Query 018130
Match_columns 360
No_of_seqs 193 out of 357
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 10:25:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018130.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018130hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4sa1 g.85.1.2 (A:8-53) Zinc 81.4 0.25 1.8E-05 33.4 1.3 29 266-294 8-37 (46)
2 d1y0jb1 g.37.1.2 (B:1-36) U-sh 44.8 8.5 0.00062 23.8 2.8 23 273-295 5-27 (36)
3 d2glia5 g.37.1.1 (A:229-257) F 44.5 2.6 0.00019 25.6 0.3 17 266-282 3-19 (29)
4 d2qaln1 g.39.1.7 (N:1-100) Rib 20.1 31 0.0023 25.8 2.9 23 255-277 50-72 (100)
5 d1z1ba1 d.10.1.4 (A:11-59) lam 16.9 17 0.0012 24.3 0.5 24 262-286 2-25 (49)
6 d1t95a1 a.5.8.1 (A:87-161) Hyp 15.9 25 0.0018 25.2 1.3 28 275-302 29-56 (75)
7 d1hc7a3 d.68.5.1 (A:404-477) C 8.1 77 0.0056 22.1 1.8 12 266-277 53-64 (74)
8 d1x4la2 g.39.1.3 (A:37-66) Fou 7.4 51 0.0037 19.4 0.3 15 314-328 4-18 (30)
9 d1jaea1 b.71.1.1 (A:379-471) A 6.6 1.8E+02 0.013 21.3 3.3 42 230-274 3-54 (93)
10 d1pl3a_ b.1.9.1 (A:) Cytochrom 5.8 60 0.0044 26.3 0.1 15 274-288 3-17 (186)
No 1
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.38 E-value=0.25 Score=33.45 Aligned_cols=29 Identities=24% Similarity=0.673 Sum_probs=24.9
Q ss_pred cccccCC-CCcccCCCCCCCCCCCHHHHHH
Q 018130 266 AVCAVTG-LPAKYRDPKTGLPYATKEAFKI 294 (360)
Q Consensus 266 ~~C~iTg-~~a~Y~DP~T~lpy~~~~~fk~ 294 (360)
.+|.|=+ .+++|++|.=+++|+++.+||.
T Consensus 8 ~lC~vC~~~~~KY~CP~C~~~yCSL~CyK~ 37 (46)
T d1x4sa1 8 GFCPAGEVQPARYTCPRCNAPYCSLRCYRT 37 (46)
T ss_dssp CSSCTTCCEEECEECTTTCCEESSHHHHHH
T ss_pred ccChhhhCccccccCCCCCCceechHHHhh
Confidence 3677665 4699999999999999999995
No 2
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=44.78 E-value=8.5 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.366 Sum_probs=19.5
Q ss_pred CCcccCCCCCCCCCCCHHHHHHH
Q 018130 273 LPAKYRDPKTGLPYATKEAFKII 295 (360)
Q Consensus 273 ~~a~Y~DP~T~lpy~~~~~fk~i 295 (360)
.||+|.||--||.|+++.....-
T Consensus 5 kparf~c~pcgirfss~stleah 27 (36)
T d1y0jb1 5 KPARFMCLPCGIAFSSPSTLEAH 27 (36)
T ss_dssp SCCCCBCTTTCCBCSCHHHHHHH
T ss_pred cccceeccccceeecChhHHHhh
Confidence 58999999999999998876543
No 3
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.51 E-value=2.6 Score=25.58 Aligned_cols=17 Identities=35% Similarity=0.847 Sum_probs=15.0
Q ss_pred cccccCCCCcccCCCCC
Q 018130 266 AVCAVTGLPAKYRDPKT 282 (360)
Q Consensus 266 ~~C~iTg~~a~Y~DP~T 282 (360)
-.|.|.|+..+|+||.+
T Consensus 3 Y~Ck~~gC~K~YtdPSS 19 (29)
T d2glia5 3 YVCKLPGCTKRYTDPSS 19 (29)
T ss_dssp EECCSTTTCCEESSHHH
T ss_pred eecccCCCCcccCCHHH
Confidence 47999999999999964
No 4
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
Probab=20.11 E-value=31 Score=25.80 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=15.6
Q ss_pred cCCCCCCCCCCcccccCCCCccc
Q 018130 255 LSTTSVPYPERAVCAVTGLPAKY 277 (360)
Q Consensus 255 ~~~~~~~~P~k~~C~iTg~~a~Y 277 (360)
+|...++.-.+..|.|||-|--|
T Consensus 50 LPrnss~tRirnRC~~TGR~Rg~ 72 (100)
T d2qaln1 50 LPRDSSPSRQRNRCRQTGRPHGF 72 (100)
T ss_dssp TTSTTCSTTCCCCCSSSCCSSSC
T ss_pred CCccchhHHHHhhhccCCCccee
Confidence 44445554567899999999443
No 5
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=16.90 E-value=17 Score=24.35 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=17.7
Q ss_pred CCCCcccccCCCCcccCCCCCCCCC
Q 018130 262 YPERAVCAVTGLPAKYRDPKTGLPY 286 (360)
Q Consensus 262 ~P~k~~C~iTg~~a~Y~DP~T~lpy 286 (360)
+|+.-+|-.-| --.|++|.||.-|
T Consensus 2 LPpNLY~k~~~-y~~yr~P~tGk~~ 25 (49)
T d1z1ba1 2 LPPNLYIRNNG-YYCYRDPRTGKEF 25 (49)
T ss_dssp CCTTEEEETTT-EEEEECTTTCCEE
T ss_pred CCccceeccCC-eEEeecCCCCcee
Confidence 35566888444 6789999999765
No 6
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.90 E-value=25 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=21.5
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHccccc
Q 018130 275 AKYRDPKTGLPYATKEAFKIIRERFVDK 302 (360)
Q Consensus 275 a~Y~DP~T~lpy~~~~~fk~ir~~~~~~ 302 (360)
..|.||.|+.||--.-+=+.|.++...-
T Consensus 29 ~~~VnP~T~~P~p~~rIE~Al~e~~~~v 56 (75)
T d1t95a1 29 RNTIDPRTNAPHPPSRIERALEEAKVHI 56 (75)
T ss_dssp HHEEBTTTTBCCCHHHHHHHHHHTTCCC
T ss_pred HhccCCCCCCCCCHHHHHHHHHhcCcCC
Confidence 4688999999999777777777765544
No 7
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]}
Probab=8.11 E-value=77 Score=22.14 Aligned_cols=12 Identities=33% Similarity=0.839 Sum_probs=10.5
Q ss_pred cccccCCCCccc
Q 018130 266 AVCAVTGLPAKY 277 (360)
Q Consensus 266 ~~C~iTg~~a~Y 277 (360)
..|.++|.||+|
T Consensus 53 ~kCi~cGk~a~~ 64 (74)
T d1hc7a3 53 GFCVRCGRPSAY 64 (74)
T ss_dssp CBCTTTCCBCCT
T ss_pred CeeeecCCcccc
Confidence 579999999975
No 8
>d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.37 E-value=51 Score=19.38 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=11.4
Q ss_pred hhhhhcccccccccc
Q 018130 314 TLFDSLSRKGFMATR 328 (360)
Q Consensus 314 ~~~~~~~~~~~~~~~ 328 (360)
.++=|++|+||-..|
T Consensus 4 kcsvslvgrgflter 18 (30)
T d1x4la2 4 KCSLSLVGRGFLTER 18 (30)
T ss_dssp SSCCBCTTSCCEECS
T ss_pred eeeEEEEeeeccccc
Confidence 356789999997654
No 9
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=6.59 E-value=1.8e+02 Score=21.29 Aligned_cols=42 Identities=21% Similarity=0.449 Sum_probs=25.6
Q ss_pred CeeEEEecCC---------ceeeEeecCCccccccCCCCCCCCCCccccc-CCCC
Q 018130 230 PQLRYLSKDG---------YSYLEFSKGVSFQSELSTTSVPYPERAVCAV-TGLP 274 (360)
Q Consensus 230 P~ir~~S~~~---------~~~i~f~d~~~~~~~~~~~~~~~P~k~~C~i-Tg~~ 274 (360)
|+.-||+... .-||-|.++..+...|. .-+|.-.||+| +|.+
T Consensus 3 ~v~nWwdng~nqIAF~RG~kGFvAiN~~~~l~~t~q---TgLPaG~YCDVisG~~ 54 (93)
T d1jaea1 3 QVENWWSNDDNQIAFSRGSQGFVAFTNGGDLNQNLN---TGLPAGTYCDVISGEL 54 (93)
T ss_dssp CEEEEEECSSSEEEEEETTTEEEEEESSSCEEEEEE---CCCCSEEEECTTTCCE
T ss_pred cccccEECCCcEEEEecCCCcEEEEeCCcccceeEe---cCCCCcceeEeeeccc
Confidence 6777886542 25777766555544443 24677889986 4443
No 10
>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Probab=5.79 E-value=60 Score=26.35 Aligned_cols=15 Identities=27% Similarity=0.793 Sum_probs=11.9
Q ss_pred CcccCCCCCCCCCCC
Q 018130 274 PAKYRDPKTGLPYAT 288 (360)
Q Consensus 274 ~a~Y~DP~T~lpy~~ 288 (360)
.+.|.||.|||-|..
T Consensus 3 ~~~y~d~~tgi~f~~ 17 (186)
T d1pl3a_ 3 ASQFTDPTTGFQFTG 17 (186)
T ss_dssp CEEEECTTTCCEEEE
T ss_pred cCceECCCCCeEEEe
Confidence 367999999998754
Done!