Query 018130
Match_columns 360
No_of_seqs 193 out of 357
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4s_A Protein FON, zinc finge 94.3 0.022 7.6E-07 42.6 2.4 34 262-295 8-45 (59)
2 2yqq_A Zinc finger HIT domain- 94.2 0.05 1.7E-06 40.2 4.2 34 265-298 12-45 (56)
3 4fp9_B Mterf domain-containing 59.2 3 0.0001 40.4 1.3 12 25-36 268-279 (335)
4 2l92_A Histone family protein 28.0 20 0.00069 25.8 1.1 12 273-284 3-14 (50)
5 3a1q_C Ubiquitin interaction m 23.4 1.9E+02 0.0064 20.0 5.8 32 185-216 3-34 (45)
6 2rr9_C Putative uncharacterize 22.9 1.9E+02 0.0065 20.0 5.2 31 186-216 1-31 (46)
7 2d7c_C RAB11 family-interactin 20.2 1.3E+02 0.0043 20.7 3.9 24 187-211 2-25 (42)
8 2hv8_D RAB11 family-interactin 19.5 1.2E+02 0.0042 22.7 4.0 24 186-210 23-46 (64)
9 2zd7_A VPS75, vacuolar protein 15.2 59 0.002 30.3 1.7 68 24-95 197-264 (264)
10 3hvw_A Diguanylate-cyclase (DG 13.8 40 0.0014 27.8 0.1 9 277-285 1-9 (176)
No 1
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=94.27 E-value=0.022 Score=42.59 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=29.3
Q ss_pred CCCCcccccCC----CCcccCCCCCCCCCCCHHHHHHH
Q 018130 262 YPERAVCAVTG----LPAKYRDPKTGLPYATKEAFKII 295 (360)
Q Consensus 262 ~P~k~~C~iTg----~~a~Y~DP~T~lpy~~~~~fk~i 295 (360)
.++..+|.|=+ .+++|++|.=+++|+++.+|+.=
T Consensus 8 m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 8 MEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 34467999987 58999999999999999999953
No 2
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.18 E-value=0.05 Score=40.23 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=30.7
Q ss_pred CcccccCCCCcccCCCCCCCCCCCHHHHHHHHHc
Q 018130 265 RAVCAVTGLPAKYRDPKTGLPYATKEAFKIIRER 298 (360)
Q Consensus 265 k~~C~iTg~~a~Y~DP~T~lpy~~~~~fk~ir~~ 298 (360)
..+|.|=|.+++|++|.=+++|+++.+|+.-+..
T Consensus 12 ~~~C~vC~~~~kY~CPrC~~~yCSl~C~k~Hk~~ 45 (56)
T 2yqq_A 12 TVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQ 45 (56)
T ss_dssp CCCCTTTCSCCSEECTTTCCEESSHHHHHHHHHH
T ss_pred CCccCcCcCCCeeeCCCCCCCeeCHHHHHHHHhh
Confidence 4579998889999999999999999999988765
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=59.17 E-value=3 Score=40.45 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=6.9
Q ss_pred HHHHHHHhhhhh
Q 018130 25 KRMNKLLDDENE 36 (360)
Q Consensus 25 nRM~kLL~eE~e 36 (360)
+...+||+.|++
T Consensus 268 ~~F~k~~~~e~~ 279 (335)
T 4fp9_B 268 QVFKKLLAREEE 279 (335)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 344567766654
No 4
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=28.01 E-value=20 Score=25.75 Aligned_cols=12 Identities=58% Similarity=0.883 Sum_probs=9.5
Q ss_pred CCcccCCCCCCC
Q 018130 273 LPAKYRDPKTGL 284 (360)
Q Consensus 273 ~~a~Y~DP~T~l 284 (360)
.|++|+||.||.
T Consensus 3 ~~aKYR~p~~G~ 14 (50)
T 2l92_A 3 TVPKYRDPATGK 14 (50)
T ss_dssp CCCCEECTTTCC
T ss_pred CCCeeccCCCCC
Confidence 578999998873
No 5
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=23.37 E-value=1.9e+02 Score=19.98 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 018130 185 RMTQEEMLLEAAQTEIMNLRNLERVLAREEEV 216 (360)
Q Consensus 185 ~lTQEElL~EA~~TE~~N~~SL~~~~~~Eeek 216 (360)
-||.||.|+-|...=..-..+.+.-++.|++-
T Consensus 3 ~mtEEEq~ALA~rmSeQEA~~vn~~eE~Edel 34 (45)
T 3a1q_C 3 LGSEEEQFALALKMSEQEAREVNNQEEKEEEL 34 (45)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 58999999999988777778888766665553
No 6
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=22.94 E-value=1.9e+02 Score=20.04 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 018130 186 MTQEEMLLEAAQTEIMNLRNLERVLAREEEV 216 (360)
Q Consensus 186 lTQEElL~EA~~TE~~N~~SL~~~~~~Eeek 216 (360)
||.||.|+-|...=..-..+.+.-++.|++-
T Consensus 1 MtEEEq~ALA~kmSeQEA~~vn~~eE~E~~l 31 (46)
T 2rr9_C 1 MTEEEQFALALKMSEQEAREVNSQEEEEEEL 31 (46)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 7889999999887777777887766555543
No 7
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=20.17 E-value=1.3e+02 Score=20.74 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHH
Q 018130 187 TQEEMLLEAAQTEIMNLRNLERVLA 211 (360)
Q Consensus 187 TQEElL~EA~~TE~~N~~SL~~~~~ 211 (360)
|++||+....+-|+.| +-|+.|.-
T Consensus 2 S~~eL~~~l~~qee~n-~~Le~YID 25 (42)
T 2d7c_C 2 SRDELMEAIQKQEEIN-FRLQDYID 25 (42)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6889999988888888 66777763
No 8
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=19.54 E-value=1.2e+02 Score=22.66 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHH
Q 018130 186 MTQEEMLLEAAQTEIMNLRNLERVL 210 (360)
Q Consensus 186 lTQEElL~EA~~TE~~N~~SL~~~~ 210 (360)
+|++||+....+-|+.| +-|+.|.
T Consensus 23 ~s~deL~~~l~eqee~n-~~Le~YI 46 (64)
T 2hv8_D 23 VSRDELMEAIQKQEEIN-FRLQDYI 46 (64)
T ss_dssp SCHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHH
No 9
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=15.18 E-value=59 Score=30.29 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred cHHHHHHHhhhhhhhhhhhhhcccchhccccccccccccccccCCCCCCCCCCCChhhhhhhhhhhhhhccc
Q 018130 24 GKRMNKLLDDENEEDEAFWNQDALKEEENDDNYEEEQEIADEFDSDFDEDEPEPDEEVENEVDERVWTKKRL 95 (360)
Q Consensus 24 GnRM~kLL~eE~e~De~f~~~~~F~Eee~D~ey~~e~e~eD~~DSDFd~dE~e~dde~E~E~~Er~~rKKr~ 95 (360)
+-.|..+|-+++=-....| |..+..|.+.+..+++.|.-|-|.|+|++..+-|.|.+.++-..++++.
T Consensus 197 d~eig~~Ikd~I~P~al~y----f~g~~~d~~~~~~d~e~~~e~e~~d~~~~~~~~d~e~~~~~~~~k~~~~ 264 (264)
T 2zd7_A 197 GDSLASLFSEEIYPFCVKY----YAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRKV 264 (264)
T ss_dssp HHHHHHHHHHTHHHHHHHH----HHHHHHTTCC---------------------------------------
T ss_pred chhHHHHHHhhhccCHHHH----hcccccccccCcccccccccccccccccccccccccccccCccccccCC
No 10
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=13.81 E-value=40 Score=27.84 Aligned_cols=9 Identities=44% Similarity=0.408 Sum_probs=0.0
Q ss_pred cCCCCCCCC
Q 018130 277 YRDPKTGLP 285 (360)
Q Consensus 277 Y~DP~T~lp 285 (360)
|+||.||||
T Consensus 1 ~~D~lTgL~ 9 (176)
T 3hvw_A 1 MIDEPTGLY 9 (176)
T ss_dssp --------C
T ss_pred CCCccCCCh
Done!