Query 018131
Match_columns 360
No_of_seqs 172 out of 249
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j4t_A Angiogenin-4; angiogene 22.0 20 0.00067 30.7 0.1 29 2-30 2-30 (144)
2 2heq_A YORP protein; SH3-like, 16.8 27 0.00091 27.3 -0.2 37 110-153 31-68 (84)
3 2zxx_A Geminin; coiled-coil, c 11.6 54 0.0019 25.8 0.2 11 22-32 11-21 (79)
4 1edn_A Endothelin-1; signal po 10.9 31 0.0011 21.8 -1.1 6 285-290 12-17 (26)
5 1obb_A Maltase, alpha-glucosid 10.9 75 0.0026 32.1 1.0 42 308-354 167-208 (480)
6 2vqc_A Hypothetical 13.2 kDa p 10.6 1.1E+02 0.0036 25.1 1.7 34 185-220 31-65 (118)
7 1srb_A Sarafotoxins precursor; 8.7 35 0.0012 21.6 -1.5 6 285-290 12-17 (26)
8 1ng7_A Poliovirus 3A-N, genome 8.4 64 0.0022 24.2 -0.4 14 35-48 15-28 (60)
9 1wlq_A Geminin; coiled-coil; 2 8.4 85 0.0029 24.9 0.2 11 22-32 15-25 (83)
10 2lde_A Sarafotoxin-I3; endothe 7.8 40 0.0014 21.3 -1.5 6 285-290 12-17 (26)
No 1
>2j4t_A Angiogenin-4; angiogenesis, endonuclease, differentiation, cancer, nuclease, hydrolase, ribonuclease, developmental protein; 2.02A {Mus musculus}
Probab=21.96 E-value=20 Score=30.74 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=2.7
Q ss_pred CcchHHHHHHHHHHHhhccCCCChhhhhh
Q 018131 2 EFHLLPILAFLSLALVASHADISPELYWK 30 (360)
Q Consensus 2 ef~~~~i~~~l~l~~v~s~a~lp~e~YW~ 30 (360)
.+.++++|+||+|.|...+.++..|..|+
T Consensus 2 ~~~~~~llll~ll~l~~~~~s~~~~~~~~ 30 (144)
T 2j4t_A 2 TMSPCPLLLVFVLGLVVIPPTLAQNERYE 30 (144)
T ss_dssp ------------------------CHHHH
T ss_pred chHHHHHHHHHHHHHhccccccccchHHH
Confidence 34555666666666666777776655554
No 2
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=16.84 E-value=27 Score=27.32 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=21.4
Q ss_pred cccCCCCceeeccCCcccccccc-cccccCCCCcccccccCCCCC
Q 018131 110 STGHKGKPVYVGVSPFNYVYAAN-ENQLHDDPNTALFFLEKDLHP 153 (360)
Q Consensus 110 ~~~~~~~~~~~~~~p~~~~y~~~-~~q~~~~~~~~~FF~e~dL~p 153 (360)
+.|.|||.|... +-.+|.|+-+ ++. .+ .||.|.+|.|
T Consensus 31 hVGrkGkIie~~-hSa~YDYaVsdetG-----dI-t~fKEhElnp 68 (84)
T 2heq_A 31 HVGRKGKIIEHL-HSATYDYAVSDETG-----DI-TYFKEHELTP 68 (84)
T ss_dssp CCSSEEEEEEEC-CCSSCSEEEEETTS-----CE-EEECGGGEEE
T ss_pred ccccccchhhhh-hhheeeeeeecccC-----ce-eeeecccccc
Confidence 445666655433 4467888754 222 11 3788887765
No 3
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=11.60 E-value=54 Score=25.79 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=8.1
Q ss_pred CCChhhhhhhc
Q 018131 22 DISPELYWKTV 32 (360)
Q Consensus 22 ~lp~e~YW~s~ 32 (360)
.-|+|.||+-+
T Consensus 11 e~Pse~YWk~l 21 (79)
T 2zxx_A 11 ENPSSQYWKEV 21 (79)
T ss_dssp CCTTCTHHHHH
T ss_pred CCCcHHHHHHH
Confidence 34889999854
No 4
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=10.87 E-value=31 Score=21.81 Aligned_cols=6 Identities=50% Similarity=1.658 Sum_probs=4.0
Q ss_pred EEeecc
Q 018131 285 VFYCHA 290 (360)
Q Consensus 285 VfYCH~ 290 (360)
|||||.
T Consensus 12 ~YfChl 17 (26)
T 1edn_A 12 VYFCHL 17 (26)
T ss_dssp TTTSTT
T ss_pred EEEEec
Confidence 577774
No 5
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=10.86 E-value=75 Score=32.14 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=33.2
Q ss_pred ceeEEEeeecCCCCCCCCchhhhhhccCCCCcceeeeecCCcEEEee
Q 018131 308 KAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 354 (360)
Q Consensus 308 ~v~AvAVCH~DTS~Wnp~H~aF~~L~vKPG~~pVCHflp~~~ivWvp 354 (360)
+.+.+++||.+-+ -.+.. +.|++.|-++ -.-.+.-||+.|+-
T Consensus 167 ~~rviG~c~~~~~---~~~~l-~~lgv~~~~v-~~~v~GlNH~~w~~ 208 (480)
T 1obb_A 167 PIKAVGFCHGHYG---VMEIV-EKLGLEEEKV-DWQVAGVNHGIWLN 208 (480)
T ss_dssp CSEEEEECSGGGH---HHHHH-HHTTCCGGGE-EEEEEEETTEEEEE
T ss_pred CCcEEecCCCHHH---HHHHH-HHhCCCHHHc-eEEEEeecchhhhh
Confidence 4588899999986 35777 9999998764 34668889999984
No 6
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=10.64 E-value=1.1e+02 Score=25.06 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=26.2
Q ss_pred ChHHHhhhcCCCCCCHHHHHHHHHHH-HccCCCCCCc
Q 018131 185 KLPEIFNQFSVKPGSVEAEIMQNTIK-ECEDPGIKGE 220 (360)
Q Consensus 185 kl~~iL~~FsI~~~S~~A~~m~~TL~-~CE~p~~~GE 220 (360)
.|.+||+.|-|+. +.|..+..||+ .||.-|.+-|
T Consensus 31 sledilaqfeis~--~sayniqr~l~~ice~hpdece 65 (118)
T 2vqc_A 31 TLEDILAQFEISV--PSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCTTTEE
T ss_pred cHHHHHHHheecc--chHhHHHHHHHHHHhcCCchhh
Confidence 5789999999854 46888999985 5998775544
No 7
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=8.73 E-value=35 Score=21.60 Aligned_cols=6 Identities=33% Similarity=1.624 Sum_probs=3.4
Q ss_pred EEeecc
Q 018131 285 VFYCHA 290 (360)
Q Consensus 285 VfYCH~ 290 (360)
|||||.
T Consensus 12 ~YfChl 17 (26)
T 1srb_A 12 LYFCHQ 17 (26)
T ss_dssp HHHHSC
T ss_pred EEEEec
Confidence 566663
No 8
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=8.41 E-value=64 Score=24.17 Aligned_cols=14 Identities=50% Similarity=0.876 Sum_probs=12.9
Q ss_pred CCCccHHHHHhcCC
Q 018131 35 NSPMPKAVKDLLQP 48 (360)
Q Consensus 35 nTPmPkal~~LL~p 48 (360)
+||-|.||.|||+.
T Consensus 15 e~ppP~aI~DLLks 28 (60)
T 1ng7_A 15 TSPPPECINDLLQA 28 (60)
T ss_dssp CCCSSTTTHHHHHH
T ss_pred CCCCCHHHHHHHHc
Confidence 79999999999975
No 9
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=8.36 E-value=85 Score=24.95 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=8.3
Q ss_pred CCChhhhhhhc
Q 018131 22 DISPELYWKTV 32 (360)
Q Consensus 22 ~lp~e~YW~s~ 32 (360)
.-|+|.||+-+
T Consensus 15 e~pse~YWk~l 25 (83)
T 1wlq_A 15 ENPSSQYWKEV 25 (83)
T ss_dssp CCTTCTHHHHH
T ss_pred CCCcHHHHHHH
Confidence 34899999864
No 10
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=7.79 E-value=40 Score=21.32 Aligned_cols=6 Identities=33% Similarity=1.149 Sum_probs=3.4
Q ss_pred EEeecc
Q 018131 285 VFYCHA 290 (360)
Q Consensus 285 VfYCH~ 290 (360)
|||||.
T Consensus 12 ~yfChl 17 (26)
T 2lde_A 12 MNFCHK 17 (26)
T ss_dssp HHHHST
T ss_pred heeecc
Confidence 466664
Done!