Query 018132
Match_columns 360
No_of_seqs 276 out of 1494
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 10:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 57.1 3.5 0.00012 35.6 1.3 47 42-88 76-126 (143)
2 2ayj_A 50S ribosomal protein L 48.6 9.4 0.00032 27.9 2.1 29 47-75 17-45 (56)
3 3j21_g 50S ribosomal protein L 43.3 14 0.00049 26.3 2.4 27 48-74 13-39 (51)
4 1wfk_A Zinc finger, FYVE domai 42.5 9.4 0.00032 29.8 1.5 26 48-73 8-35 (88)
5 1dvp_A HRS, hepatocyte growth 40.9 10 0.00035 34.0 1.7 25 50-74 162-188 (220)
6 1vfy_A Phosphatidylinositol-3- 39.3 11 0.00039 28.1 1.5 23 51-73 13-37 (73)
7 3t7l_A Zinc finger FYVE domain 38.8 21 0.0007 27.9 2.9 24 50-73 21-46 (90)
8 1joc_A EEA1, early endosomal a 38.4 13 0.00046 30.8 1.9 24 50-73 70-95 (125)
9 1x4u_A Zinc finger, FYVE domai 36.5 14 0.00048 28.3 1.6 24 50-73 15-40 (84)
10 1z2q_A LM5-1; membrane protein 35.4 17 0.00057 27.9 1.9 24 50-73 22-47 (84)
11 3zyq_A Hepatocyte growth facto 34.7 14 0.00047 33.6 1.5 25 50-74 165-191 (226)
12 2yw8_A RUN and FYVE domain-con 33.0 17 0.0006 27.7 1.6 24 50-73 20-45 (82)
13 2cr8_A MDM4 protein; ZF-ranbp 25.1 30 0.001 24.8 1.6 20 51-70 13-32 (53)
14 2pg3_A Queuosine biosynthesis 24.1 17 0.00059 32.1 0.2 18 59-76 191-208 (232)
15 3u5e_m 60S ribosomal protein L 23.6 39 0.0013 27.5 2.3 24 49-72 93-118 (128)
16 1y02_A CARP2, FYVE-ring finger 23.4 28 0.00096 28.9 1.3 24 50-73 20-45 (120)
17 2c6a_A Ubiquitin-protein ligas 22.2 39 0.0013 23.7 1.6 20 51-70 15-34 (46)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=57.14 E-value=3.5 Score=35.55 Aligned_cols=47 Identities=23% Similarity=0.511 Sum_probs=33.7
Q ss_pred ecCeeeceeecCCCCcccCCC-CcCCCCCCccccc---CCccCcccccccc
Q 018132 42 INGHTVKVKYCDTCMLYRPPR-ASHCSICNNCVQR---FDHHCPWVGQCIG 88 (360)
Q Consensus 42 vng~~v~~KyC~tC~i~RPpR-s~HCsvC~rCV~r---fDHHCpWvgnCIG 88 (360)
..|......||.+|++|-+.+ .+||..|+-|-.. -=-||.=-|.|+.
T Consensus 76 ~Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 76 DCSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SSCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 366777788999999997665 4888888888654 1246766666653
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=48.58 E-value=9.4 Score=27.92 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=24.0
Q ss_pred eceeecCCCCcccCCCCcCCCCCCccccc
Q 018132 47 VKVKYCDTCMLYRPPRASHCSICNNCVQR 75 (360)
Q Consensus 47 v~~KyC~tC~i~RPpRs~HCsvC~rCV~r 75 (360)
...+.|..|...-|+|+..|+.|+..-+|
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hchhhhccccCcCCcccccccCCCCCCCC
Confidence 34678999999999999999998865443
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.26 E-value=14 Score=26.33 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.2
Q ss_pred ceeecCCCCcccCCCCcCCCCCCcccc
Q 018132 48 KVKYCDTCMLYRPPRASHCSICNNCVQ 74 (360)
Q Consensus 48 ~~KyC~tC~i~RPpRs~HCsvC~rCV~ 74 (360)
..+.|..|...-|+++..|+-|+.--+
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcCCCCceecCCCCCccc
Confidence 457899999999999999999987543
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=42.55 E-value=9.4 Score=29.83 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=18.5
Q ss_pred ceeecCCCCcc--cCCCCcCCCCCCccc
Q 018132 48 KVKYCDTCMLY--RPPRASHCSICNNCV 73 (360)
Q Consensus 48 ~~KyC~tC~i~--RPpRs~HCsvC~rCV 73 (360)
....|..|... --.|-|||+.|++-+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEE
Confidence 44578888763 235789999998744
No 5
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.91 E-value=10 Score=34.01 Aligned_cols=25 Identities=24% Similarity=0.628 Sum_probs=18.3
Q ss_pred eecCCCCccc--CCCCcCCCCCCcccc
Q 018132 50 KYCDTCMLYR--PPRASHCSICNNCVQ 74 (360)
Q Consensus 50 KyC~tC~i~R--PpRs~HCsvC~rCV~ 74 (360)
+.|..|...= --|-|||+.||+-+-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccCCCCCccCCcccccccCCcCCEEC
Confidence 5798887532 348899999998553
No 6
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=39.25 E-value=11 Score=28.11 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=16.5
Q ss_pred ecCCCCccc--CCCCcCCCCCCccc
Q 018132 51 YCDTCMLYR--PPRASHCSICNNCV 73 (360)
Q Consensus 51 yC~tC~i~R--PpRs~HCsvC~rCV 73 (360)
.|..|...= -.|-|||+.|++-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 588887532 34889999998744
No 7
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=38.78 E-value=21 Score=27.85 Aligned_cols=24 Identities=25% Similarity=0.649 Sum_probs=16.7
Q ss_pred eecCCCCccc--CCCCcCCCCCCccc
Q 018132 50 KYCDTCMLYR--PPRASHCSICNNCV 73 (360)
Q Consensus 50 KyC~tC~i~R--PpRs~HCsvC~rCV 73 (360)
..|..|...= -.|-|||+.|++-+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEE
Confidence 4588886532 34789999998754
No 8
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.40 E-value=13 Score=30.75 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=17.4
Q ss_pred eecCCCCccc--CCCCcCCCCCCccc
Q 018132 50 KYCDTCMLYR--PPRASHCSICNNCV 73 (360)
Q Consensus 50 KyC~tC~i~R--PpRs~HCsvC~rCV 73 (360)
..|..|...= -.|-|||+.|++-+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE
Confidence 4688887642 35889999998744
No 9
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.51 E-value=14 Score=28.31 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=16.4
Q ss_pred eecCCCCcc--cCCCCcCCCCCCccc
Q 018132 50 KYCDTCMLY--RPPRASHCSICNNCV 73 (360)
Q Consensus 50 KyC~tC~i~--RPpRs~HCsvC~rCV 73 (360)
..|..|... --.|-|||+.|++-+
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEE
Confidence 357777653 235889999998743
No 10
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=35.43 E-value=17 Score=27.93 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=16.9
Q ss_pred eecCCCCccc--CCCCcCCCCCCccc
Q 018132 50 KYCDTCMLYR--PPRASHCSICNNCV 73 (360)
Q Consensus 50 KyC~tC~i~R--PpRs~HCsvC~rCV 73 (360)
..|..|...= -.|-|||+.|++-+
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCcCcCCccccchhcccccCCCcEE
Confidence 4687886542 34789999998744
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.66 E-value=14 Score=33.56 Aligned_cols=25 Identities=24% Similarity=0.592 Sum_probs=17.3
Q ss_pred eecCCCCccc--CCCCcCCCCCCcccc
Q 018132 50 KYCDTCMLYR--PPRASHCSICNNCVQ 74 (360)
Q Consensus 50 KyC~tC~i~R--PpRs~HCsvC~rCV~ 74 (360)
..|..|...= --|-|||+.|++.+-
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C 191 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFC 191 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CCCcCcCCCCCccccccccCCCcCEeC
Confidence 4688887422 237899999988553
No 12
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=33.04 E-value=17 Score=27.69 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=16.7
Q ss_pred eecCCCCccc--CCCCcCCCCCCccc
Q 018132 50 KYCDTCMLYR--PPRASHCSICNNCV 73 (360)
Q Consensus 50 KyC~tC~i~R--PpRs~HCsvC~rCV 73 (360)
..|..|...= -.|-|||+.|++-+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEE
Confidence 3577786532 34789999998754
No 13
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=25.08 E-value=30 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.705 Sum_probs=14.7
Q ss_pred ecCCCCcccCCCCcCCCCCC
Q 018132 51 YCDTCMLYRPPRASHCSICN 70 (360)
Q Consensus 51 yC~tC~i~RPpRs~HCsvC~ 70 (360)
-|..|+..-||-..||..|-
T Consensus 13 kC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecccccccCCCccchhHHHH
Confidence 48888888888777776664
No 14
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=24.10 E-value=17 Score=32.10 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=13.5
Q ss_pred cCCCCcCCCCCCcccccC
Q 018132 59 RPPRASHCSICNNCVQRF 76 (360)
Q Consensus 59 RPpRs~HCsvC~rCV~rf 76 (360)
.+.|..||..|..|+.|.
T Consensus 191 ~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TSCCTTTTSCSHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHH
Confidence 455558999999998753
No 15
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=23.63 E-value=39 Score=27.48 Aligned_cols=24 Identities=33% Similarity=0.854 Sum_probs=21.2
Q ss_pred eeecCCCCcccCCCCcCCCC--CCcc
Q 018132 49 VKYCDTCMLYRPPRASHCSI--CNNC 72 (360)
Q Consensus 49 ~KyC~tC~i~RPpRs~HCsv--C~rC 72 (360)
.+.|..|...-|+|+..|+. |+..
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 58999999999999999994 8764
No 16
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.36 E-value=28 Score=28.88 Aligned_cols=24 Identities=21% Similarity=0.521 Sum_probs=16.9
Q ss_pred eecCCCCcc--cCCCCcCCCCCCccc
Q 018132 50 KYCDTCMLY--RPPRASHCSICNNCV 73 (360)
Q Consensus 50 KyC~tC~i~--RPpRs~HCsvC~rCV 73 (360)
..|..|... --.|-|||+.|++-+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CcccCcCCccccccccccCCCCCCee
Confidence 358888653 234889999998844
No 17
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=22.16 E-value=39 Score=23.70 Aligned_cols=20 Identities=40% Similarity=0.948 Sum_probs=15.2
Q ss_pred ecCCCCcccCCCCcCCCCCC
Q 018132 51 YCDTCMLYRPPRASHCSICN 70 (360)
Q Consensus 51 yC~tC~i~RPpRs~HCsvC~ 70 (360)
-|..|+..-||-..||..|-
T Consensus 15 kC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTC
T ss_pred ecccccccCCCccchhhHHH
Confidence 48888888888877777663
Done!