BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018130
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5E9F6|VPS72_BOVIN Vacuolar protein sorting-associated protein 72 homolog OS=Bos
taurus GN=VPS72 PE=2 SV=1
Length = 364
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 141/333 (42%), Gaps = 66/333 (19%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
R+ R T G R++ LL+ E EEDE + EE DD Y+ +Q + DE DSDFD
Sbjct: 7 RAPRKTAGNRLSGLLEKE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65
Query: 72 EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
DEP D E E +R K P K L + +K+ + S K E+++LP
Sbjct: 66 GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPAGSSQK--TREEKALLP 119
Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
E D D RKS R + + R + + +RK E+ +TQEE
Sbjct: 120 LELQDDGTDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171
Query: 191 MLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS-------------- 236
+L EA TE +NLR+LE R E KK+ + K GP + Y S
Sbjct: 172 LLREAKITEELNLRSLE-TYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEE 230
Query: 237 -----------------------------KDGYSYLEFSKGVSFQSELSTTSVP-YPERA 266
+ +++ FS +F+ P P R
Sbjct: 231 NVDVEGLDPAPMASALAARAGTGPVIPPARCSRTFITFSDDATFEEWFPQGRTPKIPVRE 290
Query: 267 VCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
VC VT PA YRDP T +PYAT AFKIIRE +
Sbjct: 291 VCPVTHRPALYRDPVTDIPYATARAFKIIREAY 323
>sp|Q5R5V9|VPS72_PONAB Vacuolar protein sorting-associated protein 72 homolog OS=Pongo
abelii GN=VPS72 PE=2 SV=1
Length = 364
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 142/333 (42%), Gaps = 66/333 (19%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
R+ R T G R++ LL+ E EEDE + EE DD Y+ +Q + DE DSDFD
Sbjct: 7 RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65
Query: 72 EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
DEP D E E +R K P K L + +K+ + S K E+++LP
Sbjct: 66 GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPAGSSQK--AREEKALLP 119
Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
E D +D RKS R + + R + + +RK E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171
Query: 191 MLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS-------------- 236
+L EA TE +NLR+LE R E KK+ + K GP + Y S
Sbjct: 172 LLREAKITEELNLRSLE-TYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEE 230
Query: 237 -----------------------------KDGYSYLEFSKGVSFQSELSTTSVP-YPERA 266
+ +++ FS +F+ P P R
Sbjct: 231 NVDIEGLDPAPSASALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVRE 290
Query: 267 VCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
VC VT PA YRDP T +PYAT AFKIIRE +
Sbjct: 291 VCPVTHRPALYRDPVTDIPYATARAFKIIREAY 323
>sp|Q15906|VPS72_HUMAN Vacuolar protein sorting-associated protein 72 homolog OS=Homo
sapiens GN=VPS72 PE=1 SV=1
Length = 364
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 142/333 (42%), Gaps = 66/333 (19%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
R+ R T G R++ LL+ E EEDE + EE DD Y+ +Q + DE DSDFD
Sbjct: 7 RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65
Query: 72 EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
DEP D E E +R K P K L + +K+ + S K E+++LP
Sbjct: 66 GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVNTPAGSSQK--AREEKALLP 119
Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
E D +D RKS R + + R + + +RK E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171
Query: 191 MLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS-------------- 236
+L EA TE +NLR+LE R E KK+ + K GP + Y S
Sbjct: 172 LLREAKITEELNLRSLE-TYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEE 230
Query: 237 -----------------------------KDGYSYLEFSKGVSFQSELSTTSVP-YPERA 266
+ +++ FS +F+ P P R
Sbjct: 231 NVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVRE 290
Query: 267 VCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
VC VT PA YRDP T +PYAT AFKIIRE +
Sbjct: 291 VCPVTHRPALYRDPVTDIPYATARAFKIIREAY 323
>sp|Q62481|VPS72_MOUSE Vacuolar protein sorting-associated protein 72 homolog OS=Mus
musculus GN=Vps72 PE=2 SV=2
Length = 368
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 145/336 (43%), Gaps = 68/336 (20%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQ-DALKEEENDDNYEEEQ-EIADEFDSDFD--- 71
R+ R T G R++ LL+ E EEDE + EE DD Y+ +Q + DE DSDFD
Sbjct: 7 RAPRKTAGNRLSGLLEAE-EEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDE 65
Query: 72 EDEPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILP 131
DEP D E E +R K P K L + +K+ + S K E+++LP
Sbjct: 66 GDEPSSDGEAEEPRRKRRVVTKAYKEPLKSL----RPRKVSTPASSSQK--AREEKTLLP 119
Query: 132 -ENHDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEE 190
E D +D RKS R + + R + + +RK E+ +TQEE
Sbjct: 120 LELQDDGSDS------RKSMRQSTA--EHTRQTFLRVQERQGQSRRRKGPHCERPLTQEE 171
Query: 191 MLLEAAQTEIMNLRNL---ERVLA-------REEEVKKRAIVHKAVYT------GPQLRY 234
+L EA TE +NLR+L ER+ A ++ + I + +V GP+
Sbjct: 172 LLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEEN 231
Query: 235 LSKDGY------------------------------SYLEFSKGVSFQSELSTTSVP-YP 263
+ +G +++ FS +F+ P P
Sbjct: 232 VDVEGLDPAPTASALAPHAGTGTGAAAATPPAHCSRTFITFSDDATFEEWFPQGRPPKVP 291
Query: 264 ERAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRERF 299
R VC VT PA YRDP T +PYAT AFKIIRE +
Sbjct: 292 VREVCPVTHRPALYRDPVTDIPYATARAFKIIREAY 327
>sp|Q6GNJ8|VPS72_XENLA Vacuolar protein sorting-associated protein 72 homolog OS=Xenopus
laevis GN=vps72 PE=2 SV=1
Length = 353
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 141/324 (43%), Gaps = 60/324 (18%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIA-DEFDSDFDEDEP 75
R+ R T G RM+ LL E E+D EE D+ Y E++ + DE DSDFD DE
Sbjct: 7 RAPRKTAGNRMSGLLQAEEEDDFYKTTYGGFNEESGDEEYNEDRSASEDEVDSDFDIDEG 66
Query: 76 EPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKK-KILSKLDSPDKDVKSNEQSILPENH 134
DE + ++ K+R++ TK K+ ++L + + PE
Sbjct: 67 --DEPTSDHEEDEPKKKRRVV------TKAYKEPIQLLKPKPKKPEAPPNTAAKSRPEKP 118
Query: 135 DVPND--VEGERIIRKSTRTAVVVRQAERDAIRAALQATMKPIKRKKEGEEKRMTQEEML 192
P D V+ + +R+ST + R + ++ K+K ++ +TQEE+L
Sbjct: 119 QEPPDDTVDSRKQMRQSTT------EHTRQTFLRVKERQIQSKKKKGPHLDRPLTQEELL 172
Query: 193 LEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLS---------------- 236
EA TE +N+R+LE R E +K+ + K GP +RY S
Sbjct: 173 EEAKITEEINIRSLEN-YERLEADRKKQVHKKRRCAGPTIRYHSMVMPLITELRMKEENV 231
Query: 237 ----------------KDGYSYLEFSKGVSFQ-----SELSTTSVPYPERAVCAVTGLPA 275
K S++ FS +F+ S+ SV R VC VT PA
Sbjct: 232 DVEGLDHEQTDRTHAGKCSRSFITFSDDETFERFFPRSKRGKFSV----RDVCPVTHKPA 287
Query: 276 KYRDPKTGLPYATKEAFKIIRERF 299
YRDP T +PY +AFKIIR+ +
Sbjct: 288 LYRDPITDIPYYNSKAFKIIRDAY 311
>sp|Q9VKM6|VPS72_DROME Vacuolar protein sorting-associated protein 72 homolog
OS=Drosophila melanogaster GN=YL-1 PE=1 SV=1
Length = 351
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 137/327 (41%), Gaps = 67/327 (20%)
Query: 17 RSSRVTRGKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDF---DED 73
RS R G ++ LL++E E+D + +E+E D YE++ E D DSDF + D
Sbjct: 5 RSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDEND 64
Query: 74 EPEPDEEVENEVDERVWTKKRLIFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPEN 133
EP D+E E KK+K+ + +K K E P
Sbjct: 65 EPVSDQEEAPE-------------------KKRKRGVVNTKAYKETKPAVKKETKATPAL 105
Query: 134 HDVPNDVEGERIIRKSTRTAVVVRQAERDAIRAA----LQATMKPIK----------RKK 179
H G + ++ R V + R +IR + QAT +K +K
Sbjct: 106 H---KKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKV 162
Query: 180 EGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYTGPQLRYLSKDG 239
E+ TQEE+L EA TE N ++LE+ E E KK++ K ++GP +RY S
Sbjct: 163 RVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELE-KKKSRPTKRTFSGPTIRYHSLTM 221
Query: 240 YSYLEFSKGVS---------------------------FQSELSTTSVPYPERAVCAVTG 272
+ + ++G + FQS + P +C +T
Sbjct: 222 PAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITR 281
Query: 273 LPAKYRDPKTGLPYATKEAFKIIRERF 299
LPA+Y DP T PY + +AFKI+RE +
Sbjct: 282 LPARYFDPITQQPYYSIQAFKILREAY 308
>sp|Q9P790|VPS72_SCHPO SWR complex protein 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=swc2 PE=1 SV=1
Length = 316
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 186 MTQEEMLLEAAQTEIMNLRNLERVLAREEE----VKKRAIVHKAVYTGPQLRYLSK---- 237
MTQ++ EAA+TE NL +L + EE+ +K+ A H+ + P L+++SK
Sbjct: 178 MTQQQRFEEAAKTEAQNLSSLRNYVHLEEQRRLRLKRNAAKHRQL-REPILKFISKTIST 236
Query: 238 -DGYSYLEFSKGVSFQSELSTTSVPY--PE-RAV-CAVTGLPAKYRDPKTGLPYATKEAF 292
DG + + L ++ P P+ RAV C +TG PA Y DP T LP + +AF
Sbjct: 237 EDGREASNYYVA-PLEHPLCHSAPPLQMPQHRAVECVITGKPAIYLDPVTQLPISNVQAF 295
Query: 293 KIIRERFVDKSS 304
+ +RE + + S
Sbjct: 296 QQVREVYNQRYS 307
>sp|Q03388|VPS72_YEAST Vacuolar protein sorting-associated protein 72 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS72 PE=1
SV=2
Length = 795
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 265 RAVCAVTGLPAKYRDPKTGLPYATKEAFKIIR 296
R C +T +Y DP+TG+PY+ EA+KII+
Sbjct: 707 RKKCLITNKECQYFDPRTGVPYSDVEAYKIIQ 738
>sp|Q9N1T2|RPGR_CANFA X-linked retinitis pigmentosa GTPase regulator OS=Canis familiaris
GN=RPGR PE=2 SV=1
Length = 1003
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 36 EEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDFDEDEPEPDEEVENEVDERVWTKKRL 95
EE +++ ++ ++ D +E+ + + +F E E D+EVE D+ +W ++
Sbjct: 716 EEPDSYLEGESESQQGTTDGFEQPESV------EFSSGEKEDDDEVE--TDQNLWYSRKF 767
Query: 96 IFPGKPLTKKKKKKKILSKLDSPDKDVKSNEQSILPENHDVPNDVEGERI 145
I G K++ + ILSK + D K + S +PE + D EG I
Sbjct: 768 IEQG----HKEETEHILSKFMA-KYDFKCDHLSEIPEEQEGAEDSEGSGI 812
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,181,768
Number of Sequences: 539616
Number of extensions: 6147145
Number of successful extensions: 67246
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 1494
Number of HSP's that attempted gapping in prelim test: 40633
Number of HSP's gapped (non-prelim): 13601
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)