Query 018131
Match_columns 360
No_of_seqs 172 out of 249
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03181 BURP: BURP domain; I 100.0 6E-90 1.3E-94 640.6 20.1 212 143-355 1-216 (216)
2 PF10950 DUF2775: Protein of u 95.2 0.0088 1.9E-07 51.2 1.3 25 25-49 3-27 (108)
3 KOG0022 Alcohol dehydrogenase, 60.4 6.6 0.00014 40.1 2.6 31 293-329 29-59 (375)
4 PF08727 P3A: Poliovirus 3A pr 53.8 3.6 7.8E-05 31.8 -0.4 16 33-48 11-26 (57)
5 smart00167 VPS9 Domain present 25.8 30 0.00065 29.8 0.7 35 211-245 75-109 (117)
6 PF11323 DUF3125: Protein of u 24.1 47 0.001 25.1 1.4 38 314-354 9-50 (50)
7 PF14020 DUF4236: Protein of u 24.0 78 0.0017 24.2 2.6 14 78-91 13-26 (55)
8 COG1062 AdhC Zn-dependent alco 22.3 99 0.0022 32.0 3.7 28 294-321 15-46 (366)
9 COG1064 AdhP Zn-dependent alco 21.2 41 0.00089 34.3 0.8 29 308-337 34-62 (339)
10 KOG1641 Mitochondrial chaperon 16.3 77 0.0017 27.3 1.2 58 92-151 41-100 (104)
No 1
>PF03181 BURP: BURP domain; InterPro: IPR004873 The BURP domain is a ~230-residue module, which has been named for the four members of the group initially identified, BNM2, USP, RD22, and PG1beta. It is found in the C-terminal part of a number of plant cell wall proteins, which are defined not only by the BURP domain, but also by the overall similarity in their modular construction. The BURP domain proteins consists of either three or four modules: (i) an N-terminal hydrophobic domain - a presumptive transit peptide, joined to (ii) a short conserved segment or other short segment, (iii) an optional segment consisting of repeated units which is unique to each member, and (iv) the C-terminal BURP domain. Although the BURP domain proteins share primary structural features, their expression patterns and the conditions under which they are expressed differ. The presence of the conserved BURP domain in diverse plant proteins suggests an important and fundamental functional role for this domain []. It is possible that the BURP domain represents a general motif for localization of proteins within the cell wall matrix. The other structural domains associated with the BURP domain may specify other target sites for intermolecular interactions []. Some proteins known to contain a BURP domain are listed below [, , ]: Brassica protein BNM2, which is expressed during the induction of microspore embryogenesis. Field bean USPs, abundant non-storage seed proteins with unknown function. Soybean USP-like proteins ADR6 (or SALI5-4A), an auxin-repressible, aluminium-inducible protein and SALI3-2, a protein that is up-regulated by aluminium. Soybean seed coat BURP-domain protein 1 (SCB1). It might play a role in the differentiation of the seed coat parenchyma cells. Arabidopsis RD22 drought induced protein. Maize ZRP2, a protein of unknown function in cortex parenchyma. Tomato PG1beta, the beta-subunit of polygalacturonase isozyme 1 (PG1), which is expressed in ripening fruits. Cereal RAFTIN. It is essential specifically for the maturation phase of pollen development.
Probab=100.00 E-value=6e-90 Score=640.58 Aligned_cols=212 Identities=68% Similarity=1.147 Sum_probs=205.4
Q ss_pred ccccccCCCCCCceeeecCCCCCC--CCcccchhhccccCCCCCChHHHhhhcCCCCCCHHHHHHHHHHHHccCCCCCCc
Q 018131 143 ALFFLEKDLHPGMKMNLHFTQTSN--GATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGE 220 (360)
Q Consensus 143 ~~FF~e~dL~pG~~m~l~f~~~~~--~~~FLPR~vAdsIPFSs~kl~~iL~~FsI~~~S~~A~~m~~TL~~CE~p~~~GE 220 (360)
++||+|+||++|++|+++|++..+ .++||||++||+||||+++|++||++|+|+++|+||++|++||++||.++++||
T Consensus 1 ~~fF~e~dL~~G~~m~l~f~~~~~~~~~~fLpr~~A~siPfss~~l~~iL~~Fsi~~~S~~A~~m~~Tl~~Ce~~~~~GE 80 (216)
T PF03181_consen 1 ALFFLEKDLHPGKKMPLYFPKSDNSAKRPFLPRQVADSIPFSSSKLPEILQMFSIPPGSPMAKAMKNTLEECESPPIKGE 80 (216)
T ss_pred CcccCHHHCCCCceeeecCCCCCCCcccccCCHHHhccCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCc
Confidence 489999999999999999998754 689999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhhHHHHHhhhcCC-ccEEeeeeeccCCcceeeEEEeeeeeecC-CcceeeecccCCceEEeecccCceeEEE
Q 018131 221 QKYCATSLESMIDFSTSKLGK-SVQAISTEVKKGTKMQTYTIAAGVKQMAA-DKSVVCHKQNYPYAVFYCHATQTTRAYM 298 (360)
Q Consensus 221 ~K~CaTSLESMvdFa~S~LG~-nv~a~sT~~~~~~~~q~YtV~~~Vk~i~g-~k~V~CH~~~yPYaVfYCH~~~~T~~Y~ 298 (360)
+|+||||||||+||++|+||+ |++++||++..+.+.|+|+|. +|+++.| +++|+||+|+|||+|||||.++.||+|+
T Consensus 81 ~k~CaTSLESMvdF~~s~LG~~~v~a~st~~~~~~~~~~y~V~-~v~~i~~~~~~V~CH~~~yPYaVyyCH~~~~t~~y~ 159 (216)
T PF03181_consen 81 TKYCATSLESMVDFAVSKLGTRNVRALSTEVPKSTPLQNYTVE-GVKKIGGGDKSVVCHKMPYPYAVYYCHSIPPTRVYM 159 (216)
T ss_pred CccCcCCHHHHHHHHHHhcCCCccEEEeccccCCCCCccEEEE-eeeeecCCCceEEEcccCCceeEEEeeecCceeEEE
Confidence 999999999999999999997 899999999877889999996 9999987 8999999999999999999999999999
Q ss_pred EeeecCCCCceeEEEeeecCCCCCCCCchhhhhhccCCCCcceeeeecCCcEEEeeC
Q 018131 299 VPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 355 (360)
Q Consensus 299 V~L~g~dG~~v~AvAVCH~DTS~Wnp~H~aF~~L~vKPG~~pVCHflp~~~ivWvp~ 355 (360)
|+|+|+||++++||||||+|||.|||+|+||++||+|||++|||||+++|+|+||||
T Consensus 160 V~l~g~dg~~~~avavCH~DTS~W~p~h~aF~~L~vkPG~~~VCHf~~~~~ivWv~~ 216 (216)
T PF03181_consen 160 VPLVGEDGTKVEAVAVCHLDTSGWNPDHPAFQVLGVKPGTVPVCHFLPNDHIVWVPN 216 (216)
T ss_pred EEEeecCCceEEEEEEEecCCCCCCcchHHHHHhCCCCCCcceEEEeeCCeEEEccC
Confidence 999999999999999999999999999999999999999999999999999999997
No 2
>PF10950 DUF2775: Protein of unknown function (DUF2775); InterPro: IPR024489 This eukaryotic family includes a number of plant organ-specific proteins. While their function is unknown, their predicted amino acid sequence suggests that these proteins could be exported and glycosylated [].
Probab=95.17 E-value=0.0088 Score=51.23 Aligned_cols=25 Identities=44% Similarity=0.910 Sum_probs=22.6
Q ss_pred hhhhhhhcCCCCCccHHHHHhcCCC
Q 018131 25 PELYWKTVLPNSPMPKAVKDLLQPD 49 (360)
Q Consensus 25 ~e~YW~s~lPnTPmPkal~~LL~p~ 49 (360)
...|||.|+=..|||+||++||+..
T Consensus 3 ~geYWK~vMKDqpMPeaIqgLl~~~ 27 (108)
T PF10950_consen 3 LGEYWKDVMKDQPMPEAIQGLLNQD 27 (108)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHhc
Confidence 3679999999999999999999864
No 3
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.43 E-value=6.6 Score=40.10 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=23.2
Q ss_pred ceeEEEEeeecCCCCceeEEEeeecCCCCCCCCchhh
Q 018131 293 TTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAF 329 (360)
Q Consensus 293 ~T~~Y~V~L~g~dG~~v~AvAVCH~DTS~Wnp~H~aF 329 (360)
+-++++|.+ |+.+.++||+|-.-|+-+++.+
T Consensus 29 pPka~EVRI------KI~~t~vCHTD~~~~~g~~~~~ 59 (375)
T KOG0022|consen 29 PPKAHEVRI------KILATGVCHTDAYVWSGKDPEG 59 (375)
T ss_pred CCCCceEEE------EEEEEeeccccceeecCCCccc
Confidence 345666655 6889999999999999765433
No 4
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=53.79 E-value=3.6 Score=31.79 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=11.5
Q ss_pred CCCCCccHHHHHhcCC
Q 018131 33 LPNSPMPKAVKDLLQP 48 (360)
Q Consensus 33 lPnTPmPkal~~LL~p 48 (360)
+++||+|.+|.|||+.
T Consensus 11 ~~~~P~P~~I~DLL~S 26 (57)
T PF08727_consen 11 VEETPPPPAIADLLRS 26 (57)
T ss_dssp SSS--SS-TTHHHHHH
T ss_pred ccCCCCCHHHHHHHHh
Confidence 5899999999999975
No 5
>smart00167 VPS9 Domain present in VPS9. Domain present in yeast vacuolar sorting protein 9 and other proteins.
Probab=25.81 E-value=30 Score=29.85 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.7
Q ss_pred HccCCCCCCccccccCchhhHHHHHhhhcCCccEE
Q 018131 211 ECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQA 245 (360)
Q Consensus 211 ~CE~p~~~GE~K~CaTSLESMvdFa~S~LG~nv~a 245 (360)
.|...-..||.-||.|++|+-++|..+..++++..
T Consensus 75 f~~~~~l~gE~gY~lT~l~aAv~fi~~l~~~~l~~ 109 (117)
T smart00167 75 FLEPSLLTGEGGYYLTSLSAALALIKGLTEAHALP 109 (117)
T ss_pred HCCccccccHHHHHHHHHHHHHHHHHHCCHHhCCc
Confidence 45444578999999999999999998877655443
No 6
>PF11323 DUF3125: Protein of unknown function (DUF3125); InterPro: IPR021472 This family of proteins with unknown function appears to be restricted to Staphylococcus.
Probab=24.11 E-value=47 Score=25.13 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=30.6
Q ss_pred eeecCC----CCCCCCchhhhhhccCCCCcceeeeecCCcEEEee
Q 018131 314 VCHTDT----SAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 354 (360)
Q Consensus 314 VCH~DT----S~Wnp~H~aF~~L~vKPG~~pVCHflp~~~ivWvp 354 (360)
+|++-| ..|..+ |-+|+-.|-.+--|++-..-+++|+|
T Consensus 9 r~~~p~~~~~~~~e~~---fS~Lga~~q~a~yckl~f~~~L~~~P 50 (50)
T PF11323_consen 9 RCPTPTCIVCRNWESN---FSMLGAHFQSANYCKLNFPRLLCWGP 50 (50)
T ss_pred cCCCCceeeeeeeccc---chhhccccceeeeEEecceeEEEecC
Confidence 455544 568765 88999888888889999999999987
No 7
>PF14020 DUF4236: Protein of unknown function (DUF4236)
Probab=24.04 E-value=78 Score=24.20 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=7.4
Q ss_pred ceeeecCccccccc
Q 018131 78 THVNVGGKGVGVNT 91 (360)
Q Consensus 78 ~~~~~~~~~~~~~~ 91 (360)
..+|+.|.|+.+..
T Consensus 13 vrlN~Sk~G~s~S~ 26 (55)
T PF14020_consen 13 VRLNLSKSGVSVSV 26 (55)
T ss_pred eEEEEcCCceeEEe
Confidence 45555555555443
No 8
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=22.29 E-value=99 Score=32.00 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=18.3
Q ss_pred eeEEEEeeecCC-C---CceeEEEeeecCCCC
Q 018131 294 TRAYMVPLEGAD-G---TKAKAAAVCHTDTSA 321 (360)
Q Consensus 294 T~~Y~V~L~g~d-G---~~v~AvAVCH~DTS~ 321 (360)
-.+-+|.|.+.. | -|++|-+|||+|-+.
T Consensus 15 l~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~ 46 (366)
T COG1062 15 LEIEEVDLDPPRAGEVLVRITATGVCHTDAHT 46 (366)
T ss_pred eEEEEEecCCCCCCeEEEEEEEeeccccchhh
Confidence 345556665543 2 268999999999743
No 9
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=21.21 E-value=41 Score=34.29 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=20.2
Q ss_pred ceeEEEeeecCCCCCCCCchhhhhhccCCC
Q 018131 308 KAKAAAVCHTDTSAWNPKHLAFQVLKVKPG 337 (360)
Q Consensus 308 ~v~AvAVCH~DTS~Wnp~H~aF~~L~vKPG 337 (360)
++++.+|||+|-..|.-+-+ ...|-+-||
T Consensus 34 ~v~~~GVChsDlH~~~G~~~-~~~~P~ipG 62 (339)
T COG1064 34 KVEACGVCHTDLHVAKGDWP-VPKLPLIPG 62 (339)
T ss_pred EEEEEeecchhhhhhcCCCC-CCCCCccCC
Confidence 68999999999998886433 333444454
No 10
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=16.27 E-value=77 Score=27.35 Aligned_cols=58 Identities=34% Similarity=0.363 Sum_probs=27.0
Q ss_pred CCCCCCcccccccCcceecccCCCCceeecc--CCcccccccccccccCCCCcccccccCCC
Q 018131 92 GKPDKRTSVGVGKGGVSVSTGHKGKPVYVGV--SPFNYVYAANENQLHDDPNTALFFLEKDL 151 (360)
Q Consensus 92 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~y~~~~~q~~~~~~~~~FF~e~dL 151 (360)
+|+..||-+.||.|..+- .|. --|+.|.+ .=..-.|..++-.+.++.+--+||.|++|
T Consensus 41 ~K~~~g~VvavGpG~~~~-~G~-~v~~~Vk~Gd~VLlpeygGt~V~l~~~~~~~~fr~e~~l 100 (104)
T KOG1641|consen 41 GKLLQGTVVAVGPGSRDK-GGE-IVPVSVKVGDRVLLPEYGGTKVKLGDEDEYHLFRDEDDL 100 (104)
T ss_pred cccceEEEEEEcCccccC-CCC-CcCccccCCCEEEeeccCCcEEeccCCceeEEecchhhh
Confidence 455556666666655541 111 11222222 11123455555555544455667776665
Done!