Query 018132
Match_columns 360
No_of_seqs 276 out of 1494
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 100.0 3.5E-44 7.5E-49 346.6 14.3 175 33-207 97-278 (299)
2 KOG1315 Predicted DHHC-type Zn 100.0 5.4E-38 1.2E-42 305.1 12.6 165 36-202 96-265 (307)
3 PF01529 zf-DHHC: DHHC palmito 100.0 1.9E-35 4.1E-40 262.2 10.7 132 40-171 39-173 (174)
4 KOG1313 DHHC-type Zn-finger pr 100.0 5E-35 1.1E-39 276.7 7.2 162 36-198 89-279 (309)
5 COG5273 Uncharacterized protei 100.0 4.6E-31 9.9E-36 257.9 8.9 128 42-171 102-232 (309)
6 KOG1314 DHHC-type Zn-finger pr 100.0 9.5E-31 2.1E-35 254.4 4.1 149 47-195 89-263 (414)
7 KOG1312 DHHC-type Zn-finger pr 99.9 5E-27 1.1E-31 223.7 6.8 122 50-171 149-290 (341)
8 KOG0509 Ankyrin repeat and DHH 99.9 3E-25 6.6E-30 229.1 2.7 140 50-194 421-584 (600)
9 PF01529 zf-DHHC: DHHC palmito 95.7 0.14 3E-06 45.2 11.0 55 47-112 60-114 (174)
10 COG5273 Uncharacterized protei 95.6 0.053 1.1E-06 53.8 8.5 114 48-172 122-245 (309)
11 KOG1311 DHHC-type Zn-finger pr 94.0 0.16 3.4E-06 49.5 7.2 41 63-103 113-164 (299)
12 KOG0509 Ankyrin repeat and DHH 86.5 0.28 6E-06 52.5 0.9 66 47-113 323-388 (600)
13 KOG1315 Predicted DHHC-type Zn 83.9 5 0.00011 40.1 8.3 31 62-92 108-138 (307)
14 KOG1314 DHHC-type Zn-finger pr 82.2 1.5 3.2E-05 44.5 3.8 41 50-101 106-146 (414)
15 KOG1313 DHHC-type Zn-finger pr 68.0 25 0.00054 34.9 7.9 50 50-110 117-166 (309)
16 PF13240 zinc_ribbon_2: zinc-r 62.0 4.6 0.0001 25.0 1.1 21 51-71 1-21 (23)
17 PRK04136 rpl40e 50S ribosomal 57.0 6.8 0.00015 28.8 1.5 24 48-71 13-36 (48)
18 PTZ00303 phosphatidylinositol 53.5 7.3 0.00016 43.5 1.7 22 50-71 461-489 (1374)
19 PF10864 DUF2663: Protein of u 52.7 71 0.0015 28.2 7.4 18 94-111 23-40 (130)
20 PF13248 zf-ribbon_3: zinc-rib 50.6 8.7 0.00019 24.2 1.0 22 50-71 3-24 (26)
21 PRK15103 paraquat-inducible me 47.4 3E+02 0.0064 28.7 12.2 32 49-80 221-252 (419)
22 KOG1842 FYVE finger-containing 46.5 5.5 0.00012 41.6 -0.5 26 49-74 180-207 (505)
23 TIGR00155 pqiA_fam integral me 44.6 3.5E+02 0.0075 28.0 12.1 32 49-80 215-247 (403)
24 KOG1398 Uncharacterized conser 44.0 27 0.00059 36.2 3.9 24 60-89 11-34 (460)
25 PF12773 DZR: Double zinc ribb 43.7 18 0.00039 25.6 1.9 34 49-82 12-48 (50)
26 PF10571 UPF0547: Uncharacteri 40.4 18 0.00038 23.2 1.3 21 50-70 1-21 (26)
27 PHA02680 ORF090 IMV phosphoryl 36.4 1.8E+02 0.0039 24.1 6.8 23 148-170 60-82 (91)
28 PF00641 zf-RanBP: Zn-finger i 35.9 16 0.00034 23.5 0.5 21 51-71 6-26 (30)
29 PF07649 C1_3: C1-like domain; 35.7 14 0.0003 23.8 0.3 22 50-71 1-23 (30)
30 PF09889 DUF2116: Uncharacteri 35.7 30 0.00065 26.4 2.1 23 49-71 3-26 (59)
31 PF06906 DUF1272: Protein of u 34.7 22 0.00047 27.1 1.2 36 51-89 7-50 (57)
32 KOG3183 Predicted Zn-finger pr 33.9 19 0.00042 34.8 1.0 16 69-84 34-49 (250)
33 PF12773 DZR: Double zinc ribb 30.9 32 0.00068 24.4 1.5 25 46-70 26-50 (50)
34 PF01020 Ribosomal_L40e: Ribos 28.4 41 0.00088 25.2 1.7 25 48-72 16-42 (52)
35 PF08600 Rsm1: Rsm1-like; Int 28.1 30 0.00065 28.3 1.1 15 75-89 53-67 (91)
36 PF01363 FYVE: FYVE zinc finge 26.1 20 0.00043 27.1 -0.3 26 49-74 9-36 (69)
37 PF05502 Dynactin_p62: Dynacti 25.9 46 0.001 35.2 2.3 46 45-90 22-102 (483)
38 PF07062 Clc-like: Clc-like; 24.2 3.5E+02 0.0075 25.7 7.6 10 69-78 64-73 (211)
39 TIGR00155 pqiA_fam integral me 23.3 8.4E+02 0.018 25.2 11.5 31 50-80 14-50 (403)
40 KOG2927 Membrane component of 22.6 1.2E+02 0.0027 31.1 4.4 30 58-87 156-186 (372)
41 COG1552 RPL40A Ribosomal prote 22.4 16 0.00035 27.0 -1.3 24 48-71 13-36 (50)
42 PRK06231 F0F1 ATP synthase sub 22.2 2.9E+02 0.0064 25.7 6.7 26 124-149 40-65 (205)
43 PF11014 DUF2852: Protein of u 20.8 1.6E+02 0.0034 25.5 4.1 20 132-151 9-28 (115)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=3.5e-44 Score=346.63 Aligned_cols=175 Identities=42% Similarity=0.803 Sum_probs=149.4
Q ss_pred CCCCccceeecCeeeceeecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 018132 33 KLPRTKDVIINGHTVKVKYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAF 112 (360)
Q Consensus 33 ~~Prtk~v~vng~~v~~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~ 112 (360)
+.++.+++.++|+.++.|||.+|+.+||||||||++||+||+||||||||+|||||+||||||++|+++++++++|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~ 176 (299)
T KOG1311|consen 97 RAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAF 176 (299)
T ss_pred ccccCCCcccCCcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchh----hH--hhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcceeeeee-eccCCCCCCCCHHHH
Q 018132 113 SWVNILEKDHN----IW--KAMSEDVPSVILMVYCFIAVWFVGGLSVFHFYLICTNQTTYENFR-YRYDKKENPYNNGML 185 (360)
Q Consensus 113 s~~~il~~~~~----~~--~~~~~~~~~i~liv~~fl~~~fvg~L~~fHlyLI~~N~TT~E~lr-~~~~kk~NPyd~G~~ 185 (360)
+++.+...... .+ .........++++++++++++++++|+.+|+++|++|+||+|+++ ++..++.++|++|.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~~~~~~~~~~~~~g~~ 256 (299)
T KOG1311|consen 177 LFYELLQRADNLKVNLTPVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKSLDFVSRSNPYDLGLL 256 (299)
T ss_pred HHHHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhccccccccCCCchhHH
Confidence 88886643211 22 122223345566678888889999999999999999999999988 344444699999999
Q ss_pred HHHHHhcCCCCCCCccccCccc
Q 018132 186 RNLGEVFFSKIPPSMNNFRSFV 207 (360)
Q Consensus 186 ~Nl~eVFg~~~pps~~~fr~~v 207 (360)
+|++++||.+.++++.......
T Consensus 257 ~n~~~~~~~~~~~~~~~p~~~~ 278 (299)
T KOG1311|consen 257 KNLQEVFGGPLPLSWLSPFARS 278 (299)
T ss_pred HHHHHHhCCCCCcccccccccC
Confidence 9999999999998877766543
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=5.4e-38 Score=305.14 Aligned_cols=165 Identities=32% Similarity=0.590 Sum_probs=125.4
Q ss_pred CccceeecCeeeceeecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018132 36 RTKDVIINGHTVKVKYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAFSWV 115 (360)
Q Consensus 36 rtk~v~vng~~v~~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~s~~ 115 (360)
+.+.....+...++|||.+|+.+||+|||||++|++||+||||||||+|||||.+|||||++|++|+++.++|.++..+.
T Consensus 96 ~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~ 175 (307)
T KOG1315|consen 96 RDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLI 175 (307)
T ss_pred ccceeeEecCCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667888899999999999999999999999999999999999999999999999999999999999998877766
Q ss_pred HHhhcchhhHhhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcceeeeeeec----cCCCCCCCCHHHHHHHHH
Q 018132 116 NILEKDHNIWKAMS-EDVPSVILMVYCFIAVWFVGGLSVFHFYLICTNQTTYENFRYR----YDKKENPYNNGMLRNLGE 190 (360)
Q Consensus 116 ~il~~~~~~~~~~~-~~~~~i~liv~~fl~~~fvg~L~~fHlyLI~~N~TT~E~lr~~----~~kk~NPyd~G~~~Nl~e 190 (360)
.+.......+.... .....+++++..+.+++.+++|+++|+|||++|+||+|.++.. +....+.|+. ..|+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~~~~~~~~~~~--~~n~~~ 253 (307)
T KOG1315|consen 176 GFTKYFQGGAGPSSLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFRSGLHNKNGFNL--YVNFRE 253 (307)
T ss_pred HHHHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhccccccccccccCCcce--eecHHH
Confidence 55432211110000 0111233344444455667779999999999999999998753 2234567776 889999
Q ss_pred hcCCCCCCCccc
Q 018132 191 VFFSKIPPSMNN 202 (360)
Q Consensus 191 VFg~~~pps~~~ 202 (360)
+||++.--|+.+
T Consensus 254 vfg~~~~~wl~P 265 (307)
T KOG1315|consen 254 VFGSNLLYWLLP 265 (307)
T ss_pred HhCCCceEEecc
Confidence 999975555443
No 3
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=1.9e-35 Score=262.20 Aligned_cols=132 Identities=39% Similarity=0.853 Sum_probs=105.8
Q ss_pred eeecCeeeceeecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018132 40 VIINGHTVKVKYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAFSWVNILE 119 (360)
Q Consensus 40 v~vng~~v~~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~s~~~il~ 119 (360)
....+.....+||.+|+++||+|+|||+.|++||.||||||+|+|||||++|||+|++|+++.++++++.++.++..+..
T Consensus 39 ~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~ 118 (174)
T PF01529_consen 39 SPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVR 118 (174)
T ss_pred hhccccCCCCEECcccCCcCCCcceeccccccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777889999999999999999999999999999999999999999999999999999999999988877766544
Q ss_pred cchhh--Hh-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcceeeeeee
Q 018132 120 KDHNI--WK-AMSEDVPSVILMVYCFIAVWFVGGLSVFHFYLICTNQTTYENFRY 171 (360)
Q Consensus 120 ~~~~~--~~-~~~~~~~~i~liv~~fl~~~fvg~L~~fHlyLI~~N~TT~E~lr~ 171 (360)
..... .. ........+++++++++++++++.|+++|+++|++|+||+|.+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 119 YIPSISFSSFWIFSNFSSIFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred HhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 32111 00 000011124556666777788999999999999999999998864
No 4
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=5e-35 Score=276.73 Aligned_cols=162 Identities=28% Similarity=0.505 Sum_probs=123.4
Q ss_pred CccceeecCeeeceeecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018132 36 RTKDVIINGHTVKVKYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAFSWV 115 (360)
Q Consensus 36 rtk~v~vng~~v~~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~s~~ 115 (360)
+++....|+......+|.+|.-+||||+||||+|++||++|||||||+|||||..||||||+|++|+++.+.|+++++.+
T Consensus 89 ~t~pPvgn~~~~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~ 168 (309)
T KOG1313|consen 89 RTKPPVGNPGLENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVY 168 (309)
T ss_pred cccCCcCCCCCccccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777778899999999999999999999999999999999999999999999999999999999998766443
Q ss_pred HH---hhcchh----------hHh---------hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcceeeeeeecc
Q 018132 116 NI---LEKDHN----------IWK---------AMSEDVPSVILMVYCFIAVWFVGGLSVFHFYLICTNQTTYENFRYRY 173 (360)
Q Consensus 116 ~i---l~~~~~----------~~~---------~~~~~~~~i~liv~~fl~~~fvg~L~~fHlyLI~~N~TT~E~lr~~~ 173 (360)
.. +..... .+. .+.. .....++++++.+++.+++|+.+|.++|++|.|.+|++.+.+
T Consensus 169 ~w~~~le~~~~~tay~~d~~h~~Pp~~i~r~~~~i~~-t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~ 247 (309)
T KOG1313|consen 169 TWIDHLEPIEEITAYASDVAHVAPPPSILRVYKNITR-TSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIK 247 (309)
T ss_pred HHHHhcchHhhcccccCcccccCCChhhhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHH
Confidence 22 211100 000 0000 112234455555667889999999999999999999875432
Q ss_pred -------CCCCCCCCHHHHHHHHHhcCCCCCC
Q 018132 174 -------DKKENPYNNGMLRNLGEVFFSKIPP 198 (360)
Q Consensus 174 -------~kk~NPyd~G~~~Nl~eVFg~~~pp 198 (360)
.+..||++.|..+||+.++|-..-+
T Consensus 248 e~k~~~a~~R~~~~n~g~k~nWr~fLg~~~~r 279 (309)
T KOG1313|consen 248 ERKRYLAHLRSNPTNFGGKANWRNFLGLFRGR 279 (309)
T ss_pred HhHhHHHhccCCCcccchHHHHHHhhccccCC
Confidence 2336999999999999999876555
No 5
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=99.97 E-value=4.6e-31 Score=257.87 Aligned_cols=128 Identities=36% Similarity=0.703 Sum_probs=97.3
Q ss_pred ecCeeeceeecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018132 42 INGHTVKVKYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAFSWVNILEKD 121 (360)
Q Consensus 42 vng~~v~~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~s~~~il~~~ 121 (360)
..+.....+||.+|+.+||+|||||+.||+||+||||||||+|||||++|||+|++||++....++++++..++++....
T Consensus 102 ~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~ 181 (309)
T COG5273 102 DDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIF 181 (309)
T ss_pred hcCccccceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667788999999999999999999999999999999999999999999999999999998888888777766654321
Q ss_pred h--h-hHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcceeeeeee
Q 018132 122 H--N-IWKAMSEDVPSVILMVYCFIAVWFVGGLSVFHFYLICTNQTTYENFRY 171 (360)
Q Consensus 122 ~--~-~~~~~~~~~~~i~liv~~fl~~~fvg~L~~fHlyLI~~N~TT~E~lr~ 171 (360)
. . ...+.. ........+....++++..++++|.+++..|+||+|.+..
T Consensus 182 ~~~~~~~~~~~--~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~ 232 (309)
T COG5273 182 SIRHDTSLAIC--FLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQI 232 (309)
T ss_pred cccCChHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 1 0 000000 0000011233334556778899999999999999997653
No 6
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=99.96 E-value=9.5e-31 Score=254.44 Aligned_cols=149 Identities=30% Similarity=0.617 Sum_probs=103.9
Q ss_pred eceeecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHH---HHHHHHH-Hhhc--
Q 018132 47 VKVKYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYV---FAFSWVN-ILEK-- 120 (360)
Q Consensus 47 v~~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~---~~~s~~~-il~~-- 120 (360)
....||..|+-||+||||||+.|||||.+|||||||+|||||..||.||+.||++..+.|+-. ++.+.+. +...
T Consensus 89 ~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~ 168 (414)
T KOG1314|consen 89 MFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWY 168 (414)
T ss_pred HHHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999998866542 2222111 1100
Q ss_pred ----chh---hHhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcceeeeee---------eccCC----CCCCC
Q 018132 121 ----DHN---IWKAMSEDVPSVILMVYCFIAVWFVGGLSVFHFYLICTNQTTYENFR---------YRYDK----KENPY 180 (360)
Q Consensus 121 ----~~~---~~~~~~~~~~~i~liv~~fl~~~fvg~L~~fHlyLI~~N~TT~E~lr---------~~~~k----k~NPy 180 (360)
... +....+..+..++.+-+.+..++.++.|++.|+..|.+|+|.+|.+- +...+ -..||
T Consensus 169 ~~~g~~hlp~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypy 248 (414)
T KOG1314|consen 169 IKYGLRHLPIVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPY 248 (414)
T ss_pred hhcccccCceeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeec
Confidence 000 00000011111222222333445677889999999999999999763 11111 13799
Q ss_pred CHHHHHHHHHhcCCC
Q 018132 181 NNGMLRNLGEVFFSK 195 (360)
Q Consensus 181 d~G~~~Nl~eVFg~~ 195 (360)
|.|+..|+++||+..
T Consensus 249 dlgWr~n~r~vf~~~ 263 (414)
T KOG1314|consen 249 DLGWRINLREVFFQN 263 (414)
T ss_pred cccccccHHHHhhhc
Confidence 999888999999864
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.93 E-value=5e-27 Score=223.69 Aligned_cols=122 Identities=39% Similarity=0.753 Sum_probs=88.6
Q ss_pred eecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh------
Q 018132 50 KYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAFSWVNILEKDHN------ 123 (360)
Q Consensus 50 KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~s~~~il~~~~~------ 123 (360)
+-|.||++.||.|++|||+||+||.||||||.|+|||||.+|+|||++||++...++.|.+.-.++..+.....
T Consensus 149 ~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~sdl~q~v~ 228 (341)
T KOG1312|consen 149 VKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMSDLYQEVY 228 (341)
T ss_pred CccccccCCCccccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhccccchhee
Confidence 68999999999999999999999999999999999999999999999999999888888766555442211100
Q ss_pred ----hHhhhccChhH---HH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcceeeeeee
Q 018132 124 ----IWKAMSEDVPS---VI------LMVYCFIA-VWFVGGLSVFHFYLICTNQTTYENFRY 171 (360)
Q Consensus 124 ----~~~~~~~~~~~---i~------liv~~fl~-~~fvg~L~~fHlyLI~~N~TT~E~lr~ 171 (360)
.|......... ++ .++.++.. ..++++-..+-+|+-++|+||.|+++.
T Consensus 229 ilt~~~g~~ks~~~L~~yl~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~ 290 (341)
T KOG1312|consen 229 ILTLGHGHVKSTVFLIQYLFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRG 290 (341)
T ss_pred eeeeeecchhhHHHHHHHHHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhcc
Confidence 11111111000 00 11122222 235677788889999999999998864
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.90 E-value=3e-25 Score=229.07 Aligned_cols=140 Identities=31% Similarity=0.770 Sum_probs=100.7
Q ss_pred eecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hhHhh
Q 018132 50 KYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAFSWVNILEKDH--NIWKA 127 (360)
Q Consensus 50 KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~s~~~il~~~~--~~~~~ 127 (360)
+||.+|.+.||.|++||++|||||.||||||||++||||.+|||+|+.|+++....+.++++.+.+++..... ..|..
T Consensus 421 ~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~~~~~~ 500 (600)
T KOG0509|consen 421 RFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENASTIYVG 500 (600)
T ss_pred cceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999988888777776666543321 11111
Q ss_pred hccChhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhCcceeeeeeeccC--------CCCCCCCHHHH
Q 018132 128 MSEDVPSVILMVYCF--------------IAVWFVGGLSVFHFYLICTNQTTYENFRYRYD--------KKENPYNNGML 185 (360)
Q Consensus 128 ~~~~~~~i~liv~~f--------------l~~~fvg~L~~fHlyLI~~N~TT~E~lr~~~~--------kk~NPyd~G~~ 185 (360)
.. ..+..+.. ...|..+...+-|...+|.+.||+|.++.... ...+|++.|+.
T Consensus 501 ~l-----~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~~~~~~~~~~~~s~g~~ 575 (600)
T KOG0509|consen 501 FL-----IAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHLGIKRGPTRSPFSPGPI 575 (600)
T ss_pred HH-----HHHHHHhCCccceeeeeeccccccccccccccccccceeeecccHHHHHHHHHhhccccccCcCCCCCCchhh
Confidence 10 00000000 01122222334455678999999998864321 12689999999
Q ss_pred HHHHHhcCC
Q 018132 186 RNLGEVFFS 194 (360)
Q Consensus 186 ~Nl~eVFg~ 194 (360)
+|+.++|-.
T Consensus 576 ~Nl~df~~~ 584 (600)
T KOG0509|consen 576 RNLVDFFLC 584 (600)
T ss_pred hcchheeec
Confidence 999998743
No 9
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=95.72 E-value=0.14 Score=45.21 Aligned_cols=55 Identities=18% Similarity=0.451 Sum_probs=41.2
Q ss_pred eceeecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 018132 47 VKVKYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAF 112 (360)
Q Consensus 47 v~~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~ 112 (360)
.+.++|..|+.-...+-|||..-++||-+--| +-+-.|+++.....+..++....
T Consensus 60 ~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~~ 114 (174)
T PF01529_consen 60 PRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILSLY 114 (174)
T ss_pred CcceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999987765 45667777766665555554333
No 10
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=95.59 E-value=0.053 Score=53.80 Aligned_cols=114 Identities=18% Similarity=0.296 Sum_probs=67.5
Q ss_pred ceeecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH---hhcchh-
Q 018132 48 KVKYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAFSWVNI---LEKDHN- 123 (360)
Q Consensus 48 ~~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~s~~~i---l~~~~~- 123 (360)
+.++|.+|+.--...=|||.-=+|||-+--| |=.=.|++++.+.++..++.....+..+ -.....
T Consensus 122 RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (309)
T COG5273 122 RSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLA 190 (309)
T ss_pred CCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 3579999999999999999999999987664 5566788887666555444333322211 111111
Q ss_pred ----hHh--hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcceeeeeeec
Q 018132 124 ----IWK--AMSEDVPSVILMVYCFIAVWFVGGLSVFHFYLICTNQTTYENFRYR 172 (360)
Q Consensus 124 ----~~~--~~~~~~~~i~liv~~fl~~~fvg~L~~fHlyLI~~N~TT~E~lr~~ 172 (360)
++. .+....+.+..+++.+.....+..++.+..+.+.++.++-|.....
T Consensus 191 ~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~ 245 (309)
T COG5273 191 ICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLC 245 (309)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchh
Confidence 111 1111111111222222233345567778888999999998876543
No 11
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=94.05 E-value=0.16 Score=49.49 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=36.1
Q ss_pred CcCCCCCCcccccCCccCcccccccccch-----------hHHHHHHHHHHH
Q 018132 63 ASHCSICNNCVQRFDHHCPWVGQCIGIRN-----------YRFFYMFILTST 103 (360)
Q Consensus 63 s~HCsvC~rCV~rfDHHCpWvgnCIG~rN-----------yR~F~lFL~~~t 103 (360)
-++|..|+..+...-|||..-|+||-++- +|-+-.|+++..
T Consensus 113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 79999999999999999999999998884 477888986555
No 12
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=86.50 E-value=0.28 Score=52.54 Aligned_cols=66 Identities=14% Similarity=-0.017 Sum_probs=52.1
Q ss_pred eceeecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 018132 47 VKVKYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVFAFS 113 (360)
Q Consensus 47 v~~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~~~s 113 (360)
+-.-+|.+|.+..+.+..+|..|-.|+..|++||+|+. ||+.+|-..|.++.+...+..++.++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~~~~f~~~ 388 (600)
T KOG0509|consen 323 VLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAYFITFGLF 388 (600)
T ss_pred hhheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999 9999999866554444444444444433
No 13
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=83.89 E-value=5 Score=40.05 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=24.3
Q ss_pred CCcCCCCCCcccccCCccCcccccccccchh
Q 018132 62 RASHCSICNNCVQRFDHHCPWVGQCIGIRNY 92 (360)
Q Consensus 62 Rs~HCsvC~rCV~rfDHHCpWvgnCIG~rNy 92 (360)
+.+.|..|+.=..-.-|||.--+.||.+.-|
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDH 138 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDH 138 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhcccc
Confidence 5567888887778888888888888888744
No 14
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=82.19 E-value=1.5 Score=44.51 Aligned_cols=41 Identities=27% Similarity=0.531 Sum_probs=33.6
Q ss_pred eecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHH
Q 018132 50 KYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILT 101 (360)
Q Consensus 50 KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~ 101 (360)
..|.+|+.---.--|||.--++||--.-|- -.-+|++|...
T Consensus 106 HHCrkCnrCvmkMDHHCPWinnCVG~aNh~-----------~F~~FLlf~iv 146 (414)
T KOG1314|consen 106 HHCRKCNRCVMKMDHHCPWINNCVGWANHA-----------YFLRFLLFSIV 146 (414)
T ss_pred ccchHHHHHHHhhccCCcchhhcccccccH-----------HHHHHHHHHHH
Confidence 589999988888899999999999865553 35688888776
No 15
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=68.00 E-value=25 Score=34.86 Aligned_cols=50 Identities=24% Similarity=0.514 Sum_probs=39.2
Q ss_pred eecCCCCcccCCCCcCCCCCCcccccCCccCcccccccccchhHHHHHHHHHHHHHHHHHH
Q 018132 50 KYCDTCMLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFYMFILTSTILCVYVF 110 (360)
Q Consensus 50 KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHCpWvgnCIG~rNyR~F~lFL~~~tll~iy~~ 110 (360)
..|.+|+.---.--|||.-=|+||--..| |=.-.|+.++..++.++.++-
T Consensus 117 HHCsiC~kCVL~MDHHCPwinnCVG~~NH-----------ryFFlFl~~ltlat~~~~i~~ 166 (309)
T KOG1313|consen 117 HHCSICNKCVLKMDHHCPWINNCVGAHNH-----------RYFFLFLFYLTLATSYAAIMC 166 (309)
T ss_pred chhhHHhhHhhccccCCchhhcccccccc-----------hhHHHHHHHHHHHHHHHHHHH
Confidence 47899988877888999999999998877 445678888877766665553
No 16
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=62.02 E-value=4.6 Score=25.00 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=18.1
Q ss_pred ecCCCCcccCCCCcCCCCCCc
Q 018132 51 YCDTCMLYRPPRASHCSICNN 71 (360)
Q Consensus 51 yC~tC~i~RPpRs~HCsvC~r 71 (360)
||+.|...-++-+..|..|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 689999998999999988874
No 17
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=56.97 E-value=6.8 Score=28.80 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.7
Q ss_pred ceeecCCCCcccCCCCcCCCCCCc
Q 018132 48 KVKYCDTCMLYRPPRASHCSICNN 71 (360)
Q Consensus 48 ~~KyC~tC~i~RPpRs~HCsvC~r 71 (360)
..+.|..|...-|+|+..|+.|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 457899999999999999998875
No 18
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=53.45 E-value=7.3 Score=43.49 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=18.2
Q ss_pred eecCCCCcccC-------CCCcCCCCCCc
Q 018132 50 KYCDTCMLYRP-------PRASHCSICNN 71 (360)
Q Consensus 50 KyC~tC~i~RP-------pRs~HCsvC~r 71 (360)
+.|..|+..-. -|-|||+.|++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 56999988775 39999998877
No 19
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=52.65 E-value=71 Score=28.19 Aligned_cols=18 Identities=11% Similarity=0.670 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018132 94 FFYMFILTSTILCVYVFA 111 (360)
Q Consensus 94 ~F~lFL~~~tll~iy~~~ 111 (360)
++.+++++.+++++|+..
T Consensus 23 ~~~~~l~~~~~~~~y~~~ 40 (130)
T PF10864_consen 23 WQWLFLFSLFLFFIYFYI 40 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666555443
No 20
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=50.55 E-value=8.7 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=18.1
Q ss_pred eecCCCCcccCCCCcCCCCCCc
Q 018132 50 KYCDTCMLYRPPRASHCSICNN 71 (360)
Q Consensus 50 KyC~tC~i~RPpRs~HCsvC~r 71 (360)
++|+.|...-++-...|..|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 5789998877888888888874
No 21
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=47.41 E-value=3e+02 Score=28.68 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=24.3
Q ss_pred eeecCCCCcccCCCCcCCCCCCcccccCCccC
Q 018132 49 VKYCDTCMLYRPPRASHCSICNNCVQRFDHHC 80 (360)
Q Consensus 49 ~KyC~tC~i~RPpRs~HCsvC~rCV~rfDHHC 80 (360)
..-|+.|...-|....||..|+.-..+..++.
T Consensus 221 l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~s 252 (419)
T PRK15103 221 LRSCSCCTAILPADQPVCPRCHTKGYVRRRNS 252 (419)
T ss_pred CCcCCCCCCCCCCCCCCCCCCCCcCcCCCCCC
Confidence 45699999987777778888888776655544
No 22
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=46.54 E-value=5.5 Score=41.62 Aligned_cols=26 Identities=27% Similarity=0.743 Sum_probs=19.5
Q ss_pred eeecCCCCccc--CCCCcCCCCCCcccc
Q 018132 49 VKYCDTCMLYR--PPRASHCSICNNCVQ 74 (360)
Q Consensus 49 ~KyC~tC~i~R--PpRs~HCsvC~rCV~ 74 (360)
+++|+.|.-.= --|-|||+.||+-+-
T Consensus 180 V~~CP~Ca~~F~l~rRrHHCRLCG~VmC 207 (505)
T KOG1842|consen 180 VQFCPECANSFGLTRRRHHCRLCGRVMC 207 (505)
T ss_pred ccccccccchhhhHHHhhhhhhcchHHH
Confidence 47999996543 347899999998543
No 23
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=44.60 E-value=3.5e+02 Score=28.01 Aligned_cols=32 Identities=16% Similarity=0.467 Sum_probs=22.2
Q ss_pred eeecCCCCc-ccCCCCcCCCCCCcccccCCccC
Q 018132 49 VKYCDTCML-YRPPRASHCSICNNCVQRFDHHC 80 (360)
Q Consensus 49 ~KyC~tC~i-~RPpRs~HCsvC~rCV~rfDHHC 80 (360)
..-|+.|.. ..+....+|..|+.-..+..++.
T Consensus 215 ~~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~s 247 (403)
T TIGR00155 215 LRSCSACHTTILPAQEPVCPRCSTPLYVRRRNS 247 (403)
T ss_pred CCcCCCCCCccCCCCCcCCcCCCCcccCCCCCC
Confidence 456999998 45555667888887776665544
No 24
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.02 E-value=27 Score=36.18 Aligned_cols=24 Identities=42% Similarity=0.929 Sum_probs=18.6
Q ss_pred CCCCcCCCCCCcccccCCccCccccccccc
Q 018132 60 PPRASHCSICNNCVQRFDHHCPWVGQCIGI 89 (360)
Q Consensus 60 PpRs~HCsvC~rCV~rfDHHCpWvgnCIG~ 89 (360)
-.|..||..|+. +|| +|+.||||.
T Consensus 11 l~~p~l~~tC~e----~~h--~w~~~c~ga 34 (460)
T KOG1398|consen 11 LARPSLAETCDE----ADH--SWVANCIGA 34 (460)
T ss_pred hcCchHhhhhhh----ccC--CcccchhHH
Confidence 456678888864 677 799999996
No 25
>PF12773 DZR: Double zinc ribbon
Probab=43.75 E-value=18 Score=25.65 Aligned_cols=34 Identities=24% Similarity=0.506 Sum_probs=22.7
Q ss_pred eeecCCCCcccC--C-CCcCCCCCCcccccCCccCcc
Q 018132 49 VKYCDTCMLYRP--P-RASHCSICNNCVQRFDHHCPW 82 (360)
Q Consensus 49 ~KyC~tC~i~RP--p-Rs~HCsvC~rCV~rfDHHCpW 82 (360)
.+||..|...-+ . ....|..|+.=+...+.+|++
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 467777777666 2 356677777777767777664
No 26
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=40.38 E-value=18 Score=23.17 Aligned_cols=21 Identities=33% Similarity=0.714 Sum_probs=17.3
Q ss_pred eecCCCCcccCCCCcCCCCCC
Q 018132 50 KYCDTCMLYRPPRASHCSICN 70 (360)
Q Consensus 50 KyC~tC~i~RPpRs~HCsvC~ 70 (360)
|.|+.|...-|.-+.-|..|+
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG 21 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCG 21 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCC
Confidence 568889888888888888776
No 27
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=36.35 E-value=1.8e+02 Score=24.12 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCcceeeeee
Q 018132 148 VGGLSVFHFYLICTNQTTYENFR 170 (360)
Q Consensus 148 vg~L~~fHlyLI~~N~TT~E~lr 170 (360)
+.++++|..|--|++.+++|.++
T Consensus 60 ~lGilifs~y~~C~~~~~~~r~n 82 (91)
T PHA02680 60 LLGLFVFSMYRKCSGSMPYERLN 82 (91)
T ss_pred HHHHHHHHHhcccCCCceeeccc
Confidence 44578888888888888887664
No 28
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=35.93 E-value=16 Score=23.54 Aligned_cols=21 Identities=29% Similarity=0.863 Sum_probs=15.5
Q ss_pred ecCCCCcccCCCCcCCCCCCc
Q 018132 51 YCDTCMLYRPPRASHCSICNN 71 (360)
Q Consensus 51 yC~tC~i~RPpRs~HCsvC~r 71 (360)
.|..|...-+++..+|..|+.
T Consensus 6 ~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 6 KCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EETTTTEEEESSSSB-TTT--
T ss_pred cCCCCcCCchHHhhhhhCcCC
Confidence 488898888888888888864
No 29
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=35.74 E-value=14 Score=23.81 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=9.4
Q ss_pred eecCCCCcccCC-CCcCCCCCCc
Q 018132 50 KYCDTCMLYRPP-RASHCSICNN 71 (360)
Q Consensus 50 KyC~tC~i~RPp-Rs~HCsvC~r 71 (360)
+.|..|+..... ..++|..|+-
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf 23 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDF 23 (30)
T ss_dssp ---TTTS----S--EEE-TTT--
T ss_pred CcCCcCCCcCCCCceEECccCCC
Confidence 468888888777 7888988874
No 30
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=35.68 E-value=30 Score=26.44 Aligned_cols=23 Identities=39% Similarity=0.746 Sum_probs=14.7
Q ss_pred eeecCCCCcccCCCCcCCC-CCCc
Q 018132 49 VKYCDTCMLYRPPRASHCS-ICNN 71 (360)
Q Consensus 49 ~KyC~tC~i~RPpRs~HCs-vC~r 71 (360)
.|.|..|...-|+--..|| .|..
T Consensus 3 HkHC~~CG~~Ip~~~~fCS~~C~~ 26 (59)
T PF09889_consen 3 HKHCPVCGKPIPPDESFCSPKCRE 26 (59)
T ss_pred CCcCCcCCCcCCcchhhhCHHHHH
Confidence 3567777777777666665 4443
No 31
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=34.69 E-value=22 Score=27.07 Aligned_cols=36 Identities=31% Similarity=0.915 Sum_probs=27.2
Q ss_pred ecCCCCcccCCCC-------cCCCCCCcccccC-CccCccccccccc
Q 018132 51 YCDTCMLYRPPRA-------SHCSICNNCVQRF-DHHCPWVGQCIGI 89 (360)
Q Consensus 51 yC~tC~i~RPpRs-------~HCsvC~rCV~rf-DHHCpWvgnCIG~ 89 (360)
-|..|..--|+-+ +-|-.|..|+..+ .++|| ||=|.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 3666766666654 6788999999988 99998 66654
No 32
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=33.86 E-value=19 Score=34.79 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=12.0
Q ss_pred CCcccccCCccCcccc
Q 018132 69 CNNCVQRFDHHCPWVG 84 (360)
Q Consensus 69 C~rCV~rfDHHCpWvg 84 (360)
|-.-..+.+|||||..
T Consensus 34 C~eHrsye~H~Cp~~~ 49 (250)
T KOG3183|consen 34 CLEHRSYESHHCPKGL 49 (250)
T ss_pred hhccchHhhcCCCccc
Confidence 3445678999999975
No 33
>PF12773 DZR: Double zinc ribbon
Probab=30.86 E-value=32 Score=24.36 Aligned_cols=25 Identities=32% Similarity=0.720 Sum_probs=21.3
Q ss_pred eeceeecCCCCcccCCCCcCCCCCC
Q 018132 46 TVKVKYCDTCMLYRPPRASHCSICN 70 (360)
Q Consensus 46 ~v~~KyC~tC~i~RPpRs~HCsvC~ 70 (360)
....++|..|....++.+..|..|+
T Consensus 26 ~~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 26 DQSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred cCCCCCCcCCcCCCcCCcCccCccc
Confidence 3446799999999999999999886
No 34
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=28.35 E-value=41 Score=25.20 Aligned_cols=25 Identities=32% Similarity=0.820 Sum_probs=16.6
Q ss_pred ceeecCCCCcccCCCCcCCCC--CCcc
Q 018132 48 KVKYCDTCMLYRPPRASHCSI--CNNC 72 (360)
Q Consensus 48 ~~KyC~tC~i~RPpRs~HCsv--C~rC 72 (360)
..+.|..|...-|||+-.|+. |+.+
T Consensus 16 ~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 16 DKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp S-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred cceecccccCcCCCCccceecccCCCC
Confidence 356899999999999999998 8764
No 35
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=28.12 E-value=30 Score=28.26 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=10.5
Q ss_pred cCCccCccccccccc
Q 018132 75 RFDHHCPWVGQCIGI 89 (360)
Q Consensus 75 rfDHHCpWvgnCIG~ 89 (360)
.+-.||||++.-...
T Consensus 53 eHr~~CPwv~~~~q~ 67 (91)
T PF08600_consen 53 EHREYCPWVNPSTQS 67 (91)
T ss_pred cccccCCccCCcccc
Confidence 344789999976643
No 36
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.08 E-value=20 Score=27.06 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=12.4
Q ss_pred eeecCCCCccc--CCCCcCCCCCCcccc
Q 018132 49 VKYCDTCMLYR--PPRASHCSICNNCVQ 74 (360)
Q Consensus 49 ~KyC~tC~i~R--PpRs~HCsvC~rCV~ 74 (360)
.+.|..|...= --|-|||+.|+.-|=
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVC 36 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEEC
Confidence 35688885433 358899999998653
No 37
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=25.88 E-value=46 Score=35.21 Aligned_cols=46 Identities=33% Similarity=0.806 Sum_probs=33.8
Q ss_pred eeeceeecCCCCcccCC--------CCc-CCCCCCcccc-----cCCc---------------------cCccccccccc
Q 018132 45 HTVKVKYCDTCMLYRPP--------RAS-HCSICNNCVQ-----RFDH---------------------HCPWVGQCIGI 89 (360)
Q Consensus 45 ~~v~~KyC~tC~i~RPp--------Rs~-HCsvC~rCV~-----rfDH---------------------HCpWvgnCIG~ 89 (360)
+++..+||+.|...-|. ||. +|-.|-.|.. .-|+ ||.|...-||.
T Consensus 22 ~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~C~~C~Wss~~igi 101 (483)
T PF05502_consen 22 EEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVRASDTPPSPPDPSSDSGGKPYYLSCSYCRWSSRDIGI 101 (483)
T ss_pred cccceeECccccccCChhhheeccceeccccccCCCCCCcceeEecccccccccccccCCCCCEEEECCCceeeccccCc
Confidence 45667999999877763 775 7777777742 2343 88998888887
Q ss_pred c
Q 018132 90 R 90 (360)
Q Consensus 90 r 90 (360)
.
T Consensus 102 ~ 102 (483)
T PF05502_consen 102 K 102 (483)
T ss_pred c
Confidence 5
No 38
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=24.21 E-value=3.5e+02 Score=25.70 Aligned_cols=10 Identities=30% Similarity=0.570 Sum_probs=7.8
Q ss_pred CCcccccCCc
Q 018132 69 CNNCVQRFDH 78 (360)
Q Consensus 69 C~rCV~rfDH 78 (360)
=.+|+.|||+
T Consensus 64 ~~~C~ykFd~ 73 (211)
T PF07062_consen 64 PLHCTYKFDY 73 (211)
T ss_pred CceEEEEcCc
Confidence 3678999995
No 39
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=23.29 E-value=8.4e+02 Score=25.20 Aligned_cols=31 Identities=16% Similarity=0.408 Sum_probs=18.6
Q ss_pred eecCCCCccc--CC----CCcCCCCCCcccccCCccC
Q 018132 50 KYCDTCMLYR--PP----RASHCSICNNCVQRFDHHC 80 (360)
Q Consensus 50 KyC~tC~i~R--Pp----Rs~HCsvC~rCV~rfDHHC 80 (360)
.-|+.|...- |+ ..-+|..|+.-..+..++.
T Consensus 14 ~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~~ 50 (403)
T TIGR00155 14 ILCSQCDMLVALPRIESGQKAACPRCGTTLTVGWDWS 50 (403)
T ss_pred eeCCCCCCcccccCCCCCCeeECCCCCCCCcCCCCCC
Confidence 3588887432 22 2345888877776666544
No 40
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.64 E-value=1.2e+02 Score=31.06 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=18.5
Q ss_pred ccCCCCcCCCCCCccc-ccCCccCccccccc
Q 018132 58 YRPPRASHCSICNNCV-QRFDHHCPWVGQCI 87 (360)
Q Consensus 58 ~RPpRs~HCsvC~rCV-~rfDHHCpWvgnCI 87 (360)
.++-+..||-+=.+=+ ..-|-|-.|+-+=+
T Consensus 156 ~kkkk~~~l~i~~dQ~F~d~de~YVW~yep~ 186 (372)
T KOG2927|consen 156 KKKKKKFELEIHDDQAFQDGDEHYVWIYEPR 186 (372)
T ss_pred hcccCccceeeccchhhcccCceEEEeccCC
Confidence 3456667776554433 33488899987643
No 41
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=22.41 E-value=16 Score=27.02 Aligned_cols=24 Identities=38% Similarity=0.906 Sum_probs=20.9
Q ss_pred ceeecCCCCcccCCCCcCCCCCCc
Q 018132 48 KVKYCDTCMLYRPPRASHCSICNN 71 (360)
Q Consensus 48 ~~KyC~tC~i~RPpRs~HCsvC~r 71 (360)
..+.|..|...-|+|+-.|+.|+.
T Consensus 13 ~kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 13 NKKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred hHHHHHHhcCCCCcchhHHhhccC
Confidence 457899999999999999998864
No 42
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.17 E-value=2.9e+02 Score=25.71 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=12.0
Q ss_pred hHhhhccChhHHHHHHHHHHHHHHHH
Q 018132 124 IWKAMSEDVPSVILMVYCFIAVWFVG 149 (360)
Q Consensus 124 ~~~~~~~~~~~i~liv~~fl~~~fvg 149 (360)
++..+...+..++.-+..|+.++++.
T Consensus 40 ~~~~~~~~~~~~i~qlInFlIlv~lL 65 (205)
T PRK06231 40 IINELFPNFWVFIAHLIAFSILLLLG 65 (205)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 45555554444444444444444333
No 43
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=20.77 E-value=1.6e+02 Score=25.55 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 018132 132 VPSVILMVYCFIAVWFVGGL 151 (360)
Q Consensus 132 ~~~i~liv~~fl~~~fvg~L 151 (360)
+..+.+||++|+++|-+|..
T Consensus 9 ~a~Ia~mVlGFi~fWPlGla 28 (115)
T PF11014_consen 9 PAWIAAMVLGFIVFWPLGLA 28 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45678889999998877754
Done!