSHPDHPARPSATDLEEA-----TFPGFTYVIVSVR----DGAPEALTAWALA 126 (153)
T ss_dssp CEEEEEEEECSSSSSSCCHHHHHTC-----CCTTSEEEEEEEE----TTEEEEEEEEEEC
T ss_pred CeEEEEEeCCCCCCCCCCHHHHHhh-----hcCCCeEEEEECC----CCCccEEEEEEEe
Confidence 8999999999999999999998643 3578999999963 455 589999995
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.74 E-value=5.6e-18 Score=143.24 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=80.3
Q ss_pred EEEECHHHHHHHHHHHhcCCCceeEEEeeeEecCCeEEEEEEEeCCcccCCCccccccChHHHHHHHHHHHHHhCCCCce
Q 018129 62 RVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENA 141 (360)
Q Consensus 62 ~V~Is~~vLlkIl~Ha~~~~p~EV~GlLLG~~~~~~leVtd~F~lP~~~te~~v~~~~e~~ey~~~ml~~~r~v~~~e~v 141 (360)
.|+|+..++.+|+.||+++.|.|+||+|+|+.. .|+++|++|+..++.. ..|..+|. .+++.+
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~----~v~~~~~~p~~~~~~~-------~~f~~~~~------~~~~~i 65 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVS-------AVIHLDML------PIGMKV 65 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----EECEEEECCCCC--------------------------CCCEE
T ss_pred EEEEcHHHHHHHHHHHHhcCCCeeEEEEecccC----EEEEEEECCCCCCCcC-------ceeeeeec------cCCCEE
Confidence 378999999999999999999999999999863 7899999994332211 12333332 257999
Q ss_pred EEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEE
Q 018129 142 VGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 196 (360)
Q Consensus 142 VGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~~p~V~LVvDp~~t~~~G~v~ikAFRl 196 (360)
||||||||+.+++||..|+.++. .++.++||+++.. +..++++|+.
T Consensus 66 vG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~----~~~~~~~f~~ 111 (124)
T 1oi0_A 66 FGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY----DENSWKCYNR 111 (124)
T ss_dssp EEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC----CTTCEEEEET
T ss_pred EEEEEECcCCCCccCHHHHHhhh-----cCCCEEEEEEccC----CCceEEEEec
Confidence 99999999999999999998643 3678999999743 2235777764
No 10
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3.2e-12 Score=119.97 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=104.1
Q ss_pred eEEEECHHHHHHHHHHHhcCCCceeEEEeeeEec---CCeEEEEEEEeCCcccCCCccccccCh--HHHHHHHHHHHHHh
Q 018129 61 KRVKISALALLKMVVHARSGGTIEVMGLMQGKTD---GDAIIVMDAFALPVEGTETRVNAQADA--YEYMVDYSQTNKQA 135 (360)
Q Consensus 61 ~~V~Is~~vLlkIl~Ha~~~~p~EV~GlLLG~~~---~~~leVtd~F~lP~~~te~~v~~~~e~--~ey~~~ml~~~r~v 135 (360)
.++.|+..++-|.+..|.. ..++||+|.|... .+..+|+.....|+.++.+.|+...+. .+|+.
T Consensus 38 ~t~vlPknLlkkFi~IAD~--~Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~--------- 106 (254)
T 2og4_A 38 NVYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD--------- 106 (254)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------
T ss_pred cEEEcCHHHHHHHHHHhhc--cceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------
Confidence 4789999999999988865 4689999999984 347899988888888888877664321 22211
Q ss_pred CCCCceEEEEecCCCCCCccCHHhHHHHHhhhh-cCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018129 136 GRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQ-FQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (360)
Q Consensus 136 ~~~e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~-~~~p~V~LVvDp~~t~~~G~v~ikAFRl~p~~~~ 202 (360)
-.++..+||-||||.-.|++|..||.||+.||. +.+.+|+||+.|. .|..+++||||+++||.
T Consensus 107 l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsft----pgs~sl~af~LT~~G~~ 170 (254)
T 2og4_A 107 TEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST----PGSVSLSAYNLTDEGYQ 170 (254)
T ss_dssp CTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEE----TTEEEEEEEEECHHHHH
T ss_pred hcCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecC----CCCceeEEEEcChhhhh
Confidence 257899999999999999999999999999998 5589999999974 68889999999998754
No 11
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.20 E-value=2.7e-11 Score=114.75 Aligned_cols=125 Identities=22% Similarity=0.298 Sum_probs=102.2
Q ss_pred eEEEECHHHHHHHHHHHhcCCCceeEEEeeeEec---CCeEEEEEEEeCCcccCCCccccccC--hHHHHHHHHHHHHHh
Q 018129 61 KRVKISALALLKMVVHARSGGTIEVMGLMQGKTD---GDAIIVMDAFALPVEGTETRVNAQAD--AYEYMVDYSQTNKQA 135 (360)
Q Consensus 61 ~~V~Is~~vLlkIl~Ha~~~~p~EV~GlLLG~~~---~~~leVtd~F~lP~~~te~~v~~~~e--~~ey~~~ml~~~r~v 135 (360)
.++.|+..++-|.+.-|.. ..++||+|.|+.- .+..+|+.....|+.++.+.|+...+ ..+|+
T Consensus 39 ~t~vlPknllkkFi~IADl--rTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l---------- 106 (273)
T 2p8r_A 39 YTYILPKNILKKFITISDL--RTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL---------- 106 (273)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT----------
T ss_pred cEEEecHHHHHHHHHHhhc--cceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh----------
Confidence 4788999999999987754 4689999999974 35789998888899888887776432 12331
Q ss_pred CCCCceEEEEecCCCCCCccCHHhHHHHHhhhhc---C--CCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018129 136 GRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQF---Q--EPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (360)
Q Consensus 136 ~~~e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~~---~--~p~V~LVvDp~~t~~~G~v~ikAFRl~p~~~~ 202 (360)
.++..+||-||||.-.|++|..||.||+.||.. . +..|+|+|.+. .|..+++||||+++||.
T Consensus 107 -~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft----pgs~sl~af~LT~~G~~ 173 (273)
T 2p8r_A 107 -RDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFT----PGSVSLTAYKLTPSGYE 173 (273)
T ss_dssp -TTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEE----TTEEEEEEEEECHHHHH
T ss_pred -ccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecC----CCCceeEEEEcChHHhh
Confidence 478999999999999999999999999999974 2 48899999973 68889999999988763
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.7e-07 Score=94.98 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=96.0
Q ss_pred EEEECHHHHHHHHHHHhcCCCceeEEEeeeEecC---CeEEEEEEEeCCcccCCCccccccChHHHHHHHHHHHHHhCCC
Q 018129 62 RVKISALALLKMVVHARSGGTIEVMGLMQGKTDG---DAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRL 138 (360)
Q Consensus 62 ~V~Is~~vLlkIl~Ha~~~~p~EV~GlLLG~~~~---~~leVtd~F~lP~~~te~~v~~~~e~~ey~~~ml~~~r~v~~~ 138 (360)
.+.|+..+|-|.+.-|-. ..++||+|.|..-. +..+|+.....|+.|+.+.|+.. ...+ .+... .-.+
T Consensus 350 tyVlPkNLLkKFI~IADl--rTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~lp~--he~~~----~l~d 420 (565)
T 3sbg_A 350 VYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQIS-NIPD--IGDLP----DTEG 420 (565)
T ss_dssp EEEEEHHHHHHHHHHSCS--SSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEEC-CCCC--CTTST----TCTT
T ss_pred EEEccHHHHHHHHHHhhc--cceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECC-CCCc--ccccc----cccc
Confidence 588999999999877653 46899999999863 46899987777888888877664 1100 00000 0256
Q ss_pred CceEEEEecCCCCCCccCHHhHHHHHhhh-hcCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018129 139 ENAVGWYHSHPGYGCWLSGIDVSTQMLNQ-QFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (360)
Q Consensus 139 e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ-~~~~p~V~LVvDp~~t~~~G~v~ikAFRl~p~~~~ 202 (360)
+..+||-||||.-.|++|..|+.+|+..- .....+|.++|.- ..|.+++.||.++|+||.
T Consensus 421 Le~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsf----tPGS~SLsAy~LT~eGye 481 (565)
T 3sbg_A 421 LELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFS----TPGSVSLSAYNLTDEGYQ 481 (565)
T ss_dssp CEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEE----ETTEEEEEEEEECHHHHH
T ss_pred CEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEe----cCCceEEEEEecCHhHHH
Confidence 89999999999999999999999997542 2223678888773 479999999999998863
No 13
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=51.38 E-value=1e+02 Score=25.33 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHhcCCCceeEEEeeeEecCCe-EEEEEEEeCCcccCCCccccccChHHHHHHHHHHHHHhCCCCceEEE
Q 018129 66 SALALLKMVVHARSGGTIEVMGLMQGKTDGDA-IIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGW 144 (360)
Q Consensus 66 s~~vLlkIl~Ha~~~~p~EV~GlLLG~~~~~~-leVtd~F~lP~~~te~~v~~~~e~~ey~~~ml~~~r~v~~~e~vVGW 144 (360)
++..+...++......+.|+..+|+ ....+. +.....| .|+-+.... .+.+-...++ + .+..-|..
T Consensus 7 s~~~v~~~l~~~l~~~~~E~f~vl~-Ld~~n~li~~~~l~----~Gt~~~~~v--~pRei~~~Al----~--~~A~~vIl 73 (126)
T 2qlc_A 7 GARDVFEYMKGRIPDETKEHLFVLF-LSTKNQILRHETIT----IGTLTASLI--HPREIFKAAI----R--ESAHSIIL 73 (126)
T ss_dssp SHHHHHHHHTTCCSCTTSCEEEEEE-ECTTCBEEEEEEEE----ESSCCGGGC--CHHHHHHHHH----H--TTCSEEEE
T ss_pred CHHHHHHHHHHHhCcCCCeEEEEEE-EcCCCCEEEEEEec----CCCCCcEee--cHHHHHHHHH----H--cCCcEEEE
Confidence 4455556665544556777766554 122333 2222222 233333222 2334333332 2 23578888
Q ss_pred EecCCCCCCccCHHhHHH
Q 018129 145 YHSHPGYGCWLSGIDVST 162 (360)
Q Consensus 145 YHSHP~~g~~~S~iDI~t 162 (360)
-|.||...+.||.-|+..
T Consensus 74 ~HNHPSG~~~PS~~D~~~ 91 (126)
T 2qlc_A 74 VHNHPSGDVQPSNADKQV 91 (126)
T ss_dssp EEECSSSCCSCCHHHHHH
T ss_pred EecCCCCCCCCCHHHHHH
Confidence 999999999999999984
No 14
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=26.76 E-value=22 Score=25.23 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=8.6
Q ss_pred CceEEEEecCC
Q 018129 139 ENAVGWYHSHP 149 (360)
Q Consensus 139 e~vVGWYHSHP 149 (360)
-.+||||.+.-
T Consensus 24 g~ivgwyct~l 34 (62)
T 2rh2_A 24 GQIVGWYCTNL 34 (62)
T ss_dssp EEEEEEECCSS
T ss_pred ceEeEEEEccc
Confidence 47999998654
No 15
>2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN; 1.55A {Salinispora tropica} PDB: 2q6i_A* 2q6o_A* 2q6l_A*
Probab=21.87 E-value=2.4e+02 Score=26.32 Aligned_cols=74 Identities=7% Similarity=0.042 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEE-EEcCCCCccCCeeeEEE----EEEcc
Q 018129 124 YMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAV-VIDPTRTVSAGKVEIGA----FRTYP 198 (360)
Q Consensus 124 y~~~ml~~~r~v~~~e~vVGWYHSHP~~g~~~S~iDI~tQ~~yQ~~~~p~V~L-VvDp~~t~~~G~v~ikA----FRl~p 198 (360)
|-..|.--+....++..||-.=|.-|-+..+-...-+. ..|.-+.+..|+| ||||--..++..+-+++ |-+.|
T Consensus 18 yVg~mKGVi~~i~p~~~IvDitH~I~pfdi~~aA~~L~--~~~~yfP~gTVhv~VVDPGVGt~Rr~i~v~~~~~~~fVgP 95 (283)
T 2q6k_A 18 AHALCKGVMYGVAPAATIVDITHDVAPFDVREGALFLA--DVPHSFPAHTVICAYVYPETGTATHTIAVRNEKGQLLVGP 95 (283)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCSCTTCHHHHHHHHT--THHHHSCTTEEEEEECCTTTTSSCCEEEEEETTSCEEEEE
T ss_pred cHHHHHHHHHhhCcCCeEEEecCCCCCcCHHHHHHHHH--HhhccCCCCCEEEEEECCCCCCCCceEEEEEcCCcEEEEc
Confidence 55666666777889999999999888665544433222 2333345557888 78996544344466666 54555
Q ss_pred C
Q 018129 199 E 199 (360)
Q Consensus 199 ~ 199 (360)
.
T Consensus 96 D 96 (283)
T 2q6k_A 96 N 96 (283)
T ss_dssp S
T ss_pred C
Confidence 3
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.33 E-value=1e+02 Score=18.38 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhh
Q 018129 266 NGDYVAGQISDLAEKLEQAENQL 288 (360)
Q Consensus 266 n~~~l~~~i~dl~~~~~~~~~~~ 288 (360)
|.+-+...++||.+.+.+....+
T Consensus 2 nadelykeledlqerlrklrkkl 24 (27)
T 3twe_A 2 NADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677888888888887776655
Done!